Query 041665
Match_columns 206
No_of_seqs 300 out of 1749
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:26:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 99.9 2.6E-26 5.6E-31 203.5 19.8 157 38-201 206-362 (367)
2 TIGR03404 bicupin_oxalic bicup 99.9 3.2E-23 7E-28 183.8 18.6 151 40-201 32-185 (367)
3 PLN00212 glutelin; Provisional 99.9 1.9E-22 4.1E-27 183.5 18.0 145 56-203 323-470 (493)
4 PF00190 Cupin_1: Cupin; Inte 99.9 4.6E-22 9.9E-27 154.9 10.4 127 58-196 10-144 (144)
5 smart00835 Cupin_1 Cupin. This 99.9 2.5E-20 5.4E-25 145.4 17.1 134 59-195 8-145 (146)
6 PLN00212 glutelin; Provisional 99.8 7.4E-18 1.6E-22 153.6 19.6 137 60-201 60-249 (493)
7 COG2140 Thermophilic glucose-6 99.8 2.9E-18 6.2E-23 139.5 13.1 151 42-203 49-201 (209)
8 PF07883 Cupin_2: Cupin domain 99.6 6.9E-15 1.5E-19 100.1 6.4 70 85-160 2-71 (71)
9 COG0662 {ManC} Mannose-6-phosp 99.5 2.7E-13 5.9E-18 103.5 11.9 83 78-166 33-115 (127)
10 COG1917 Uncharacterized conser 99.5 2.6E-13 5.6E-18 103.7 11.5 86 71-162 33-118 (131)
11 PRK13290 ectC L-ectoine syntha 99.5 2.9E-13 6.3E-18 103.2 11.3 80 79-167 33-114 (125)
12 PRK04190 glucose-6-phosphate i 99.4 8.4E-12 1.8E-16 101.6 13.5 88 75-163 62-157 (191)
13 COG4101 Predicted mannose-6-ph 99.3 1.1E-11 2.3E-16 92.3 9.7 85 79-166 44-128 (142)
14 PRK09943 DNA-binding transcrip 99.3 1.8E-11 4E-16 98.9 11.8 77 78-161 104-181 (185)
15 COG3837 Uncharacterized conser 99.3 9.5E-12 2.1E-16 96.8 9.5 92 72-171 35-129 (161)
16 PRK11171 hypothetical protein; 99.3 6.6E-11 1.4E-15 101.1 14.7 109 37-161 27-136 (266)
17 TIGR01479 GMP_PMI mannose-1-ph 99.3 2.3E-11 5E-16 111.4 12.3 79 79-163 374-452 (468)
18 PRK15460 cpsB mannose-1-phosph 99.3 2.8E-11 6.2E-16 110.9 12.1 80 78-163 382-461 (478)
19 PF01050 MannoseP_isomer: Mann 99.3 6E-11 1.3E-15 93.2 10.4 89 61-162 50-138 (151)
20 TIGR03214 ura-cupin putative a 99.2 2.5E-10 5.3E-15 97.3 11.7 77 79-161 56-133 (260)
21 TIGR03214 ura-cupin putative a 99.1 8.4E-10 1.8E-14 94.0 12.0 74 80-159 178-251 (260)
22 PRK11171 hypothetical protein; 99.1 5.1E-10 1.1E-14 95.6 10.6 75 79-160 182-257 (266)
23 PF02041 Auxin_BP: Auxin bindi 99.0 5.1E-09 1.1E-13 81.0 11.0 93 80-173 43-139 (167)
24 PRK13264 3-hydroxyanthranilate 98.9 8.2E-09 1.8E-13 82.6 9.1 64 86-151 39-102 (177)
25 TIGR03037 anthran_nbaC 3-hydro 98.9 1.3E-08 2.7E-13 80.3 9.6 61 89-151 36-96 (159)
26 PF06560 GPI: Glucose-6-phosph 98.7 1.4E-07 3E-12 76.2 10.9 87 76-163 45-147 (182)
27 PF02311 AraC_binding: AraC-li 98.7 1E-07 2.2E-12 71.0 8.1 64 90-160 12-75 (136)
