Query 041662
Match_columns 70
No_of_seqs 104 out of 235
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 15:59:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041662.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041662hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1usga_ c.93.1.1 (A:) Leucine- 98.9 2E-09 1.5E-13 71.2 7.7 63 8-70 2-68 (346)
2 d1jdpa_ c.93.1.1 (A:) Hormone 98.8 1.1E-08 8.3E-13 67.6 7.9 65 4-68 3-76 (401)
3 d1qo0a_ c.93.1.1 (A:) Amide re 98.7 1.4E-08 9.9E-13 69.0 6.6 60 9-69 3-66 (373)
4 d1dp4a_ c.93.1.1 (A:) Hormone 98.7 3.1E-08 2.2E-12 66.3 7.3 62 8-69 2-74 (425)
5 d1ewka_ c.93.1.1 (A:) Metabotr 98.0 1.2E-05 8.8E-10 56.2 8.0 63 6-68 7-88 (477)
6 d3ckma1 c.93.1.1 (A:257-573) Y 97.7 1.2E-05 8.4E-10 51.7 3.3 44 10-62 2-48 (317)
7 d2fvya1 c.93.1.1 (A:2-306) Gal 71.6 7.9 0.00058 23.2 6.9 53 9-69 2-56 (305)
8 d1mjna_ c.62.1.1 (A:) Integrin 58.1 14 0.001 21.3 5.9 45 7-51 1-45 (179)
9 d1jx6a_ c.93.1.1 (A:) Quorum-s 40.1 37 0.0027 20.9 8.9 52 6-62 38-91 (338)
10 d1jpdx2 d.54.1.1 (X:-2-113) L- 34.1 10 0.00075 20.4 1.9 18 24-41 89-106 (116)
11 d1mf7a_ c.62.1.1 (A:) Integrin 27.5 52 0.0038 18.7 5.7 47 8-54 5-51 (194)
12 d1nu5a2 d.54.1.1 (A:1-126) Chl 27.4 18 0.0013 19.8 2.1 19 23-41 98-116 (126)
13 d1atza_ c.62.1.1 (A:) von Will 25.3 51 0.0037 18.8 4.1 30 8-37 2-31 (184)
14 d1ixca2 c.94.1.1 (A:90-294) Ly 23.1 26 0.0019 18.6 2.3 37 7-52 2-38 (205)
15 d1r6wa2 d.54.1.1 (A:-2-99) O-s 23.0 26 0.0019 18.9 2.2 16 24-39 84-99 (101)
16 d1jpma2 d.54.1.1 (A:1-125) L-A 23.0 21 0.0015 19.3 1.8 18 23-40 97-114 (125)
17 d1q0pa_ c.62.1.1 (A:) Compleme 22.4 65 0.0047 18.2 4.2 40 9-50 2-45 (209)
18 d2axtf1 f.23.38.1 (F:11-45) Cy 22.2 14 0.001 17.4 0.8 11 59-69 23-34 (35)
19 d1ijba_ c.62.1.1 (A:) von Will 21.9 71 0.0052 18.4 6.2 45 7-51 12-58 (202)
20 d2mnra2 d.54.1.1 (A:3-132) Man 21.6 25 0.0018 18.8 2.0 20 22-41 98-117 (130)
21 d1l5aa1 c.43.1.2 (A:1-174) Vib 21.5 27 0.002 19.7 2.2 39 6-47 18-56 (174)
22 d1wufa2 d.54.1.1 (A:1001-1126) 21.4 25 0.0018 19.3 2.0 18 23-40 98-115 (126)
23 d2chra2 d.54.1.1 (A:1-126) Chl 21.0 28 0.002 18.9 2.1 19 23-41 98-116 (126)
24 d2asba2 d.52.3.1 (A:184-262) T 20.8 55 0.004 17.7 3.3 23 41-63 31-53 (79)
25 d2gl5a2 d.54.1.1 (A:1-122) Put 20.8 31 0.0022 18.8 2.3 20 21-40 92-111 (122)
26 d1hh2p2 d.52.3.1 (P:199-276) T 20.6 55 0.004 17.7 3.3 23 41-63 31-53 (78)
27 d1bqga2 d.54.1.1 (A:12-143) D- 20.4 27 0.002 19.3 2.0 19 22-40 104-122 (132)
28 d1wuea2 d.54.1.1 (A:1001-1126) 20.3 26 0.0019 18.6 1.8 18 23-40 98-115 (126)
29 d1tzza2 d.54.1.1 (A:1006-1145) 20.2 27 0.002 19.5 2.0 16 24-39 109-124 (140)
30 d1cwva3 b.1.14.1 (A:693-795) I 20.1 19 0.0014 19.9 1.2 17 45-61 27-43 (103)
No 1
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]}
Probab=98.92 E-value=2e-09 Score=71.20 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=56.4
Q ss_pred eeEEEEEEeCC---CchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhhC
Q 041662 8 PVNVGLVLDIN---GEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILIDQ 70 (70)
Q Consensus 8 ~v~IG~i~d~~---S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~~ 70 (70)
+|+||++++++ +..|+..+.+++||++++|+..-..+.+|+|.++|+.|+|-.+.. +.+|+++
T Consensus 2 ~I~IG~~~plsG~~a~~G~~~~~g~~lav~~iN~~ggi~G~~i~lv~~D~~~~p~~a~~~~~~li~~ 68 (346)
T d1usga_ 2 DIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVND 68 (346)
T ss_dssp CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred cEEEEEEeCCCCchHHhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 68999999997 488999999999999999998777778999999999999999888 6888764
No 2
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.79 E-value=1.1e-08 Score=67.64 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=51.1
Q ss_pred CCceeeEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCc-----ceEEEEEeecCCCCHHHHHH-HHHhh
Q 041662 4 NTTIPVNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHY-----KTRLLLNTRDSKGDVVAAAA-AEILI 68 (70)
Q Consensus 4 ~~~~~v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~-----~t~l~l~~~DS~~d~~~aa~-A~~Li 68 (70)
..|.+++||++++++. ..|..-+.|++||++++|++.... +.++++.++|++|++-.+.. +.+|.
T Consensus 3 ~~~~~i~igvllP~tg~~~~~~~~~~~a~~lAv~~iN~~g~~~~~~~~g~~i~~~~~D~~~~~~~~~~~~~~l~ 76 (401)
T d1jdpa_ 3 LPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVA 76 (401)
T ss_dssp CCCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHH
T ss_pred CCCCccEEEEEECCCCchhhhhHHHHHHHHHHHHHHHhcCCccccCCCCcEEEEEEEeCCCCHHHHHHHHHHHH
Confidence 4688999999999996 668888999999999999865421 47999999999999976665 45543
No 3
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=98.71 E-value=1.4e-08 Score=69.02 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=54.4
Q ss_pred eEEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 9 VNVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 9 v~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
| ||++++++. ..|+..+.++++|++++|+..-..+.+|+|.++|+++++-.|+. +.+|++
T Consensus 3 v-IG~~~p~tG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~i~l~~~D~~~~~~~a~~~a~~Li~ 66 (373)
T d1qo0a_ 3 L-IGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIR 66 (373)
T ss_dssp E-EEEECCSSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred E-EEEEcCCcCchhhhhHHHHHHHHHHHHHHHhcCCcCCeEEEEEEEcCCCCHHHHHHHHHHHHh
Confidence 6 999999984 89999999999999999997766678999999999999999988 788875
No 4
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=98.67 E-value=3.1e-08 Score=66.33 Aligned_cols=62 Identities=15% Similarity=0.046 Sum_probs=51.7
Q ss_pred eeEEEEEEeCCCc----hhHHHHHHHHHHHhhhhcCCCCc-ceEEEEEeecCCC-----CHHHHHH-HHHhhh
Q 041662 8 PVNVGLVLDINGE----DGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRDSKG-----DVVAAAA-AEILID 69 (70)
Q Consensus 8 ~v~IG~i~d~~S~----iGk~~~~aiemAv~Dfn~~~~~~-~t~l~l~~~DS~~-----d~~~aa~-A~~Li~ 69 (70)
.++||++|.++.. .|.....||++|++++|++...+ +.+|+++++|+++ ++..++. |.+|+.
