BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041664
(268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 17/150 (11%)
Query: 76 DDQPQCRICLDIGGED--LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133
+Q CRIC G ++ LI PCHC G+ +VH++CL W + + C C+ FI
Sbjct: 71 SNQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRC---CELCKYEFI 127
Query: 134 LRTNCPPDRWWLRLKFQFLVARDHTFIFVIVQLIVALLGVLVYKFY------GEELR--E 185
+ T P R W +L+ + A + I V V + +V+ Y EE++ +
Sbjct: 128 METKLKPLRKWEKLQ---MTASERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQ 184
Query: 186 IFGYEEHPYAFYIMAVLAIILVGVLYGFFI 215
+ G E P+ + + V+AI G L ++
Sbjct: 185 VTGILEWPF-WTKLVVVAIGFTGGLLFMYV 213
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 93/222 (41%), Gaps = 29/222 (13%)
Query: 4 VSNDSHNEDISESEPILPQPDILRRSEESSSSCSSSSSSSSSSEITAVREDCVVSADDLQ 63
+ N++ +IS Q L S+ SS+ S +SS T +
Sbjct: 15 IPNNTRTPEISGDLADASQTSTLNEKSPGRSASRSSNISKASSPTTGT------APRSQS 68
Query: 64 NLHVDETSYLVNDDQPQCRICLDIGGED--LIAPCHCRGTQKYVHRSCLDHWRSTKEGFA 121
L V ++ Q CRIC G E+ LI PC C GT ++VH+SCL W + +
Sbjct: 69 RLSVCPST------QDICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRC 122
Query: 122 FAHCTECRAMFILRTNCPPDRWWLRLKFQFLVARDHTFIFVIVQLIVALLGVLVYKFY-- 179
C C+ FI+ T P R W +L+ + + IF V V + +V+ Y
Sbjct: 123 ---CELCKYDFIMETKLKPLRKWEKLQ---MTTSERRKIFCSVTFHVIAITCVVWSLYVL 176
Query: 180 ----GEELREI--FGYEEHPYAFYIMAVLAIILVGVLYGFFI 215
EE+++ G E P+ + + V+AI G L ++
Sbjct: 177 IDRTAEEIKQGNDNGVLEWPF-WTKLVVVAIGFTGGLVFMYV 217
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 98/246 (39%), Gaps = 39/246 (15%)
Query: 42 SSSSSEITAVREDC------------VVSADDLQNLHVDETSYLVN---DDQPQCRICLD 86
+SS++ + EDC VSA D Q L + +D+P CRIC +
Sbjct: 17 TSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPMCRICHE 76
Query: 87 IGG-EDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRTNCPPDRWWL 145
EDL++PC C GT +HRSCL+HW S+ ++C C F + P WL
Sbjct: 77 GSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNT---SYCELCHFRFAVERKPRPLVEWL 133
Query: 146 R---LKFQFLVARDHTFIFVIVQLIVALLGVLVYKFYGEELREIFGYEEHPYAFYIMAVL 202
R + + F+ + + + G L + + L E +A+
Sbjct: 134 RNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRLEAVGLIALTVALF 193
Query: 203 AIILVGVLYGFFIAIICGQRIHERHYHVLAKQELTKEYVVEDREKNKDIPELDPSHVSEL 262
I L L F R H R Y+ + T + V+ K+ ++P PS
Sbjct: 194 TIYLFWTLVSF--------RYHCRLYN---EWRRTNQRVILLIPKSVNVPSNQPS----- 237
Query: 263 RMLGLY 268
+LGL+
Sbjct: 238 -LLGLH 242
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 81 CRICLDIGGED--LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRTNC 138
CRIC G E+ LI PC C GT ++VH+SCL W + + C C+ FI+ T
Sbjct: 80 CRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRC---CELCKYDFIMETKL 136
Query: 139 PPDRWWLRLKFQFLVARDHTFIFVIVQLIVALLGVLVYKFY------GEELREI--FGYE 190
P R W +L+ + + IF V V + +V+ Y EE+++ G
Sbjct: 137 KPLRKWEKLQ---MTTSERRKIFCSVTFHVIAVTCVVWSLYVLIDRTAEEIKQGNDNGVL 193
Query: 191 EHPYAFYIMAVLAIILVGVLYGFFI 215
E P+ + + V+AI G L ++
Sbjct: 194 EWPF-WTKLVVVAIGFTGGLVFMYV 217
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 22/185 (11%)
Query: 41 SSSSSSEITAVREDCVVSADDLQNLHVDETSYLVNDDQPQCRICLDIGGED--LIAPCHC 98
