Query 041664
Match_columns 268
No_of_seqs 234 out of 787
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 16:01:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 2.4E-19 8.2E-24 129.2 2.9 57 76-135 4-60 (60)
2 2d8s_A Cellular modulator of i 99.7 3.2E-17 1.1E-21 124.4 4.3 66 74-142 11-78 (80)
3 1v87_A Deltex protein 2; ring- 97.8 1.3E-05 4.4E-10 62.5 3.0 59 77-140 24-100 (114)
4 2kiz_A E3 ubiquitin-protein li 97.7 2.7E-05 9.4E-10 55.3 3.4 50 75-134 11-63 (69)
5 1iym_A EL5; ring-H2 finger, ub 97.6 1.3E-05 4.6E-10 54.3 0.9 48 77-133 4-54 (55)
6 2ecl_A Ring-box protein 2; RNF 97.6 2.5E-05 8.4E-10 58.1 2.4 29 102-135 49-77 (81)
7 2ep4_A Ring finger protein 24; 97.6 4.9E-05 1.7E-09 54.7 3.8 48 76-133 13-63 (74)
8 1x4j_A Ring finger protein 38; 97.5 3E-05 1E-09 56.2 2.3 48 76-133 21-71 (75)
9 2ecm_A Ring finger and CHY zin 97.5 3.1E-05 1.1E-09 52.4 2.1 47 76-132 3-53 (55)
10 2ea6_A Ring finger protein 4; 97.4 3.1E-05 1.1E-09 54.4 1.2 49 75-133 12-67 (69)
11 2d8t_A Dactylidin, ring finger 97.4 3E-05 1E-09 55.6 1.0 50 76-135 13-62 (71)
12 2l0b_A E3 ubiquitin-protein li 97.4 6.2E-05 2.1E-09 56.9 2.4 48 76-133 38-88 (91)
13 3dpl_R Ring-box protein 1; ubi 97.4 9.7E-05 3.3E-09 58.2 3.2 30 102-136 74-103 (106)
14 3ng2_A RNF4, snurf, ring finge 97.4 3.6E-05 1.2E-09 54.6 0.6 51 74-134 6-63 (71)
15 1chc_A Equine herpes virus-1 r 97.3 0.0001 3.6E-09 51.9 3.0 49 76-134 3-52 (68)
16 2ct2_A Tripartite motif protei 97.3 0.00014 4.7E-09 53.6 3.6 53 76-135 13-69 (88)
17 2yur_A Retinoblastoma-binding 97.3 0.00011 3.9E-09 53.2 2.9 49 77-133 14-63 (74)
18 2ysl_A Tripartite motif-contai 97.2 0.0001 3.5E-09 52.6 2.0 52 76-134 18-69 (73)
19 2csy_A Zinc finger protein 183 97.2 0.00023 7.9E-09 52.1 3.9 47 77-133 14-60 (81)
20 2ect_A Ring finger protein 126 97.2 0.00013 4.6E-09 52.8 2.3 51 76-136 13-66 (78)
21 2xeu_A Ring finger protein 4; 97.2 6.4E-05 2.2E-09 52.0 0.5 48 77-134 2-56 (64)
22 4a0k_B E3 ubiquitin-protein li 97.2 7.2E-05 2.5E-09 60.2 0.6 29 102-135 85-113 (117)
23 2ecy_A TNF receptor-associated 97.2 0.00015 5.2E-09 51.1 2.1 50 76-134 13-62 (66)
24 2djb_A Polycomb group ring fin 97.1 0.00021 7.2E-09 51.3 2.8 49 77-135 14-63 (72)
25 2ct0_A Non-SMC element 1 homol 97.1 0.00026 8.8E-09 52.6 3.2 54 75-135 12-65 (74)
26 2ecw_A Tripartite motif-contai 97.1 0.00041 1.4E-08 50.3 3.8 53 77-134 18-71 (85)
27 2ysj_A Tripartite motif-contai 97.0 0.00048 1.7E-08 47.9 3.6 46 76-128 18-63 (63)
28 2ecn_A Ring finger protein 141 97.0 0.00011 3.6E-09 52.3 -0.2 48 76-134 13-60 (70)
29 2ecv_A Tripartite motif-contai 96.9 0.00061 2.1E-08 49.4 3.7 55 76-135 17-72 (85)
30 2ecj_A Tripartite motif-contai 96.9 0.00063 2.2E-08 46.1 3.5 46 76-128 13-58 (58)
31 4ayc_A E3 ubiquitin-protein li 96.7 0.00033 1.1E-08 56.7 1.0 47 78-134 53-99 (138)
32 1t1h_A Gspef-atpub14, armadill 96.7 0.00049 1.7E-08 49.8 1.7 50 76-134 6-55 (78)
33 3ztg_A E3 ubiquitin-protein li 96.7 0.00076 2.6E-08 50.3 2.8 50 76-133 11-61 (92)
34 1jm7_A BRCA1, breast cancer ty 96.7 0.00079 2.7E-08 51.7 2.8 50 78-134 21-70 (112)
35 3lrq_A E3 ubiquitin-protein li 96.7 0.00057 1.9E-08 52.4 2.0 49 77-134 21-70 (100)
36 3fl2_A E3 ubiquitin-protein li 96.6 0.00062 2.1E-08 53.8 1.8 49 77-134 51-99 (124)
37 1g25_A CDK-activating kinase a 96.6 0.00047 1.6E-08 48.3 0.6 49 77-134 2-55 (65)
38 1e4u_A Transcriptional repress 96.5 0.0013 4.6E-08 48.7 3.0 53 76-135 9-63 (78)
39 2y43_A E3 ubiquitin-protein li 96.4 0.00092 3.2E-08 50.7 1.5 48 77-134 21-69 (99)
40 2egp_A Tripartite motif-contai 96.4 0.00032 1.1E-08 50.6 -1.1 54 76-134 10-65 (79)
41 2ckl_B Ubiquitin ligase protei 96.4 0.0012 4E-08 54.7 1.9 48 77-133 53-101 (165)
42 1z6u_A NP95-like ring finger p 96.3 0.0013 4.6E-08 54.2 1.9 50 77-135 77-126 (150)
43 1rmd_A RAG1; V(D)J recombinati 96.3 0.0015 5.1E-08 50.9 2.0 50 77-135 22-71 (116)
44 4ap4_A E3 ubiquitin ligase RNF 96.1 0.0009 3.1E-08 52.3 0.1 49 76-134 5-60 (133)
45 2ckl_A Polycomb group ring fin 96.1 0.0014 4.9E-08 50.4 1.1 48 77-134 14-62 (108)
46 3hct_A TNF receptor-associated 96.0 0.0027 9.3E-08 49.8 2.2 50 76-134 16-65 (118)
47 2y1n_A E3 ubiquitin-protein li 95.9 0.0037 1.3E-07 59.7 3.2 50 78-136 332-381 (389)
48 3l11_A E3 ubiquitin-protein li 95.7 0.00056 1.9E-08 53.3 -2.9 49 77-134 14-62 (115)
49 4ap4_A E3 ubiquitin ligase RNF 95.4 0.0032 1.1E-07 49.1 0.6 51 74-134 68-125 (133)
50 2vje_A E3 ubiquitin-protein li 95.3 0.0058 2E-07 43.2 1.7 51 74-134 4-57 (64)
51 3k1l_B Fancl; UBC, ring, RWD, 95.0 0.012 4.2E-07 55.6 3.1 56 76-134 306-373 (381)
52 2kr4_A Ubiquitin conjugation f 94.7 0.021 7.2E-07 42.5 3.3 49 76-134 12-60 (85)
53 2vje_B MDM4 protein; proto-onc 94.4 0.014 4.8E-07 41.0 1.5 48 77-134 6-56 (63)
54 2c2l_A CHIP, carboxy terminus 94.3 0.023 7.8E-07 49.6 3.0 51 75-134 205-255 (281)
55 4ic3_A E3 ubiquitin-protein li 94.2 0.0061 2.1E-07 44.1 -0.7 45 77-135 23-68 (74)
56 1jm7_B BARD1, BRCA1-associated 94.2 0.0072 2.5E-07 47.2 -0.4 46 77-134 21-67 (117)
57 1wgm_A Ubiquitin conjugation f 94.1 0.03 1E-06 42.9 3.0 50 76-134 20-69 (98)
58 2kre_A Ubiquitin conjugation f 93.1 0.045 1.5E-06 42.1 2.5 49 76-134 27-75 (100)
59 3knv_A TNF receptor-associated 93.1 0.011 3.7E-07 48.3 -1.1 50 76-134 29-78 (141)
60 3nw0_A Non-structural maintena 93.0 0.038 1.3E-06 49.1 2.1 52 76-135 178-230 (238)
61 2ea5_A Cell growth regulator w 92.8 0.1 3.5E-06 37.2 3.8 48 76-137 13-61 (68)
62 3hcs_A TNF receptor-associated 92.8 0.043 1.5E-06 45.3 2.0 50 76-134 16-65 (170)
63 1bor_A Transcription factor PM 91.9 0.029 1E-06 38.2 -0.0 47 76-135 4-50 (56)
64 2yu4_A E3 SUMO-protein ligase 91.9 0.11 3.6E-06 39.2 3.1 52 75-131 4-59 (94)
65 2ecg_A Baculoviral IAP repeat- 91.2 0.086 3E-06 37.8 1.9 43 78-134 25-68 (75)
66 2f42_A STIP1 homology and U-bo 90.2 0.095 3.3E-06 44.8 1.6 50 76-134 104-153 (179)
67 3t6p_A Baculoviral IAP repeat- 88.4 0.095 3.2E-06 49.0 0.2 46 77-136 294-340 (345)
68 1wim_A KIAA0161 protein; ring 86.8 0.38 1.3E-05 35.7 2.8 53 77-134 4-64 (94)
69 1weo_A Cellulose synthase, cat 84.3 1.1 3.7E-05 34.5 4.1 51 76-133 14-69 (93)
70 2yho_A E3 ubiquitin-protein li 83.1 0.24 8.3E-06 36.2 0.1 46 78-137 18-64 (79)
71 1weu_A Inhibitor of growth fam 80.1 1.8 6.2E-05 33.0 4.1 51 75-131 33-85 (91)
72 3htk_C E3 SUMO-protein ligase 75.9 1.2 4.2E-05 40.3 2.3 51 76-134 179-232 (267)
73 1wen_A Inhibitor of growth fam 72.0 1.8 6.2E-05 31.2 2.0 51 75-131 13-65 (71)
74 2bay_A PRE-mRNA splicing facto 71.9 1.5 5E-05 30.5 1.4 46 79-134 4-50 (61)
75 2lri_C Autoimmune regulator; Z 68.9 1.4 4.9E-05 31.4 0.8 51 75-131 9-59 (66)
76 1kf6_C Fumarate reductase 15 k 56.0 32 0.0011 27.9 6.7 54 140-194 12-67 (130)
77 2vnf_A ING 4, P29ING4, inhibit 53.8 1.5 5.3E-05 30.5 -1.3 49 76-130 8-58 (60)
78 3c6w_A P28ING5, inhibitor of g 52.2 1.7 5.8E-05 30.3 -1.3 49 76-130 7-57 (59)
79 2g6q_A Inhibitor of growth pro 44.1 2.7 9.2E-05 29.5 -1.3 49 76-130 9-59 (62)
80 2jmi_A Protein YNG1, ING1 homo 42.5 4.9 0.00017 30.5 -0.1 49 76-130 24-75 (90)
81 2ysm_A Myeloid/lymphoid or mix 38.7 5.2 0.00018 30.6 -0.6 38 74-114 3-41 (111)
82 2ekk_A UBA domain from E3 ubiq 38.2 19 0.00064 23.4 2.2 21 247-267 1-21 (47)
83 1wep_A PHF8; structural genomi 35.9 17 0.00057 26.2 1.9 54 76-133 10-65 (79)
84 3o36_A Transcription intermedi 32.5 5.5 0.00019 33.1 -1.5 49 77-131 3-51 (184)
85 2l5u_A Chromodomain-helicase-D 32.2 9 0.00031 26.5 -0.1 51 75-131 8-58 (61)
86 2yt5_A Metal-response element- 28.5 17 0.00059 25.0 0.8 54 75-131 3-61 (66)
87 1f62_A Transcription factor WS 28.0 18 0.00062 23.6 0.8 47 80-130 2-49 (51)
88 2ko5_A Ring finger protein Z; 27.5 46 0.0016 25.7 3.1 48 78-136 28-75 (99)
89 3u5n_A E3 ubiquitin-protein li 27.5 5.7 0.0002 33.8 -2.2 51 77-133 6-56 (207)
90 2lv9_A Histone-lysine N-methyl 26.1 20 0.0007 27.0 0.9 48 77-130 27-75 (98)
91 2l43_A N-teminal domain from h 25.8 37 0.0013 25.1 2.3 51 75-131 22-75 (88)
92 1we9_A PHD finger family prote 25.4 7.5 0.00026 26.8 -1.6 53 75-130 3-57 (64)
93 2ku3_A Bromodomain-containing 25.2 33 0.0011 24.5 1.9 50 75-130 13-65 (71)
94 2jny_A Uncharacterized BCR; st 25.1 24 0.00083 25.2 1.1 36 91-139 10-45 (67)
95 2ri7_A Nucleosome-remodeling f 23.9 11 0.00037 30.8 -1.1 53 76-132 6-60 (174)
96 2kvh_A Zinc finger and BTB dom 23.7 28 0.00096 18.0 1.0 13 122-134 3-15 (27)
97 3o70_A PHD finger protein 13; 23.6 14 0.00048 26.2 -0.4 51 74-130 15-66 (68)
98 3ql9_A Transcriptional regulat 23.5 41 0.0014 27.0 2.3 50 75-129 54-109 (129)
99 4ev6_A Magnesium transport pro 23.3 1.5E+02 0.0051 26.5 6.4 20 190-209 309-328 (339)
100 4aw6_A CAAX prenyl protease 1 23.3 3.2E+02 0.011 26.3 9.0 15 183-197 149-163 (482)
101 2xb1_A Pygopus homolog 2, B-ce 22.7 21 0.00071 27.4 0.3 51 78-133 3-63 (105)
102 3v43_A Histone acetyltransfera 22.6 46 0.0016 25.4 2.4 32 77-111 4-42 (112)
103 2kvf_A Zinc finger and BTB dom 21.9 31 0.0011 17.8 1.0 13 122-134 3-15 (28)
104 1p1p_A AA-conotoxin PIVA; neur 21.5 47 0.0016 19.3 1.6 16 90-105 8-23 (26)
105 1ard_A Yeast transcription fac 21.2 32 0.0011 17.8 0.9 12 123-134 3-14 (29)
106 2lvu_A Zinc finger and BTB dom 26.6 20 0.00069 18.4 0.0 13 123-135 3-15 (26)
107 2vpb_A Hpygo1, pygopus homolog 21.0 26 0.00089 24.6 0.6 34 75-111 5-41 (65)
108 1rik_A E6APC1 peptide; E6-bind 20.8 35 0.0012 17.7 1.0 12 123-134 3-14 (29)
109 2kvg_A Zinc finger and BTB dom 20.6 31 0.0011 18.0 0.7 13 122-134 3-15 (27)
110 4gne_A Histone-lysine N-methyl 20.3 26 0.00088 27.2 0.5 34 75-111 12-45 (107)
111 2m0f_A Zinc finger and BTB dom 20.1 36 0.0012 17.5 0.9 12 123-134 3-14 (29)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.75 E-value=2.4e-19 Score=129.24 Aligned_cols=57 Identities=33% Similarity=0.781 Sum_probs=51.7
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~ 135 (268)
.+++.||||+++++++++.||+|+|+++|||++||++|++.++ ...||+|+++|+++
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~---~~~C~~C~~~~~~r 60 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR---NTACQICGVVYNTR 60 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT---CSBCTTTCCBCCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC---CCccCCCCCeeecC
