BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041665
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 24/205 (11%)
Query: 22 SDPDILTDFVIPANSSNDAIDGNFFTFTGMRSIIEGDD---------------PPIFRVS 66
SDPD L DF + A+ A+ N T M GDD P V+
Sbjct: 1 SDPDPLQDFCV-ADLDGKAVSVNGHTCKPMSE--AGDDFLFSSKLTKAGNTSTPNGSAVT 57
Query: 67 KASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGF---IDTTNK 123
+ +AE+P N VS A + F G NPPH HPR+ E+ V+ G L VG +D+ NK
Sbjct: 58 ELDVAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNK 117
Query: 124 LYTQTLQIGDMFVFPKGLVHYQYNSKANQPXXXXXXXXXXXXXTVSVPTTVFATG--IDE 181
LY++ ++ G+ FV P+GL+H+Q+N + V VP T+F + I
Sbjct: 118 LYSRVVRAGETFVIPRGLMHFQFNVGKTE-AYMVVSFNSQNPGIVFVPLTLFGSDPPIPT 176
Query: 182 NILAKAFKTDVTTIQKIKAGLAAKA 206
+L KA + + ++ +K+ A +
Sbjct: 177 PVLTKALRVEAGVVELLKSKFAGGS 201
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 24/205 (11%)
Query: 22 SDPDILTDFVIPANSSNDAIDGNFFTFTGMRSIIEGDD---------------PPIFRVS 66
SDPD L DF + A+ A+ N T M GDD P V+
Sbjct: 1 SDPDPLQDFCV-ADLDGKAVSVNGHTCKPMSE--AGDDFLFSSKLTKAGNTSTPNGSAVT 57
Query: 67 KASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGF---IDTTNK 123
+ +AE+P N VS + F G NPPH HPR+ E+ V+ G L VG +D+ NK
Sbjct: 58 ELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNK 117
Query: 124 LYTQTLQIGDMFVFPKGLVHYQYNSKANQPXXXXXXXXXXXXXTVSVPTTVFATG--IDE 181
LY++ ++ G+ FV P+GL+H+Q+N + V VP T+F + I
Sbjct: 118 LYSRVVRAGETFVIPRGLMHFQFNVGKTE-AYMVVSFNSQNPGIVFVPLTLFGSDPPIPT 176
Query: 182 NILAKAFKTDVTTIQKIKAGLAAKA 206
+L KA + + ++ +K+ A +
Sbjct: 177 PVLTKALRVEAGVVELLKSKFAGGS 201
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 24/205 (11%)
Query: 22 SDPDILTDFVIPANSSNDAIDGNFFTFTGMRSIIEGDD---------------PPIFRVS 66
+DPD L DF + A+ A+ N T M GDD P V+
Sbjct: 1 TDPDPLQDFCV-ADLDGKAVSVNGHTCKPMSE--AGDDFLFSSKLTKAGNTSTPNGSAVT 57
Query: 67 KASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGF---IDTTNK 123
+ +AE+P N VS + F G NPPH HPR+ E+ V+ G L VG +D+ NK
Sbjct: 58 ELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNK 117
Query: 124 LYTQTLQIGDMFVFPKGLVHYQYNSKANQPXXXXXXXXXXXXXTVSVPTTVFATG--IDE 181
LY++ ++ G+ FV P+GL+H+Q+N + V VP T+F + I
Sbjct: 118 LYSRVVRAGETFVIPRGLMHFQFNVGKTE-AYMVVSFNSQNPGIVFVPLTLFGSDPPIPT 176
Query: 182 NILAKAFKTDVTTIQKIKAGLAAKA 206
+L KA + + ++ +K+ A +
Sbjct: 177 PVLTKALRVEAGVVELLKSKFAGGS 201
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 68 ASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQ 127
AS EFP +++ A++ GA+ H HP + E +V+ G +++ + K
Sbjct: 223 ASAKEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVS 280
Query: 128 TLQIGDMFVFPKGLVHYQYNS 148
LQ GD+ PKG H NS
Sbjct: 281 RLQQGDVGYVPKGYGHAIRNS 301
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 73 FPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIG 132
FP G ++ + GAI H H +AE +V+ G + K+ + G
Sbjct: 46 FPVSKG--MAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKG 103
Query: 133 DMFVFPKGLVH 143
++ FP+G H
Sbjct: 104 GLWYFPRGWGH 114
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 29 DFVIPANSSNDAIDGNFFTFTGMRSIIEGDDPPIFRVSKASMAEFPALNGQSVSTAILQF 88
D ++P + + + F+F+ + +E + ++ E P +++++ ++
Sbjct: 33 DMLVPPETDHGTVSNMKFSFSDTHNRLEKGG----YAREVTVRELPI--SENLASVNMRL 86
Query: 89 PAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVH 143
GAI H H + AE +++ G V +D + + + GD++ FP GL H
Sbjct: 87 KPGAIRELHWH-KEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPH 140
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFP 138
+++++A++ GA+ H HP + E + +SG + + T Q GD+ P
Sbjct: 255 KTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVP 314
Query: 139 KGLVHYQYN 147
+ HY N
Sbjct: 315 FAMGHYVEN 323
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 29 DFVIPANSSNDAIDGNFFTFTGMRSIIEGDDPPIFRVSKASMAEFPALNGQSVSTAILQF 88
D ++P + + + F+F+ + +E + ++ E P +++++ ++
Sbjct: 33 DMLVPPETDHGTVSNMKFSFSDTHNRLEKGG----YAREVTVRELPI--SENLASVNMRL 86
Query: 89 PAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVH 143
GAI H H + AE +++ G V +D + + + GD++ FP GL H