T Consensus 2 ~i~vg~~lPltg~~~~~~~~~~~~A~~lAv~~IN~~~~~l~g~~l~~~~~D~~~~~~~~~~~~~~~~a~~~~~ 74 (425)
T d1dp4a_ 2 DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKW 74 (425)
T ss_dssp EEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHH
T ss_pred cEEEEEEECCCCcccccchhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEECCCcccccCHHHHHHHHHHHHh
Confidence 5899999998763 47888889999999999987766 6899999999974 6777777 777764
No 5
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=98.00 E-value=1.2e-05 Score=56.18 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=52.2
Q ss_pred ceeeEEEEEEeCCC-----------------chhHHHHHHHHHHHhhhhcCCCCc-ceEEEEEeecCCCCHHHHHH-HHH
Q 041662 6 TIPVNVGLVLDING-----------------EDGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRDSKGDVVAAAA-AEI 66 (70)
Q Consensus 6 ~~~v~IG~i~d~~S-----------------~iGk~~~~aiemAv~Dfn~~~~~~-~t~l~l~~~DS~~d~~~aa~-A~~ 66 (70)
.+-+-||.+|++.. .-|=....||.+|+|++|+++..| +.+|.++++|+.+++..|.. +++
T Consensus 7 ~Gd~~iGGlFp~h~~~~~~~~~~~~c~~~~~~~g~~~~~Am~~Aie~IN~~~~lLPn~tLg~~i~Dtc~~~~~a~~~~~~ 86 (477)
T d1ewka_ 7 DGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIE 86 (477)
T ss_dssp CCSEEEEEEECSBCCCCTTTGGGTCCCCBCTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHH
T ss_pred CCCEEEEEEEECcCcCCCCCCCccccccccccccHHHHHHHHHHHHHHhCCCCcCCCCEEEEEEEEcCCChHHHHHHHHH
Confidence 45688999998732 225556779999999999988777 58999999999999999988 788
Q ss_pred hh
Q 041662 67 LI 68 (70)
Q Consensus 67 Li 68 (70)
|+
T Consensus 87 ~i 88 (477)
T d1ewka_ 87 FI 88 (477)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 6
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=97.70 E-value=1.2e-05 Score=51.72 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=37.6
Q ss_pred EEEEEEeCCC---chhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHH
Q 041662 10 NVGLVLDING---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAA 62 (70)
Q Consensus 10 ~IG~i~d~~S---~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa 62 (70)
|||++++++. .+|+..+.++++|+++ .+++|.++|++++|..++
T Consensus 2 kIG~~lPlSG~~a~~G~~~~~g~~lA~~~---------~~i~l~~~D~~~~~~~aa 48 (317)
T d3ckma1 2 QIGLLLPLSGDGQILGTTIQSGFNDAKGN---------STIPVQVFDTSMNSVQDI 48 (317)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHHTT---------CCSCEEEEETTTSCHHHH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHhcCC---------CCceEEEEcCCCCHHHHH
Confidence 7999999986 6799999999999874 247789999999996654
No 7
>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}
Probab=71.58 E-value=7.9 Score=23.19 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=32.9
Q ss_pred eEEEEEEeC-CCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHHH-HHHhhh
Q 041662 9 VNVGLVLDI-NGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAAA-AEILID 69 (70)
Q Consensus 9 v~IG~i~d~-~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa~-A~~Li~ 69 (70)
+|||+++.- +.+.=...+..|+.+.+. +. -+.|.+.|+++|+-.-.. ..+||.