Confidence 4678999999987778999999999999999999999999886 37999999999873
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-17 Score=124.38 Aligned_cols=66 Identities=35% Similarity=0.812 Sum_probs=57.2
Q ss_pred CCCCCCceEEeccCC--CCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeeeeecCCCc
Q 041664 74 VNDDQPQCRICLDIG--GEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRTNCPPDR 142 (268)
Q Consensus 74 ~~~~~~~CRIC~~~~--~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~~~~~p~~ 142 (268)
.+.++..||||+++. +++++.||+|+|+++++|+.||++|+..++ ...||+|+++|.++.+.+|..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~---~~~CplCr~~~~~~~~~~P~~ 78 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD---TRCCELCKYEFIMETKLSGPS 78 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC---CSBCSSSCCBCCCCCCSCCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC---CCCCCCCCCeeecCcccCCCC
Confidence 345678999999863 457899999999999999999999999876 379999999999998888763
No 3
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.75 E-value=1.3e-05 Score=62.49 Aligned_cols=59 Identities=19% Similarity=0.451 Sum_probs=41.0
Q ss_pred CCCceEEeccCCCCc---------------c---ccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeeeeec
Q 041664 77 DQPQCRICLDIGGED---------------L---IAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRTNC 138 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~---------------l---i~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~~~~ 138 (268)
.+..|-||++.-.++ . +.|| .+.+|..||.+|+..........|++|+..|......
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-----~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~ 98 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKC-----SHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGT 98 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSS-----CCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCC-----CCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCC
Confidence 346899999862111 1 4666 4799999999999753322247999999999876544
Q ss_pred CC
Q 041664 139 PP 140 (268)
Q Consensus 139 ~p 140 (268)
.|
T Consensus 99 qp 100 (114)
T 1v87_A 99 QP 100 (114)
T ss_dssp CT
T ss_pred CC
Confidence 34
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.66 E-value=2.7e-05 Score=55.26 Aligned_cols=50 Identities=32% Similarity=0.743 Sum_probs=38.2
Q ss_pred CCCCCceEEeccCC---CCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 75 NDDQPQCRICLDIG---GEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 75 ~~~~~~CRIC~~~~---~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
..+...|.||++.- ....+.|| .+.+|..|+.+|+..+. .|++|+.++..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C-----~H~fc~~Ci~~~~~~~~-----~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPC-----MHLFHQVCVDQWLITNK-----KCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTT-----SCEEEHHHHHHHHHHCS-----BCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCC-----CCHHHHHHHHHHHHcCC-----CCcCcCccccC
Confidence 34577899998762 23356776 36899999999998754 69999998865
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.60 E-value=1.3e-05 Score=54.34 Aligned_cols=48 Identities=29% Similarity=0.731 Sum_probs=35.6
Q ss_pred CCCceEEeccCCC--C-ccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceee
Q 041664 77 DQPQCRICLDIGG--E-DLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133 (268)
Q Consensus 77 ~~~~CRIC~~~~~--~-~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~ 133 (268)
++..|-||++.-. + ....| .| .+.+|..|+.+|++.+ ..|++|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~-~C---~H~f~~~Ci~~w~~~~-----~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLP-RC---GHGFHAECVDMWLGSH-----STCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECS-SS---CCEECTTHHHHTTTTC-----CSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECC-CC---CCcccHHHHHHHHHcC-----CcCcCCCCEeE
Confidence 5678999998732 2 34455 23 4789999999999764 48999998875
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=2.5e-05 Score=58.06 Aligned_cols=29 Identities=17% Similarity=0.713 Sum_probs=25.3
Q ss_pred CcccchhHHHHHHHhcCCCcccccccCCceeeee
Q 041664 102 QKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135 (268)
Q Consensus 102 ~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~ 135 (268)
.+.+|..|+.+|+..+. .||+|+.++.++
T Consensus 49 ~H~FH~~Ci~~Wl~~~~-----~CP~CR~~~~~~ 77 (81)
T 2ecl_A 49 NHSFHNCCMSLWVKQNN-----RCPLCQQDWVVQ 77 (81)
T ss_dssp SCEEEHHHHHHHTTTCC-----BCTTTCCBCCEE
T ss_pred CCccChHHHHHHHHhCC-----CCCCcCCCcchh
Confidence 48999999999998753 899999998765
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=4.9e-05 Score=54.65 Aligned_cols=48 Identities=27% Similarity=0.652 Sum_probs=36.4
Q ss_pred CCCCceEEeccCCCCc---cccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceee
Q 041664 76 DDQPQCRICLDIGGED---LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~---li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~ 133 (268)
.+...|.||++.-.++ .+.|| .+.+|..|+.+|++.+ ..|++|+.++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C-----~H~f~~~Ci~~~~~~~-----~~CP~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPC-----KHAFHRKCLIKWLEVR-----KVCPLCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETT-----TEEEEHHHHHHHHHHC-----SBCTTTCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCC-----CCEecHHHHHHHHHcC-----CcCCCcCcccc
Confidence 3467899999874322 23476 4789999999999875 38999999875
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.55 E-value=3e-05 Score=56.17 Aligned_cols=48 Identities=27% Similarity=0.626 Sum_probs=37.0
Q ss_pred CCCCceEEeccCCCCc---cccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceee
Q 041664 76 DDQPQCRICLDIGGED---LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~---li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~ 133 (268)
.+...|.||++.-.++ ...||. +.+|..|+.+|++.+ ..|++|+.++.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~-----~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN-----RTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC-----SSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC-----CcCcCcCCcCC
Confidence 4567899999863322 456763 789999999999875 48999998874
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.54 E-value=3.1e-05 Score=52.36 Aligned_cols=47 Identities=23% Similarity=0.553 Sum_probs=36.8
Q ss_pred CCCCceEEeccCCC----CccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCcee
Q 041664 76 DDQPQCRICLDIGG----EDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMF 132 (268)
Q Consensus 76 ~~~~~CRIC~~~~~----~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y 132 (268)
.+...|.||++.-. ...+.|| .+.+|..|+.+|++.+ ..|++|+.++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C-----gH~fc~~Ci~~~~~~~-----~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPC-----GHLLHRTCYEEMLKEG-----YRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTT-----SCEEETTHHHHHHHHT-----CCCTTSCCSS
T ss_pred CCCCcCcccChhhcCCCcCeEecCC-----CCcccHHHHHHHHHcC-----CcCCCCCCcC
Confidence 35678999998632 2456787 4789999999999876 4899999875
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=3.1e-05 Score=54.45 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=37.4
Q ss_pred CCCCCceEEeccCCCCc-------cccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceee
Q 041664 75 NDDQPQCRICLDIGGED-------LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133 (268)
Q Consensus 75 ~~~~~~CRIC~~~~~~~-------li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~ 133 (268)
..+...|-||++.-.++ .+.|| .+.+|..|+.+|+..+ ..|++|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~C-----gH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTEC-----GHVFCSQCLRDSLKNA-----NTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSS-----SCEEEHHHHHHHHHHC-----SSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCC-----CChhcHHHHHHHHHcC-----CCCCCCCCccC
Confidence 34578899999862221 45677 4789999999999874 48999998874
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=3e-05 Score=55.62 Aligned_cols=50 Identities=22% Similarity=0.430 Sum_probs=40.7
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~ 135 (268)
.+...|.||++.-.++...|| .+.+|..|+.+|+..+ ..|++|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~C-----gH~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPC-----KHVFCYLCVKGASWLG-----KRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETT-----TEEEEHHHHHHCTTCS-----SBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCCEEccC-----CCHHHHHHHHHHHHCC-----CcCcCcCchhCHh
Confidence 456789999987677777786 3789999999999754 5899999998754
No 12
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.39 E-value=6.2e-05 Score=56.86 Aligned_cols=48 Identities=33% Similarity=0.848 Sum_probs=36.8
Q ss_pred CCCCceEEeccCC--CC-ccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceee
Q 041664 76 DDQPQCRICLDIG--GE-DLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133 (268)
Q Consensus 76 ~~~~~CRIC~~~~--~~-~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~ 133 (268)
.++..|-||++.- ++ ....||. +.+|..|+.+|+..+ ..|++|+.++.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~-----~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS-----GTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT-----CBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC-----CcCcCcCccCC
Confidence 4578899999763 22 3457763 789999999999754 48999998874
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.36 E-value=9.7e-05 Score=58.18 Aligned_cols=30 Identities=17% Similarity=0.447 Sum_probs=25.8
Q ss_pred CcccchhHHHHHHHhcCCCcccccccCCceeeeee
Q 041664 102 QKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRT 136 (268)
Q Consensus 102 ~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~~ 136 (268)
.+..|..|+.+|+..+ ..||+|+.+|.+..