S S SS I+ VSA TS + Q CRIC G ++ LI PCHC
Sbjct: 18 SVSRSSNISKAGSPTSVSAPS----RFPRTS-VTPSSQDICRICHCEGDDESPLITPCHC 72
Query: 99 RGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRTNCPPDRWWLRLKFQFLVARDHT 158
G+ +VH++CL W + + C C+ FI+ T P R W +L+ + A +
Sbjct: 73 TGSLHFVHQACLQQWIKSSDTRC---CELCKFEFIMETKLKPLRKWEKLQ---MTASERR 126
Query: 159 FIFVIVQLIVALLGVLVYKFY------GEELR--EIFGYEEHPYAFYIMAVLAIILVGVL 210
I V V + +V+ Y EE+R + G E P+ + + V+AI G L
Sbjct: 127 KIMCSVTFHVIAITCVVWSLYVLIDRTAEEIRMGQNNGILEWPF-WTKLVVVAIGFTGGL 185
Query: 211 YGFFI 215
++
Sbjct: 186 LFMYV 190
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 42 SSSSSEITAVREDC------------VVSADDLQNLHVDETSYLVN---DDQPQCRICLD 86
+SS++ + EDC VSA D Q L + +D+P CRIC +
Sbjct: 17 TSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPMCRICHE 76
Query: 87 IGG-EDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRTNCPPDRWWL 145
EDL++PC C GT +HRSCL+HW S+ ++C C F + P WL
Sbjct: 77 GSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNT---SYCELCHFRFAVERKPRPLVEWL 133
Query: 146 R 146
R
Sbjct: 134 R 134
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 17/153 (11%)
Query: 73 LVNDDQPQCRICLDIGGED--LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRA 130
+ Q CRIC G ++ LI PCHC G+ +VH++CL W + + C C+
Sbjct: 72 ITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRC---CELCKY 128
Query: 131 MFILRTNCPPDRWWLRLKFQFLVARDHTFIFVIVQLIVALLGVLVYKFY------GEELR 184
FI+ T P R W +L+ + + + I V V + +V+ Y EE++
Sbjct: 129 EFIMETKLKPLRKWEKLQ---MTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIK 185
Query: 185 --EIFGYEEHPYAFYIMAVLAIILVGVLYGFFI 215
+ G E P+ + + V+AI G L ++
Sbjct: 186 QGQATGILEWPF-WTKLVVVAIGFTGGLLFMYV 217
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 42 SSSSSEITAVREDC------------VVSADDLQNLHVDETSYLVN---DDQPQCRICLD 86
+SS++ + EDC VSA D Q L + +D+P CRIC +
Sbjct: 17 TSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPMCRICHE 76
Query: 87 IGG-EDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRTNCPPDRWWL 145
EDL++PC C GT +HRSCL+HW S+ ++C C F + P WL
Sbjct: 77 GSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNT---SYCELCHFRFAVERKPRPLVEWL 133
Query: 146 R 146
R
Sbjct: 134 R 134
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 76 DDQPQCRICLDIGGED--LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133
Q CRIC G ++ LI PCHC G+ +VH++CL W + + C C+ FI
Sbjct: 48 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRC---CELCKFEFI 104
Query: 134 LRTNCPPDRWWLRLKFQFLVARDHTFIFVIVQLIVALLGVLVYKFY------GEELR--E 185
+ T P R W +L+ + A + I V V + +V+ Y EE++ +
Sbjct: 105 METKLKPLRKWEKLQ---MTASERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKMGQ 161
Query: 186 IFGYEEHPYAFYIMAVLAIILVGVLYGFFI 215
G E P+ + + V+AI G L ++
Sbjct: 162 NNGILEWPF-WTKLVVVAIGFTGGLLFMYV 190
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 19/121 (15%)
Query: 42 SSSSSEITAVREDC------------VVSADDLQNLHVDETSYLVN---DDQPQCRICLD 86
+ S++ + EDC VSA D Q L + +D+P CRIC +
Sbjct: 17 TGSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPMCRICHE 76
Query: 87 IGG-EDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRTNCPPDRWWL 145
EDL++PC C GT +HRSCL+HW S+ ++C C F + P WL