28 PRK15457 ethanolamine utilizat 98.6 6.4E-07 1.4E-11 74.4 11.6 73 77-160 153-225 (233)
29 PF11699 CENP-C_C: Mif2/CENP-C 98.6 2.8E-07 6.1E-12 65.6 8.1 72 80-158 11-83 (85)
30 TIGR02451 anti_sig_ChrR anti-s 98.6 2E-07 4.4E-12 77.3 8.4 72 81-163 127-198 (215)
31 PRK10371 DNA-binding transcrip 98.6 1.9E-07 4.1E-12 81.0 8.2 62 84-151 29-90 (302)
32 PF03079 ARD: ARD/ARD' family; 98.6 5.5E-07 1.2E-11 71.2 10.0 66 94-161 85-150 (157)
33 PF12973 Cupin_7: ChrR Cupin-l 98.5 2.3E-07 4.9E-12 66.6 5.1 81 61-158 8-88 (91)
34 COG1791 Uncharacterized conser 98.5 1.7E-06 3.6E-11 68.5 9.6 69 95-166 89-157 (181)
35 PRK10296 DNA-binding transcrip 98.3 3.4E-06 7.4E-11 71.7 9.7 52 91-148 33-84 (278)
36 PRK13501 transcriptional activ 98.3 2.3E-06 5.1E-11 73.3 7.6 57 89-151 26-82 (290)
37 PF05523 FdtA: WxcM-like, C-te 98.3 1.6E-05 3.5E-10 61.0 11.3 96 61-163 14-112 (131)
38 PRK13500 transcriptional activ 98.3 3.9E-06 8.3E-11 73.0 8.3 57 89-151 56-112 (312)
39 TIGR02297 HpaA 4-hydroxyphenyl 98.2 5.7E-06 1.2E-10 70.5 7.2 56 91-151 33-88 (287)
40 PRK13502 transcriptional activ 98.2 8.3E-06 1.8E-10 69.4 8.0 58 88-151 25-82 (282)
41 PF06052 3-HAO: 3-hydroxyanthr 98.1 3.2E-05 6.9E-10 60.2 9.7 66 84-151 36-101 (151)
42 PF06339 Ectoine_synth: Ectoin 98.1 4.5E-05 9.7E-10 57.7 10.2 84 77-167 31-114 (126)
43 PRK13503 transcriptional activ 98.1 5.6E-06 1.2E-10 70.1 5.8 54 90-149 24-77 (278)
44 KOG2107 Uncharacterized conser 98.1 8.6E-06 1.9E-10 64.1 6.2 57 94-151 86-142 (179)
45 TIGR02272 gentisate_1_2 gentis 98.1 1E-05 2.2E-10 71.2 6.8 75 80-160 80-154 (335)
46 COG4297 Uncharacterized protei 98.0 1.8E-05 3.9E-10 60.6 7.1 67 91-161 52-119 (163)
47 COG3257 GlxB Uncharacterized p 98.0 5.9E-05 1.3E-09 62.2 9.6 75 81-161 61-136 (264)
48 PF05899 Cupin_3: Protein of u 98.0 2.3E-05 5E-10 54.2 5.8 60 81-147 7-66 (74)
49 COG3435 Gentisate 1,2-dioxygen 97.9 3.2E-05 7E-10 66.5 6.5 92 64-161 70-166 (351)
50 PF06249 EutQ: Ethanolamine ut 97.8 4.5E-05 9.8E-10 59.9 6.0 61 81-149 77-137 (152)
51 PF05995 CDO_I: Cysteine dioxy 97.8 0.00032 6.9E-09 56.4 11.0 84 80-164 74-166 (175)
52 TIGR02272 gentisate_1_2 gentis 97.8 0.00012 2.5E-09 64.6 8.4 66 85-159 254-319 (335)
53 COG4766 EutQ Ethanolamine util 97.7 0.00023 5E-09 55.5 8.6 65 77-149 96-160 (176)
54 PF14499 DUF4437: Domain of un 97.7 5.4E-05 1.2E-09 64.1 5.5 73 79-157 34-106 (251)
55 COG3435 Gentisate 1,2-dioxygen 97.4 0.00045 9.9E-09 59.5 6.7 66 86-159 266-331 (351)
56 COG3450 Predicted enzyme of th 97.3 0.0013 2.9E-08 49.3 7.2 62 80-148 44-105 (116)