T Consensus 74 ~H~FH~~Ci~~Wl~~~-----~~CP~Cr~~~~~~~ 103 (106)
T 3dpl_R 74 NHAFHFHCISRWLKTR-----QVCPLDNREWEFQK 103 (106)
T ss_dssp SCEEEHHHHHHHHTTC-----SBCSSSCSBCCEEE
T ss_pred CcEECHHHHHHHHHcC-----CcCcCCCCcceeec
Confidence 4899999999999874 48999999987753
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.36 E-value=3.6e-05 Score=54.65 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=39.2
Q ss_pred CCCCCCceEEeccCCCCc-------cccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 74 VNDDQPQCRICLDIGGED-------LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 74 ~~~~~~~CRIC~~~~~~~-------li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
.+.+...|-||++.-.++ .+.|| .+.+|..|+.+|++.+ ..|++|+.++..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~C-----gH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTEC-----GHVFCSQCLRDSLKNA-----NTCPTCRKKINH 63 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTT-----SCEEEHHHHHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCC-----CChHhHHHHHHHHHcC-----CCCCCCCCccCh
Confidence 345678999999862222 56677 3789999999999875 489999999864
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.35 E-value=0.0001 Score=51.94 Aligned_cols=49 Identities=20% Similarity=0.541 Sum_probs=39.1
Q ss_pred CCCCceEEeccCCCCc-cccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 76 DDQPQCRICLDIGGED-LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~-li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
.++..|.||++.-.++ ...||. +.+|..|+.+|+..+ ..|++|+.++.-
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN-----PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS-----CSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc-----CcCcCCChhhHh
Confidence 3567899999876554 677873 679999999999765 489999998863
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.00014 Score=53.57 Aligned_cols=53 Identities=19% Similarity=0.453 Sum_probs=41.4
Q ss_pred CCCCceEEeccCCCC----ccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeee
Q 041664 76 DDQPQCRICLDIGGE----DLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~----~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~ 135 (268)
.+...|-||++.-.+ +.+.|| .+.+|..|+.+|++.+.+ ...|++|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~C-----gH~fC~~Ci~~~~~~~~~--~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHC-----GHTICRQCLEKLLASSIN--GVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSS-----SCEEEHHHHHHHHHHCSS--CBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCC-----CChhhHHHHHHHHHcCCC--CcCCCCCCCcccch
Confidence 356789999987443 566776 478999999999988632 47999999998764
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.32 E-value=0.00011 Score=53.15 Aligned_cols=49 Identities=22% Similarity=0.501 Sum_probs=40.2
Q ss_pred CCCceEEeccCCCCccccc-cccCCcCcccchhHHHHHHHhcCCCcccccccCCceee
Q 041664 77 DQPQCRICLDIGGEDLIAP-CHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~P-C~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~ 133 (268)
+...|.||++.-.++.+.| | .+.+|..|+.+|+..++ ...|++|+.++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~C-----gH~fC~~Ci~~~~~~~~---~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCC-----GNSYCDECIRTALLESD---EHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSS-----CCEECTTHHHHHHHHSS---SSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhCCeEcCCC-----CCHHHHHHHHHHHHhcC---CCcCCCCCCcCC
Confidence 4678999998767777777 6 47899999999998765 369999999754
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.0001 Score=52.58 Aligned_cols=52 Identities=23% Similarity=0.499 Sum_probs=40.8
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
.+...|.||++.-.++.+.|| .+.+|..|+.+|++... ....|++|+.++..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~C-----gH~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDC-----GHNFCLKCITQIGETSC--GFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTT-----CCEEEHHHHHHHCSSSC--SCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCC-----CChhhHHHHHHHHHcCC--CCCCCCCCCCcCCc
Confidence 356789999987667766676 47899999999997432 14799999999864
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.24 E-value=0.00023 Score=52.11 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=39.3
Q ss_pred CCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceee
Q 041664 77 DQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~ 133 (268)
+...|.||++.-.++.+.||. +.+|..|+.+|+..+ ..|++|+.++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCR-----HYFCESCALEHFRAT-----PRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTS-----CEEEHHHHHHHHHHC-----SBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCC-----CHhHHHHHHHHHHCC-----CcCCCcCcccc
Confidence 467899999887778788874 688999999999763 58999999985
No 20
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.21 E-value=0.00013 Score=52.84 Aligned_cols=51 Identities=22% Similarity=0.550 Sum_probs=38.2
Q ss_pred CCCCceEEeccCCCC--c-cccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeeee
Q 041664 76 DDQPQCRICLDIGGE--D-LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRT 136 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~--~-li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~~ 136 (268)
.+...|.||++.-.+ . .+.|| .+.+|..|+.+|++.+ ..|++|+.++....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C-----~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPC-----NHLFHDSCIVPWLEQH-----DSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTT-----SCEEETTTTHHHHTTT-----CSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCC-----CCeecHHHHHHHHHcC-----CcCcCcCCccCCcc
Confidence 356789999886332 2 34576 3789999999999654 48999999987643
No 21
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.20 E-value=6.4e-05 Score=52.01 Aligned_cols=48 Identities=23% Similarity=0.440 Sum_probs=36.7
Q ss_pred CCCceEEeccCCCCc-------cccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 77 DQPQCRICLDIGGED-------LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~-------li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
+...|-||++.-.++ .+.|| .+.+|..|+.+|++.+ ..|++|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~C-----gH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTEC-----GHVFCSQCLRDSLKNA-----NTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETT-----SCEEEHHHHHHHHHHC-----SBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCC-----CCchhHHHHHHHHHcC-----CCCCCCCccCCc
Confidence 467899999862221 45676 3789999999999874 499999998764
No 22
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.17 E-value=7.2e-05 Score=60.18 Aligned_cols=29 Identities=17% Similarity=0.461 Sum_probs=0.0
Q ss_pred CcccchhHHHHHHHhcCCCcccccccCCceeeee
Q 041664 102 QKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135 (268)
Q Consensus 102 ~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~ 135 (268)
.+..|..|+.+|+..+ ..||+|+.+|.+.
T Consensus 85 ~H~FH~~CI~~Wl~~~-----~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 85 NHAFHFHCISRWLKTR-----QVCPLDNREWEFQ 113 (117)
T ss_dssp ----------------------------------
T ss_pred CceEcHHHHHHHHHcC-----CcCCCCCCeeeee
Confidence 4889999999999885 4899999998764
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.00015 Score=51.07 Aligned_cols=50 Identities=20% Similarity=0.458 Sum_probs=39.0
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
.+...|.||++.-.++...|| .+.+|..|+.+|++... ..|++|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~C-----gH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTEC-----GHRFCESCMAALLSSSS----PKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSS-----SCCCCHHHHHHHHTTSS----CCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCC-----CCHHHHHHHHHHHHhCc----CCCCCCCcCCCh
Confidence 456789999987666666676 37799999999997333 689999998753
No 24
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.00021 Score=51.27 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=38.8
Q ss_pred CCCceEEeccCCCCccc-cccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeee
Q 041664 77 DQPQCRICLDIGGEDLI-APCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li-~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~ 135 (268)
+...|.||++.-.++.. .|| .+.+|..|+.+|++.+ ..|++|+.++...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~C-----gH~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITEC-----LHTFCKSCIVRHFYYS-----NRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSS-----CCEECHHHHHHHHHHC-----SSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHCcCEECCC-----CCHHHHHHHHHHHHcC-----CcCCCcCcccCcc
Confidence 45689999987666654 477 4788999999999764 5999999998754
No 25
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13 E-value=0.00026 Score=52.60 Aligned_cols=54 Identities=17% Similarity=0.412 Sum_probs=39.3
Q ss_pred CCCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeee
Q 041664 75 NDDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135 (268)
Q Consensus 75 ~~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~ 135 (268)
+.....|-||++.-.....-+ .| .+-+|..|+.+|++.++ ...|++|+.++...
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~-~C---~h~fH~~Ci~kWl~~~~---~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCE-TC---GIRMHLPCVAKYFQSNA---EPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECS-SS---CCEECHHHHHHHSTTCS---SCCCTTTCSCCCSC
T ss_pred cCCCCcCcchhhHcccCCccC-CC---CchhhHHHHHHHHHhcC---CCCCCCCcCcCCCC
Confidence 445688999998632212111 45 57899999999998765 36999999998764
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.07 E-value=0.00041 Score=50.31 Aligned_cols=53 Identities=23% Similarity=0.530 Sum_probs=41.6
Q ss_pred CCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcC-CCcccccccCCceeee
Q 041664 77 DQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKE-GFAFAHCTECRAMFIL 134 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~-~~~~~~Ce~Ck~~y~~ 134 (268)
+...|.||++.-.++.+.|| .+.+|..|+.+|+..+. ......|++|+.++..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~C-----gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADC-----NHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTT-----SCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcceeCCC-----CCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 46789999987677777786 47899999999998742 1124799999999864
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.03 E-value=0.00048 Score=47.88 Aligned_cols=46 Identities=28% Similarity=0.626 Sum_probs=36.2
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccC
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTEC 128 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~C 128 (268)
.+...|.||++.-.++.+.|| .+.+|..|+.+|++.+++ ...||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~C-----gH~fC~~Ci~~~~~~~~~--~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDC-----GHNFCLKCITQIGETSCG--FFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTT-----SSEECHHHHHHHHHHCSS--CCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCC-----CCcchHHHHHHHHHcCCC--CCcCcCC
Confidence 356789999987677777776 478999999999986431 4689998
No 28
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.00011 Score=52.31 Aligned_cols=48 Identities=31% Similarity=0.803 Sum_probs=38.6
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
.+...|.||++.-.+ .+.||. +.+|..|+.+|+.. ...|++|+.++.-
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~Cg-----H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCA-----HSFCQKCIDKWSDR-----HRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTT-----EEECHHHHHHSSCC-----CSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC-cccCCC-----CcccHHHHHHHHHC-----cCcCCCcCCcccC
Confidence 356789999997555 778873 67999999999973 2699999988763
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.00061 Score=49.38 Aligned_cols=55 Identities=20% Similarity=0.452 Sum_probs=41.9
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcC-CCcccccccCCceeeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKE-GFAFAHCTECRAMFILR 135 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~-~~~~~~Ce~Ck~~y~~~ 135 (268)
.+...|.||++.-.++...|| .+.+|..|+.+|+..+. ......|++|+.++...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~C-----gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDC-----GHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSS-----SCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCceeCCC-----CCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 346789999997667777776 47899999999998731 11247999999998753
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.00063 Score=46.14 Aligned_cols=46 Identities=24% Similarity=0.637 Sum_probs=35.6
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccC
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTEC 128 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~C 128 (268)
.+...|.||++.-.++.+.|| .+.+|..|+.+|+...+. ...|++|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~C-----gH~fC~~Ci~~~~~~~~~--~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIEC-----GHNFCKACITRWWEDLER--DFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSS-----CCCCCHHHHHHHTTSSCC--SCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCC-----CCccCHHHHHHHHHhcCC--CCCCCCC
Confidence 356789999998777777776 367999999999865221 4789988
No 31
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.74 E-value=0.00033 Score=56.65 Aligned_cols=47 Identities=26% Similarity=0.544 Sum_probs=38.5
Q ss_pred CCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 78 QPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 78 ~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
+..|.||++.-.++.+.|| .+.+|..|+.+|+..+ ..||+|+.++..