Sbjct: 77 GSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNT---SYCELCHFRFAVERKPRPLVEWL 133
Query: 146 R 146
R
Sbjct: 134 R 134
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 57 VSADDLQNLH--VDETSYLVNDDQPQCRICLDIGG-EDLIAPCHCRGTQKYVHRSCLDHW 113
VSA D Q L V + +D+P CRIC + EDL++PC C GT +HRSCL+HW
Sbjct: 43 VSAKDGQLLSTVVRTLTTQSFNDRPMCRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHW 102
Query: 114 RSTKEGFAFAHCTECRAMFILRTNCPPDRWWLR 146
S+ ++C C F + P WLR
Sbjct: 103 LSSSNT---SYCELCHFRFSVERKPRPLVEWLR 132
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 76 DDQPQCRICLDIGGED--LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133
+Q CRIC G ++ LI PC C G+ +VH++CL W + + C C+ FI
Sbjct: 73 SNQDICRICHCEGDDESPLITPCRCTGSLHFVHQTCLQQWIKSSDTRC---CELCKYEFI 129
Query: 134 LRTNCPPDRWWLRLKFQFLVAR----DHTFIFVIVQLIVALLGVLVYKFYGEELR--EIF 187
+ T P R W +L+ R TF + + +V L VL+ + EE+R +
Sbjct: 130 METKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDR-TAEEIRQGQAT 188
Query: 188 GYEEHPYAFYIMAVLAIILVGVLYGFFI 215
G E P+ + + V+AI G L ++
Sbjct: 189 GILEWPF-WTKLVVVAIGFTGGLLFMYV 215
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 57 VSADDLQNLHV---DETSYLVNDDQPQCRICLDIGG-EDLIAPCHCRGTQKYVHRSCLDH 112
VSA D Q L T+ +D P CRIC + EDL++PC C GT +HRSCL+H
Sbjct: 43 VSAKDGQLLSTVVRTLTTQSSFNDHPMCRICHEGSTQEDLLSPCECTGTLGTIHRSCLEH 102
Query: 113 WRSTKEGFAFAHCTECRAMFILRTNCPPDRWWLR 146
W S+ ++C C F + P WLR
Sbjct: 103 WLSSSNT---SYCELCHFRFSVERKPRPLVEWLR 133
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 57 VSADDLQNLHVDETSYLVNDDQPQCRICLDIG-GEDLIAPCHCRGTQKYVHRSCLDHWRS 115
V+A D Q L + D P CRIC + G GE L++PC C GT VH++CL+ W S
Sbjct: 40 VTAKDGQLLSTVIKALGTQSDGPICRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLS 99
Query: 116 TKEGFAFAHCTECRAMFILRTNCPPDRWWLR 146
+ ++C C F + P WL+
Sbjct: 100 SSNT---SYCELCHTEFAVERRPRPVTEWLK 127
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 57 VSADDLQNLHVDETSYLVNDDQPQCRICLDIG-GEDLIAPCHCRGTQKYVHRSCLDHWRS 115
V+A D Q L + D P CRIC + G GE L++PC C GT VH++CL+ W S
Sbjct: 40 VTAKDGQLLSTVIKALGTQSDGPICRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLS 99
Query: 116 TKEGFAFAHCTECRAMFILRTNCPPDRWWLR 146
+ ++C C F + P WL+
Sbjct: 100 SSN---TSYCELCHTEFAVERRPRPVTEWLK 127
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 10/185 (5%)
Query: 36 CSSSSSSSSSSEITAVRED---CVVSADDLQNLHVDETSYLVNDDQPQCRICLD-IGGED 91
CSSS + S E T + V++ D + L + D P CRIC + GE+
Sbjct: 16 CSSSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSDCPFCRICHEGANGEN 75
Query: 92 LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRTNCPPDRWWLRLKFQF 151
L++PC C GT VH+SCL+ W S+ ++C C F + P WL+
Sbjct: 76 LLSPCGCTGTLGAVHKSCLEKWLSSSN---TSYCELCHTEFAVEKRPRPLTEWLKDPGPR 132
Query: 152 LVARD---HTFIFVIVQLIVALLGVLVYKFYGEELREIFGYEEHPYAFYIMAVLAIILVG 208
R FV + + A+ G L + + LR E +A+ I ++
Sbjct: 133 TEKRTLCCDMVCFVFITPLAAISGWLCLRGAQDHLRLHSRLEAVGLIALTIALFTIYVLW 192
Query: 209 VLYGF 213
L F
Sbjct: 193 TLVSF 197
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 10/185 (5%)
Query: 36 CSSSSSSSSSSEITAVREDCVVSADDLQNLHVDETSYLVNDDQ---PQCRICLD-IGGED 91
CSSS + S E T + V+ ++ + T D Q P CRIC + GE+
