Query 041662
Match_columns 70
No_of_seqs 104 out of 235
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 15:59:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o21_A Glutamate receptor 3; p 99.1 7.1E-10 2.4E-14 78.4 8.6 62 6-70 3-68 (389)
2 4gnr_A ABC transporter substra 99.0 2.9E-09 9.9E-14 72.9 8.7 65 6-70 5-73 (353)
3 3om0_A Glutamate receptor, ion 99.0 1.4E-09 4.8E-14 76.0 6.9 63 7-69 3-68 (393)
4 3qek_A NMDA glutamate receptor 98.9 2E-09 6.9E-14 75.0 7.0 61 5-70 2-64 (384)
5 4f11_A Gamma-aminobutyric acid 98.9 5.3E-09 1.8E-13 73.7 8.1 63 6-69 12-81 (433)
6 3saj_A Glutamate receptor 1; r 98.8 1.7E-08 5.8E-13 70.6 7.3 58 5-70 7-66 (384)
7 3h6g_A Glutamate receptor, ion 98.8 1.6E-08 5.4E-13 70.5 6.5 64 6-69 2-69 (395)
8 3hsy_A Glutamate receptor 2; l 98.7 3.6E-08 1.2E-12 68.9 7.5 56 8-70 2-59 (376)
9 3h5l_A Putative branched-chain 98.7 1.1E-07 3.8E-12 66.7 8.5 65 5-69 11-80 (419)
10 3n0x_A Possible substrate bind 98.7 7.9E-08 2.7E-12 66.7 7.5 63 7-69 3-70 (374)
11 4gpa_A Glutamate receptor 4; P 98.6 5.5E-08 1.9E-12 66.5 6.2 62 5-69 2-67 (389)
12 4f06_A Extracellular ligand-bi 98.6 1.4E-07 4.8E-12 65.6 7.7 64 5-70 2-70 (371)
13 3i45_A Twin-arginine transloca 98.6 1.8E-07 6E-12 64.9 7.7 64 6-69 3-70 (387)
14 3lkb_A Probable branched-chain 98.6 3.9E-07 1.3E-11 63.1 8.8 65 6-70 5-73 (392)
15 1dp4_A Atrial natriuretic pept 98.6 2E-07 6.8E-12 65.4 7.1 63 7-69 1-74 (435)
16 2e4u_A Metabotropic glutamate 98.5 4.4E-07 1.5E-11 67.0 7.7 64 6-69 12-90 (555)
17 3ipc_A ABC transporter, substr 98.4 1.2E-06 4E-11 59.7 8.3 62 8-69 2-67 (356)
18 3td9_A Branched chain amino ac 98.4 8.1E-07 2.8E-11 60.8 7.5 62 6-70 14-79 (366)
19 1jdp_A NPR-C, atrial natriuret 98.4 7.5E-07 2.6E-11 63.0 7.5 57 6-63 7-71 (441)
20 3eaf_A ABC transporter, substr 98.4 9.8E-07 3.3E-11 61.3 7.7 62 7-68 3-72 (391)
21 3kg2_A Glutamate receptor 2; I 98.4 1E-06 3.6E-11 66.5 7.5 55 8-69 2-58 (823)
22 3lop_A Substrate binding perip 98.4 1.2E-06 4E-11 60.1 7.0 64 6-69 3-70 (364)
23 3mq4_A Mglur7, metabotropic gl 98.3 1.4E-06 4.8E-11 63.4 7.2 64 6-69 14-92 (481)
24 3hut_A Putative branched-chain 98.3 4.9E-06 1.7E-10 56.6 8.3 62 7-68 3-68 (358)
25 4eyg_A Twin-arginine transloca 98.3 3.6E-06 1.2E-10 57.3 7.4 63 5-69 3-69 (368)
26 1usg_A Leucine-specific bindin 98.3 5.7E-06 2E-10 55.7 8.3 62 8-69 2-67 (346)
27 3i09_A Periplasmic branched-ch 98.3 4.5E-06 1.5E-10 57.4 7.9 62 6-69 2-68 (375)
28 3n0w_A ABC branched chain amin 98.2 5.4E-06 1.8E-10 57.2 6.9 62 6-69 4-70 (379)
29 3sm9_A Mglur3, metabotropic gl 98.2 7.4E-06 2.5E-10 59.9 7.7 65 5-69 10-89 (479)
30 1pea_A Amidase operon; gene re 97.9 3.4E-05 1.2E-09 53.4 7.5 64 6-69 5-72 (385)
31 4evq_A Putative ABC transporte 97.9 3.2E-05 1.1E-09 52.7 6.5 63 5-69 13-79 (375)
32 3sg0_A Extracellular ligand-bi 97.9 1.8E-05 6E-10 53.9 5.0 60 5-70 24-87 (386)
33 3snr_A Extracellular ligand-bi 97.9 1.6E-05 5.5E-10 53.5 4.7 61 4-70 3-67 (362)
34 3ks9_A Mglur1, metabotropic gl 97.5 0.00049 1.7E-08 50.4 8.0 63 6-68 15-96 (496)
35 3ckm_A YRAM (HI1655), LPOA; pe 97.4 0.00013 4.6E-09 49.9 3.5 46 8-62 2-50 (327)
36 2h4a_A YRAM (HI1655); perplasm 96.5 0.0031 1E-07 44.4 4.5 50 10-69 2-54 (325)
37 3qel_B Glutamate [NMDA] recept 92.0 0.45 1.6E-05 33.2 6.2 56 6-68 2-59 (364)
38 3lkv_A Uncharacterized conserv 76.7 12 0.00042 25.0 7.0 65 3-70 3-68 (302)
39 2qh8_A Uncharacterized protein 65.8 25 0.00087 23.0 7.1 60 6-68 6-66 (302)
40 3pvh_A UPF0603 protein AT1G547 45.3 37 0.0013 21.2 4.4 41 13-56 17-57 (153)
41 2kw7_A Conserved domain protei 37.9 70 0.0024 19.7 4.9 44 12-58 19-63 (157)
42 3ksm_A ABC-type sugar transpor 37.0 75 0.0026 19.8 6.1 45 9-60 1-46 (276)
43 2kpt_A Putative secreted prote 34.7 83 0.0028 19.6 5.1 54 12-69 15-69 (148)
44 4h3k_B RNA polymerase II subun 30.5 39 0.0014 23.3 2.9 50 12-68 126-179 (214)
45 3lft_A Uncharacterized protein 26.3 1.3E+02 0.0046 19.3 6.9 52 8-63 2-53 (295)
46 3b0c_W CENP-W, centromere prot 23.6 38 0.0013 18.9 1.5 21 18-38 20-40 (76)
47 3e8v_A Possible transglutamina 23.5 23 0.00078 20.9 0.6 17 46-62 2-18 (82)
48 1b67_A Protein (histone HMFA); 23.0 55 0.0019 17.5 2.1 21 18-38 17-37 (68)
49 3p9y_A CG14216, LD40846P; phos 22.8 61 0.0021 22.0 2.7 42 27-68 118-163 (198)
50 2auh_B Growth factor receptor- 22.4 27 0.00092 19.6 0.7 27 12-38 16-45 (59)
51 1mjn_A Integrin alpha-L; rossm 20.1 1.5E+02 0.0053 17.8 5.9 29 8-36 2-34 (179)
No 1
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=99.06 E-value=7.1e-10 Score=78.43 Aligned_cols=62 Identities=6% Similarity=0.037 Sum_probs=55.0
Q ss_pred ceeeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCC-c-ceEEEEEeecCCC-CHHHHHH-HHHhhhC
Q 041662 6 TIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSH-Y-KTRLLLNTRDSKG-DVVAAAA-AEILIDQ 70 (70)
Q Consensus 6 ~~~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~-~-~t~l~l~~~DS~~-d~~~aa~-A~~Li~~ 70 (70)
|.+|+||+|+++++. ..+.++++|++++|++... + +.+|++++.|++| |+..|+. +.+|+++
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~ 68 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSR 68 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTT
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhc
Confidence 678999999999987 8899999999999998765 2 6899999999998 9999988 7888864
No 2
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=98.98 E-value=2.9e-09 Score=72.93 Aligned_cols=65 Identities=14% Similarity=0.277 Sum_probs=57.6
Q ss_pred ceeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhhC
Q 041662 6 TIPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILIDQ 70 (70)
Q Consensus 6 ~~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~~ 70 (70)