T Consensus 53 ~~~C~iC~~~~~~~~~~~C-----gH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNC-----AHSFCSYCINEWMKRK-----IECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEETT-----SCEEEHHHHHHHTTTC-----SBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECCC-----CCCccHHHHHHHHHcC-----CcCCCCCCcCCC
Confidence 4579999987777878887 3789999999999764 489999998753
No 32
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.73 E-value=0.00049 Score=49.77 Aligned_cols=50 Identities=16% Similarity=0.421 Sum_probs=40.8
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
.+.-.|-||++.-.++.+.|| .+..++.|+.+|+.... ..|++|+.++..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~C-----gH~fc~~Ci~~~~~~~~----~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVST-----GQTYERSSIQKWLDAGH----KTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETT-----TEEEEHHHHHHHHTTTC----CBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCC-----CCeecHHHHHHHHHHCc----CCCCCCcCCCCh
Confidence 357789999987777877786 47899999999997533 699999998864
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.73 E-value=0.00076 Score=50.27 Aligned_cols=50 Identities=22% Similarity=0.487 Sum_probs=41.1
Q ss_pred CCCCceEEeccCCCCccccc-cccCCcCcccchhHHHHHHHhcCCCcccccccCCceee
Q 041664 76 DDQPQCRICLDIGGEDLIAP-CHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~P-C~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~ 133 (268)
.+.-.|-||++.-.++.+.| | .+.++..|+.+|+..++ ...|++|+.++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~C-----gH~fC~~Ci~~~~~~~~---~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCC-----GNSYCDECIRTALLESD---EHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTT-----CCEECHHHHHHHHHHCT---TCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCC-----CCHHHHHHHHHHHHhcC---CCcCcCCCCcCC
Confidence 35678999998767787778 5 47889999999998765 379999999874
No 34
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.71 E-value=0.00079 Score=51.71 Aligned_cols=50 Identities=22% Similarity=0.519 Sum_probs=40.1
Q ss_pred CCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 78 QPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 78 ~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
...|.||++.-.++.+.|| .+.+|..|+.+|+..+.+ ...|++|+.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~C-----gH~fC~~Ci~~~~~~~~~--~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKC-----DHIFCKFCMLKLLNQKKG--PSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTT-----SCCCCSHHHHHHHHSSSS--SCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCC-----CCHHHHHHHHHHHHhCCC--CCCCcCCCCcCCH
Confidence 4689999987667777776 478999999999987532 3689999998764
No 35
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.70 E-value=0.00057 Score=52.35 Aligned_cols=49 Identities=29% Similarity=0.689 Sum_probs=40.7
Q ss_pred CCCceEEeccCCCCccc-cccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 77 DQPQCRICLDIGGEDLI-APCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li-~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
+...|-||++.-.++.. .|| .+.+|..|+.+|+..++ ..|++|+.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~C-----gH~FC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHC-----SKLCCFSCIRRWLTEQR----AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTT-----CCEEEHHHHHHHHHHTC----SBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCC-----CChhhHHHHHHHHHHCc----CCCCCCCCcCCH
Confidence 46789999987666766 787 47899999999998874 699999999864
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.64 E-value=0.00062 Score=53.80 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=40.1
Q ss_pred CCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 77 DQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
+...|-||++.-.++...|| .+.+|..|+.+|+.... ..||+|+.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~C-----gH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVC-----QHNVCKDCLDRSFRAQV----FSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTT-----SCEEEHHHHHHHHHTTC----CBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeC-----CCcccHHHHHHHHhHCc----CCCCCCCccCCC
Confidence 35689999987677777787 36799999999998543 699999999865
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.55 E-value=0.00047 Score=48.32 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=36.4
Q ss_pred CCCceEEecc-CCCCc----cccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 77 DQPQCRICLD-IGGED----LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 77 ~~~~CRIC~~-~~~~~----li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
++..|-||++ .-.++ .+.|| .+.+|..|+.+|+.... ..|++|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~C-----gH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVC-----GHTLCESCVDLLFVRGA----GNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTT-----CCCEEHHHHHHHHHTTS----SSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCC-----CCHhHHHHHHHHHHcCC----CcCCCCCCcccc
Confidence 3568999998 32222 45677 47899999999987543 689999999863
No 38
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.53 E-value=0.0013 Score=48.73 Aligned_cols=53 Identities=23% Similarity=0.577 Sum_probs=41.8
Q ss_pred CCCCceEEeccCC--CCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeee
Q 041664 76 DDQPQCRICLDIG--GEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135 (268)
Q Consensus 76 ~~~~~CRIC~~~~--~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~ 135 (268)
.++..|-||++.- .+..+.||.| .+-+++.|+.++.... ...|++|+.+|..+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~C---GH~fC~~Cl~~~~~~~----~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTC---GYQICRFCWHRIRTDE----NGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTT---SCCCCHHHHHHHTTSS----CSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCC---CCCcCHHHHHHHHhcC----CCCCCCCCCccCCC
Confidence 4567899999963 3456789988 5789999999987543 37999999999753
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.43 E-value=0.00092 Score=50.66 Aligned_cols=48 Identities=23% Similarity=0.517 Sum_probs=38.2
Q ss_pred CCCceEEeccCCCCcccc-ccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 77 DQPQCRICLDIGGEDLIA-PCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~-PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
+...|.||++.-.++... ||. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCS-----HNYCSLCIRKFLSYK-----TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTC-----CEEEHHHHHHHHTTC-----CBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCC-----CHhhHHHHHHHHHCC-----CCCCCCCCcCCh
Confidence 357899999876666554 773 789999999999853 599999998864
No 40
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.42 E-value=0.00032 Score=50.62 Aligned_cols=54 Identities=20% Similarity=0.445 Sum_probs=41.9
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcC--CCcccccccCCceeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKE--GFAFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~--~~~~~~Ce~Ck~~y~~ 134 (268)
.+...|.||++.-.++...|| .+.+|..|+.+|+..+. ......|++|+.++..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~C-----gH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDC-----GHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSS-----SCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCC-----CCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 357889999987667777776 47899999999997642 1124799999999875
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.36 E-value=0.0012 Score=54.70 Aligned_cols=48 Identities=21% Similarity=0.541 Sum_probs=38.0
Q ss_pred CCCceEEeccCCCCcccc-ccccCCcCcccchhHHHHHHHhcCCCcccccccCCceee
Q 041664 77 DQPQCRICLDIGGEDLIA-PCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~-PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~ 133 (268)
+...|-||++.-.++... || .+.+|..|+.+|+.... ..||+|+.++.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~C-----gH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKEC-----LHRFCADCIITALRSGN----KECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTT-----CCEEEHHHHHHHHHTTC----CBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCC-----CChhHHHHHHHHHHhCc----CCCCCCCCcCC
Confidence 345899999876666544 66 47899999999998643 68999999885
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.30 E-value=0.0013 Score=54.23 Aligned_cols=50 Identities=18% Similarity=0.398 Sum_probs=41.1
Q ss_pred CCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeee
Q 041664 77 DQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~ 135 (268)
+...|.||++.-.++.+.||. +.++..|+.+|+.... ..|++|+.++...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~Cg-----H~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECF-----HNVCKDCLQRSFKAQV----FSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTS-----CEEEHHHHHHHHHTTC----CBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCC-----CchhHHHHHHHHHhCC----CcCCCCCccCCCC
Confidence 457899999877778778874 6789999999998643 6899999998754
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.28 E-value=0.0015 Score=50.86 Aligned_cols=50 Identities=20% Similarity=0.451 Sum_probs=40.9
Q ss_pred CCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeee
Q 041664 77 DQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~ 135 (268)
+...|-||++.-.++...|| .+.+|..|+.+|+..++ ..||+|+.++...
T Consensus 22 ~~~~C~IC~~~~~~p~~~~C-----gH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSC-----KHLFCRICILRCLKVMG----SYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTT-----SCEEEHHHHHHHHHHTC----SBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCcEEcCC-----CCcccHHHHHHHHhHCc----CcCCCCCCCCCHh
Confidence 35789999987777777776 47899999999998754 5899999998754
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.14 E-value=0.0009 Score=52.31 Aligned_cols=49 Identities=22% Similarity=0.444 Sum_probs=38.2
Q ss_pred CCCCceEEeccCCCCc-------cccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 76 DDQPQCRICLDIGGED-------LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~-------li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
.+...|-||++.-.++ .+.|| .+.+|..|+.+|++.+ ..|++|+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~C-----gH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTEC-----GHVFCSQCLRDSLKNA-----NTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETT-----CCEEEHHHHHHHHTTC-----SBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCC-----CChhhHHHHHHHHHhC-----CCCCCCCCcCcc
Confidence 4577899999863333 56777 4789999999999765 489999998864
No 45
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.11 E-value=0.0014 Score=50.43 Aligned_cols=48 Identities=15% Similarity=0.322 Sum_probs=38.9
Q ss_pred CCCceEEeccCCCCcccc-ccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 77 DQPQCRICLDIGGEDLIA-PCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~-PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
+...|-||++.-.++... || .+.+|..|+.+|+..+ ..|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~C-----gH~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIEC-----LHSFCKTCIVRYLETS-----KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTT-----CCEEEHHHHHHHHTSC-----SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCC-----CChhhHHHHHHHHHhC-----CcCcCCCccccc
Confidence 467899999876667664 87 4788999999999764 599999998764
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=95.99 E-value=0.0027 Score=49.75 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=40.7
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
.+...|.||++.-.++...|| .+.++..|+.+|+..+. ..|++|+.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~C-----gH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPC-----GHRFCKACIIKSIRDAG----HKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTT-----SCEEEHHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCc-----CChhhHHHHHHHHhhCC----CCCCCCCCCcCH
Confidence 345789999987667777776 47899999999998875 499999998764
No 47
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.92 E-value=0.0037 Score=59.66 Aligned_cols=50 Identities=26% Similarity=0.623 Sum_probs=41.1
Q ss_pred CCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeeee
Q 041664 78 QPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRT 136 (268)
Q Consensus 78 ~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~~ 136 (268)
...|.||++...++.+.||. +..|..|+.+|+.... ..||+|+.++....
T Consensus 332 ~~~C~ICle~~~~pv~lpCG-----H~FC~~Ci~~wl~~~~----~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCG-----HLMCTSCLTSWQESEG----QGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTC-----CEECHHHHHHHHHHTC----SBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEEeCCC-----ChhhHHHHHHHHhcCC----CCCCCCCCccCCce
Confidence 47899999887778889985 4679999999998533 69999999987654
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.70 E-value=0.00056 Score=53.29 Aligned_cols=49 Identities=24% Similarity=0.536 Sum_probs=39.7
Q ss_pred CCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 77 DQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
++..|-||++.-.++...|| .+.++..|+.+|+.... ..|++|+..+..
T Consensus 14 ~~~~C~iC~~~~~~p~~~~C-----gH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPC-----NHTLCKPCFQSTVEKAS----LCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTT-----SCEECHHHHCCCCCTTT----SBCTTTCCBCHH
T ss_pred CCCCCccCCcccCceeEcCC-----CCHHhHHHHHHHHhHCc----CCCCCCCcccCc
Confidence 45689999987667777787 47899999999996543 699999999864
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.42 E-value=0.0032 Score=49.05 Aligned_cols=51 Identities=22% Similarity=0.472 Sum_probs=37.9
Q ss_pred CCCCCCceEEeccCCCC-----c--cccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 74 VNDDQPQCRICLDIGGE-----D--LIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 74 ~~~~~~~CRIC~~~~~~-----~--li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
...+...|-||++.-.+ . ...|| .+..|..|+.+|++.+ ..|++|+..+..