Sbjct: 16 CSSSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDSQSDCPFCRICHEGANGEN 75
Query: 92 LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRTNCPPDRWWLRLKFQF 151
L++PC C GT VH+SCL+ W S+ ++C C F + P WL+
Sbjct: 76 LLSPCGCTGTLGAVHKSCLEKWLSSSN---TSYCELCHTEFAVEKRPRPLTEWLKDPGPR 132
Query: 152 LVARD---HTFIFVIVQLIVALLGVLVYKFYGEELREIFGYEEHPYAFYIMAVLAIILVG 208
R FV + + A+ G L + + LR E +A+ I ++
Sbjct: 133 TEKRTLCCDMVCFVFITPLAAISGWLCLRGAQDHLRLHSRLEAVGLIALTIALFTIYVLW 192
Query: 209 VLYGF 213
L F
Sbjct: 193 TLVSF 197
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 60 DDLQNLHVDET-SYLVNDDQPQ---CRICLDIGGED--LIAPCHCRGTQKYVHRSCLDHW 113
D+L + +ET + NDD P CRIC ED L PC CRG+ KY+H SCL W
Sbjct: 14 DELHKVANEETDTATFNDDAPSGATCRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEW 73
Query: 114 RSTKE 118
++K
Sbjct: 74 VASKN 78
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 57 VSADDLQNLHVDETSYLVNDDQPQCRICLD----IGGEDLIAPCHCRGTQKYVHRSCLDH 112
V+A D + L + D+P CRIC + E L++PC C GT VH+SCL+
Sbjct: 40 VTAKDGRLLSTVIKALGTQSDRPICRICHEGQDVCNSEGLLSPCDCTGTLGTVHKSCLEK 99
Query: 113 WRSTKEGFAFAHCTECRAMFILRTNCPPDRWWLR 146
W S+ ++C C F + P WLR
Sbjct: 100 WLSSSNT---SYCELCHTEFTIERRPRPLTEWLR 130
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 14/187 (7%)
Query: 36 CSSSSSSSSSSEITAVRED---CVVSADDLQNLHVDETSYLVNDDQPQCRICLD-IGGED 91
CS S + S E T + V++ D + L + D P CRIC + GE
Sbjct: 16 CSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSDGPFCRICHEGANGEC 75
Query: 92 LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRTNCPPDRWWL-----R 146
L++PC C GT VH+SCL+ W S+ ++C C F + P WL R
Sbjct: 76 LLSPCGCTGTLGAVHKSCLEKWLSSSN---TSYCELCHTEFAVEKRPRPLTEWLKDPGPR 132
Query: 147 LKFQFLVARDHTFIFVIVQLIVALLGVLVYKFYGEELREIFGYEEHPYAFYIMAVLAIIL 206
+ + L F+F+ + A+ G L + + LR E +A+ I +
Sbjct: 133 TEKRTLCCDMVCFLFITP--LAAISGWLCLRGAQDHLRLHSQLEAVGLIALTIALFTIYV 190
Query: 207 VGVLYGF 213
+ L F
Sbjct: 191 LWTLVSF 197
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
Query: 79 PQCRICLDIGGE--DLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRT 136
PQCRIC G E +L++PC C G+ + H+ CL W S + ++ C + + T
Sbjct: 108 PQCRICFQ-GPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAIST 166
Query: 137 NCPPDRWWLRLKFQFLVARDHTFIFVIVQLIVALLGVLVYKFYGEELREIFGYEEHPYAF 196
P L++Q + + VQ+ +LG L F + + P A
Sbjct: 167 KNP-------LQWQAI----SLTVIEKVQIAAIVLGSL---FLVASISWLIWSSLSPSAK 212
Query: 197 YIMAVLAIILVGVLYGFFIAIICGQRIHERH--YHVLAK-QELTKEYVVEDREKNKDI 251
+ L + +YGF + G IHE Y + + Q + +++ V + +K KDI
Sbjct: 213 WQRQDLLFQICYGMYGFMDVVCIGLIIHEGSSVYRIFKRWQAVNQQWKVLNYDKTKDI 270
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 76 DDQPQCRICLD-IGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134
D P CRIC + GE L++PC C GT VH+SCL+ W S+ ++C C F +
Sbjct: 59 SDGPFCRICHEGANGESLLSPCGCSGTLGAVHKSCLERWLSSSN---TSYCELCHTEFAV 115
Query: 135 RTNCPPDRWWLRLKFQFLVARD---HTFIFVIVQLIVALLGVLVYKFYGEELREIFGYEE 191
WL+ R F+ + + A+ G L + + LR
Sbjct: 116 EKRSRSLTEWLKDPGPRTEKRTLCCDVVCFLFITPLAAISGWLCLRGAQDHLR----LHS 171
Query: 192 HPYAFYIMAV-LAIILVGVLY 211
H A ++A+ +A+ + VL+
Sbjct: 172 HLEALGLIALTIALFTIYVLW 192
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
Query: 79 PQCRICLDIGGE--DLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRT 136
