Query 041663
Match_columns 143
No_of_seqs 115 out of 741
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 16:00:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041663.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041663hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mkya3 d.52.5.1 (A:359-439) P 20.2 30 0.0022 20.4 2.3 20 75-94 53-73 (81)
2 d1nexa1 a.157.1.1 (A:116-185) 13.0 46 0.0034 18.9 1.7 17 76-92 44-60 (70)
3 d2p7vb1 a.4.13.2 (B:546-613) S 11.7 57 0.0041 18.4 1.9 16 77-92 8-23 (68)
4 d1ku3a_ a.4.13.2 (A:) Sigma70 9.4 78 0.0057 17.3 1.9 17 76-92 10-26 (61)
5 d2odgc1 a.140.1.1 (C:2-47) Inn 8.7 91 0.0066 16.4 1.8 16 82-97 13-28 (46)
6 d1ttya_ a.4.13.2 (A:) Sigma70 8.7 83 0.006 18.5 1.9 17 76-92 20-36 (87)
7 d1z5ye1 c.47.1.10 (E:49-184) T 8.3 39 0.0029 20.6 0.1 14 93-107 23-36 (136)
8 d2csba2 a.60.2.4 (A:294-350) T 8.1 77 0.0056 16.9 1.3 11 82-92 7-17 (57)
9 d1mcvi_ g.3.2.1 (I:) Trypsin i 8.0 45 0.0033 15.5 0.3 11 95-105 13-23 (28)
10 d1tjla2 g.39.1.13 (A:111-151) 8.0 62 0.0045 16.4 0.9 15 104-118 23-37 (41)
No 1
>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.20 E-value=30 Score=20.39 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=15.8
Q ss_pred cchhHHHHHHHH-hCCCCCCc
Q 041663 75 YGGIYRSKLRRH-YSLPEASC 94 (143)
Q Consensus 75 ~~~~~R~~iR~k-ygI~Gs~~ 94 (143)
|.=.+..+||++ ||++|..+
T Consensus 53 Y~ryL~n~lR~~~f~~~G~Pi 73 (81)
T d1mkya3 53 QKIFLRKLIRDYVFPFEGSPI 73 (81)
T ss_dssp HHHHHHHHHHHHTCCCTTCCC
T ss_pred HHHHHHHHHHHHhCCCCccCE
Confidence 344677899998 99999865
No 2
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.99 E-value=46 Score=18.93 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=13.7
Q ss_pred chhHHHHHHHHhCCCCC
Q 041663 76 GGIYRSKLRRHYSLPEA 92 (143)
Q Consensus 76 ~~~~R~~iR~kygI~Gs 92 (143)
-+..-.+||+.|||+.+
T Consensus 44 kgkt~eeiR~~f~I~~D 60 (70)
T d1nexa1 44 RGRSPEEIRRTFNIVND 60 (70)
T ss_dssp TTCCHHHHHHHHTCCCC
T ss_pred ccCCHHHHHHHhCCCCC
Confidence 35667799999999964
No 3
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=11.73 E-value=57 Score=18.40 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=12.8
Q ss_pred hhHHHHHHHHhCCCCC
Q 041663 77 GIYRSKLRRHYSLPEA 92 (143)
Q Consensus 77 ~~~R~~iR~kygI~Gs 92 (143)
-..|.-|+.+|||.+.
T Consensus 8 ~rE~~Ii~~rfGl~~~ 23 (68)
T d2p7vb1 8 AREAKVLRMRFGIDMN 23 (68)
T ss_dssp HHHHHHHHHHTTTTSS
T ss_pred HHHHHHHHHHcCCCCC
Confidence 3567789999999865
No 4
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=9.40 E-value=78 Score=17.27 Aligned_cols=17 Identities=12% Similarity=-0.011 Sum_probs=13.3
Q ss_pred chhHHHHHHHHhCCCCC
Q 041663 76 GGIYRSKLRRHYSLPEA 92 (143)
Q Consensus 76 ~~~~R~~iR~kygI~Gs 92 (143)
.-..|.-|+.+|||.+.