T Consensus 68 i~~~~~~C~iC~~~~~~~~~~~~~~~~~~C-----gH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTEC-----GHVFCSQCLRDSLKNA-----NTCPTCRKKINH 125 (133)
T ss_dssp CSSSSCBCTTTCCBHHHHHHTTCCEEEETT-----SBEEEHHHHHHHHHHC-----SBCTTTCCBCCG
T ss_pred cCCCCCCCCCCCCccccccccCcceEeCCC-----CChhhHHHHHHHHHcC-----CCCCCCCCcCCh
Confidence 34567889999875221 1 34455 4789999999999875 499999998864
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=95.34 E-value=0.0058 Score=43.19 Aligned_cols=51 Identities=16% Similarity=0.325 Sum_probs=38.0
Q ss_pred CCCCCCceEEeccCCCCcccc--ccccCCcCcc-cchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 74 VNDDQPQCRICLDIGGEDLIA--PCHCRGTQKY-VHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 74 ~~~~~~~CRIC~~~~~~~li~--PC~CkGs~k~-VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
+.+++..|-||++...+..+. ||. +. +=..|+.+|...+ ..|++|+.++.-
T Consensus 4 ~~~~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~~-----~~CPiCR~~i~~ 57 (64)
T 2vje_A 4 PLNAIEPCVICQGRPKNGCIVHGKTG-----HLMACFTCAKKLKKRN-----KPCPVCRQPIQM 57 (64)
T ss_dssp -CGGGSCCTTTSSSCSCEEEEETTEE-----EEEECHHHHHHHHHTT-----CCCTTTCCCCCE
T ss_pred CCCCcCCCCcCCCCCCCEEEECCCCC-----ChhhHHHHHHHHHHcC-----CcCCCcCcchhc
Confidence 344677899999987776655 985 34 3589999999653 489999998753
No 51
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.96 E-value=0.012 Score=55.61 Aligned_cols=56 Identities=25% Similarity=0.688 Sum_probs=39.3
Q ss_pred CCCCceEEeccCCC--Cc-cccccc---cCCcCcccchhHHHHHHHhcCC----C--cccccccCCceeee
Q 041664 76 DDQPQCRICLDIGG--ED-LIAPCH---CRGTQKYVHRSCLDHWRSTKEG----F--AFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~--~~-li~PC~---CkGs~k~VH~~CL~~Wi~~s~~----~--~~~~Ce~Ck~~y~~ 134 (268)
.....|-||++.-. +. -...|. | .+..|..||.+|+++..+ + -+..||.|+.+...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C---~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKC---VLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTC---CCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCcc---CCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 35678999998732 22 234463 6 589999999999987431 1 23589999997764
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=94.71 E-value=0.021 Score=42.49 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=40.8
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
.++-.|-||++.-.++.+.||. +-+-+.|+.+|+... ..|++|+.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cG-----htf~r~~I~~~l~~~-----~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSG-----TVMDRSIILRHLLNS-----PTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTS-----CEEEHHHHHHHHHHC-----SBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCC-----CEECHHHHHHHHhcC-----CCCCCCcCCCCh
Confidence 4578999999888889999963 568899999999853 589999998865
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=94.36 E-value=0.014 Score=41.02 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=36.7
Q ss_pred CCCceEEeccCCCCcccc--ccccCCcCcc-cchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 77 DQPQCRICLDIGGEDLIA--PCHCRGTQKY-VHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~--PC~CkGs~k~-VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
....|.||++...+..+. ||. +. +-..|+.+|.+.+ ..||+|+.++.-
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~~-----~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTG-----HLVTCFHCARRLKKAG-----ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEE-----EEEECHHHHHHHHHTT-----CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCC-----CHhHHHHHHHHHHHhC-----CcCCCcCchhhc
Confidence 467899999976665444 985 44 6789999998653 589999998753
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.27 E-value=0.023 Score=49.57 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=41.7
Q ss_pred CCCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 75 NDDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 75 ~~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
..+.-.|-||++.-.+|.+.||. +-+-+.|+.+|+...+ ..||+|+.++..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~g-----h~f~~~~i~~~~~~~~----~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSG-----ITYDRKDIEEHLQRVG----HFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSC-----CEEETTHHHHHHHHTC----SSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCCeECCCC-----CEECHHHHHHHHHHCC----CCCcCCCCCCch
Confidence 34577999999988899999973 5677899999998765 349999998864
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=94.21 E-value=0.0061 Score=44.11 Aligned_cols=45 Identities=20% Similarity=0.655 Sum_probs=36.7
Q ss_pred CCCceEEeccCCCCccccccccCCcCcc-cchhHHHHHHHhcCCCcccccccCCceeeee
Q 041664 77 DQPQCRICLDIGGEDLIAPCHCRGTQKY-VHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~PC~CkGs~k~-VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~ 135 (268)
++..|.||++...++...||. +. +...|+.+| ..|++|+.++.-.
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCg-----H~~~C~~C~~~~---------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCG-----HLVTCKQCAEAV---------DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTC-----CBCCCHHHHTTC---------SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCCEEEcCCC-----ChhHHHHhhhcC---------ccCCCcCcCccCc
Confidence 356899999887777788984 66 899999988 4899999988643
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.18 E-value=0.0072 Score=47.21 Aligned_cols=46 Identities=17% Similarity=0.422 Sum_probs=37.7
Q ss_pred CCCceEEeccCCCCcccc-ccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 77 DQPQCRICLDIGGEDLIA-PCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~-PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
+...|.||++.-.++.+. || .+.++..|+.+|+. ..|++|+.++..
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~C-----gH~fC~~Ci~~~~~-------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGC-----EHIFCSNCVSDCIG-------TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSS-----SCCBCTTTGGGGTT-------TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCccEeCCC-----CCHHHHHHHHHHhc-------CCCcCCCCcCcc
Confidence 467899999876777766 77 47889999999986 489999999743
No 57
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=94.10 E-value=0.03 Score=42.92 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=40.9
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
.++-.|-||++.-.++.+.||. .+-+-+.|+.+|+... ..|++|+.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG----~htf~r~cI~~~l~~~-----~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSS----RVTVDRSTIARHLLSD-----QTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTT----CCEEEHHHHHHHTTTS-----CBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCC----CeEECHHHHHHHHHhC-----CCCCCCCCCCCh
Confidence 4578999999888889988874 2567799999999762 489999998864
No 58
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=93.13 E-value=0.045 Score=42.12 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=40.8
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
.++-.|-||++.-.+|.+.||. +-+-+.|+.+|+.. . ..||+|+.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cG-----htf~r~~I~~~l~~-~----~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSG-----TIMDRSIILRHLLN-S----PTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTT-----EEEEHHHHHHHTTS-C----SBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCC-----CEEchHHHHHHHHc-C----CCCCCCCCCCCh
Confidence 4678999999888889999963 56889999999974 2 589999998864
No 59
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=93.13 E-value=0.011 Score=48.31 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=39.2
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
.+.-.|-||++.-.++...|| .+.++..|+.+|+..+. ..|++|+.+...
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~C-----gH~FC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQC-----GHRYCSFCLASILSSGP----QNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTT-----SCEEEHHHHHHHGGGSC----EECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcEECCC-----CCccCHHHHHHHHhcCC----CCCCCCCCcccc
Confidence 346789999987677777776 47889999999997543 699999997543
No 60
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.00 E-value=0.038 Score=49.11 Aligned_cols=52 Identities=19% Similarity=0.535 Sum_probs=38.2
Q ss_pred CCCCceEEeccCCCCccccccc-cCCcCcccchhHHHHHHHhcCCCcccccccCCceeeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCH-CRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~-CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~ 135 (268)
+..+.|-||++.-.-. .-|. | ....|..|+.+|+++.+ ...||.|+.++...
T Consensus 178 ~~i~~C~iC~~iv~~g--~~C~~C---~~~~H~~C~~~~~~~~~---~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG--QSCETC---GIRMHLPCVAKYFQSNA---EPRCPHCNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSSC--EECSSS---CCEECHHHHHHHTTTCS---SCBCTTTCCBCCSC
T ss_pred CCCCcCcchhhHHhCC--cccCcc---ChHHHHHHHHHHHHhCC---CCCCCCCCCCCCCC
Confidence 4578999998852211 2232 5 47899999999998765 37999999998764
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.79 E-value=0.1 Score=37.23 Aligned_cols=48 Identities=19% Similarity=0.548 Sum_probs=37.2
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcc-cchhHHHHHHHhcCCCcccccccCCceeeeeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKY-VHRSCLDHWRSTKEGFAFAHCTECRAMFILRTN 137 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~-VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~~~ 137 (268)
.+...|.||++...+..+.||. +. +-..|+.+ ...|++|+.++....+
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCg-----H~~~C~~C~~~---------~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCR-----HTCLCDGCVKY---------FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTT-----BCCSCTTHHHH---------CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCcCcCCCCEEEECCC-----ChhhhHHHHhc---------CCCCCCCCcchhceEE
Confidence 3567899999988888889995 34 77789872 2699999998865443
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=92.77 E-value=0.043 Score=45.28 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=40.1
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
.+.-.|-||++.-.++...|| .+.+...|+.+|+..+. ..|++|+.++..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~C-----gH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPC-----GHRFCKACIIKSIRDAG----HKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTT-----SCEEEHHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCcEECCC-----CCHHHHHHHHHHHHhCC----CCCCCCccCcch
Confidence 346789999987677777665 47789999999998765 499999988754
No 63
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.91 E-value=0.029 Score=38.24 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=36.7
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILR 135 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~ 135 (268)
.+...|.||++.-.++.+.||. +.++..|+.+| ...|++|+.++.+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~Cg-----H~fC~~Ci~~~--------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCL-----HTLCSGCLEAS--------GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTS-----CCSBTTTCSSS--------SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCC-----CcccHHHHccC--------CCCCCcCCcEeecC
Confidence 3567899999876777788873 67889998772 36899999998763
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.88 E-value=0.11 Score=39.17 Aligned_cols=52 Identities=12% Similarity=0.200 Sum_probs=40.0
Q ss_pred CCCCCceEEeccCCCCccccc-cccCCcCcccchhHHHHHHHhc-CCCccccccc--CCce
Q 041664 75 NDDQPQCRICLDIGGEDLIAP-CHCRGTQKYVHRSCLDHWRSTK-EGFAFAHCTE--CRAM 131 (268)
Q Consensus 75 ~~~~~~CRIC~~~~~~~li~P-C~CkGs~k~VH~~CL~~Wi~~s-~~~~~~~Ce~--Ck~~ 131 (268)
..++-.|-||++.-.++.+.| |. +-+-+.|+.+|+... ++.....||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 456788999998877888886 73 677899999999875 2122479999 9876
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.24 E-value=0.086 Score=37.83 Aligned_cols=43 Identities=21% Similarity=0.665 Sum_probs=34.0
Q ss_pred CCceEEeccCCCCccccccccCCcCcc-cchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 78 QPQCRICLDIGGEDLIAPCHCRGTQKY-VHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 78 ~~~CRIC~~~~~~~li~PC~CkGs~k~-VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
...|.||++...++.+.||. +. +...|+.+ ...|++|+.++.-
T Consensus 25 ~~~C~IC~~~~~~~~~~pCg-----H~~~C~~C~~~---------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCG-----HLVTCKQCAEA---------VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSC-----CCCBCHHHHHH---------CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCC-----CHHHHHHHhhC---------CCCCccCCceecC
Confidence 45799999987788888984 55 78999853 2589999998864
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=90.23 E-value=0.095 Score=44.78 Aligned_cols=50 Identities=14% Similarity=0.081 Sum_probs=41.4
Q ss_pred CCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 76 DDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
.+.-.|-||++.-.+|.+.||. +-+=+.|+.+|+...+ ..||+|+.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~G-----htfer~~I~~~l~~~~----~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSG-----ITYDRKDIEEHLQRVG----HFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTS-----CEEEHHHHHHHHHHTC----SBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCC-----CEECHHHHHHHHHhCC----CCCCCCcCCCCh
Confidence 4678999999888889999873 5778999999998754 379999998865
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=88.42 E-value=0.095 Score=48.97 Aligned_cols=46 Identities=22% Similarity=0.624 Sum_probs=37.6
Q ss_pred CCCceEEeccCCCCccccccccCCcCcc-cchhHHHHHHHhcCCCcccccccCCceeeeee
Q 041664 77 DQPQCRICLDIGGEDLIAPCHCRGTQKY-VHRSCLDHWRSTKEGFAFAHCTECRAMFILRT 136 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~PC~CkGs~k~-VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~~ 136 (268)
++..|.||++...++...||. +. +...|+.+| ..||+|+.++.-..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCg-----H~~fC~~C~~~~---------~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCG-----HLVVCQECAPSL---------RKCPICRGIIKGTV 340 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTC-----CEEECTTTGGGC---------SBCTTTCCBCCEEE
T ss_pred CCCCCCccCCcCCceEEcCCC-----ChhHhHHHHhcC---------CcCCCCCCCccCeE
Confidence 468999999987788778985 56 889999887 48999999986543
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.83 E-value=0.38 Score=35.71 Aligned_cols=53 Identities=23% Similarity=0.496 Sum_probs=37.8
Q ss_pred CCCceEEeccCCCC-ccc--cccccCCcCcccchhHHHHHHHhc--CCC-ccccccc--CCceeee
Q 041664 77 DQPQCRICLDIGGE-DLI--APCHCRGTQKYVHRSCLDHWRSTK--EGF-AFAHCTE--CRAMFIL 134 (268)
Q Consensus 77 ~~~~CRIC~~~~~~-~li--~PC~CkGs~k~VH~~CL~~Wi~~s--~~~-~~~~Ce~--Ck~~y~~ 134 (268)
+...|-||++.-.. ..+ .||. +.....|+.+++..+ ++. ....|+. |+..+.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~ 64 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHL 64 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEE
T ss_pred CCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCCcc
Confidence 45689999986433 333 3774 689999999999764 221 3579999 9998644
No 69
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=84.31 E-value=1.1 Score=34.45 Aligned_cols=51 Identities=27% Similarity=0.580 Sum_probs=35.8
Q ss_pred CCCCceEEeccCC----CCccccccc-cCCcCcccchhHHHHHHHhcCCCcccccccCCceee
Q 041664 76 DDQPQCRICLDIG----GEDLIAPCH-CRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133 (268)
Q Consensus 76 ~~~~~CRIC~~~~----~~~li~PC~-CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~ 133 (268)
....+|.||-+.- +.++..-|+ | .--|-+.|++-=+++-. ..|++||++|.