PQCRIC G E +L++PC C G+ + H+ CL W S + ++ C + + T
Sbjct: 108 PQCRICFQ-GPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAIST 166
Query: 137 NCPPDRWWLRLKFQFLVARDHTFIFVIVQLIVALLGVLVYKFYGEELREIFGYEEHPYAF 196
P L++Q + + VQ+ +LG L F + + P A
Sbjct: 167 KNP-------LQWQAI----SLTVIEKVQIAAIVLGSL---FLVASISWLIWSSLSPSAK 212
Query: 197 YIMAVLAIILVGVLYGFFIAIICGQRIHERH--YHVLAK-QELTKEYVVEDREKNKDI 251
+ L + +YGF + G +HE Y + + Q + +++ V + +K KD+
Sbjct: 213 WQRQDLLFQICYGMYGFMDVVCIGLIVHEGSSVYRIFKRWQAVNQQWKVLNYDKTKDV 270
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
Query: 79 PQCRICLDIGGE--DLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRT 136
P CRIC G E +L++PC C G+ K H+ CL W S + ++ C + + T
Sbjct: 160 PLCRICFQ-GPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAIST 218
Query: 137 NCPPDRWWLRLKFQFLVARDHTFIFVIVQLIVALLGVLVYKFYGEELREIFGYEEHPYAF 196
P L++Q + + VQ+ A+LG L F + + P A
Sbjct: 219 KNP-------LQWQAI----SLTVIEKVQIAAAILGSL---FLIASISWLIWSTFSPSAK 264
Query: 197 YIMAVLAIILVGVLYGFFIAIICGQRIHERH--YHVLAK-QELTKEYVVEDREKNKDI 251
+ L + +YGF + G IHE Y + + Q + +++ V + +K KD+
Sbjct: 265 WQRQDLLFQICYGMYGFMDVVCIGLIIHEGPSVYRIFKRWQAVNQQWKVLNYDKTKDL 322
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
Query: 79 PQCRICLDIGGE--DLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRT 136
P CRIC G E +L++PC C G+ K H+ CL W S + ++ C + + T
Sbjct: 161 PLCRICFQ-GPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAIST 219
Query: 137 NCPPDRWWLRLKFQFLVARDHTFIFVIVQLIVALLGVLVYKFYGEELREIFGYEEHPYAF 196
P L++Q + + VQ+ A+LG L F + + P A
Sbjct: 220 KNP-------LQWQAI----SLTVIEKVQVAAAILGSL---FLIASISWLIWSTFSPSAR 265
Query: 197 YIMAVLAIILVGVLYGFFIAIICGQRIHERH--YHVLAK-QELTKEYVVEDREKNKDI 251
+ L + +YGF + G IHE Y + + Q + +++ V + +K KD+
Sbjct: 266 WQRQDLLFQICYGMYGFMDVVCIGLIIHEGPSVYRIFKRWQAVNQQWKVLNYDKTKDL 323
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 74 VNDDQPQCRICLDIGGED--LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAM 131
+N D CR+C G D L PC C G+ +YVH+ CL W + HC C+A
Sbjct: 1 MNADDEICRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKK---THCELCKAK 57
Query: 132 F 132
F
Sbjct: 58 F 58
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 25/207 (12%)
Query: 54 DCVVSADDLQNLHVDETSYL--VNDD---QPQCRICLDIGGE--DLIAPCHCRGTQKYVH 106
DC S++D +DE L D P CRIC G E +L++PC C G+ + H
Sbjct: 111 DCCSSSEDCSKEKLDERLSLNSCTDSGVRTPLCRICFQ-GPEQGELLSPCRCSGSVRCTH 169
Query: 107 RSCLDHWRSTKEGFAFAHCTECRAMFILRTNCPPDRWWLRLKFQFLVARDHTFIFVIVQL 166
CL W S + ++ C + + T P L++Q + + VQ+
Sbjct: 170 EPCLIKWISERGSWSCELCYYKYQVIAISTKNP-------LQWQAI----SLTVIEKVQI 218
Query: 167 IVALLGVLVYKFYGEELREIFGYEEHPYAFYIMAVLAIILVGVLYGFFIAIICGQRIHER 226
A+LG L F + + P A + L + +YGF + +HE
Sbjct: 219 AAAVLGSL---FLIASISWLVWSSLSPSAKWQRQDLLFQICYAMYGFMDLVCIALIVHEG 275
Query: 227 H--YHVLAK-QELTKEYVVEDREKNKD 250
+ + + Q + +++ V + +K KD
Sbjct: 276 PSVFRIFNRWQAVNQQWKVLNYDKVKD 302
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 20/195 (10%)
Query: 78 QPQCRICLDIGGE--DLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135
QP C+IC G E +L+ PC C G+ +Y H+ CL W S + + C + ++