T Consensus 2 ~kIgv~~~~~~~~f~~~i~~gi~~~a~~----~~----~~~l~~~~~~~~~~~q~~~i~~li~ 56 (305)
T d2fvya1 2 TRIGVTIYKYDDNFMSVVRKAIEQDAKA----AP----DVQLLMNDSQNDQSKQNDQIDVLLA 56 (305)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT----CT----TEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHH----cC----CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 799997755 556666666667666542 22 234567889988854443 355543
No 8
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.08 E-value=14 Score=21.33 Aligned_cols=45 Identities=11% Similarity=-0.051 Sum_probs=29.7
Q ss_pred eeeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEe
Q 041662 7 IPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNT 51 (70)
Q Consensus 7 ~~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~ 51 (70)
+++.|..++|.++.+|+.....+..+++++-..-..-.+|+.+..
T Consensus 1 g~~DivfllD~S~Si~~~~f~~~k~f~~~~i~~i~~~~~rvgvv~ 45 (179)
T d1mjna_ 1 GNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQ 45 (179)
T ss_dssp CCEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEE
T ss_pred CCeEEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 357899999999999987666666666666553221235655543
No 9
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}
Probab=40.08 E-value=37 Score=20.86 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=35.3
Q ss_pred ceeeEEEEEEeC--CCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecCCCCHHHHH
Q 041662 6 TIPVNVGLVLDI--NGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDSKGDVVAAA 62 (70)
Q Consensus 6 ~~~v~IG~i~d~--~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS~~d~~~aa 62 (70)
..+++||+|+.- ++..=..-..+|+.++++.. +...+...+.+++.|+-.=.
T Consensus 38 ~k~~~I~vi~p~~~~~~f~~~~~~~~~~~~~~~g-----~~~~i~~~~~~s~~d~~~q~ 91 (338)
T d1jx6a_ 38 QRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLN-----INYQLNQVFTRPNADIKQQS 91 (338)
T ss_dssp SSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTT-----CCEEEEEEECCTTCCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHcC-----CcEEEEEEecCCCCCHHHHH
Confidence 456899999964 35554555667888887764 23467677888998875433
No 10
>d1jpdx2 d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}
Probab=34.13 E-value=10 Score=20.44 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhhhcCCC
Q 041662 24 IALSCINMSLSDFYNSNS 41 (70)
Q Consensus 24 ~~~~aiemAv~Dfn~~~~ 41 (70)
.++.|++||+-|..+...
T Consensus 89 ~a~aaid~AlwDl~~K~~ 106 (116)
T d1jpdx2 89 AARNALDCALWDLAARRQ 106 (116)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 578999999999987554
No 11
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.49 E-value=52 Score=18.75 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=30.2
Q ss_pred eeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEeecC
Q 041662 8 PVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRDS 54 (70)
Q Consensus 8 ~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~DS 54 (70)
++.|=.++|.+..++.....-+..+++++-..-..-.+|+.|..-.+
T Consensus 5 ~~DivfvlD~S~s~~~~~~~~~k~f~~~iv~~l~~~~~rv~vv~fs~ 51 (194)
T d1mf7a_ 5 DSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSE 51 (194)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESS
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCcCCceEEEEEEec
Confidence 57899999999998877655566666666432222246666554444
No 12
>d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]}
Probab=27.41 E-value=18 Score=19.83 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhhhcCCC
Q 041662 23 KIALSCINMSLSDFYNSNS 41 (70)
Q Consensus 23 k~~~~aiemAv~Dfn~~~~ 41 (70)
..++.|++||+=|.++...