..+|+||++++++. ..|+..+.++++|++++|+..-..+.+|+|.++|++++|-.|+. +.+|+++
T Consensus 5 ~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~ielv~~D~~~~p~~a~~~a~~li~~ 73 (353)
T 4gnr_A 5 EKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQ 73 (353)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhh
Confidence 45799999999975 67999999999999999998766678999999999999999988 7888864
No 3
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=98.96 E-value=1.4e-09 Score=75.99 Aligned_cols=63 Identities=10% Similarity=0.068 Sum_probs=52.8
Q ss_pred eeeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCCc-ceEEEEEeecCCCCH-HHHHH-HHHhhh
Q 041662 7 IPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRDSKGDV-VAAAA-AEILID 69 (70)
Q Consensus 7 ~~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~-~t~l~l~~~DS~~d~-~~aa~-A~~Li~ 69 (70)
.+|+||+|+++++.+|+..+.|+++|++++|++...+ +.+|++++.|+.+++ ..++. +.+|++
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~ 68 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILP 68 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGG
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHh
Confidence 4799999999999999999999999999999987655 479999999999975 44444 455553
No 4
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=98.94 E-value=2e-09 Score=74.98 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=53.0
Q ss_pred CceeeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH--HHHhhhC
Q 041662 5 TTIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA--AEILIDQ 70 (70)
Q Consensus 5 ~~~~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~--A~~Li~~ 70 (70)
.|.+|+||+|++++ ..+.+++||++++|+.....+.+|++...|+++||..++. +.+|+++
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~ 64 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMALSVCEDLISS 64 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCCSSEEEEEEEEECCSSHHHHHHHHHHHTGGG
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccCCceEEEEEEecccCCHHHHHHHHHHHHHHc
Confidence 57899999999998 7899999999999997766678999999999999999985 4558763
No 5
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=98.90 E-value=5.3e-09 Score=73.73 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=56.0
Q ss_pred ceeeEEEEEEeCCC-----chhHHHHHHHHHHHhhhhcCCCCc-ceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 6 TIPVNVGLVLDING-----EDGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 6 ~~~v~IG~i~d~~S-----~iGk~~~~aiemAv~Dfn~~~~~~-~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
..+|+||++++++. ..|+..+.++++|++++|+. ..+ +.+|+|+++|++|++..|.. +.+|++
T Consensus 12 ~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~ 81 (433)
T 4f11_A 12 SPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIK 81 (433)
T ss_dssp CCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHh
Confidence 45799999999998 57999999999999999998 444 47999999999999999988 788885
No 6
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=98.79 E-value=1.7e-08 Score=70.61 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=50.8
Q ss_pred CceeeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCC-CHHHHHH-HHHhhhC
Q 041662 5 TTIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKG-DVVAAAA-AEILIDQ 70 (70)
Q Consensus 5 ~~~~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~-d~~~aa~-A~~Li~~ 70 (70)
.+.+|+||+|+++++. ..+.+++||++++|+.. +|+++++|+++ |+..++. +.+|+++
T Consensus 7 ~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g-----~l~~~~~D~~~~d~~~a~~~~~~l~~~ 66 (384)
T 3saj_A 7 MPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP-----KLLPQIDIVNISDSFEMTYRFCSQFSK 66 (384)
T ss_dssp CCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS-----EEEEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC-----ccceeeEecccCchhhHHHHHHHHHhc
Confidence 4678999999999987 88999999999999865 89999999997 9998887 6777753
No 7
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=98.76 E-value=1.6e-08 Score=70.52 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=54.6
Q ss_pred ceeeEEEEEEeCC-CchhHHHHHHHHHHHhhhhcCCCCc-ceEEEEEeecCC-CCHHHHHH-HHHhhh
Q 041662 6 TIPVNVGLVLDIN-GEDGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRDSK-GDVVAAAA-AEILID 69 (70)
Q Consensus 6 ~~~v~IG~i~d~~-S~iGk~~~~aiemAv~Dfn~~~~~~-~t~l~l~~~DS~-~d~~~aa~-A~~Li~ 69 (70)
|.+|+||+|++++ +..|+..+.|++||++++|++...+ +.+|.++++|.. .|+..++. |.+|++
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~ 69 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLS 69 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhh
Confidence 6789999999995 4789999999999999999987666 379999999888 58888777 777764
No 8
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=98.73 E-value=3.6e-08 Score=68.89 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=48.6
Q ss_pred eeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCC-CHHHHHH-HHHhhhC
Q 041662 8 PVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKG-DVVAAAA-AEILIDQ 70 (70)
Q Consensus 8 ~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~-d~~~aa~-A~~Li~~ 70 (70)
+++||+|+++++. .++.+++||++++|+. +.+|++.+.|+++ |+..|+. +.+|+++
T Consensus 2 ~i~IG~i~~~sg~---~~~~~~~lAv~~iN~~----g~~l~~~~~d~~~~d~~~a~~~~~~li~~ 59 (376)
T 3hsy_A 2 SIQIGGLFPRGAD---QEYSAFRVGMVQFSTS----EFRLTPHIDNLEVANSFAVTNAFCSQFSR 59 (376)
T ss_dssp EEEEEEEEETTCH---HHHHHHHHHHHHTCCS----SCEEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred ceeEEEEeCCCCH---HHHHHHHHHHHHHhcC----CeEEEEEEeecCCCChHHHHHHHHHHHhc
Confidence 6899999999864 6799999999999987 4699999999876 9999888 7888764
No 9