Sbjct: 163 QPICKICFQ-GAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVTAIK 221
Query: 136 TNCPPDRWWLRLKFQFLVARDHTFIFVIVQLIVALLGVLVYKFYGEELREIFGYEEHPYA 195
P W + + VQ+I +LG L F + + PYA
Sbjct: 222 MKQPCQ--WQSISITLVEK---------VQMIAVILGSL---FLIASVTWLLWSAFSPYA 267
Query: 196 FYIMAVLAIILVGVLYGFFIAIICGQRIHERH--YHVLAK-QELTKEYVVEDREKNKDIP 252
+ + + +YGF + G +HE Y V + + + + V + +K DI
Sbjct: 268 VWQRKDILFQICYGMYGFMDLVCIGLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDIE 327
Query: 253 ELDPSHVSELRMLGL 267
E S R L L
Sbjct: 328 ESSRGESSTSRTLWL 342
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 20/195 (10%)
Query: 78 QPQCRICLDIGGE--DLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135
QP C+IC G E +L+ PC C G+ +Y H+ CL W S + + C + ++
Sbjct: 165 QPICKICFQ-GAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVTAIK 223
Query: 136 TNCPPDRWWLRLKFQFLVARDHTFIFVIVQLIVALLGVLVYKFYGEELREIFGYEEHPYA 195
P W + + VQ+I +LG L F + + PYA
Sbjct: 224 MKQPCQ--WQSISITLVEK---------VQMIAVILGSL---FLIASVTWLLWSAFSPYA 269
Query: 196 FYIMAVLAIILVGVLYGFFIAIICGQRIHERH--YHVLAK-QELTKEYVVEDREKNKDIP 252
+ + + +YGF + G +HE Y V + + + + V + +K DI
Sbjct: 270 VWQRKDILFQICYGMYGFMDLVCIGLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDIE 329
Query: 253 ELDPSHVSELRMLGL 267
E S R L L
Sbjct: 330 ESSRGESSTSRTLWL 344
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 20/195 (10%)
Query: 78 QPQCRICLDIGGE--DLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135
QP C+IC G E +L+ PC C G+ +Y H+ CL W S + + C + ++
Sbjct: 167 QPICKICFQ-GAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIK 225
Query: 136 TNCPPDRWWLRLKFQFLVARDHTFIFVIVQLIVALLGVLVYKFYGEELREIFGYEEHPYA 195
P W + + VQ+I +LG L F + + PYA
Sbjct: 226 MKQPCQ--WQSISITLVEK---------VQMIAVILGSL---FLIASVTWLLWSAFSPYA 271
Query: 196 FYIMAVLAIILVGVLYGFFIAIICGQRIHERH--YHVLAK-QELTKEYVVEDREKNKDIP 252
+ + + +YGF + G +HE Y V + + + + V + +K DI
Sbjct: 272 VWQRKDILFQICYGMYGFMDLVCIGLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDIE 331
Query: 253 ELDPSHVSELRMLGL 267
E S R L L
Sbjct: 332 ESSRGESSTSRTLWL 346
>sp|Q6GM44|MARH5_XENLA E3 ubiquitin-protein ligase MARCH5 OS=Xenopus laevis GN=march5 PE=2
SV=1
Length = 283
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 81 CRICLDIGGEDLIA----PCHCRGTQKYVHRSCLDHWRSTKE---GFAFAHCTECRAMFI 133
C +C +D A PC CRG+ K+VH++CL W K+ A C +C A ++
Sbjct: 17 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYL 76
Query: 134 L 134
+
Sbjct: 77 I 77
>sp|Q3KNM2|MARH5_MOUSE E3 ubiquitin-protein ligase MARCH5 OS=Mus musculus GN=March5 PE=2
SV=1
Length = 278
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 81 CRICLDIGGEDLIA----PCHCRGTQKYVHRSCLDHWRSTKE---GFAFAHCTECRAMFI 133
C +C +D A PC CRG+ K+VH++CL W K+ A C +C A ++
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYL 73
Query: 134 L 134
+
Sbjct: 74 I 74
>sp|Q9NX47|MARH5_HUMAN E3 ubiquitin-protein ligase MARCH5 OS=Homo sapiens GN=MARCH5 PE=1
SV=1
Length = 278
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 81 CRICLDIGGEDLIA----PCHCRGTQKYVHRSCLDHWRSTKE---GFAFAHCTECRAMFI 133
C +C +D A PC CRG+ K+VH++CL W K+ A C +C A ++
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYL 73
Query: 134 L 134
+
Sbjct: 74 I 74