T Consensus 98 ~~A~aaid~AlwDl~~K~~ 116 (126)
T d1nu5a2 98 LSAKAAIDIALHDLKARAL 116 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHc
Confidence 5688999999999987543
No 13
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.34 E-value=51 Score=18.82 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=21.9
Q ss_pred eeEEEEEEeCCCchhHHHHHHHHHHHhhhh
Q 041662 8 PVNVGLVLDINGEDGKIALSCINMSLSDFY 37 (70)
Q Consensus 8 ~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn 37 (70)
++.|..++|-+..+|.....-+..++..+-
T Consensus 2 PlDivfliD~S~s~~~~~f~~~k~~v~~~i 31 (184)
T d1atza_ 2 PLDVILLLDGSSSFPASYFDEMKSFAKAFI 31 (184)
T ss_dssp CEEEEEEEECSSSSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 678999999999888776555555555543
No 14
>d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=23.11 E-value=26 Score=18.64 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=23.3
Q ss_pred eeeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEEEEEee
Q 041662 7 IPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTR 52 (70)
Q Consensus 7 ~~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l~l~~~ 52 (70)
+.++||++-.+.. .-+--++.+|...+|.. +++++..
T Consensus 2 G~lrIg~~~~~~~-------~~Lp~~l~~f~~~~P~v--~l~i~~~ 38 (205)
T d1ixca2 2 GELSVAYFGTPIY-------RSLPLLLRAFLTSTPTA--TVSLTHM 38 (205)
T ss_dssp EEEEEEECSGGGG-------THHHHHHHHHHHHCTTE--EEEEEEC
T ss_pred eEEEEEEEhHHHH-------HHHHHHHHHHHHHCCCc--EEEEEEC
Confidence 4678887643322 22556799999999953 5555443
No 15
>d1r6wa2 d.54.1.1 (A:-2-99) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]}
Probab=23.01 E-value=26 Score=18.89 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhhcC
Q 041662 24 IALSCINMSLSDFYNS 39 (70)
Q Consensus 24 ~~~~aiemAv~Dfn~~ 39 (70)
.++-|++||+-|.++.
T Consensus 84 s~~~ale~Al~dL~~~ 99 (101)
T d1r6wa2 84 SVAFGVSCALAELTDT 99 (101)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3678999999998764
No 16
>d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
Probab=22.97 E-value=21 Score=19.32 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhhcCC
Q 041662 23 KIALSCINMSLSDFYNSN 40 (70)
Q Consensus 23 k~~~~aiemAv~Dfn~~~ 40 (70)
..++.|++||+=|.++..
T Consensus 97 ~~a~aaid~AlwDl~~K~ 114 (125)
T d1jpma2 97 MSAKAAVEMALYDGWAQM 114 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 457899999999998744
No 17
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.39 E-value=65 Score=18.16 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=24.3
Q ss_pred eEEEEEEeCCCchhHHH----HHHHHHHHhhhhcCCCCcceEEEEE
Q 041662 9 VNVGLVLDINGEDGKIA----LSCINMSLSDFYNSNSHYKTRLLLN 50 (70)
Q Consensus 9 v~IG~i~d~~S~iGk~~----~~aiemAv~Dfn~~~~~~~t~l~l~ 50 (70)
..|..++|.+..++..- |.+++..++.|....+ ++|+.+.
T Consensus 2 lDivfvlD~SgSm~~~~~~~~k~~~~~li~~l~~~~~--~~rv~lv 45 (209)
T d1q0pa_ 2 MNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGV--KPRYGLV 45 (209)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTC--CCEEEEE
T ss_pred cCEEEEEeCCCCCChHHHHHHHHHHHHHHHhcccCCC--CcEEEEE
Confidence 46889999999887644 4455555555543332 2454443
No 18
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.19 E-value=14 Score=17.36 Aligned_cols=11 Identities=27% Similarity=0.196 Sum_probs=7.9
Q ss_pred HHHHH-HHHhhh
Q 041662 59 VAAAA-AEILID 69 (70)
Q Consensus 59 ~~aa~-A~~Li~ 69 (70)
|++++ |.|+|.
