BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041662
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LFN8|GLR26_ARATH Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2
SV=2
Length = 967
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 2 SKNTTIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAA 61
S+ + V VG+VLD N ++L INMSLS+FYN+++ +KTR++LN RDSK VV A
Sbjct: 29 SQQEVLQVQVGIVLDTNATLAALSLRAINMSLSEFYNTHNGFKTRIVLNIRDSKRTVVGA 88
Query: 62 AAAEILI 68
AA+ + +
Sbjct: 89 AASALYL 95
>sp|Q9SHV1|GLR22_ARATH Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2
SV=1
Length = 920
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 4 NTTIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA 63
N VN+G+V D+ +A+ CINMSL+DFY+S ++TRL++N DSK DVV AA
Sbjct: 27 NGKTQVNIGVVSDVGTSYPDVAMLCINMSLADFYSSRPQFQTRLVVNVGDSKNDVVGAAT 86
Query: 64 AEI 66
A I
Sbjct: 87 AAI 89
>sp|O04660|GLR21_ARATH Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2
SV=2
Length = 901
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 42/65 (64%)
Query: 2 SKNTTIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAA 61
++N VNVG+V DI + L CINMSLSDFY+S+ +TRL+ DSK DVV A
Sbjct: 25 AQNRITNVNVGIVNDIGTAYSNMTLLCINMSLSDFYSSHPETQTRLVTTVVDSKNDVVTA 84
Query: 62 AAAEI 66
AAA +
Sbjct: 85 AAAAL 89
>sp|Q9LFN5|GLR25_ARATH Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1
SV=2
Length = 918
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 2 SKNTTIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAA 61
S+ + V VG+VL N ++L INMSLS+FYN+++ +KTR++LN RDSK VV A
Sbjct: 30 SQKEALQVKVGIVLGSNVTLADLSLRAINMSLSEFYNTHNGFKTRIVLNVRDSKQTVVGA 89
Query: 62 AAAEILI 68
AA+ + +
Sbjct: 90 AASALYL 96
>sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2
SV=2
Length = 947
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 3 KNTTIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAA 62
+N + VG+VLD+N KI L+ IN++LSDFY + +Y+TRL L+ RDS D V A+
Sbjct: 27 QNQISEIKVGVVLDLNTTFSKICLTSINLALSDFYKDHPNYRTRLALHVRDSMKDTVQAS 86
Query: 63 AAEILIDQ 70
AA + + Q
Sbjct: 87 AAALDLIQ 94
>sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2
SV=3
Length = 952
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 3 KNTTIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAA 62
+N T + VG+VLD++ K+ L+ IN+SLSDFY +S Y TRL ++ RDS DVV A+
Sbjct: 33 QNQTTEIKVGVVLDLHTSFSKLCLTSINISLSDFYKYHSDYTTRLAIHIRDSMEDVVQAS 92
Query: 63 AAEI 66
+A +
Sbjct: 93 SAAL 96
>sp|O81078|GLR29_ARATH Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2
SV=1
Length = 940
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 42/64 (65%)
Query: 3 KNTTIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAA 62
+N T + VG+VLD+N KI L+ I M++SDFY + +Y TRL L+ RDS D V A+
Sbjct: 24 QNQTSEIKVGVVLDLNTTFSKICLTSIKMAVSDFYADHPNYLTRLTLHVRDSMEDTVQAS 83
Query: 63 AAEI 66
AA +
Sbjct: 84 AAAL 87
>sp|O81776|GLR24_ARATH Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=GLR2.4 PE=2
SV=2
Length = 896
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3 KNTTIPV-NVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVA 60
+NTTI V NVG+V D+ ++L INMSLSDFY+S +TRLLLN DS+ DVV
Sbjct: 25 QNTTIQVINVGVVTDVGTTASNLSLLAINMSLSDFYSSRPESRTRLLLNFADSRDDVVG 83
>sp|Q9SHV2|GLR23_ARATH Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2
SV=1
Length = 895
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 23 KIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAAAEI 66
K+ + CINMS+SDFY+SN ++TRL++N DSK DVV AA A +
Sbjct: 45 KVVMLCINMSISDFYSSNPQFETRLVVNVGDSKSDVVGAAIAAL 88
>sp|Q9LV72|GLR12_ARATH Glutamate receptor 1.2 OS=Arabidopsis thaliana GN=GLR1.2 PE=2
SV=1
Length = 867
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 40/55 (72%)
Query: 7 IPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAA 61
I V VGLVLD+ +GKI S ++M+LSDFY++++ YKTRL L RDS G+ + A
Sbjct: 38 IRVRVGLVLDLGSVEGKIVRSSVSMALSDFYDNHNDYKTRLSLLVRDSHGEPLLA 92
>sp|Q8LGN1|GLR14_ARATH Glutamate receptor 1.4 OS=Arabidopsis thaliana GN=GLR1.4 PE=2 SV=2
Length = 861
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 9 VNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAAAEI 66
V +GLV+D+ +GK+ + I+M+LSDFY+ N+ Y+TR+ + +RDS GD + A AA +
Sbjct: 46 VRIGLVVDMGSMEGKLVTTSISMALSDFYHVNNGYRTRVSVLSRDSHGDPLQALAAAM 103
>sp|Q9M8W7|GLR11_ARATH Glutamate receptor 1.1 OS=Arabidopsis thaliana GN=GLR1.1 PE=2
SV=1
Length = 808
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 9 VNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGD-VVAAAAAEIL 67
V VGLV+D++ GKI + N++LSDFY N+ Y+TR+ + RDS+GD ++A AAA L
Sbjct: 30 VRVGLVVDLSSIQGKILETSFNLALSDFYGINNGYRTRVSVLVRDSQGDPIIALAAATDL 89
Query: 68 I 68
+
Sbjct: 90 L 90
>sp|Q9FH75|GLR13_ARATH Glutamate receptor 1.3 OS=Arabidopsis thaliana GN=GLR1.3 PE=2
SV=1
Length = 860
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 7 IPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAAAEI 66
+ + VGLVLD+ GKI + ++M+LS FY ++ YKTR+ ++ R+S G+ + A A+ +
Sbjct: 40 VQIRVGLVLDLGSLKGKIVKNSVSMALSYFYAIHNDYKTRVSVSLRNSHGEPLLALASAV 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,572,909
Number of Sequences: 539616
Number of extensions: 777118
Number of successful extensions: 1228
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1214
Number of HSP's gapped (non-prelim): 14
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)