BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041664
         (268 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 73  LVNDDQPQCRICLDIGGED--LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRA 130
           +    Q  CRIC   G ++  LI PCHC G+  +VH++CL  W  + +      C  C+ 
Sbjct: 10  ITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRC---CELCKY 66

Query: 131 MFILRTN 137
            FI+ T 
Sbjct: 67  EFIMETK 73


>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 37.7 bits (86), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 75  NDDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHC 125
           ++D P C IC +  G +    C C G  + VHRSCL  W +     A   C
Sbjct: 3   DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQIC 53


>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
           Methyltransferase Smyd1
          Length = 490

 Score = 27.7 bits (60), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 49  TAVREDCVVSADDLQNLHVDETSYLVNDDQPQCRICLDI 87
           T + E C+VS DDLQN HV+   +   ++Q + R+ +D 
Sbjct: 119 TGLTEGCLVSVDDLQN-HVE---HFGEEEQKELRVDVDT 153


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.143    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,392,107
Number of Sequences: 62578
Number of extensions: 278080
Number of successful extensions: 810
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 803
Number of HSP's gapped (non-prelim): 11
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)