Sbjct: 87 KPGAIRELHWH-KEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPH 140
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFP 138
+++++A++ GA+ H HP + E + +SG + + T Q GD+ P
Sbjct: 255 KTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVP 314
Query: 139 KGLVHYQYN 147
+ HY N
Sbjct: 315 FAMGHYVEN 323
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 29 DFVIPANSSNDAIDGNFFTFTGMRSIIEGDDPPIFRVSKASMAEFPALNGQSVSTAILQF 88
D ++P + + + F+F+ + +E + ++ E P +++++ ++
Sbjct: 33 DMLVPPETDHGTVSNMKFSFSDTHNRLEKGG----YAREVTVRELPI--SENLASVNMRL 86
Query: 89 PAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVH 143
GAI H H + AE +++ G V +D + + + GD++ FP GL H
Sbjct: 87 KPGAIRELHWH-KEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPH 140
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFP 138
+++++A++ GA+ H HP + E + +SG + + T Q GD+ P
Sbjct: 253 KTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVP 312
Query: 139 KGLVHYQYN 147
+ HY N
Sbjct: 313 FAMGHYVEN 321
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 29 DFVIPANSSNDAIDGNFFTFTGMRSIIEGDDPPIFRVSKASMAEFPALNGQSVSTAILQF 88
D ++P + + + F+F+ + +E + ++ E P +++++ ++
Sbjct: 33 DMLVPPETDHGTVSNMKFSFSDTHNRLEKGG----YAREVTVRELPI--SENLASVNMRL 86
Query: 89 PAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVH 143
GAI H H + AE +++ G V +D + + + GD++ FP GL H
Sbjct: 87 KPGAIRELHWH-KEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPH 140
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFP 138
+++++A++ GA+ H HP + E + +SG + + T Q GD+ P
Sbjct: 255 KTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVP 314
Query: 139 KGLVHYQYN 147
+ HY N
Sbjct: 315 FAMGHYVEN 323
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 29 DFVIPANSSNDAIDGNFFTFTGMRSIIEGDDPPIFRVSKASMAEFPALNGQSVSTAILQF 88
D ++P + + + F+F+ + +E + ++ E P +++++ ++
Sbjct: 33 DMLVPPETDHGTVSNMKFSFSDTHNRLEKGG----YAREVTVRELPI--SENLASVNMRL 86
Query: 89 PAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVH 143
GAI H H + AE +++ G V +D + + + GD++ FP GL H
Sbjct: 87 KPGAIRELHWH-KEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPH 140
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFP 138
+++++A++ GA+ H HP + E + +SG + + T Q GD+ P
Sbjct: 255 KTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVP 314
Query: 139 KGLVHYQYN 147
+ HY N
Sbjct: 315 FAMGHYVEN 323
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 29 DFVIPANSSNDAIDGNFFTFTGMRSIIEGDDPPIFRVSKASMAEFPALNGQSVSTAILQF 88
D ++P + + + F+F+ + +E + ++ E P +++++ ++
Sbjct: 28 DMLVPPETDHGTVSNMKFSFSDTHNRLEKGG----YAREVTVRELPI--SENLASVNMRL 81
Query: 89 PAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVH 143
GAI H H + AE +++ G V +D + + + GD++ FP GL H
Sbjct: 82 KPGAIRELHWH-KEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPH 135
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFP 138
+++++A++ GA+ H HP + E + +SG + + T Q GD+ P
Sbjct: 250 KTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVP 309
Query: 139 KGLVHYQYN 147
+ HY N
Sbjct: 310 FAMGHYVEN 318
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 29 DFVIPANSSNDAIDGNFFTFTGMRSIIEGDDPPIFRVSKASMAEFPALNGQSVSTAILQF 88
D ++P + + + F+F+ + +E + ++ E P +++++ ++
Sbjct: 33 DMLVPPETDHGTVSNMKFSFSDTHNRLEKGG----YAREVTVRELPI--SENLASVNMRL 86
Query: 89 PAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVH 143
GAI H H + AE +++ G V +D + + + GD++ FP GL H
Sbjct: 87 KPGAIAELHWH-KEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPH 140
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFP 138
+++++A++ GA+ H HP + E + +SG + + T Q GD+ P
Sbjct: 255 KTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVP 314
Query: 139 KGLVHYQYN 147
+ HY N
Sbjct: 315 FAMGHYVEN 323
>pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 29 DFVIPANSSNDAIDGNFFTFTGMRSIIEGDDPPIFRVSKASMAEFPALNGQSVSTAILQF 88
D ++P + + + F+F+ + +E + ++ E P +++++ +
Sbjct: 33 DXLVPPETDHGTVSNXKFSFSDTHNRLEKGG----YAREVTVRELPI--SENLASVNXRL 86
Query: 89 PAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVH 143
GAI H H + AE + + G V +D + + + GD++ FP GL H