T Consensus 10 ~~rer~Ii~~ryGl~~~ 26 (61)
T d1ku3a_ 10 SEREAMVLKMRKGLIDG 26 (61)
T ss_dssp CHHHHHHHHHHHTTTTS
T ss_pred CHHHHHHHHHHhCCCCC
Confidence 34678889999999865
No 5
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.69 E-value=91 Score=16.40 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=11.7
Q ss_pred HHHHHhCCCCCCcccc
Q 041663 82 KLRRHYSLPEASCSDS 97 (143)
Q Consensus 82 ~iR~kygI~Gs~~~Dc 97 (143)
++-++|||+-.++-|-
T Consensus 13 ~lL~~y~I~HGPvVds 28 (46)
T d2odgc1 13 TLLRRYNIPHGPVVGS 28 (46)
T ss_dssp HHHHHTTCCCCCCCHH
T ss_pred HHHHHhCCCCCCcccc
Confidence 4457899998877664
No 6
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=8.66 E-value=83 Score=18.53 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=13.7
Q ss_pred chhHHHHHHHHhCCCCC
Q 041663 76 GGIYRSKLRRHYSLPEA 92 (143)
Q Consensus 76 ~~~~R~~iR~kygI~Gs 92 (143)
.-..|.-|+.+|||.+.
T Consensus 20 ~~rE~~Ii~~rfGl~~~ 36 (87)
T d1ttya_ 20 SPREAMVLRMRYGLLDG 36 (87)
T ss_dssp CHHHHHHHHHHHTTTTS
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 45677889999999765
No 7
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}
Probab=8.29 E-value=39 Score=20.62 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=10.4
Q ss_pred Ccccchhhhcchhhh
Q 041663 93 SCSDSLIHCCCRACA 107 (143)
Q Consensus 93 ~~~Dc~~~~~C~~Ca 107 (143)
.+-||+++ ||++|.
T Consensus 23 vvl~Fwat-WC~pC~ 36 (136)
T d1z5ye1 23 VLLNVWAT-WCPTSR 36 (136)
T ss_dssp EEEEEECT-TCHHHH
T ss_pred EEEEEEcC-cCCCcC
Confidence 45777876 889994
No 8
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=8.07 E-value=77 Score=16.88 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=8.7
Q ss_pred HHHHHhCCCCC
Q 041663 82 KLRRHYSLPEA 92 (143)
Q Consensus 82 ~iR~kygI~Gs 92 (143)
++..||||+.+
T Consensus 7 klqdrygired 17 (57)
T d2csba2 7 KLQDRYGIRED 17 (57)
T ss_dssp HHHHHHCCCHH
T ss_pred ehhhhhccHHH
Confidence 67789999943
No 9
>d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=8.00 E-value=45 Score=15.50 Aligned_cols=11 Identities=45% Similarity=0.942 Sum_probs=8.2
Q ss_pred ccchhhhcchh
Q 041663 95 SDSLIHCCCRA 105 (143)
Q Consensus 95 ~Dc~~~~~C~~ 105 (143)
.||++.+-|.|
T Consensus 13 sdclagcvcgp 23 (28)
T d1mcvi_ 13 SDCLAGCVCGP 23 (28)
T ss_dssp GGSCTTCCBCT
T ss_pred ccccccceecC
Confidence 67888877765
No 10
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]}
Probab=7.97 E-value=62 Score=16.38 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=9.8
Q ss_pred hhhhhhhHHHHHHHh
Q 041663 104 RACALTQEYTELKIR 118 (143)
Q Consensus 104 ~~Cal~Q~~rEl~~~ 118 (143)
.-|+-+|+..|-+.+
T Consensus 23 ~~Cv~Cq~~~E~~~r 37 (41)
T d1tjla2 23 DLCIDCKTLAEIREK 37 (41)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 456677777776654
Done!