Query 041658
Match_columns 139
No_of_seqs 206 out of 1186
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 15:57:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 3.7E-27 1.3E-31 154.7 6.5 61 28-89 2-62 (63)
2 1u3e_M HNH homing endonuclease 95.7 0.00026 9E-09 53.0 -4.7 63 2-71 84-146 (174)
3 3igm_B PF14_0633 protein; AP2 92.4 0.04 1.4E-06 36.8 1.0 25 24-48 3-28 (77)
4 1z1b_A Integrase; protein-DNA 72.4 6.2 0.00021 30.5 5.3 42 30-77 14-55 (356)
5 3jtz_A Integrase; four strande 44.7 52 0.0018 21.5 5.3 43 33-77 29-75 (88)
6 1x60_A Sporulation-specific N- 40.1 15 0.00051 22.9 1.9 22 53-74 46-67 (79)
7 1uta_A FTSN, MSGA, cell divisi 34.3 22 0.00074 22.4 2.0 23 53-75 46-68 (81)
8 3ju0_A Phage integrase; four s 29.8 97 0.0033 20.9 4.9 47 33-81 29-80 (108)
9 2ftc_I Mitochondrial ribosomal 27.3 86 0.003 21.7 4.3 36 39-79 79-115 (118)
10 1b69_A Protein (integrase); in 26.3 1E+02 0.0034 19.7 4.1 21 27-47 10-30 (69)
11 2bn8_A CEDA, cell division act 24.3 43 0.0015 22.1 2.1 38 28-70 39-76 (87)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.94 E-value=3.7e-27 Score=154.65 Aligned_cols=61 Identities=72% Similarity=1.221 Sum_probs=58.1
Q ss_pred ceeeeEECCCCeeEEEEecCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 041658 28 SFRGVRRRPWGKFGAEIRDGKDNNGERVWLGTFYTPEDAALAYDRAAFRLHGKKAKLNFPRF 89 (139)
Q Consensus 28 ~yrGV~~~~~gkw~A~I~~~~~~~gk~~~LG~f~t~eeAA~AYD~aa~~~~G~~a~lNFp~~ 89 (139)
+|+||+++++|||+|+|+++.+ +|+++|||+|+|+||||+|||.|+++++|..+.||||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~-~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAK-NGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTT-TSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccC-CCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 7999998899999999999876 689999999999999999999999999999999999975
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=95.68 E-value=0.00026 Score=53.00 Aligned_cols=63 Identities=5% Similarity=-0.162 Sum_probs=44.8
Q ss_pred CcCCCCCCchhhHhhhhccCCCCCCCceeeeEECCCCeeEEEEecCCCCCCcEEEeCCCCCHHHHHHHHH
Q 041658 2 TWSDSNSNDAASATATIRTRESHAPRSFRGVRRRPWGKFGAEIRDGKDNNGERVWLGTFYTPEDAALAYD 71 (139)
Q Consensus 2 ~~~n~~~~~~~~~~~~~r~~~~~~~s~yrGV~~~~~gkw~A~I~~~~~~~gk~~~LG~f~t~eeAA~AYD 71 (139)
.++||+-.+..++........... .++||.....++|.+.|... +.++||.|+|.+|||++|.
T Consensus 84 ~~~NL~~~t~~eN~~~~~~~~~~~--~~~g~~~~~~~k~~~vi~~~-----~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 84 LSTNLRWVTQKINVENQMSRGTLN--VSKAQQIAKIKNQKPIIVIS-----PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp CGGGEEEECHHHHHHHHHHHTCCC--CHHHHHHHHHHTCCCEEEEC-----TTSCEEEESCHHHHHHHHT
T ss_pred CHHHcEECCHHHHhhcccccCccc--ceeeeeeccCCCCceEEEEc-----CCceEEeeCCHHHHHHHHC
Confidence 367888888888777665443222 25677443336788999883 4667999999999999974
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=92.36 E-value=0.04 Score=36.80 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=19.7
Q ss_pred CCCCceeeeEEC-CCCeeEEEEecCC
Q 041658 24 HAPRSFRGVRRR-PWGKFGAEIRDGK 48 (139)
Q Consensus 24 ~~~s~yrGV~~~-~~gkw~A~I~~~~ 48 (139)
+.+|+|.||++. ..+.|.|.+.+.+
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g 28 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGA 28 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETT
T ss_pred CCCCCCCcEEeecCCceEEEEEecCC
Confidence 457899999666 5599999999943
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=72.43 E-value=6.2 Score=30.45 Aligned_cols=42 Identities=19% Similarity=0.100 Sum_probs=30.5
Q ss_pred eeeEECCCCeeEEEEecCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHh
Q 041658 30 RGVRRRPWGKFGAEIRDGKDNNGERVWLGTFYTPEDAALAYDRAAFRL 77 (139)
Q Consensus 30 rGV~~~~~gkw~A~I~~~~~~~gk~~~LG~f~t~eeAA~AYD~aa~~~ 77 (139)
.||+.++.|.|..+... +|+++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~----~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR----TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT----TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec----CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 36877778999877644 577899996 8888877766554444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=44.70 E-value=52 Score=21.47 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=28.5