Sbjct: 87 KPGAIRELHWH-KEAEWAYXIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPH 140
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFP 138
+++++A++ GA H HP + E + +SG + T Q GD+ P
Sbjct: 255 KTIASALVTVEPGAXRELHWHPNTHEWQYYISGKARXTVFASDGHARTFNYQAGDVGYVP 314
Query: 139 KGLVHYQYN 147
HY N
Sbjct: 315 FAXGHYVEN 323
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 97 HTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVH 143
H H + E+ V G L++ F D TLQ G+ +V PKG+ H
Sbjct: 45 HEHADTDEVFIVXEGTLQIAFRDQNI-----TLQAGEXYVIPKGVEH 86
>pdb|2D40|A Chain A, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
pdb|2D40|B Chain B, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
pdb|2D40|C Chain C, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
pdb|2D40|D Chain D, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
Length = 354
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 65 VSKASMAEFPALNGQSVSTAILQ-----FPAGAINPPHTHPRSAELLFVVSG 111
V + + E PAL GQS TA L G + P H H +SA L F+V G
Sbjct: 79 VRRVLVLENPALRGQSSITATLYAGLQLIXPGEVAPSHRHNQSA-LRFIVEG 129
>pdb|2I45|A Chain A, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|B Chain B, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|C Chain C, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|D Chain D, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|E Chain E, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|F Chain F, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|G Chain G, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|H Chain H, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|I Chain I, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|J Chain J, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
Length = 107
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 97 HTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVH 143
HTH S ++LF V G V F D + T++ G+ V PK + H
Sbjct: 43 HTHGYSDKVLFAVEGDXAVDFADGG----SXTIREGEXAVVPKSVSH 85
>pdb|1SVQ|A Chain A, Structure Of Severin Domain 2 In Solution
pdb|1SVR|A Chain A, Structure Of Severin Domain 2 In Solution
Length = 114
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 124 LYTQTLQIGDMFVFPKGLVHYQYNSKANQP 153
L T +L GD F+ GL YQ+N + P
Sbjct: 31 LATSSLNSGDCFLLDAGLTIYQFNGSKSSP 60
>pdb|1SVY|A Chain A, Severin Domain 2, 1.75 Angstrom Crystal Structure
Length = 114
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 124 LYTQTLQIGDMFVFPKGLVHYQYNSKANQP 153
L T +L GD F+ GL YQ+N + P
Sbjct: 31 LATSSLNSGDCFLLDAGLTIYQFNGSKSSP 60
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 34 ANSSNDAIDGNFFTFTGMRSIIEGDDPPIFR-----VSKASMAEFPALNGQSVSTAILQF 88
+ S + ID T +I + P I+ V+ A+ +FPAL+ +S
Sbjct: 286 SKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSL 345
Query: 89 PAGAINPPHTHPRSAELLFVVSGILEVGFIDTT-NKLYTQTLQIGDMFVFPKGLV 142
A+ PH + + +++ ++G + ++ +++ LQ G + + P+ V
Sbjct: 346 RKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFV 400
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 34 ANSSNDAIDGNFFTFTGMRSIIEGDDPPIFR-----VSKASMAEFPALNGQSVSTAILQF 88
+ S + ID T +I + P I+ V+ A+ +FPAL+ +S
Sbjct: 286 SKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSL 345
Query: 89 PAGAINPPHTHPRSAELLFVVSGILEVGFIDTT-NKLYTQTLQIGDMFVFPKGLV 142
A+ PH + + +++ ++G + ++ +++ LQ G + + P+ V
Sbjct: 346 RKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFV 400
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 34 ANSSNDAIDGNFFTFTGMRSIIEGDDPPIFR-----VSKASMAEFPALNGQSVSTAILQF 88
+ S + ID T +I + P I+ V+ A+ +FPAL+ +S
Sbjct: 286 SKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSL 345
Query: 89 PAGAINPPHTHPRSAELLFVVSGILEVGFIDTT-NKLYTQTLQIGDMFVFPKGLV 142
A+ PH + + +++ ++G + ++ +++ LQ G + + P+ V
Sbjct: 346 RKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFV 400
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,050,033
Number of Sequences: 62578
Number of extensions: 174528
Number of successful extensions: 442
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 36
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)