57 COG1898 RfbC dTDP-4-dehydrorha 97.3 0.002 4.3E-08 51.7 8.6 68 90-158 54-130 (173)
58 TIGR01221 rmlC dTDP-4-dehydror 97.1 0.008 1.7E-07 48.4 10.8 78 89-167 52-139 (176)
59 PF00908 dTDP_sugar_isom: dTDP 97.0 0.0094 2E-07 48.0 10.0 79 88-167 50-139 (176)
60 PF13621 Cupin_8: Cupin-like d 96.5 0.011 2.5E-07 48.7 7.7 66 83-149 132-233 (251)
61 COG3806 ChrR Transcriptional a 96.4 0.0097 2.1E-07 48.5 6.3 74 79-163 126-199 (216)
62 PRK10572 DNA-binding transcrip 96.3 0.017 3.6E-07 49.3 7.3 50 96-151 44-93 (290)
63 PF04209 HgmA: homogentisate 1 96.2 0.018 4E-07 52.2 7.2 61 95-161 139-199 (424)
64 PF07385 DUF1498: Protein of u 96.1 0.032 6.9E-07 46.3 7.9 70 82-151 88-180 (225)
65 PF14499 DUF4437: Domain of un 96.1 0.0064 1.4E-07 51.6 3.8 76 80-161 170-245 (251)
66 PF02678 Pirin: Pirin; InterP 96.1 0.021 4.6E-07 42.3 6.1 62 91-157 39-103 (107)
67 PRK05341 homogentisate 1,2-dio 96.0 0.065 1.4E-06 48.8 10.0 58 95-159 147-204 (438)
68 TIGR01015 hmgA homogentisate 1 96.0 0.071 1.5E-06 48.4 10.0 61 95-161 141-201 (429)
69 COG3257 GlxB Uncharacterized p 95.9 0.036 7.9E-07 46.0 7.3 77 74-157 175-252 (264)
70 PF12852 Cupin_6: Cupin 95.9 0.02 4.2E-07 45.9 5.6 45 103-150 36-80 (186)
71 KOG3995 3-hydroxyanthranilate 95.8 0.025 5.4E-07 46.7 5.8 62 88-151 40-101 (279)
72 PF08007 Cupin_4: Cupin superf 95.8 0.084 1.8E-06 46.3 9.7 78 82-162 114-211 (319)
73 PF13759 2OG-FeII_Oxy_5: Putat 95.6 0.051 1.1E-06 39.3 6.3 73 84-157 3-98 (101)
74 PF07847 DUF1637: Protein of u 95.5 0.049 1.1E-06 44.8 6.7 88 74-163 37-144 (200)
75 PRK00924 5-keto-4-deoxyuronate 95.5 0.11 2.3E-06 44.8 8.9 83 79-164 173-261 (276)
76 PRK12335 tellurite resistance 95.5 0.076 1.6E-06 45.6 8.0 63 89-151 19-84 (287)
77 PLN02658 homogentisate 1,2-dio 95.5 0.14 3E-06 46.6 9.9 56 96-158 141-196 (435)
78 COG3822 ABC-type sugar transpo 95.4 0.14 2.9E-06 41.7 8.5 71 81-151 86-179 (225)
79 PRK09685 DNA-binding transcrip 95.4 0.11 2.3E-06 44.5 8.6 66 81-151 45-115 (302)
80 COG1741 Pirin-related protein 95.3 0.067 1.5E-06 46.1 7.1 60 85-148 48-109 (276)
81 TIGR02466 conserved hypothetic 95.0 0.13 2.9E-06 42.3 7.9 65 82-151 97-189 (201)
82 PF09313 DUF1971: Domain of un 94.9 0.33 7.1E-06 34.2 8.5 51 101-151 24-76 (82)
83 COG3508 HmgA Homogentisate 1,2 94.9 0.39 8.5E-06 42.6 10.6 74 79-159 123-196 (427)
84 PF05118 Asp_Arg_Hydrox: Aspar 94.5 0.12 2.5E-06 41.0 6.0 71 82-158 81-156 (163)
85 PF02373 JmjC: JmjC domain, hy 94.4 0.083 1.8E-06 38.4 4.7 29 123-151 79-107 (114)
86 COG5553 Predicted metal-depend 93.7 0.34 7.3E-06 38.5 7.0 77 81-160 73-155 (191)
