BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041663
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2MEV|2 Chain 2, Structural Refinement And Analysis Of Mengo Virus
pdb|1MEC|2 Chain 2, Conformational Variability Of A Picornavirus Capsid: Ph-
Dependent Structural Changes Of Mengo Virus Related To
Its Host Receptor Attachment Site And Disassembly
Length = 256
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 66 MCHIASGWLYGGIYRSKLRRHYSLP-----EASCSDSLIHCCCRACALTQEYTELKIRGW 120
+ H+ SG GG++ + LRRHY + + C+ S H + EY L +
Sbjct: 84 LPHVLSG-EDGGVFGATLRRHYLVKTGWRVQVQCNASQFHAGSLLVFMAPEYPTLDVF-- 140
Query: 121 KANVEKWNREGL 132
A +W+++ L
Sbjct: 141 -AMDNRWSKDNL 151
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 99 IHCCCRACALTQEYTELKIRGWKANVEKWNREGLE 133
++ CR AL +E+ KI G + W GLE
Sbjct: 163 LYIACRQLALAEEFIRAKIGGAVGTMASWGELGLE 197
>pdb|4HUH|A Chain A, Structure Of The Bacteriophage T4 Tail Terminator Protein,
Gp15 (c- Terminal Truncation Mutant 1-261).
pdb|4HUH|B Chain B, Structure Of The Bacteriophage T4 Tail Terminator Protein,
Gp15 (c- Terminal Truncation Mutant 1-261).
pdb|4HUH|C Chain C, Structure Of The Bacteriophage T4 Tail Terminator Protein,
Gp15 (c- Terminal Truncation Mutant 1-261).
pdb|4HUH|D Chain D, Structure Of The Bacteriophage T4 Tail Terminator Protein,
Gp15 (c- Terminal Truncation Mutant 1-261).
pdb|4HUH|E Chain E, Structure Of The Bacteriophage T4 Tail Terminator Protein,
Gp15 (c- Terminal Truncation Mutant 1-261).
pdb|4HUH|F Chain F, Structure Of The Bacteriophage T4 Tail Terminator Protein,
Gp15 (c- Terminal Truncation Mutant 1-261)
Length = 261
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 45 IDEVIDGGNLSCNIQGLVYYAMCHIASGWLY 75
IDE IDG NLS + + +++ +GW+Y
Sbjct: 172 IDEAIDGDNLS---RRRIEWSLTFEVNGWMY 199
>pdb|4HUD|A Chain A, Structure Of The Bacteriophage T4 Tail Terminator Protein,
Gp15.
pdb|4HUD|B Chain B, Structure Of The Bacteriophage T4 Tail Terminator Protein,
Gp15.
pdb|4HUD|C Chain C, Structure Of The Bacteriophage T4 Tail Terminator Protein,
Gp15.
pdb|4HUD|D Chain D, Structure Of The Bacteriophage T4 Tail Terminator Protein,
Gp15.
pdb|4HUD|E Chain E, Structure Of The Bacteriophage T4 Tail Terminator Protein,
Gp15.
pdb|4HUD|F Chain F, Structure Of The Bacteriophage T4 Tail Terminator Protein,
Gp15
Length = 272
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 45 IDEVIDGGNLSCNIQGLVYYAMCHIASGWLY 75
IDE IDG NLS + + +++ +GW+Y
Sbjct: 172 IDEAIDGDNLS---RRRIEWSLTFEVNGWMY 199
>pdb|3IU4|L Chain L, Anti Neugcgm3 Ganglioside Chimeric Antibody Chp3
Length = 213
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 62 VYYAMCHIASGWLYGGIYRSKLRRHYSLP 90
VYY H ++ W +GG + +L+R + P
Sbjct: 85 VYYCQQHYSTPWTFGGGTKLELKRTVAAP 113
>pdb|3DIF|A Chain A, Crystal Structure Of Fabox117
pdb|3DIF|C Chain C, Crystal Structure Of Fabox117
Length = 214
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 62 VYYAMCHIASGWLYGGIYRSKLRRHYSLPEAS 93
VYY H ++ W +GG + +++R + P S
Sbjct: 85 VYYCQQHYSTPWTFGGGTKLEIKRADAAPTVS 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.497
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,975,013
Number of Sequences: 62578
Number of extensions: 193204
Number of successful extensions: 462
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 10
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)