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=98.67 E-value=1.1e-07 Score=66.71 Aligned_cols=65 Identities=23% Similarity=0.255 Sum_probs=55.9
Q ss_pred CceeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCC-CCHHHHHH-HHHhhh
Q 041662 5 TTIPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSK-GDVVAAAA-AEILID 69 (70)
Q Consensus 5 ~~~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~-~d~~~aa~-A~~Li~ 69 (70)
...+++||++++++. ..|+..+.++++|++++|+....++.+++|.+.|+. |++-.+.. +.+|++
T Consensus 11 ~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~i~l~~~D~~~~~~~~a~~~a~~li~ 80 (419)
T 3h5l_A 11 SSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGRPIELVFADTQSKGVDVVIQSAQRLID 80 (419)
T ss_dssp --CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBTTBCEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcCceEEEEEEccCCCCCHHHHHHHHHHHhh
Confidence 355799999999988 559999999999999999877666789999999998 69988887 788886
No 10
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=98.66 E-value=7.9e-08 Score=66.69 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=53.9
Q ss_pred eeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcC-CCCcceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 7 IPVNVGLVLDING---EDGKIALSCINMSLSDFYNS-NSHYKTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 7 ~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~-~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
.+++||++++++. ..|+..+.++++|++++|.. .-..+.+|+|.++|++++|..+.. +.+|++
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~ 70 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQ 70 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHH
Confidence 5799999999986 57999999999999999973 223467999999999999999888 788886
No 11
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=98.64 E-value=5.5e-08 Score=66.49 Aligned_cols=62 Identities=10% Similarity=0.043 Sum_probs=47.5
Q ss_pred CceeeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcc--eEEEEEeecCC-CCHHHHHH-HHHhhh
Q 041662 5 TTIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYK--TRLLLNTRDSK-GDVVAAAA-AEILID 69 (70)
Q Consensus 5 ~~~~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~--t~l~l~~~DS~-~d~~~aa~-A~~Li~ 69 (70)
-|.+|+||+||+.++ +..+.|+++|++++|++...++ .+|.....++. ++++.++. +.+|++
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 67 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYS 67 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHh
Confidence 478999999999874 6788999999999999887664 45665555544 67887776 456654
No 12
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=98.61 E-value=1.4e-07 Score=65.64 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=52.9
Q ss_pred CceeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCC-CHHHHHH-HHHhhhC
Q 041662 5 TTIPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKG-DVVAAAA-AEILIDQ 70 (70)
Q Consensus 5 ~~~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~-d~~~aa~-A~~Li~~ 70 (70)
.+.+|+||++++++. ..|+..+.++++|++++|. -..+.+|+|.++|++| +|-.+.. |.+|+++
T Consensus 2 ~Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~ng--gi~G~~ielv~~D~~~~~p~~a~~~a~~Li~~ 70 (371)
T 4f06_A 2 NADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGN--KVAGHTVEFVYRDEVSPNPAQSKALAQELIVK 70 (371)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCS--EETTEEEEEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCC--CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 346799999999985 6799999999999999984 2335799999999986 8988887 7889864
No 13
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=98.59 E-value=1.8e-07 Score=64.89 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=56.4
Q ss_pred ceeeEEEEEEeCCC--chhHHHHHHHHHHHhhhhcCCCCcc-eEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 6 TIPVNVGLVLDING--EDGKIALSCINMSLSDFYNSNSHYK-TRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 6 ~~~v~IG~i~d~~S--~iGk~~~~aiemAv~Dfn~~~~~~~-t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
..+++||++++++. ..|+..+.++++|++++|+....++ .+++|.+.|+++++..+.. +.+|++
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~ 70 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLT 70 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHH
Confidence 35799999999987 5699999999999999999876666 8999999999999999887 788875
No 14
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=98.57 E-value=3.9e-07 Score=63.07 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=56.6
Q ss_pred ceeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhhC
Q 041662 6 TIPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILIDQ 70 (70)
Q Consensus 6 ~~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~~ 70 (70)
..+++||++++++. ..|+..+.++++|++++|+.....+.+++|.+.|+++++-.+.. +.+|+++
T Consensus 5 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~li~~ 73 (392)
T 3lkb_A 5 QQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQRFFEEAVDR 73 (392)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCCHHHHHHHHHHHHhh
Confidence 56899999999975 57999999999999999987666678999999999999988877 6778753
No 15
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=98.55 E-value=2e-07 Score=65.37 Aligned_cols=63 Identities=14% Similarity=0.020 Sum_probs=50.4
Q ss_pred eeeEEEEEEeCCC---chhHHHHH-HHHHHHhhhhcCCCCc-ceEEEEEeecC-----CCCHHHHHH-HHHhhh
Q 041662 7 IPVNVGLVLDING---EDGKIALS-CINMSLSDFYNSNSHY-KTRLLLNTRDS-----KGDVVAAAA-AEILID 69 (70)
Q Consensus 7 ~~v~IG~i~d~~S---~iGk~~~~-aiemAv~Dfn~~~~~~-~t~l~l~~~DS-----~~d~~~aa~-A~~Li~ 69 (70)
+.++||++++++. ..|..... |+++|++++|++...+ +.+|.++++|+ +|++..++. +.+++.