87 PF14525 AraC_binding_2: AraC- 93.6 0.67 1.4E-05 35.5 8.7 66 81-151 34-99 (172)
88 PRK15131 mannose-6-phosphate i 93.5 0.5 1.1E-05 42.7 8.8 59 80-146 320-378 (389)
89 PF05726 Pirin_C: Pirin C-term 93.2 0.34 7.4E-06 35.3 6.1 67 84-159 2-68 (104)
90 PF06865 DUF1255: Protein of u 93.2 0.95 2E-05 32.7 8.1 57 86-148 28-84 (94)
91 PRK10579 hypothetical protein; 92.5 1.3 2.8E-05 32.1 8.0 55 88-148 30-84 (94)
92 KOG2757 Mannose-6-phosphate is 92.4 0.69 1.5E-05 41.3 7.8 74 80-160 332-405 (411)
93 TIGR00218 manA mannose-6-phosp 92.3 1.2 2.5E-05 38.7 9.1 61 78-146 232-292 (302)
94 PLN02288 mannose-6-phosphate i 92.2 0.44 9.5E-06 43.2 6.6 59 79-141 332-390 (394)
95 PF06172 Cupin_5: Cupin superf 91.9 3.6 7.8E-05 31.8 10.5 77 81-159 41-124 (139)
96 KOG3706 Uncharacterized conser 91.9 0.11 2.3E-06 47.9 2.2 60 89-149 325-405 (629)
97 COG2850 Uncharacterized conser 90.3 0.72 1.6E-05 41.2 5.8 64 87-151 125-205 (383)
98 PF04962 KduI: KduI/IolB famil 89.5 7.2 0.00016 33.3 11.2 96 64-164 136-247 (261)
99 PF11142 DUF2917: Protein of u 89.4 2.1 4.5E-05 28.5 6.3 57 86-147 2-58 (63)
100 PRK11753 DNA-binding transcrip 89.1 4 8.7E-05 32.6 9.1 53 84-137 21-74 (211)
101 PRK09391 fixK transcriptional 89.0 4.2 9.1E-05 33.5 9.3 77 80-158 35-112 (230)
102 COG1482 ManA Phosphomannose is 89.0 2.7 5.8E-05 36.9 8.4 58 79-144 240-297 (312)
103 PF00027 cNMP_binding: Cyclic 86.9 2 4.3E-05 28.9 5.2 47 87-135 3-51 (91)
104 PHA02984 hypothetical protein; 85.6 5.4 0.00012 34.2 7.9 60 103-165 92-154 (286)
105 PRK13918 CRP/FNR family transc 84.7 4.9 0.00011 31.9 7.2 54 85-138 8-63 (202)
106 COG3123 Uncharacterized protei 84.4 4.3 9.3E-05 28.8 5.7 44 101-147 40-83 (94)
107 PRK00924 5-keto-4-deoxyuronate 84.2 6.9 0.00015 33.8 8.2 52 103-160 74-128 (276)
108 PF04962 KduI: KduI/IolB famil 83.6 3.6 7.8E-05 35.2 6.2 65 82-151 28-100 (261)
109 cd00038 CAP_ED effector domain 81.1 6.7 0.00015 26.9 6.0 53 84-137 18-71 (115)
110 PHA02890 hypothetical protein; 81.0 14 0.00031 31.5 8.6 44 103-147 91-136 (278)
111 PRK10202 ebgC cryptic beta-D-g 80.8 18 0.00039 28.1 8.8 52 95-146 58-127 (149)
112 KOG2130 Phosphatidylserine-spe 80.7 2.8 6.1E-05 36.9 4.5 45 122-167 260-304 (407)
113 smart00100 cNMP Cyclic nucleot 80.5 11 0.00023 25.9 7.0 53 84-137 18-71 (120)
114 PRK15186 AraC family transcrip 79.1 7 0.00015 33.9 6.6 45 103-151 39-83 (291)
115 PLN02868 acyl-CoA thioesterase 79.0 7.9 0.00017 35.0 7.1 53 84-137 32-84 (413)
116 PRK03606 ureidoglycolate hydro 78.9 15 0.00033 29.2 7.8 64 95-159 72-140 (162)