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC---~FPvCrpCyEYErkeG~----q~CpqCktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNEC---GFPACRPCYEYERREGT----QNCPQCKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSS---CCCCCHHHHHHHHHTSC----SSCTTTCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeecc---CChhhHHHHHHHHhccC----ccccccCCccc
Confidence 3568999998751 223433332 3 34588899997776654 79999999997
No 70
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=83.09 E-value=0.24 Score=36.19 Aligned_cols=46 Identities=20% Similarity=0.456 Sum_probs=35.5
Q ss_pred CCceEEeccCCCCccccccccCCcCcc-cchhHHHHHHHhcCCCcccccccCCceeeeeee
Q 041664 78 QPQCRICLDIGGEDLIAPCHCRGTQKY-VHRSCLDHWRSTKEGFAFAHCTECRAMFILRTN 137 (268)
Q Consensus 78 ~~~CRIC~~~~~~~li~PC~CkGs~k~-VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~~~ 137 (268)
...|.||++...+....||. +. +=..|+.+| ..|++|+.++.-..+
T Consensus 18 ~~~C~IC~~~~~~~v~~pCg-----H~~~C~~C~~~~---------~~CP~Cr~~i~~~~~ 64 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCG-----HTVCCESCAAQL---------QSCPVCRSRVEHVQH 64 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTC-----BCCBCHHHHTTC---------SBCTTTCCBCCEEEE
T ss_pred CCEeEEeCcccCcEEEECCC-----CHHHHHHHHHhc---------CcCCCCCchhhCeEE
Confidence 56899999987788888985 34 567898765 399999999876543
No 71
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.11 E-value=1.8 Score=32.96 Aligned_cols=51 Identities=20% Similarity=0.524 Sum_probs=32.5
Q ss_pred CCCCCceEEeccCCCCcccc--ccccCCcCcccchhHHHHHHHhcCCCcccccccCCce
Q 041664 75 NDDQPQCRICLDIGGEDLIA--PCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAM 131 (268)
Q Consensus 75 ~~~~~~CRIC~~~~~~~li~--PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~ 131 (268)
+.+...| ||....+..+|. -|.|. ..|+|..|+. +.... .....|+.|...
T Consensus 33 ~~e~~yC-iC~~~~~g~MI~CD~~dC~--~~WfH~~CVg--l~~~p-~g~W~Cp~C~~~ 85 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGEMIGCDNPDCS--IEWFHFACVG--LTTKP-RGKWFCPRCSQE 85 (91)
T ss_dssp SCCCBCS-TTCCBCCSCCCCCSCSSCS--CCCCCSTTTT--CSSCC-CSSCCCTTTCCC
T ss_pred CCCCcEE-ECCCCCCCCEeEecCCCCC--CCCEecccCC--cCcCC-CCCEECcCccCc
Confidence 3456778 998765555653 33353 2799999987 43321 236899999753
No 72
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=75.88 E-value=1.2 Score=40.33 Aligned_cols=51 Identities=16% Similarity=0.354 Sum_probs=39.2
Q ss_pred CCCCceEEeccCCCCcccc-ccccCCcCcccchhHHHHHHHhcCCCccccccc--CCceeee
Q 041664 76 DDQPQCRICLDIGGEDLIA-PCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTE--CRAMFIL 134 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~-PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~--Ck~~y~~ 134 (268)
...-.|-||.+--.+|... .|. +-.=+.|+.+|+...+ ...||+ |+..+..
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CG-----HsFcR~cI~~~~~~~~---~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCN-----HVFDRDGIQNYLQGYT---TRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSC-----CEEEHHHHHHHSTTCS---CEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCCeeeCCCC-----CcccHHHHHHHHHhCC---CCCCCcccccCcCch
Confidence 4577999999876666653 553 5678899999997654 479999 9998865
No 73
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=71.99 E-value=1.8 Score=31.25 Aligned_cols=51 Identities=20% Similarity=0.524 Sum_probs=32.1
Q ss_pred CCCCCceEEeccCCCCcccc--ccccCCcCcccchhHHHHHHHhcCCCcccccccCCce
Q 041664 75 NDDQPQCRICLDIGGEDLIA--PCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAM 131 (268)
Q Consensus 75 ~~~~~~CRIC~~~~~~~li~--PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~ 131 (268)
+.+...| ||...+...+|. -|.|. ..|+|..|+. +.... .....|+.|...
T Consensus 13 ~~~~~~C-~C~~~~~g~MI~CD~~~C~--~~wfH~~Cvg--l~~~p-~g~w~Cp~C~~~ 65 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGEMIGCDNPDCS--IEWFHFACVG--LTTKP-RGKWFCPRCSQE 65 (71)
T ss_dssp TTSCCCS-TTCCCSCSSEECCSCSSCS--CCCEETTTTT--CSSCC-SSCCCCTTTSSC
T ss_pred CCCCCEE-ECCCCCCCCEeEeeCCCCC--CccEecccCC--cCcCC-CCCEECCCCCcc
Confidence 3456778 898765455553 22352 2799999997 43322 236899999653
No 74
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=71.86 E-value=1.5 Score=30.53 Aligned_cols=46 Identities=9% Similarity=0.165 Sum_probs=35.0
Q ss_pred CceEEeccCCCCcccc-ccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeee
Q 041664 79 PQCRICLDIGGEDLIA-PCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFIL 134 (268)
Q Consensus 79 ~~CRIC~~~~~~~li~-PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~ 134 (268)
-.|.||.+.-.++.+. +| -.-+=+.|+++|++..+ .|++++.+...
T Consensus 4 ~~CpIs~~~m~dPV~~~~s-----G~~yer~~I~~~l~~~~-----~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKS-----RTIFEKSLLEQYVKDTG-----NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEETTT-----TEEEEHHHHHHHHHHHS-----BCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeCCC-----CcEEcHHHHHHHHHhCC-----CCcCCcCCCCh
Confidence 4688888776677777 44 35677899999998754 59999988754
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=68.93 E-value=1.4 Score=31.41 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=34.6
Q ss_pred CCCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCce
Q 041664 75 NDDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAM 131 (268)
Q Consensus 75 ~~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~ 131 (268)
+.....|.||.+.+ +++. |.+=.+.+|..||.-.+.... .....|+.|...
T Consensus 9 ~~~~~~C~vC~~~~--~ll~---Cd~C~~~~H~~Cl~P~l~~~P-~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDGT--DVLR---CTHCAAAFHWRCHFPAGTSRP-GTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCCT--TCEE---CSSSCCEECHHHHCTTTCCCC-SSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCCC--eEEE---CCCCCCceecccCCCccCcCC-CCCEECccccCC
Confidence 44567899997642 3442 344478999999987775532 125899999764
No 76
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=56.01 E-value=32 Score=27.85 Aligned_cols=54 Identities=20% Similarity=0.443 Sum_probs=25.7
Q ss_pred CCchhhhcccee-eeeccchhhHHHHHHHHHHHHHHHHHhhhH-HHHHHhccCCchh
Q 041664 140 PDRWWLRLKFQF-LVARDHTFIFVIVQLIVALLGVLVYKFYGE-ELREIFGYEEHPY 194 (268)
Q Consensus 140 p~~~w~~l~~~~-lv~r~~~~if~~v~~vv~~ig~~vy~~yg~-elr~~~G~~~~p~ 194 (268)
+..||.+++|=. ...|+..-++.+...++.+.|+.... -|. ......++..+|.
T Consensus 12 ~~~WW~k~~FYr~YMlRE~T~v~~~wf~l~Ll~Gl~~L~-~G~~aw~~fv~fl~nPi 67 (130)
T 1kf6_C 12 TSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALK-NGPEAWAGFVDFLQNPV 67 (130)
T ss_dssp CTTGGGSSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHTSSH
T ss_pred CcchhhcCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHhCcH
Confidence 346898877632 23355555544443333333333222 232 2223446677884
No 77
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=53.79 E-value=1.5 Score=30.49 Aligned_cols=49 Identities=20% Similarity=0.565 Sum_probs=29.8
Q ss_pred CCCCceEEeccCCCCcccc--ccccCCcCcccchhHHHHHHHhcCCCcccccccCCc
Q 041664 76 DDQPQCRICLDIGGEDLIA--PCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRA 130 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~--PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~ 130 (268)
.+...| ||...+++.+|. -|.|. ..|+|..|+. +.... .....|+.|..
T Consensus 8 ~e~~~C-~C~~~~~g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p-~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSYGEMIGCDNPDCS--IEWFHFACVG--LTTKP-RGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCS--SCEEETGGGT--CSSCC-SSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCCCCEEEeCCCCCC--CceEehhcCC--CCcCC-CCCEECcCccC
Confidence 345667 887765555553 33342 2799999997 43322 23578888854
No 78
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=52.16 E-value=1.7 Score=30.26 Aligned_cols=49 Identities=22% Similarity=0.579 Sum_probs=29.5
Q ss_pred CCCCceEEeccCCCCcccc--ccccCCcCcccchhHHHHHHHhcCCCcccccccCCc
Q 041664 76 DDQPQCRICLDIGGEDLIA--PCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRA 130 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~--PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~ 130 (268)
.+...| ||...++..+|. -|.|. ..|.|.+|+. +.... .....|+.|..
