Query 041663
Match_columns 143
No_of_seqs 115 out of 741
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:00:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 86.6 0.32 1.1E-05 28.6 1.7 12 78-89 38-49 (49)
2 3rk3_E Complexin-1; snare prot 85.1 0.43 1.5E-05 29.3 1.8 14 78-91 41-54 (63)
3 1l4a_E Synaphin A; snare, snar 83.1 0.56 1.9E-05 30.0 1.8 14 78-91 45-58 (79)
4 3k6g_A Telomeric repeat-bindin 14.2 75 0.0026 21.4 1.5 13 78-90 75-87 (111)
5 2oez_A UPF0289 protein VP2528; 13.7 53 0.0018 25.4 0.7 17 81-97 120-137 (247)
6 4egd_A Uncharacterized protein 13.3 74 0.0025 24.6 1.4 14 79-92 193-206 (260)
7 1yfb_A Transition state regula 12.4 1.1E+02 0.0039 18.0 1.9 14 79-92 26-39 (59)
8 2l66_A SSO7C4, transcriptional 9.9 1.5E+02 0.0053 16.6 1.8 13 80-92 17-29 (53)
9 2ywm_A Glutaredoxin-like prote 8.2 2.4E+02 0.0082 19.7 2.7 38 77-114 5-45 (229)
10 4djc_B Sodium channel protein 8.1 1.7E+02 0.0059 15.4 1.4 21 2-22 15-35 (35)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=86.62 E-value=0.32 Score=28.57 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=10.9
Q ss_pred hHHHHHHHHhCC
Q 041663 78 IYRSKLRRHYSL 89 (143)
Q Consensus 78 ~~R~~iR~kygI 89 (143)
.+|+.||.||||
T Consensus 38 ~mRq~IRdKY~i 49 (49)
T 1kil_E 38 VMRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC
Confidence 579999999998
No 2
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=85.07 E-value=0.43 Score=29.29 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=12.0
Q ss_pred hHHHHHHHHhCCCC
Q 041663 78 IYRSKLRRHYSLPE 91 (143)
Q Consensus 78 ~~R~~iR~kygI~G 91 (143)
.+|+.||.||||+-
T Consensus 41 ~mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 41 AVRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhccch
Confidence 57999999999984
No 3
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=83.12 E-value=0.56 Score=30.04 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=12.0
Q ss_pred hHHHHHHHHhCCCC
Q 041663 78 IYRSKLRRHYSLPE 91 (143)
Q Consensus 78 ~~R~~iR~kygI~G 91 (143)
.+|+.||.||||+-
T Consensus 45 ~mRq~IRdKY~ikK 58 (79)
T 1l4a_E 45 EMRQTIRDKYGLKK 58 (79)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhcccc
Confidence 57999999999984
No 4
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=14.17 E-value=75 Score=21.45 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=11.5
Q ss_pred hHHHHHHHHhCCC
Q 041663 78 IYRSKLRRHYSLP 90 (143)
Q Consensus 78 ~~R~~iR~kygI~ 90 (143)
.+|.++|+|||-+
T Consensus 75 ~~R~qL~~KfG~e 87 (111)
T 3k6g_A 75 DTREALVKKFGAQ 87 (111)
T ss_dssp HHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhhH
Confidence 6899999999965
No 5
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=13.71 E-value=53 Score=25.36 Aligned_cols=17 Identities=41% Similarity=0.837 Sum_probs=9.5
Q ss_pred HHHHHHhCCCCCCc-ccc
Q 041663 81 SKLRRHYSLPEASC-SDS 97 (143)
Q Consensus 81 ~~iR~kygI~Gs~~-~Dc 97 (143)
..||.|++|+|..| -|.
T Consensus 120 ~~iRQR~~iPGG~C~FDL 137 (247)
T 2oez_A 120 SSIRQRFNLPGGSCCFDL 137 (247)
T ss_dssp HHHHHHHHC----CGGGC
T ss_pred HHHHhhhcCCCccCCcCc
Confidence 36999999998754 443
No 6
>4egd_A Uncharacterized protein saouhsc_02783; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Staphylococcus aureus subsp} PDB: 4eg9_A
Probab=13.26 E-value=74 Score=24.58 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=11.2
Q ss_pred HHHHHHHHhCCCCC
Q 041663 79 YRSKLRRHYSLPEA 92 (143)
Q Consensus 79 ~R~~iR~kygI~Gs 92 (143)
.-.++|+||+|+-+
T Consensus 193 NVKQLRkrY~IpT~ 206 (260)
T 4egd_A 193 NVQQLRKRYDIPTK 206 (260)
T ss_dssp HHHHHHHHSCCCCC
T ss_pred hHHHHHHhcCCCCC
Confidence 34689999999864
No 7
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=12.35 E-value=1.1e+02 Score=17.96 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=11.0
Q ss_pred HHHHHHHHhCCCCC
Q 041663 79 YRSKLRRHYSLPEA 92 (143)
Q Consensus 79 ~R~~iR~kygI~Gs 92 (143)
+=.++|+++||+..
T Consensus 26 IPkeiR~~Lgi~~G 39 (59)
T 1yfb_A 26 IPIELRRTLGIAEK 39 (59)
T ss_dssp CCHHHHHHTTCCTT
T ss_pred eCHHHHHHcCCCCC
Confidence 34689999999954
No 8
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=9.86 E-value=1.5e+02 Score=16.60 Aligned_cols=13 Identities=23% Similarity=0.606 Sum_probs=10.1
Q ss_pred HHHHHHHhCCCCC
Q 041663 80 RSKLRRHYSLPEA 92 (143)
Q Consensus 80 R~~iR~kygI~Gs 92 (143)
=.++|+++||+..
T Consensus 17 Pk~ir~~lgi~~G 29 (53)
T 2l66_A 17 PAKVRQKFQIKEG 29 (53)
T ss_dssp CHHHHHHSCCCTT
T ss_pred CHHHHHHcCcCCC
Confidence 3578999999854
No 9
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=8.23 E-value=2.4e+02 Score=19.74 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=25.3
Q ss_pred hhHHHHHHHHh--CCCCCCcccchhhh-cchhhhhhhHHHH
Q 041663 77 GIYRSKLRRHY--SLPEASCSDSLIHC-CCRACALTQEYTE 114 (143)
Q Consensus 77 ~~~R~~iR~ky--gI~Gs~~~Dc~~~~-~C~~Cal~Q~~rE 114 (143)
-..+.++++-+ .+++...-++.... ||++|.-++...+
T Consensus 5 ~~~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~ 45 (229)
T 2ywm_A 5 LDVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLK 45 (229)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHH
Confidence 45677888877 56666555555555 6888887766544
No 10
>4djc_B Sodium channel protein type 5 subunit alpha; EF-hand, calcium-binding protein; 1.35A {Homo sapiens}
Probab=8.12 E-value=1.7e+02 Score=15.37 Aligned_cols=21 Identities=14% Similarity=0.244 Sum_probs=14.7
Q ss_pred CCCCCcccCCCCCCCCCcCCc
Q 041663 2 HPKDPKLVNQLPEGQWSTGLY 22 (143)
Q Consensus 2 ~~~~~~~~~~~~~~~W~~gL~ 22 (143)
.+++|.-..+.+.+.|..-+|
T Consensus 15 ~~kkp~K~iprP~nk~q~~~f 35 (35)
T 4djc_B 15 GSKKPQKPIPRPLNKYQGFIF 35 (35)
T ss_pred cccCCCCCcCCCCCccceeeC
Confidence 567777777777787775443
Done!