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~ 74 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKW 74 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHH
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHH
Confidence 3689999999974 67766666 9999999999987655 68999999999 555666665 777763
No 16
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=98.48 E-value=4.4e-07 Score=66.96 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=55.5
Q ss_pred ceeeEEEEEEeCCC-------------chhHHHHHHHHHHHhhhhcCCCCc-ceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 6 TIPVNVGLVLDING-------------EDGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 6 ~~~v~IG~i~d~~S-------------~iGk~~~~aiemAv~Dfn~~~~~~-~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
++.++||++++++. ..|.....||++|++++|+++..+ +.+|.+++.|+.+++..|+. |++|+.
T Consensus 12 ~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l~ 90 (555)
T 2e4u_A 12 EGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVR 90 (555)
T ss_dssp CCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHHh
Confidence 56799999999974 468889999999999999987766 68999999999999999887 777763
No 17
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=98.43 E-value=1.2e-06 Score=59.69 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=53.6
Q ss_pred eeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 8 PVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 8 ~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
+++||++++++. ..|...+.++++|++++|...-..+.+++|.+.|+++++-.+.. +.+|++
T Consensus 2 ~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~ 67 (356)
T 3ipc_A 2 DVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVA 67 (356)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred eEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHH
Confidence 689999999875 58999999999999999987655567899999999999988877 677765
No 18
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=98.43 E-value=8.1e-07 Score=60.83 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=53.0
Q ss_pred ceeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhhC
Q 041662 6 TIPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILIDQ 70 (70)
Q Consensus 6 ~~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~~ 70 (70)
+.+++||++++++. ..|+..+.++++|++++|+ ..+.+++|.+.|+++++-.+.. +.+|+++
T Consensus 14 ~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~ 79 (366)
T 3td9_A 14 RKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---VLGEEVELVLLDTRSEKTEAANAAARAIDK 79 (366)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---ETTEEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred cceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---cCCeEEEEEEecCCCCHHHHHHHHHHHhcc
Confidence 55899999999987 5799999999999999998 4467999999999999988877 6777753
No 19
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=98.43 E-value=7.5e-07 Score=62.97 Aligned_cols=57 Identities=16% Similarity=0.055 Sum_probs=45.8
Q ss_pred ceeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCC----Cc-ceEEEEEeecCCCCHHHHHH
Q 041662 6 TIPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNS----HY-KTRLLLNTRDSKGDVVAAAA 63 (70)
Q Consensus 6 ~~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~----~~-~t~l~l~~~DS~~d~~~aa~ 63 (70)
+.+++||++++++. ..|+..+.|+++|++++|+++. .+ +.+|.+++.|++|++- |..
T Consensus 7 ~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~ 71 (441)
T 1jdp_A 7 PQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALF 71 (441)
T ss_dssp CCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHH
T ss_pred CCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHH
Confidence 45799999999976 4567888999999999998764 44 5899999999999996 543
No 20
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=98.42 E-value=9.8e-07 Score=61.34 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=53.5
Q ss_pred eeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCC--cce--EEEEEeecCCCCHHHHHH-HHHhh
Q 041662 7 IPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSH--YKT--RLLLNTRDSKGDVVAAAA-AEILI 68 (70)
Q Consensus 7 ~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~--~~t--~l~l~~~DS~~d~~~aa~-A~~Li 68 (70)
.+++||++++++. ..|+..+.++++|++++|+..-. .+. +++|.+.|+++++-.+.. +.+|+
T Consensus 3 ~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li 72 (391)
T 3eaf_A 3 LTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFR 72 (391)
T ss_dssp EEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5799999999986 57999999999999999987643 345 899999999999988877 67887
No 21
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=98.37 E-value=1e-06 Score=66.54 Aligned_cols=55 Identities=13% Similarity=0.168 Sum_probs=48.1
Q ss_pred eeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCC-CHHHHHH-HHHhhh
Q 041662 8 PVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKG-DVVAAAA-AEILID 69 (70)
Q Consensus 8 ~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~-d~~~aa~-A~~Li~ 69 (70)
+|+||++++++.. ..+.|+++|++++|++. .+|.+++.|+.| ++..++. +.+|++
T Consensus 2 ~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~----~~l~~~~~D~~~~~~~~a~~~~~~l~~ 58 (823)
T 3kg2_A 2 SIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE----FRLTPHIDNLEVANSFAVTNAFCSQFS 58 (823)
T ss_dssp EEEEEEEEETTCH---HHHHHHHHHHHHTCCSS----CEEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCCh---HHHHHHHHHHHHHhcCC----eEEEEEEEEcCCCChHHHHHHHHHHHh
Confidence 6899999999987 88999999999999976 699999999999 8988887 455654
No 22
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=98.37 E-value=1.2e-06 Score=60.15 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=54.3
Q ss_pred ceeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 6 TIPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 6 ~~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
..+++||++++++. ..|...+.++++|++++|+..-..+.+++|.+.|+++++-.+.. +.+|++
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~l~~ 70 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTVRNVRDMAR 70 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 35799999999864 78999999999999999987665678899999999999988877 677775
No 23
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=98.33 E-value=1.4e-06 Score=63.39 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=55.5
Q ss_pred ceeeEEEEEEeCCCc-------------hhHHHHHHHHHHHhhhhcCCCCc-ceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 6 TIPVNVGLVLDINGE-------------DGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 6 ~~~v~IG~i~d~~S~-------------iGk~~~~aiemAv~Dfn~~~~~~-~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
++.++||+++++... .|.....||.+|+|++|+++..+ +.+|.+++.|+.+++-.|.. +++|+.