117 PRK10402 DNA-binding transcrip 75.8 9.6 0.00021 31.1 6.2 52 85-137 33-85 (226)
118 PF04115 Ureidogly_hydro: Urei 75.2 17 0.00038 28.7 7.3 64 96-160 74-144 (165)
119 KOG2131 Uncharacterized conser 74.5 3.8 8.3E-05 36.7 3.6 60 90-151 207-294 (427)
120 COG3718 IolB Uncharacterized e 74.4 27 0.00059 29.6 8.4 85 63-151 14-103 (270)
121 PHA00672 hypothetical protein 74.4 25 0.00054 27.0 7.5 66 79-151 45-110 (152)
122 COG2731 EbgC Beta-galactosidas 74.1 19 0.0004 28.4 7.1 57 94-150 61-137 (154)
123 KOG1417 Homogentisate 1,2-diox 72.8 43 0.00092 29.5 9.5 62 95-162 148-209 (446)
124 TIGR00022 uncharacterized prot 72.3 23 0.0005 27.1 7.3 26 93-118 60-85 (142)
125 TIGR00218 manA mannose-6-phosp 71.7 2.2 4.8E-05 37.0 1.5 20 126-145 152-171 (302)
126 COG1482 ManA Phosphomannose is 71.6 3.6 7.8E-05 36.1 2.8 23 125-147 158-180 (312)
127 PF07172 GRP: Glycine rich pro 70.1 4.7 0.0001 29.1 2.7 13 1-13 1-13 (95)
128 PRK11161 fumarate/nitrate redu 69.9 40 0.00087 27.3 8.7 50 87-137 41-91 (235)
129 COG3717 KduI 5-keto 4-deoxyuro 69.5 27 0.00058 29.6 7.3 87 76-165 172-264 (278)
130 PRK15131 mannose-6-phosphate i 68.9 4.7 0.0001 36.5 3.0 23 125-147 237-259 (389)
131 COG0664 Crp cAMP-binding prote 67.0 25 0.00054 27.3 6.7 56 83-139 23-79 (214)
132 PF04074 DUF386: Domain of unk 66.5 35 0.00075 26.4 7.2 54 93-146 60-134 (153)
133 KOG4281 Uncharacterized conser 65.4 3.4 7.4E-05 34.3 1.3 41 78-118 72-112 (236)
134 COG3615 TehB Uncharacterized p 64.8 38 0.00082 24.6 6.4 49 103-151 37-87 (99)
135 PF13640 2OG-FeII_Oxy_3: 2OG-F 62.9 17 0.00037 25.4 4.5 60 87-148 5-86 (100)
136 PRK09392 ftrB transcriptional 62.5 35 0.00077 27.7 6.9 51 85-136 32-82 (236)
137 TIGR03697 NtcA_cyano global ni 62.2 19 0.00042 28.1 5.1 35 102-136 11-46 (193)
138 PF06719 AraC_N: AraC-type tra 61.2 20 0.00042 27.9 4.9 51 103-159 24-77 (155)
139 PRK13395 ureidoglycolate hydro 53.0 90 0.002 25.0 7.4 65 95-160 72-142 (171)
140 KOG1356 Putative transcription 51.7 2.6 5.7E-05 41.4 -1.8 59 88-151 762-825 (889)
141 PF04622 ERG2_Sigma1R: ERG2 an 51.1 85 0.0018 26.1 7.3 93 92-194 112-206 (216)
142 PLN02288 mannose-6-phosphate i 48.6 14 0.00031 33.5 2.5 22 126-147 252-273 (394)
143 PF05962 HutD: HutD; InterPro 48.2 21 0.00045 28.8 3.2 34 101-139 134-167 (184)
144 PF14801 GCD14_N: tRNA methylt 47.5 47 0.001 21.5 4.0 31 114-144 11-41 (54)
145 PLN03192 Voltage-dependent pot 45.8 48 0.001 32.8 5.9 52 83-135 397-448 (823)
146 PF13348 Y_phosphatase3C: Tyro 44.4 22 0.00047 23.4 2.3 25 178-202 43-67 (68)