Q ss_pred EECCCC--eeEEEEecCCCCCCcEEEeCCCC--CHHHHHHHHHHHHHHh
Q 041658 33 RRRPWG--KFGAEIRDGKDNNGERVWLGTFY--TPEDAALAYDRAAFRL 77 (139)
Q Consensus 33 ~~~~~g--kw~A~I~~~~~~~gk~~~LG~f~--t~eeAA~AYD~aa~~~ 77 (139)
...++| .|.-+.+..++ .+++-||.|+ |..+|-..-+.+...+
T Consensus 29 ~V~psG~K~w~~ryr~~Gk--~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGK--ESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EECTTSCEEEEEEEEETTE--EEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEEEEEEeCCe--EEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 444553 48877776444 4678999997 5788877666555444
No 6
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=40.12 E-value=15 Score=22.87 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=17.8
Q ss_pred cEEEeCCCCCHHHHHHHHHHHH
Q 041658 53 ERVWLGTFYTPEDAALAYDRAA 74 (139)
Q Consensus 53 k~~~LG~f~t~eeAA~AYD~aa 74 (139)
-++++|.|.+.++|..+-+...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~ 67 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAK 67 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHH
Confidence 4889999999999988866543
No 7
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=34.31 E-value=22 Score=22.38 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=18.3
Q ss_pred cEEEeCCCCCHHHHHHHHHHHHH
Q 041658 53 ERVWLGTFYTPEDAALAYDRAAF 75 (139)
Q Consensus 53 k~~~LG~f~t~eeAA~AYD~aa~ 75 (139)
.+|.+|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 48899999999999888665443
No 8
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=29.78 E-value=97 Score=20.94 Aligned_cols=47 Identities=26% Similarity=0.203 Sum_probs=29.5
Q ss_pred EECCCC--eeEEEEecCCCCCCcEEEeCCCC--CHHHHHHHHHHHHHHh-cCCC
Q 041658 33 RRRPWG--KFGAEIRDGKDNNGERVWLGTFY--TPEDAALAYDRAAFRL-HGKK 81 (139)
Q Consensus 33 ~~~~~g--kw~A~I~~~~~~~gk~~~LG~f~--t~eeAA~AYD~aa~~~-~G~~ 81 (139)
...++| .|.-+.+..++ .+.+-||.|+ |..+|-..-+.+...+ .|.+
T Consensus 29 ~V~psG~K~w~~rYr~~GK--~~~~~LG~yp~~SLa~AR~~a~~~r~~l~~GiD 80 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKK--QRLLALGVYPAVSLADARQRRDEAKKLLAAGID 80 (108)
T ss_dssp EECTTSCEEEEEEEEETTE--EEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEcCCCEEEEEEEEEcCc--eEEEecCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 444554 48877776444 4578899997 5777776666554444 3543
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=27.31 E-value=86 Score=21.75 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=27.3
Q ss_pred eeEEEEecCCCCCCcE-EEeCCCCCHHHHHHHHHHHHHHhcC
Q 041658 39 KFGAEIRDGKDNNGER-VWLGTFYTPEDAALAYDRAAFRLHG 79 (139)
Q Consensus 39 kw~A~I~~~~~~~gk~-~~LG~f~t~eeAA~AYD~aa~~~~G 79 (139)
.|.|.|.. |+- +-++...+++.|-.|...|+.+|=+
T Consensus 79 ~wva~Vk~-----G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKA-----GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECC-----CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 49999976 444 4455558899999999999988743
No 10
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=26.26 E-value=1e+02 Score=19.70 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=17.9
Q ss_pred CceeeeEECCCCeeEEEEecC
Q 041658 27 RSFRGVRRRPWGKFGAEIRDG 47 (139)
Q Consensus 27 s~yrGV~~~~~gkw~A~I~~~ 47 (139)
--+.|++.+..|+|+..+.+.
T Consensus 10 ~L~~GesqR~dG~Y~yry~d~ 30 (69)
T 1b69_A 10 ILKTGESQRKDGRYLYKYIDS 30 (69)
T ss_dssp CCCTTEEECSSSCEEEEEECT
T ss_pred ccCCCeEEccCCcEEEEEEcC
Confidence 457799999899999999885
No 11
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=24.34 E-value=43 Score=22.06 Aligned_cols=38 Identities=32% Similarity=0.284 Sum_probs=26.7
Q ss_pred ceeeeEECCCCeeEEEEecCCCCCCcEEEeCCCCCHHHHHHHH
Q 041658 28 SFRGVRRRPWGKFGAEIRDGKDNNGERVWLGTFYTPEDAALAY 70 (139)
Q Consensus 28 ~yrGV~~~~~gkw~A~I~~~~~~~gk~~~LG~f~t~eeAA~AY 70 (139)
+|+-||.-+ |||.|.+..+.. -.---.|..+|.|-+--
T Consensus 39 ~frdvw~lr-gkyvafvl~ge~----frrspafsvpesaqrwa 76 (87)
T 2bn8_A 39 SFRDVWMLR-GKYVAFVLMGES----FLRSPAFTVPESAQRWA 76 (87)
T ss_dssp TCTTEEEET-TEEEEBCCSSSC----CCBCCCBSSHHHHHHHH
T ss_pred cchhheeec-cceEEEEEechh----hccCCccCCcHHHHHHH
Confidence 799998665 999999877332 22235688888887653
Done!