T Consensus 14 ~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll~ 92 (481)
T 3mq4_A 14 EGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQ 92 (481)
T ss_dssp CCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGGG
T ss_pred CCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHHh
Confidence 567999999999752 58889999999999999988766 58999999999999998887 777764
No 24
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=98.27 E-value=4.9e-06 Score=56.60 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=54.3
Q ss_pred eeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhh
Q 041662 7 IPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILI 68 (70)
Q Consensus 7 ~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li 68 (70)
.+++||+|++++. ..|.....++++|++++|......+.+++|.+.|+++++-.+.. +.+|+
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~ 68 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFV 68 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHh
Confidence 4699999999865 57999999999999999987766677899999999999988877 67777
No 25
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=98.25 E-value=3.6e-06 Score=57.33 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=52.4
Q ss_pred CceeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 5 TTIPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 5 ~~~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
...+++||++++++. ..|...+.++++|++++|.. ..+.+++|.+.|+++++-.+.. +.+|++
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~--i~G~~i~l~~~D~~~~~~~~~~~~~~li~ 69 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDT--VAGKKIEVILKDDAAIPDNTKRLAQELIV 69 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSE--ETTEEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCC--CCCeEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 356899999999974 56999999999999998752 2357999999999999988887 677875
No 26
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=98.25 E-value=5.7e-06 Score=55.73 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=52.0
Q ss_pred eeEEEEEEeCCCc---hhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 8 PVNVGLVLDINGE---DGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 8 ~v~IG~i~d~~S~---iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
+++||++++++.+ .|.....++++|++++|+..-..+.+++|.+.|+++++-.+.. +.+|++
T Consensus 2 ~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~ 67 (346)
T 1usg_A 2 DIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVN 67 (346)
T ss_dssp CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 5899999999754 7999999999999999987644456899999999999988776 667764
No 27
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=98.25 E-value=4.5e-06 Score=57.39 Aligned_cols=62 Identities=24% Similarity=0.328 Sum_probs=52.0
Q ss_pred ceeeEEEEEEeCCCc---h-hHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 6 TIPVNVGLVLDINGE---D-GKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 6 ~~~v~IG~i~d~~S~---i-Gk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
+.+++||++++++.+ . |+..+.++++|+++++. ...+.+++|.+.|+++++-.+.. +.+|++
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~g--gi~G~~i~l~~~D~~~~~~~a~~~~~~li~ 68 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGG--KVNGKPIEVVYADHQNKADIAASKAREWMD 68 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTS--EETTEEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHhCC--CCCCeEEEEEEecCCCCHHHHHHHHHHHHh
Confidence 357999999999765 4 89999999999999943 23357899999999999998887 788875
No 28
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=98.17 E-value=5.4e-06 Score=57.21 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=51.1
Q ss_pred ceeeEEEEEEeCCCc---h-hHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 6 TIPVNVGLVLDINGE---D-GKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 6 ~~~v~IG~i~d~~S~---i-Gk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
..+++||++++++.+ . |+..+.++++|+++++. -..+.+++|.+.|+++++-.+.. +.+|++
T Consensus 4 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~g--gi~G~~i~l~~~D~~~~~~~a~~~~~~li~ 70 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGG--KALGQPVKLVSADYQMKTDVALSIAREWFD 70 (379)
T ss_dssp --CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTT--EETTEECEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCccccccccCHHHHHHHHHHHHHhcC--CCCCeEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457999999999765 4 89999999999999943 23357899999999999998887 788875
No 29
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=98.15 E-value=7.4e-06 Score=59.85 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=56.2
Q ss_pred CceeeEEEEEEeCCC-------------chhHHHHHHHHHHHhhhhcCCCCc-ceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 5 TTIPVNVGLVLDING-------------EDGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 5 ~~~~v~IG~i~d~~S-------------~iGk~~~~aiemAv~Dfn~~~~~~-~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
.++.+.||.+|.+.+ ..|.....||++|+|++|+++..+ +.+|.+++.|+.+++..|.. +++|+.