>sp|Q0X0A5|MARH5_CHLAE E3 ubiquitin-protein ligase MARCH5 OS=Chlorocebus aethiops
GN=MARCH5 PE=2 SV=1
Length = 278
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 81 CRICLDIGGEDLIA----PCHCRGTQKYVHRSCLDHWRSTKE---GFAFAHCTECRAMFI 133
C +C +D A PC CRG+ K+VH++CL W K+ A C +C A ++
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYL 73
Query: 134 L 134
+
Sbjct: 74 I 74
>sp|Q3ZC24|MARH5_BOVIN E3 ubiquitin-protein ligase MARCH5 OS=Bos taurus GN=MARCH5 PE=2
SV=1
Length = 278
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 81 CRICLDIGGEDLIA----PCHCRGTQKYVHRSCLDHWRSTKE---GFAFAHCTECRAMFI 133
C +C +D A PC CRG+ K+VH++CL W K+ A C +C A ++
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYL 73
Query: 134 L 134
+
Sbjct: 74 I 74
>sp|Q5ZJ41|MARH5_CHICK E3 ubiquitin-protein ligase MARCH5 OS=Gallus gallus GN=MARCH5 PE=2
SV=1
Length = 281
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 81 CRICLDIGGEDLIA----PCHCRGTQKYVHRSCLDHWRSTKE---GFAFAHCTECRAMFI 133
C +C +D A PC CRG+ K+VH++CL W K+ A C +C A ++
Sbjct: 17 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQTCLQRWVDEKQRGNSTARVACPQCNAEYL 76
Query: 134 L 134
+
Sbjct: 77 I 77
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 37 SSSSSSSSSSEITAVREDCVVSAD--DLQNLHVDETSYLVNDDQPQCRICLDIGGED--- 91
+ + S ++S T +E + AD L+ L ++ CRIC GG
Sbjct: 613 NDNGSRMAASGFTDEKETSKIKADPEKLKKLQESLLEEDSEEEGDLCRICQIAGGSPSNP 672
Query: 92 LIAPCHCRGTQKYVHRSCLDHWRSTK 117
L+ PC C G+ ++VH+ CL W K
Sbjct: 673 LLEPCGCVGSLQFVHQECLKKWLKVK 698
>sp|P27426|VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 OS=Bovine herpesvirus 4
(strain DN-599) GN=IE1 PE=3 SV=1
Length = 285
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 92/236 (38%), Gaps = 28/236 (11%)
Query: 6 NDSHNEDISESEPILPQPDILRRSEESSSSCSS----------SSSSSSSSEITAVREDC 55
N ++ D+SES + DI E++ S S S +S+ E
Sbjct: 47 NPCYDGDLSESNETIEMMDINSCREDTPSDAESETRFMPFVAHSKQPKHTSKNPTKGEIQ 106
Query: 56 VVSADDLQNLHVDETSYLVNDDQPQCRICLDIGGEDLIAP--CHCRGTQKYVHRSCLDHW 113
+ +++H E ++++ QC IC D GE L C+C G +Y H CL W
Sbjct: 107 YFPVEKCKDIHRVENQSSIDEEGKQCWICRD--GESLPEARYCNCYGDLQYCHEECLKTW 164
Query: 114 RSTKEGFAFAHCTECRAMFILRTNCPPDRWWLRLKFQFLVARDHTFIFV--IVQLIVALL 171
S C C+ + + L+ RD F+F+ + + L
Sbjct: 165 ISMS---GEKKCKFCQTPYKVNRQLS-----LKRGLPGYWDRDDRFVFIAGFIGMGTILA 216
Query: 172 GVLVYKFYGEELREIFG-YEEHPYAFYIMAVLAII-LVGVLYGFFIAIICGQRIHE 225
G + FY L + G Y + ++ LAII +VG+++ F+ G + +
Sbjct: 217 GWIASFFY--LLVVLCGKYFTYKDVMIVVGGLAIIQVVGLMFSLFMYFQIGNLLRQ 270
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 77 DQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRT 136
+ P C IC + G + I PC C G VH CL W + A C CR ++ RT
Sbjct: 11 EGPICWICREEVGNEGIHPCACTGELDVVHPQCLSTWLTVSRNTA---CQMCRVIYRTRT 67
Query: 137 NCPPDRWWLRLKFQFLVARDHTF-IFVIV 164
+W RL + R F +F+++
Sbjct: 68 -----QWRSRLNLWPEMERQEIFELFLLM 91
>sp|Q6NYK8|MARH5_DANRE E3 ubiquitin-protein ligase MARCH5 OS=Danio rerio GN=march5 PE=2
SV=1
Length = 289
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 76 DDQPQ--CRICLDIGGED----LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTEC 128
D+ P+ C +C ED ++PC C+G K++H+SCL W K+ C
Sbjct: 5 DEPPEKHCWVCFATEKEDRAAEWVSPCRCKGCTKWIHQSCLQRWLDEKQKGNSGGAVSC 63
