BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041652
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DJM|A Chain A, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|B Chain B, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|C Chain C, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|D Chain D, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|E Chain E, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|F Chain F, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|G Chain G, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|H Chain H, Crystal Structure Of The E. Coli Chaperone Drab
Length = 239
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 140 EYQHRVSALIGLQNTKQLVNKALVLITVGGNDFVNNYYLVPFSARSRQYPLP 191
E+Q + L G+ T +N L +TVGG + Y+ PFS SR+YPLP
Sbjct: 164 EWQRAGNRLKGVNPTPFYIN--LSTLTVGGKEVKEREYIAPFS--SREYPLP 211
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 67/183 (36%), Gaps = 23/183 (12%)
Query: 161 ALVLITVGGNDFVNNYYLVPFSARSRQYPLPEYVKYLISEYKKQLKRLYELGARQVLVTG 220
AL IT GGNDF+ L A+ L + V + L + GAR ++V
Sbjct: 148 ALYYITGGGNDFLQGRILNDVQAQQAAGRLVDSV-----------QALQQAGARYIVVWL 196
Query: 221 TGPLGCVPAELAMRGTDGECSAELQRAAALYNPQLVQMLQELNREIGETIFIGANTQQMH 280
LG PA G + + +N +L L + + I N +
Sbjct: 197 LPDLGLTPATFG-----GPLQPFASQLSGTFNAELTAQLSQAGANV-----IPLNIPLLL 246
Query: 281 MDFVSDPQAYGFVTSK--IACCGQGPYNGLGLCTALSNLCPNRDLYAFWDPFHPSEKANR 338
+ +++P ++G + I C G + ++ P+ F D HP+ R
Sbjct: 247 KEGMANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQR 306
Query: 339 IIV 341
+I
Sbjct: 307 LIA 309
>pdb|1QGU|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QGU|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QH8|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH8|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH1|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
pdb|1QH1|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
pdb|1H1L|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
pdb|1H1L|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
Length = 519
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 223 PLGCVPAEL----AMRGTDGECSAELQRAAALYNPQLVQMLQELNREIGETIFIGANTQQ 278
P+ CV + A+ G + + LQ A+ALY P+++ + E+ IG + Q
Sbjct: 108 PIACVSDSMTEDAAVFGGNNNMNLGLQNASALYKPEIIAVSTTCMAEV-----IGDDLQA 162
Query: 279 MHMDFVSDPQAYGFVTSKIA 298
F+++ + GFV S IA
Sbjct: 163 ----FIANAKKDGFVDSSIA 178
>pdb|4G1E|A Chain A, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 998
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 216 VLVTGTGPLGCVPAELAMRGTDGECSAELQRAAALYNPQLVQMLQELNREI 266
LVT G PA + G + +C ELQ A N QL LQ L +E+
Sbjct: 945 TLVTTNVTWGIQPAPMGSGGENAQCEKELQ-ALEKENAQLEWELQALEKEL 994
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,342,448
Number of Sequences: 62578
Number of extensions: 413663
Number of successful extensions: 855
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 855
Number of HSP's gapped (non-prelim): 5
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)