T Consensus 10 ~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll~ 89 (479)
T 3sm9_A 10 IEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVR 89 (479)
T ss_dssp ECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHHh
Confidence 366799999999851 278889999999999999987766 68999999999999999888 788875
No 30
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=97.95 E-value=3.4e-05 Score=53.39 Aligned_cols=64 Identities=14% Similarity=0.086 Sum_probs=51.2
Q ss_pred ceeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 6 TIPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 6 ~~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
+..++||++++++. ..|.....++++|++++|+..-..+.+++|.+.|+++++-.+.. +.+|++
T Consensus 5 ~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~ 72 (385)
T 1pea_A 5 QERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIR 72 (385)
T ss_dssp ---CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 45689999999864 48999999999999999987554456788899999999988776 677774
No 31
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=97.89 E-value=3.2e-05 Score=52.74 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=50.5
Q ss_pred CceeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 5 TTIPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 5 ~~~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
...+++||++++++. ..|...+.++++|++++|.- ..+.+++|.+.|+++++-.+.. +.+|++
T Consensus 13 ~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~--~~g~~~~l~~~d~~~~~~~~~~~~~~l~~ 79 (375)
T 4evq_A 13 QAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGK--LGGRSISFVKVDDESAPPKATELTTKLIQ 79 (375)
T ss_dssp --CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTE--ETTEEEEEEEEECTTCHHHHHHHHHCCCC
T ss_pred hCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCC--cCCEEEEEEEecCCCCHHHHHHHHHHHHh
Confidence 346799999999875 68999999999999999832 2246899999999999988877 566664
No 32
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=97.88 E-value=1.8e-05 Score=53.93 Aligned_cols=60 Identities=15% Similarity=0.240 Sum_probs=50.6
Q ss_pred CceeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhhC
Q 041662 5 TTIPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILIDQ 70 (70)
Q Consensus 5 ~~~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~~ 70 (70)
.+.+++||++++++. ..|...+.++++|+++++ +.+++|.+.|+++++-.+.. +.+|+++
T Consensus 24 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~------G~~i~l~~~d~~~~~~~~~~~~~~l~~~ 87 (386)
T 3sg0_A 24 AQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG------GEKVTYFALDDESDPTKAAQNARKLLSE 87 (386)
T ss_dssp -CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET------TEEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC------CEEEEEEEecCCCCHHHHHHHHHHHHhh
Confidence 356899999999976 478999999999999984 35899999999999988877 7788763
No 33
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=97.87 E-value=1.6e-05 Score=53.54 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=50.5
Q ss_pred CCceeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhhC
Q 041662 4 NTTIPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILIDQ 70 (70)
Q Consensus 4 ~~~~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~~ 70 (70)
..+.+++||++++++. ..|.....++++|+++++ +.+++|.+.|+++++-.+.. +.+|+++
T Consensus 3 aa~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~------g~~i~l~~~d~~~~~~~~~~~~~~l~~~ 67 (362)
T 3snr_A 3 AETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS------GHPIKIIVLDDGGDPTAATTNARRFVTE 67 (362)
T ss_dssp -CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET------TEEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC------CeEEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 3456899999999875 478899999999999984 35899999999999988877 6777753
No 34
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=97.48 E-value=0.00049 Score=50.41 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=52.8
Q ss_pred ceeeEEEEEEeCCC-----------------chhHHHHHHHHHHHhhhhcCCCCc-ceEEEEEeecCCCCHHHHHH-HHH
Q 041662 6 TIPVNVGLVLDING-----------------EDGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRDSKGDVVAAAA-AEI 66 (70)
Q Consensus 6 ~~~v~IG~i~d~~S-----------------~iGk~~~~aiemAv~Dfn~~~~~~-~t~l~l~~~DS~~d~~~aa~-A~~ 66 (70)
++-+.||.+|.+.+ ..|-....||.+|+|.+|+++..+ +.+|.+++.|+.+++-.|.. +++
T Consensus 15 ~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a~~ 94 (496)
T 3ks9_A 15 DGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIE 94 (496)
T ss_dssp CCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHHHH
T ss_pred CCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHHHH
Confidence 55689999998753 246678899999999999987666 58999999999999998888 788
Q ss_pred hh
Q 041662 67 LI 68 (70)
Q Consensus 67 Li 68 (70)
|+
T Consensus 95 ll 96 (496)
T 3ks9_A 95 FI 96 (496)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 35
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=97.36 E-value=0.00013 Score=49.94 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=37.9
Q ss_pred eeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHH
Q 041662 8 PVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAA 62 (70)
Q Consensus 8 ~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa 62 (70)
++|||++++++. ..|+..+-++++|+++ .+++|.+.|++++|..++
T Consensus 2 V~kIG~l~PlSG~~a~~G~~~~~g~~lA~~g---------~~i~l~~~D~~~~~~~aa 50 (327)
T 3ckm_A 2 VSQIGLLLPLSGDGQILGTTIQSGFNDAKGN---------STIPVQVFDTSMNSVQDI 50 (327)
T ss_dssp -CCEEEEECCSSTTHHHHHHHHHHHHHHHTT---------CCSCEEEEETTTSCHHHH
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHhCCC---------CCceEEEEeCCCCHHHHH
Confidence 579999999976 6799999999999862 356788999999997654
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=96.51 E-value=0.0031 Score=44.38 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=39.5
Q ss_pred EEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHHHHHhhh
Q 041662 10 NVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAAAEILID 69 (70)
Q Consensus 10 ~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~A~~Li~ 69 (70)
+||++++++. ..|+..+-++++|. .+.+++|.+.|+++++. ...+.+|++
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~---------~G~~i~l~~~D~~~~~a-~~~~~~l~~ 54 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK---------GNSTIPVQVFDTSMNSV-QDIIAQAKQ 54 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH---------TTCCSCEEEEETTTSCH-HHHHHHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc---------cCCCceEEEEECCCChH-HHHHHHHHH
Confidence 7999999986 68999999999997 13478899999999983 222556654
No 37
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=92.00 E-value=0.45 Score=33.22 Aligned_cols=56 Identities=7% Similarity=-0.076 Sum_probs=33.6
Q ss_pred ceeeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEee-cCCCCHHHHHH-HHHhh
Q 041662 6 TIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTR-DSKGDVVAAAA-AEILI 68 (70)
Q Consensus 6 ~~~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~-DS~~d~~~aa~-A~~Li 68 (70)