T Consensus 23 FlGai~aMqfiq 34 (35)
T d2axtf1 23 FLGAIAAMQFIQ 34 (35)
T ss_dssp HHHHHHHHTTCC
T ss_pred hHhHHHHHHHhh
Confidence 56777 788775
No 19
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.87 E-value=71 Score=18.36 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=29.5
Q ss_pred eeeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCC--CcceEEEEEe
Q 041662 7 IPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNS--HYKTRLLLNT 51 (70)
Q Consensus 7 ~~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~--~~~t~l~l~~ 51 (70)
.++.|..++|.++.+|.....-+..++.++-..-. ..++|+.|..
T Consensus 12 ~~~Dl~fvlD~S~S~~~~~f~~~k~fv~~~i~~l~~~~~~~rvavv~ 58 (202)
T d1ijba_ 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVE 58 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEE
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcEEEEEE
Confidence 35899999999999987766667776666654321 1135555543
No 20
>d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]}
Probab=21.58 E-value=25 Score=18.77 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHhhhhcCCC
Q 041662 22 GKIALSCINMSLSDFYNSNS 41 (70)
Q Consensus 22 Gk~~~~aiemAv~Dfn~~~~ 41 (70)
...++.|+++|+=|.++...
T Consensus 98 ~~~a~aaid~AlwDl~~K~~ 117 (130)
T d2mnra2 98 IRMAAAGIDMAAWDALGKVH 117 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34788999999999997543
No 21
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=21.52 E-value=27 Score=19.69 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=30.5
Q ss_pred ceeeEEEEEEeCCCchhHHHHHHHHHHHhhhhcCCCCcceEE
Q 041662 6 TIPVNVGLVLDINGEDGKIALSCINMSLSDFYNSNSHYKTRL 47 (70)
Q Consensus 6 ~~~v~IG~i~d~~S~iGk~~~~aiemAv~Dfn~~~~~~~t~l 47 (70)
+..-||+..+.+.. ..-...++.|+..+-..|+.|+|++
T Consensus 18 ~~~yni~~~~~i~g---~ld~~~l~~A~~~l~~rh~~LRt~f 56 (174)
T d1l5aa1 18 INLDTVAHSLRLTG---PLDTTLLLRALHLTVSEIDLFRARF 56 (174)
T ss_dssp SCCSEEEEEEEEES---SCCHHHHHHHHHHHHHTCGGGGEEE
T ss_pred CCeeeccEEEEEcC---CCCHHHHHHHHHHHHHhCchheEEE
Confidence 34578888888864 4456678999999999999888765
No 22
>d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]}
Probab=21.45 E-value=25 Score=19.31 Aligned_cols=18 Identities=11% Similarity=0.318 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhhhcCC
Q 041662 23 KIALSCINMSLSDFYNSN 40 (70)
Q Consensus 23 k~~~~aiemAv~Dfn~~~ 40 (70)
..++.|++||+=|.++..
T Consensus 98 ~~A~aaid~AlwDl~~K~ 115 (126)
T d1wufa2 98 EMAKAAVELAVWDAFAKM 115 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 457899999999998744
No 23
>d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=21.03 E-value=28 Score=18.93 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhcCCC
Q 041662 23 KIALSCINMSLSDFYNSNS 41 (70)
Q Consensus 23 k~~~~aiemAv~Dfn~~~~ 41 (70)
..++.|++||+=|..+...
T Consensus 98 ~~A~aaid~AlwDl~~K~~ 116 (126)
T d2chra2 98 ASAKAAVEMALLDLKARAL 116 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHc
Confidence 5689999999999987443
No 24
>d2asba2 d.52.3.1 (A:184-262) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.83 E-value=55 Score=17.71 Aligned_cols=23 Identities=4% Similarity=0.086 Sum_probs=20.1
Q ss_pred CCcceEEEEEeecCCCCHHHHHH
Q 041662 41 SHYKTRLLLNTRDSKGDVVAAAA 63 (70)
Q Consensus 41 ~~~~t~l~l~~~DS~~d~~~aa~ 63 (70)
|+.+||+.+...|.+=||+.|..