T Consensus 7 ~e~~yC-~C~~~~~g~mi~CD~~~C~--~~wfH~~Cvg--l~~~p-~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGEMIGCDNPDCP--IEWFHFACVD--LTTKP-KGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCS--SCEEETGGGT--CSSCC-SSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCCCeeEeeCCCCC--CCCEecccCC--cccCC-CCCEECcCccC
Confidence 345566 887755555553 33352 2699999987 43322 23578888854
No 79
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=44.09 E-value=2.7 Score=29.52 Aligned_cols=49 Identities=22% Similarity=0.560 Sum_probs=29.9
Q ss_pred CCCCceEEeccCCCCcccc--ccccCCcCcccchhHHHHHHHhcCCCcccccccCCc
Q 041664 76 DDQPQCRICLDIGGEDLIA--PCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRA 130 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li~--PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~ 130 (268)
.+...| ||...+...+|. -|.|+ ..|.|-+|+. +... ......|+.|..
T Consensus 9 ~e~~yC-~C~~~~~g~MI~CD~c~C~--~~WfH~~Cvg--l~~~-p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSYGEMIGCDNEQCP--IEWFHFSCVS--LTYK-PKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCS--SCEEETGGGT--CSSC-CSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCCCCeeeeeCCCCC--cccEecccCC--cCcC-CCCCEECcCccc
Confidence 345667 887754445553 33353 3899999987 3332 223578888854
No 80
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=42.50 E-value=4.9 Score=30.45 Aligned_cols=49 Identities=14% Similarity=0.474 Sum_probs=31.5
Q ss_pred CCCCceEEeccCCCCccc--cccccCCcCcccchhHHHHHHHhcCCCccccccc-CCc
Q 041664 76 DDQPQCRICLDIGGEDLI--APCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTE-CRA 130 (268)
Q Consensus 76 ~~~~~CRIC~~~~~~~li--~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~-Ck~ 130 (268)
.+...| ||...+.+.+| .-|.|. ..|+|..|+. |.... .....|+. |..
T Consensus 24 ~~~~yC-iC~~~~~g~MI~CD~c~C~--~eWfH~~CVg--l~~~p-~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGPMVACDNPACP--FEWFHYGCVG--LKQAP-KGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCSSSEECCCSSSCS--CSCEETTTSS--CSSCT-TSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCCCCEEEecCCCCc--cccCcCccCC--CCcCC-CCCccCChhhcc
Confidence 456678 89875544555 344453 3799999986 33321 23689999 973
No 81
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=38.73 E-value=5.2 Score=30.64 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=26.6
Q ss_pred CCCCCCceEEeccCCC-CccccccccCCcCcccchhHHHHHH
Q 041664 74 VNDDQPQCRICLDIGG-EDLIAPCHCRGTQKYVHRSCLDHWR 114 (268)
Q Consensus 74 ~~~~~~~CRIC~~~~~-~~li~PC~CkGs~k~VH~~CL~~Wi 114 (268)
+..++..|.||.+.++ ++++. |.+=.+..|..||.-..
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll~---C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQFF---CTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSEE---CSSSCCEECTTTTTCCC
T ss_pred CCCCCCCCcCCCCCCCCcCCeE---CCCCCCCcChHHhCCcc
Confidence 4557889999988754 34442 23446899999997654
No 82
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.17 E-value=19 Score=23.40 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=18.3
Q ss_pred CCCCCCCCChhHHHHHHHhcC
Q 041664 247 KNKDIPELDPSHVSELRMLGL 267 (268)
Q Consensus 247 ~~~~~p~~~~~~~~~~~~~~~ 267 (268)
|+.+.|..+++.+++|..+|.
T Consensus 1 ~~~~~~~~~~~~v~~L~~MGF 21 (47)
T 2ekk_A 1 GSSGSSGVNQQQLQQLMDMGF 21 (47)
T ss_dssp CCCCCCSSCHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHcCC
Confidence 567889999999999999884
No 83
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.91 E-value=17 Score=26.21 Aligned_cols=54 Identities=24% Similarity=0.455 Sum_probs=33.9
Q ss_pred CCCCceEEeccCC--CCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceee
Q 041664 76 DDQPQCRICLDIG--GEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133 (268)
Q Consensus 76 ~~~~~CRIC~~~~--~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~ 133 (268)
.+...| ||.... +..+|.==.| ..|.|..|+.-=...........|+.|.....
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C---~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLC---QDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTT---CCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CCccEE-EcCCccCCCCceEEcCCC---CCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 445667 887764 3456665556 48999999852222111124689999987653
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=32.47 E-value=5.5 Score=33.14 Aligned_cols=49 Identities=27% Similarity=0.454 Sum_probs=32.3
Q ss_pred CCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCce
Q 041664 77 DQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAM 131 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~ 131 (268)
++..|.+|..+++ ++ .|.+-.+..|..||..-+.... .....|+.|...
T Consensus 3 ~~~~C~~C~~~g~--ll---~Cd~C~~~~H~~C~~p~l~~~p-~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNGGE--LL---CCEKCPKVFHLSCHVPTLTNFP-SGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCCSS--CE---ECSSSSCEECTTTSSSCCSSCC-SSCCCCTTTSCS
T ss_pred CCCccccCCCCCe--ee---ecCCCCcccCccccCCCCCCCC-CCCEECccccCc
Confidence 4678999986532 32 2445578999999865544321 125899999864
No 85
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=32.24 E-value=9 Score=26.48 Aligned_cols=51 Identities=24% Similarity=0.447 Sum_probs=32.3
Q ss_pred CCCCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCce
Q 041664 75 NDDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAM 131 (268)
Q Consensus 75 ~~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~ 131 (268)
..+...|.+|... +.++. |.+=.+..|..||..=+.+. ......|+.|..+
T Consensus 8 ~~~~~~C~vC~~~--g~ll~---CD~C~~~fH~~Cl~p~l~~~-p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIIL---CDTCPRAYHMVCLDPDMEKA-PEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEE---CSSSSCEEEHHHHCTTCCSC-CCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC--CcEEE---CCCCChhhhhhccCCCCCCC-CCCceECcccccc
Confidence 4457889999864 23332 33446799999987533222 1235899999753
No 86
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=28.50 E-value=17 Score=24.98 Aligned_cols=54 Identities=15% Similarity=0.347 Sum_probs=32.3
Q ss_pred CCCCCceEEeccCCC---CccccccccCCcCcccchhHHHHHHHhc--CCCcccccccCCce
Q 041664 75 NDDQPQCRICLDIGG---EDLIAPCHCRGTQKYVHRSCLDHWRSTK--EGFAFAHCTECRAM 131 (268)
Q Consensus 75 ~~~~~~CRIC~~~~~---~~li~PC~CkGs~k~VH~~CL~~Wi~~s--~~~~~~~Ce~Ck~~ 131 (268)
+.+...|.+|...+. +.++. |.+=.+.+|..|+.-=+.+. .......|+.|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~---Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVI---CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEE---CSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEE---CCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456789999987632 33332 33446789999987433210 01124788888643
No 87
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=28.03 E-value=18 Score=23.63 Aligned_cols=47 Identities=26% Similarity=0.516 Sum_probs=28.0
Q ss_pred ceEEeccCCC-CccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCc
Q 041664 80 QCRICLDIGG-EDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRA 130 (268)
Q Consensus 80 ~CRIC~~~~~-~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~ 130 (268)
.|.||...++ +.++. |.+=.++.|..||..=+.+. ......|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~---Cd~C~~~~H~~Cl~p~l~~~-P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLIL---CDECNKAFHLFCLRPALYEV-PDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEE---CTTTCCEECHHHHCTTCCSC-CSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEE---CCCCChhhCcccCCCCcCCC-CCCcEECcCccc
Confidence 5888887643 33432 23446899999985322221 113578988864
No 88
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=27.49 E-value=46 Score=25.69 Aligned_cols=48 Identities=21% Similarity=0.529 Sum_probs=34.3
Q ss_pred CCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeeee
Q 041664 78 QPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRT 136 (268)
Q Consensus 78 ~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~~ 136 (268)
.--|..|+.. +..||. | +.+|.-..||..-+..++ .|++|+.+...+.
T Consensus 28 ~~nCKsCWf~-~k~LV~---C--~dHYLCl~CLtlmL~~Sd-----rCpIC~~pLPtkl 75 (99)
T 2ko5_A 28 PQFCKSCWFE-NKGLVE---C--NNHYLCLNCLTLLLSVSN-----RCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCSSCSC-CSSEEE---C--SSCEEEHHHHHHTCSSSS-----EETTTTEECCCCS
T ss_pred cccChhhccc-cCCeee---e--cchhhHHHHHHHHHhhcc-----CCcccCCcCCcce
Confidence 4567777764 334553 3 268999999998887775 9999999876543
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=27.49 E-value=5.7 Score=33.76 Aligned_cols=51 Identities=25% Similarity=0.409 Sum_probs=33.8
Q ss_pred CCCceEEeccCCCCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceee
Q 041664 77 DQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFI 133 (268)
Q Consensus 77 ~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~ 133 (268)
+...|.+|..++ +++. |.|-.+..|..||..-+.... .....|+.|...-.
T Consensus 6 ~~~~C~~C~~~g--~ll~---Cd~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGG--DLLC---CEKCPKVFHLTCHVPTLLSFP-SGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCE--EEEE---CSSSSCEECTTTSSSCCSSCC-SSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC--ceEE---cCCCCCccCCccCCCCCCCCC-CCCEEeCceeCccc
Confidence 467899997643 3332 555578999999865554321 12589999987543
No 90
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=26.07 E-value=20 Score=26.99 Aligned_cols=48 Identities=21% Similarity=0.420 Sum_probs=29.4
Q ss_pred CCCceEEeccCC-CCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCc
Q 041664 77 DQPQCRICLDIG-GEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRA 130 (268)
Q Consensus 77 ~~~~CRIC~~~~-~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~ 130 (268)
+...| ||...+ ++.+|.==.| ..|.|..|+.- ..........|+.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C---~~w~H~~C~~~--~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKC---SVWQHIDCMGI--DRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTT---CBEEETTTTTC--CTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCC---CCcCcCcCCCC--CccCCCCCEECCCCcC
Confidence 34557 776553 3456654445 68999999852 2221123589999974
No 91
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=25.83 E-value=37 Score=25.09 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=31.6
Q ss_pred CCCCCceEEeccCC--CC-ccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCce
Q 041664 75 NDDQPQCRICLDIG--GE-DLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAM 131 (268)
Q Consensus 75 ~~~~~~CRIC~~~~--~~-~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~ 131 (268)
..+...|.||...+ ++ .++ -| .+=...+|..|+.-=. -......|+.|...