|..++||+||.-++- ..++.-|++..|.-+..+ +|+.++. -..+||+.+.. +-+++
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dp~~~~~~~C~~l 59 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHHLSV--VPRVELVAMNETDPKSIITRICDLM 59 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC---------CCS--EEEEEEEEECCCSHHHHHHHHHHHH
T ss_pred CCceEEEEEEcccch-----hhhhccccCccccccCCc--cceEEEEEecCCCHHHHHHHHHHHH
Confidence 668999999977665 778888999988765544 5554443 46789999876 55555
No 38
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=76.75 E-value=12 Score=24.98 Aligned_cols=65 Identities=9% Similarity=0.016 Sum_probs=38.7
Q ss_pred CCCceeeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhhC
Q 041662 3 KNTTIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILIDQ 70 (70)
Q Consensus 3 ~~~~~~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~~ 70 (70)
+.....++||++--..=+.=...+.+++-++++-- ..-+..+++.++|.+||+-.... +.+|+.+
T Consensus 3 ~~~~~~~~igi~q~~~hp~ld~~~~G~~~~L~~~G---~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~~ 68 (302)
T 3lkv_A 3 AIMAKTAKVAVSQIVEHPALDATRQGLLDGLKAKG---YEEGKNLEFDYKTAQGNPAIAVQIARQFVGE 68 (302)
T ss_dssp ----CCEEEEEEESCCCHHHHHHHHHHHHHHHHTT---CCBTTTEEEEEEECTTCHHHHHHHHHHHHTT
T ss_pred hhhcCCceEEEEEeecChhHHHHHHHHHHHHHhhC---cccCCcEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 34466899997743332322455556666665531 11123578899999999987776 7777653
No 39
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=65.77 E-value=25 Score=23.00 Aligned_cols=60 Identities=10% Similarity=0.029 Sum_probs=38.4
Q ss_pred ceeeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhh
Q 041662 6 TIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILI 68 (70)
Q Consensus 6 ~~~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li 68 (70)
+..-.||+|.+++.+.=.....+|+-+++... ...+..+.+.+.|+++++-.... ...|+
T Consensus 6 ~~t~~IGvi~~~~~p~~~~~~~gi~~~l~~~G---y~~g~~v~l~~~~~~~~~~~~~~~~~~l~ 66 (302)
T 2qh8_A 6 AKTAKVAVSQIVEHPALDATRQGLLDGLKAKG---YEEGKNLEFDYKTAQGNPAIAVQIARQFV 66 (302)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHHHHHHHTT---CCBTTTEEEEEEECTTCHHHHHHHHHHHH
T ss_pred cCCcEEEEEEeccChhHHHHHHHHHHHHHHcC---CCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 45688999988887776666666766665432 11123566778899999866544 34443
No 40
>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold, acid phosphatase, arabidopsis THAL thylakoid lumen, hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A 3ptj_A
Probab=45.28 E-value=37 Score=21.17 Aligned_cols=41 Identities=24% Similarity=0.169 Sum_probs=33.6
Q ss_pred EEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCC
Q 041662 13 LVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKG 56 (70)
Q Consensus 13 ~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~ 56 (70)
-|.|.........+..|+.++.++..... .++.+++.++-+
T Consensus 17 ~V~D~A~vLs~~~~~~l~~~l~~le~~t~---~qi~Vvtv~~~~ 57 (153)
T 3pvh_A 17 YVVDDAGVLSRVTKSDLKKLLSDLEYRKK---LRLNFITVRKLT 57 (153)
T ss_dssp SEEETTCCSCHHHHHHHHHHHHHHHHHHC---CEEEEEEESCCS
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHhhC---CEEEEEEEcCCC
Confidence 48899999999999999999999997554 577777777643
No 41
>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis}
Probab=37.94 E-value=70 Score=19.68 Aligned_cols=44 Identities=20% Similarity=0.111 Sum_probs=34.3
Q ss_pred EEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecC-CCCH
Q 041662 12 GLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDS-KGDV 58 (70)
Q Consensus 12 G~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS-~~d~ 58 (70)
+-|.|.........+..|+-++..+...+. .++.+.+.++ .+..
T Consensus 19 ~~V~D~a~~Ls~~~~~~L~~~l~~~e~~t~---~qi~Vv~v~~l~g~~ 63 (157)
T 2kw7_A 19 RLVTDEAGLLSNAQEEVMNGRLRAIRSSHA---VEFAVVTLPSIGDAP 63 (157)
T ss_dssp TCEEECSSCSCHHHHHHHHHHHHHHHHHTC---CEEEEEEESBCTTCC
T ss_pred ceEEcccccCCHHHHHHHHHHHHHHHHhhC---CeEEEEEEcCCCCCC
Confidence 358899999999999999999999998664 4777765554 4443
No 42
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=37.01 E-value=75 Score=19.75 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=30.8
Q ss_pred eEEEEEEe-CCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHH
Q 041662 9 VNVGLVLD-INGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVA 60 (70)
Q Consensus 9 v~IG~i~d-~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~ 60 (70)
++||+|+. ++++.-.....+++.+.++.. .++.+...+++.++-.
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g-------~~~~~~~~~~~~~~~~ 46 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEAG-------VTLLHRSTKDDGDIAG 46 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHHT-------CEEEECCCSSTTCHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHcC-------CEEEEECCCCCCCHHH
Confidence 47999995 666777777788888887752 3555555456666643
No 43
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=34.68 E-value=83 Score=19.56 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=39.1
Q ss_pred EEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCC-CCHHHHHHHHHhhh
Q 041662 12 GLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSK-GDVVAAAAAEILID 69 (70)
Q Consensus 12 G~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~-~d~~~aa~A~~Li~ 69 (70)
+-|.|.........+..++-.++++..... .++.+.+.++- |... ...|.+|.+
T Consensus 15 ~~V~D~A~vLs~~~~~~L~~~l~~l~~~tg---~qi~VvtV~sl~g~~i-e~yA~~l~~ 69 (148)
T 2kpt_A 15 DNVTDYTGQISSSDITNIQAAIDDVKASEQ---KVIFVVFLSSFDGVDP-ETWTQQALQ 69 (148)
T ss_dssp CSEEESSSCSCHHHHHHHHHHHHHHHHHSC---CEEEEEECSCCTTTCH-HHHHHHHHH
T ss_pred ceeeeCCCCCCHHHHHHHHHHHHHHHHhhC---CEEEEEEECCCCCCCH-HHHHHHHHH
Confidence 458899999999999999999999997654 46666666554 4432 234666654
No 44
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=30.52 E-value=39 Score=23.26 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=34.8
Q ss_pred EEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcc---eEEEEEeecCCCCHHHHHH-HHHhh
Q 041662 12 GLVLDINGEDGKIALSCINMSLSDFYNSNSHYK---TRLLLNTRDSKGDVVAAAA-AEILI 68 (70)
Q Consensus 12 G~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~---t~l~l~~~DS~~d~~~aa~-A~~Li 68 (70)
-+||.+. ..+..+-+||+++...... +-+.+.++|+.-+...||. .++|-
T Consensus 126 DvViTcE-------ERvfD~Vvedl~~R~~~~~~pvHVINvdIkDn~EeA~~Ga~~ileL~ 179 (214)
T 4h3k_B 126 DLILTCE-------ERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELC 179 (214)
T ss_dssp SEEEESS-------HHHHHHHHHHHHHSCCSSCCEEEEEEECCCSSHHHHHHHHHHHHHHH
T ss_pred cEEEEcc-------chhHHHHHHHHHhcCCCCCceEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 4556554 3458888999998665443 4567778888888888777 56664
No 45
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=26.28 E-value=1.3e+02 Score=19.28 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=33.1
Q ss_pred eeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH
Q 041662 8 PVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA 63 (70)
Q Consensus 8 ~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~ 63 (70)
+-.||+|-+++.+.=-....+|+-+++...- . +..+.+.+.|+++++-....