T Consensus 31 pG~RtKVAV~s~~~~vDpvGacv 53 (79)
T d2asba2 31 AGHRSKIAVRSNVAGLNAKGACI 53 (79)
T ss_dssp TTTEEEEEEEESSTTCCHHHHHH
T ss_pred CCceeEEEEEecCCCCCceeEEE
Confidence 67779999999999999988765
No 25
>d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}
Probab=20.81 E-value=31 Score=18.78 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHhhhhcCC
Q 041662 21 DGKIALSCINMSLSDFYNSN 40 (70)
Q Consensus 21 iGk~~~~aiemAv~Dfn~~~ 40 (70)
+...++.|+++|+=|.++..
T Consensus 92 ~~~~a~aaid~AlwDl~~K~ 111 (122)
T d2gl5a2 92 VFYAGMSAIDIALWDIKGKY 111 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHH
Confidence 34568999999999998744
No 26
>d1hh2p2 d.52.3.1 (P:199-276) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]}
Probab=20.61 E-value=55 Score=17.68 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.9
Q ss_pred CCcceEEEEEeecCCCCHHHHHH
Q 041662 41 SHYKTRLLLNTRDSKGDVVAAAA 63 (70)
Q Consensus 41 ~~~~t~l~l~~~DS~~d~~~aa~ 63 (70)
|+.+||+.+...|.+=||+.|..
T Consensus 31 pG~RtKVAV~s~~~~iDpvGacV 53 (78)
T d1hh2p2 31 PGVRTKVAVASNDPNVDPIGACI 53 (78)
T ss_dssp TTTEEEEEEEESSTTSCHHHHHH
T ss_pred CCceEEEEEEecCCCCCeeEEEE
Confidence 67779999999999999988764
No 27
>d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]}
Probab=20.36 E-value=27 Score=19.26 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHhhhhcCC
Q 041662 22 GKIALSCINMSLSDFYNSN 40 (70)
Q Consensus 22 Gk~~~~aiemAv~Dfn~~~ 40 (70)
-..++.|++||+=|..+..
T Consensus 104 ~~~A~aaid~AlwDl~gK~ 122 (132)
T d1bqga2 104 AVHAVTAVESALLDLLGQH 122 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3468999999999998744
No 28
>d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]}
Probab=20.32 E-value=26 Score=18.60 Aligned_cols=18 Identities=11% Similarity=0.322 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhhcCC
Q 041662 23 KIALSCINMSLSDFYNSN 40 (70)
Q Consensus 23 k~~~~aiemAv~Dfn~~~ 40 (70)
..++.|++||+=|..+..
T Consensus 98 ~~a~aaid~AlwDl~ak~ 115 (126)
T d1wuea2 98 WMGKAALETAIWDLYAKR 115 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 457889999999998743
No 29
>d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]}
Probab=20.16 E-value=27 Score=19.45 Aligned_cols=16 Identities=25% Similarity=0.384 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhhhcC
Q 041662 24 IALSCINMSLSDFYNS 39 (70)
Q Consensus 24 ~~~~aiemAv~Dfn~~ 39 (70)
.++.|++||+=|..+.
T Consensus 109 ~A~aaiDiAlWDl~gK 124 (140)
T d1tzza2 109 VAVGTIDMAVWDAVAK 124 (140)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5899999999999874
No 30
>d1cwva3 b.1.14.1 (A:693-795) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=20.12 E-value=19 Score=19.91 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=15.0
Q ss_pred eEEEEEeecCCCCHHHH
Q 041662 45 TRLLLNTRDSKGDVVAA 61 (70)
Q Consensus 45 t~l~l~~~DS~~d~~~a 61 (70)
..|.+.++|.+|+|+.+
T Consensus 27 ~tlt~tv~D~~GNpv~g 43 (103)
T d1cwva3 27 STLSFVPVDKNGHFISG 43 (103)
T ss_dssp EEEEEECBCTTSCBCCS
T ss_pred EEEEEEEEcCCCCCcCC
Confidence 78999999999998755
Done!