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 81 CRICLDIGG---EDLIAPCHCRGTQKYVHRSCLDHW 113
CRIC GG L+ PC C G+ ++VH+ CL W
Sbjct: 641 CRICQIAGGSPANPLLEPCGCVGSLQFVHQECLKKW 676
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 81 CRICLDIGGED---LIAPCHCRGTQKYVHRSCLDHWRSTK--EGFAFAHCTEC 128
CRIC LI PC C G+ +YVH+ C+ W K G + T C
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTC 604
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 81 CRICLDIGGED---LIAPCHCRGTQKYVHRSCLDHWRSTK--EGFAFAHCTEC 128
CRIC LI PC C G+ +YVH+ C+ W K G + T C
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTC 604
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 81 CRICLDIGGED---LIAPCHCRGTQKYVHRSCLDHWRSTK--EGFAFAHCTEC 128
CRIC LI PC C G+ +YVH+ C+ W K G + T C
Sbjct: 553 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTC 605
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 81 CRICLDIGGED---LIAPCHCRGTQKYVHRSCLDHWRSTK--EGFAFAHCTEC 128
CRIC LI PC C G+ +YVH+ C+ W K G + T C
Sbjct: 554 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTC 606
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 81 CRICLDIGGED--LIAPCHCRGTQKYVHRSCLDHW--RSTKEGFAFAHCTECRAMFILRT 136
CR+C G + L PC C G+ K++H+ CL W S KE +C C+ F
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKE-----YCELCKHRFAFTP 63
Query: 137 NCPPD 141
PD
Sbjct: 64 IYSPD 68
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 81 CRICLDIGGED--LIAPCHCRGTQKYVHRSCLDHW--RSTKEGFAFAHCTECRAMFILRT 136
CR+C G + L PC C G+ K++H+ CL W S KE +C C+ F
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKE-----YCELCKHRFAFTP 63
Query: 137 NCPPD 141
PD
Sbjct: 64 IYSPD 68
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 81 CRICLDIGGED--LIAPCHCRGTQKYVHRSCLDHW--RSTKEGFAFAHCTECRAMFILRT 136
CR+C G + L PC C G+ K++H+ CL W S KE +C C+ F
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKE-----YCELCKHRFAFTP 63
Query: 137 NCPPD 141
PD
Sbjct: 64 IYSPD 68
>sp|Q9Q8T2|LAP_RFVKA E3 ubiquitin-protein ligase LAP OS=Rabbit fibroma virus (strain
Kasza) GN=s153R PE=3 SV=1
Length = 201
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Query: 96 CHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRTNCPPDRWWLRLKFQFLVAR 155
C CRG K VH+ CL+ W +T + C C + ++ + + +L R
Sbjct: 31 CKCRGDNKIVHKECLEEWINT-DTVKNKSCAICETPYNVK------QQYKKLTKWRCYRR 83
Query: 156 D-HTFIFVIVQLIVALLGVLVYKFYGEELREIFGYEEH---PYAFYIMAVLAIILVGVLY 211
D H + V + L + + G+ Y E+ ++ EE F + + L +V VL
Sbjct: 84 DCHDSLLVNLPLCLIVGGISTYTLVSVEIIKLMESEETSELTKVFLVTSFLGPFIVTVLS 143
Query: 212 GFFIAIIC 219
I C
Sbjct: 144 ALRTCIDC 151
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 75 NDDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134
++D P C IC + G + C C G + VHRSCL W + A C C ++
Sbjct: 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTA---CQICGVVYNT 59
Query: 135 R 135
R
Sbjct: 60 R 60
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,442,553
Number of Sequences: 539616
Number of extensions: 3933570
Number of successful extensions: 34097
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 31461
Number of HSP's gapped (non-prelim): 1612
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)