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy--~--g~~v~l~~~~~~~~~~~~~~ 53 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLAEEGY--K--DDQVKIDFMNSEGDQSKVAT 53 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHHHTTC--C--GGGEEEEEEECTTCHHHHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHHHcCC--C--CCceEEEEecCCCCHHHHHH
Confidence 4579999776666555555666666654321 1 23566778899998865544
No 46
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=23.62 E-value=38 Score=18.87 Aligned_cols=21 Identities=10% Similarity=-0.047 Sum_probs=18.2
Q ss_pred CCchhHHHHHHHHHHHhhhhc
Q 041662 18 NGEDGKIALSCINMSLSDFYN 38 (70)
Q Consensus 18 ~S~iGk~~~~aiemAv~Dfn~ 38 (70)
+..+++.++.+|.-++++|-.
T Consensus 20 ~~~is~~A~~~i~~~~~~Fi~ 40 (76)
T 3b0c_W 20 HLRLAANTDLLVHLSFLLFLH 40 (76)
T ss_dssp TCEECTTHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHH
Confidence 457899999999999999974
No 47
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=23.48 E-value=23 Score=20.88 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=13.8
Q ss_pred EEEEEeecCCCCHHHHH
Q 041662 46 RLLLNTRDSKGDVVAAA 62 (70)
Q Consensus 46 ~l~l~~~DS~~d~~~aa 62 (70)
++.+.++|.+|.|+-+|
T Consensus 2 ~~~v~V~d~~GkPV~gA 18 (82)
T 3e8v_A 2 KGSVLVTDAEGQPVADA 18 (82)
T ss_dssp EEEEEEECTTSCBCTTC
T ss_pred cEEEEEEcCCCCCCCCC
Confidence 67888999999987654
No 48
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=23.04 E-value=55 Score=17.51 Aligned_cols=21 Identities=10% Similarity=-0.031 Sum_probs=17.8
Q ss_pred CCchhHHHHHHHHHHHhhhhc
Q 041662 18 NGEDGKIALSCINMSLSDFYN 38 (70)
Q Consensus 18 ~S~iGk~~~~aiemAv~Dfn~ 38 (70)
+.++.+.+..++.-|+++|-.
T Consensus 17 ~~ris~~A~~~l~~a~e~fi~ 37 (68)
T 1b67_A 17 AERVSDDARIALAKVLEEMGE 37 (68)
T ss_dssp CSEECHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 467899999999999999864
No 49
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=22.84 E-value=61 Score=22.05 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=29.0
Q ss_pred HHHHHHHhhhhcCCCCcc---eEEEEEeecCCCCHHHHHH-HHHhh
Q 041662 27 SCINMSLSDFYNSNSHYK---TRLLLNTRDSKGDVVAAAA-AEILI 68 (70)
Q Consensus 27 ~aiemAv~Dfn~~~~~~~---t~l~l~~~DS~~d~~~aa~-A~~Li 68 (70)
.+...-+||+++....+. +-+.+-++|+.-+...||. +++|.
T Consensus 118 RvfD~VvedL~~R~~~~~~pVHViNvDIkDn~EeA~~Ga~~ileL~ 163 (198)
T 3p9y_A 118 RVYDLVVMHMESMESVDNRPVHVLNVDVVNNAEDALMGAFVITDMI 163 (198)
T ss_dssp HHHHHHHHHHHTSCCSSCCEEEEEECCCCSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcccCcCceEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence 358888999998766543 4456666677777777776 56654
No 50
>2auh_B Growth factor receptor-bound protein 14; tyrosine kinase, BPS region, transferase/signaling protein complex; HET: PTR; 3.20A {Homo sapiens}
Probab=22.39 E-value=27 Score=19.56 Aligned_cols=27 Identities=7% Similarity=0.324 Sum_probs=22.0
Q ss_pred EEEEeCCCchhHHH---HHHHHHHHhhhhc
Q 041662 12 GLVLDINGEDGKIA---LSCINMSLSDFYN 38 (70)
Q Consensus 12 G~i~d~~S~iGk~~---~~aiemAv~Dfn~ 38 (70)
=|-.||+...|++. +.|...|+|...+
T Consensus 16 lVAMDFsG~~GRvIenP~Ea~s~a~eeg~~ 45 (59)
T 2auh_B 16 LVAMDFSGQKSRVIENPTEALSVAVEEGLA 45 (59)
T ss_dssp CEEEECSSSSCCBCCCHHHHHHHHHHHHHH
T ss_pred eEEEeecCCccceecChHHHHHHHHHhhhh
Confidence 36789999889877 7788888888875
No 51
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=20.12 E-value=1.5e+02 Score=17.79 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=20.3
Q ss_pred eeEEEEEEeCCCchhHH----HHHHHHHHHhhh
Q 041662 8 PVNVGLVLDINGEDGKI----ALSCINMSLSDF 36 (70)
Q Consensus 8 ~v~IG~i~d~~S~iGk~----~~~aiemAv~Df 36 (70)
++.|-.++|.+..++.. ++.++...++.|
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l 34 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKC 34 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 46788999999988864 445555555555
Done!