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll-~C--D~C~~~fH~~Cl~p~~---vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVIL-FC--DMCNLAVHQECYGVPY---IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEE-EC--SSSCCCCCHHHHTCSS---CCSSCCCCHHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEE-EC--CCCCchhhcccCCCCc---cCCCceECccccCc
Confidence 34678999998764 22 333 22 3346789999986311 11125889988654
No 92
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.36 E-value=7.5 Score=26.77 Aligned_cols=53 Identities=21% Similarity=0.388 Sum_probs=32.3
Q ss_pred CCCCCceEEeccCC--CCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCc
Q 041664 75 NDDQPQCRICLDIG--GEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRA 130 (268)
Q Consensus 75 ~~~~~~CRIC~~~~--~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~ 130 (268)
+.++..|.||.... ++.+|.==.| ..|+|..|+.--...........|+.|..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C---~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLC---EMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSS---CCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCC---CCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 45677898998764 3446653345 58999999753211111123578888865
No 93
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=25.23 E-value=33 Score=24.45 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=30.9
Q ss_pred CCCCCceEEeccCC--C-CccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCc
Q 041664 75 NDDQPQCRICLDIG--G-EDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRA 130 (268)
Q Consensus 75 ~~~~~~CRIC~~~~--~-~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~ 130 (268)
..+...|.||...+ + +.++. |.+=.+.+|..|+.-=. -......|+.|..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~---CD~C~~~~H~~Cl~~~~---vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILF---CDMCNLAVHQECYGVPY---IPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEE---CSSSCCEEEHHHHTCSS---CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEE---CCCCCCccccccCCCCc---CCCCCcCCccCcC
Confidence 34578899998764 2 33432 23446799999986311 1112578888864
No 94
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.09 E-value=24 Score=25.18 Aligned_cols=36 Identities=14% Similarity=0.344 Sum_probs=25.5
Q ss_pred ccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCceeeeeeecC
Q 041664 91 DLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMFILRTNCP 139 (268)
Q Consensus 91 ~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y~~~~~~~ 139 (268)
.|+.| .|+|.+.+.- .++ ...|+.|+..|.|+...|
T Consensus 10 iL~CP-~ck~~L~~~~---------~~g---~LvC~~c~~~YPI~dGIP 45 (67)
T 2jny_A 10 VLACP-KDKGPLRYLE---------SEQ---LLVNERLNLAYRIDDGIP 45 (67)
T ss_dssp CCBCT-TTCCBCEEET---------TTT---EEEETTTTEEEEEETTEE
T ss_pred HhCCC-CCCCcCeEeC---------CCC---EEEcCCCCccccCCCCEe
Confidence 35666 7888877642 122 589999999999986544
No 95
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=23.86 E-value=11 Score=30.84 Aligned_cols=53 Identities=25% Similarity=0.446 Sum_probs=32.8
Q ss_pred CCCCceEEeccCC--CCccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCcee
Q 041664 76 DDQPQCRICLDIG--GEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRAMF 132 (268)
Q Consensus 76 ~~~~~CRIC~~~~--~~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~~y 132 (268)
.+...| +|.... +..+|.=-.| ..|.|..|+.---..........|+.|...-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C---~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRC---QNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTT---CCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCC---CchhChhhcCCchhhccCccCeecCCCcchh
Confidence 346678 888753 3346765556 5899999985211211112358999998653
No 96
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.73 E-value=28 Score=18.01 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=10.4
Q ss_pred ccccccCCceeee
Q 041664 122 FAHCTECRAMFIL 134 (268)
Q Consensus 122 ~~~Ce~Ck~~y~~ 134 (268)
...|+.|+..|.-
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 3689999999864
No 97
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.58 E-value=14 Score=26.16 Aligned_cols=51 Identities=20% Similarity=0.445 Sum_probs=32.0
Q ss_pred CCCCCCceEEeccCCC-CccccccccCCcCcccchhHHHHHHHhcCCCcccccccCCc
Q 041664 74 VNDDQPQCRICLDIGG-EDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECRA 130 (268)
Q Consensus 74 ~~~~~~~CRIC~~~~~-~~li~PC~CkGs~k~VH~~CL~~Wi~~s~~~~~~~Ce~Ck~ 130 (268)
.+.+...| ||....+ +.+|.==.| ..|.|..|+. +..........|+.|..
T Consensus 15 ~~~~~~~C-iC~~~~~~~~MIqCd~C---~~WfH~~Cvg--i~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFAGRPMIECNEC---HTWIHLSCAK--IRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCTTCCEEECTTT---CCEEETTTTT--CCTTSCCSSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCCCCCEEECCCC---CccccccccC--cCcccCCCcEECCCCCC
Confidence 34567788 8977644 346764456 5899999975 22222123578888853
No 98
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=23.48 E-value=41 Score=27.00 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=31.9
Q ss_pred CCCCCceEEeccCCCCccccccccCCcCcccchhHHHHHH------HhcCCCcccccccCC
Q 041664 75 NDDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDHWR------STKEGFAFAHCTECR 129 (268)
Q Consensus 75 ~~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~~Wi------~~s~~~~~~~Ce~Ck 129 (268)
+..+..|++|.+++ +++ -|.+-.+..|..||.+=+ +.........|..|.
T Consensus 54 Dg~~~~C~vC~dGG--~Ll---cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG--NLI---CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp TSCBSSCTTTCCCS--EEE---ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCcCeecCCCC--eeE---ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 44567899998653 343 134457899999999742 221122368999994
No 99
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=23.34 E-value=1.5e+02 Score=26.47 Aligned_cols=20 Identities=15% Similarity=0.640 Sum_probs=12.7
Q ss_pred CCchhHHHHHHHHHHHHHHH
Q 041664 190 EEHPYAFYIMAVLAIILVGV 209 (268)
Q Consensus 190 ~~~p~~f~~l~vL~ii~vgL 209 (268)
.+||++||+.+++.++.+++
T Consensus 309 l~~~~gy~~~l~~m~~~~~~ 328 (339)
T 4ev6_A 309 ANNPQGFWLVMALMVVIIMI 328 (339)
T ss_dssp SSCTTHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHH
Confidence 45888888776665554443
No 100
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=23.33 E-value=3.2e+02 Score=26.25 Aligned_cols=15 Identities=20% Similarity=0.729 Sum_probs=8.4
Q ss_pred HHHHhccCCchhHHH
Q 041664 183 LREIFGYEEHPYAFY 197 (268)
Q Consensus 183 lr~~~G~~~~p~~f~ 197 (268)
+.+.+|+.+-...+|
T Consensus 149 le~~~Gfnk~t~~~f 163 (482)
T 4aw6_A 149 IEEKHGFNQQTLGFF 163 (482)
T ss_dssp HHHHTTCBCCCHHHH
T ss_pred ehhhcCCCCCCHHHH
Confidence 345788866444434
No 101
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=22.69 E-value=21 Score=27.39 Aligned_cols=51 Identities=25% Similarity=0.430 Sum_probs=34.0
Q ss_pred CCceEEeccC--CCCcccccc-ccCCcCcccchhHHHHHHHhc-------CCCcccccccCCceee
Q 041664 78 QPQCRICLDI--GGEDLIAPC-HCRGTQKYVHRSCLDHWRSTK-------EGFAFAHCTECRAMFI 133 (268)
Q Consensus 78 ~~~CRIC~~~--~~~~li~PC-~CkGs~k~VH~~CL~~Wi~~s-------~~~~~~~Ce~Ck~~y~ 133 (268)
...|.||... +++.+|.=| .|+ .|+|..|+. +... .......|+.|...-.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~---~WfH~~CVg--lt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQ---KWFHRECTG--MTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTC---CEEEGGGTT--CCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcc---cccccccCC--cCHHHHHhhccCCCCCEECccccCcCC
Confidence 3568899876 344577777 884 899999974 1110 1113589999987643
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=22.65 E-value=46 Score=25.36 Aligned_cols=32 Identities=38% Similarity=0.745 Sum_probs=22.5
Q ss_pred CCCceEEeccCC-------CCccccccccCCcCcccchhHHH
Q 041664 77 DQPQCRICLDIG-------GEDLIAPCHCRGTQKYVHRSCLD 111 (268)
Q Consensus 77 ~~~~CRIC~~~~-------~~~li~PC~CkGs~k~VH~~CL~ 111 (268)
....|.+|+..+ .++|+. |.+=.+..|.+||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~---C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELIS---CADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEE---CTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceE---hhhcCCCCCCchhc
Confidence 467899998753 235664 33346889999995
No 103
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.93 E-value=31 Score=17.83 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=10.4
Q ss_pred ccccccCCceeee
Q 041664 122 FAHCTECRAMFIL 134 (268)
Q Consensus 122 ~~~Ce~Ck~~y~~ 134 (268)
...|++|+..|.-
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 3679999999864
No 104
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=21.46 E-value=47 Score=19.31 Aligned_cols=16 Identities=25% Similarity=0.796 Sum_probs=11.7
Q ss_pred CccccccccCCcCccc
Q 041664 90 EDLIAPCHCRGTQKYV 105 (268)
Q Consensus 90 ~~li~PC~CkGs~k~V 105 (268)
+.--+||.|+|-..|.
T Consensus 8 naachpc~c~~rp~yc 23 (26)
T 1p1p_A 8 NAACHPCSCKDRPSYC 23 (26)
T ss_dssp CSSCCTTTSTTCCGGG
T ss_pred CccccccccCCCCCcc
Confidence 3456899999876654
No 105
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.24 E-value=32 Score=17.79 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=9.8
Q ss_pred cccccCCceeee
Q 041664 123 AHCTECRAMFIL 134 (268)
Q Consensus 123 ~~Ce~Ck~~y~~ 134 (268)
..|+.|+..|.-
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 579999998864
No 106
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.58 E-value=20 Score=18.42 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=10.6
Q ss_pred cccccCCceeeee
Q 041664 123 AHCTECRAMFILR 135 (268)
Q Consensus 123 ~~Ce~Ck~~y~~~ 135 (268)
..|+.|+..|.-.
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 5799999998754
No 107
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=21.02 E-value=26 Score=24.59 Aligned_cols=34 Identities=32% Similarity=0.679 Sum_probs=20.1
Q ss_pred CCCCCceEEeccCCC-Ccccccc--ccCCcCcccchhHHH
Q 041664 75 NDDQPQCRICLDIGG-EDLIAPC--HCRGTQKYVHRSCLD 111 (268)
Q Consensus 75 ~~~~~~CRIC~~~~~-~~li~PC--~CkGs~k~VH~~CL~ 111 (268)
+.+...|-+|....+ +...--| .| .+|+|..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C---~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASC---QKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTT---CCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCc---cccCchhccC
Confidence 455678999988633 3333334 45 5899999973
No 108
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.76 E-value=35 Score=17.67 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=10.0
Q ss_pred cccccCCceeee
Q 041664 123 AHCTECRAMFIL 134 (268)
Q Consensus 123 ~~Ce~Ck~~y~~ 134 (268)
..|+.|+..|.-
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 579999999864
No 109
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.62 E-value=31 Score=18.03 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=10.4
Q ss_pred ccccccCCceeee
Q 041664 122 FAHCTECRAMFIL 134 (268)
Q Consensus 122 ~~~Ce~Ck~~y~~ 134 (268)
...|++|+..|.-
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvg_A 3 PYRCPLCRAGCPS 15 (27)
T ss_dssp TEEETTTTEEESC
T ss_pred CcCCCCCCcccCC
Confidence 3689999999864
No 110
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=20.33 E-value=26 Score=27.19 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=22.2
Q ss_pred CCCCCceEEeccCCCCccccccccCCcCcccchhHHH
Q 041664 75 NDDQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLD 111 (268)
Q Consensus 75 ~~~~~~CRIC~~~~~~~li~PC~CkGs~k~VH~~CL~ 111 (268)
..++..|.+|.+. .+ +--|..++-.++.|..||.
T Consensus 12 ~~~~~~C~~C~~~--G~-ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 12 QMHEDYCFQCGDG--GE-LVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CSSCSSCTTTCCC--SE-EEECCSTTCCCEECTGGGT
T ss_pred CCCCCCCCcCCCC--Cc-EeEECCCCCCcccccccCc
Confidence 3457789999743 23 3345422336799999997
No 111
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.10 E-value=36 Score=17.46 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=9.8
Q ss_pred cccccCCceeee
Q 041664 123 AHCTECRAMFIL 134 (268)
Q Consensus 123 ~~Ce~Ck~~y~~ 134 (268)
..|+.|+..|.-
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 579999998864
Done!