147 KOG0498 K+-channel ERG and rel 44.1 43 0.00093 32.9 5.1 48 87-135 446-493 (727)
148 KOG1633 F-box protein JEMMA an 42.3 38 0.00082 33.6 4.4 78 84-163 139-233 (776)
149 KOG3416 Predicted nucleic acid 40.9 1.2E+02 0.0025 23.3 5.9 66 73-147 11-80 (134)
150 TIGR02408 ectoine_ThpD ectoine 40.7 35 0.00075 29.1 3.6 39 126-164 212-251 (277)
151 KOG2132 Uncharacterized conser 40.5 12 0.00026 33.2 0.7 79 70-149 239-350 (355)
152 PRK02290 3-dehydroquinate synt 39.9 88 0.0019 27.9 6.0 84 61-148 251-337 (344)
153 PF02787 CPSase_L_D3: Carbamoy 39.5 31 0.00067 26.0 2.8 26 178-203 72-97 (123)
154 KOG0500 Cyclic nucleotide-gate 39.0 64 0.0014 30.3 5.1 51 82-135 329-379 (536)
155 KOG4064 Cysteine dioxygenase C 38.3 66 0.0014 25.5 4.4 81 81-161 72-160 (196)
156 COG1741 Pirin-related protein 37.6 2.7E+02 0.0058 24.0 12.4 41 73-115 166-206 (276)
157 PF05721 PhyH: Phytanoyl-CoA d 36.2 58 0.0013 25.1 4.0 29 123-151 178-207 (211)
158 KOG0501 K+-channel KCNQ [Inorg 35.9 54 0.0012 31.7 4.2 49 82-135 570-618 (971)
159 PRK05467 Fe(II)-dependent oxyg 35.2 1.2E+02 0.0026 25.3 5.9 26 126-151 142-167 (226)
160 PF13994 PgaD: PgaD-like prote 35.0 45 0.00098 25.4 3.1 23 179-201 101-123 (138)
161 PF02796 HTH_7: Helix-turn-hel 34.2 53 0.0012 19.8 2.8 28 173-200 16-43 (45)
162 PRK14585 pgaD putative PGA bio 33.3 50 0.0011 25.5 3.0 25 177-201 88-112 (137)
163 PHA02699 hypothetical protein; 30.9 3.1E+02 0.0067 25.0 7.8 75 83-159 145-223 (466)
164 smart00153 VHP Villin headpiec 29.9 57 0.0012 19.1 2.2 21 179-199 2-22 (36)
165 COG3417 FlgN Collagen-binding 29.4 91 0.002 25.6 4.0 33 1-33 1-33 (200)
166 PF01959 DHQS: 3-dehydroquinat 28.9 1.6E+02 0.0035 26.4 5.9 84 61-148 261-347 (354)
167 PF13384 HTH_23: Homeodomain-l 28.8 71 0.0015 19.2 2.7 26 178-203 17-42 (50)
168 PF02209 VHP: Villin headpiece 28.8 57 0.0012 19.2 2.1 21 179-199 2-22 (36)
169 PRK14584 hmsS hemin storage sy 28.1 72 0.0016 25.1 3.2 24 178-201 98-121 (153)
170 PF02950 Conotoxin: Conotoxin; 28.0 20 0.00043 24.0 0.0 12 1-12 1-12 (75)
171 PF01238 PMI_typeI: Phosphoman 27.7 37 0.00079 30.5 1.7 22 126-147 251-272 (373)
172 PF12244 DUF3606: Protein of u 24.0 96 0.0021 20.0 2.7 25 181-205 23-47 (57)
173 PF12937 F-box-like: F-box-lik 23.4 1.1E+02 0.0023 18.2 2.8 21 178-198 3-24 (47)
174 PRK11396 hypothetical protein; 22.6 4.3E+02 0.0093 21.6 10.4 66 78-149 33-99 (191)
175 PF01987 AIM24: Mitochondrial 22.4 1.7E+02 0.0036 23.6 4.5 44 103-147 130-173 (215)
176 PF10880 DUF2673: Protein of u 22.0 99 0.0021 20.2 2.4 19 5-23 3-21 (65)
177 PF00325 Crp: Bacterial regula 20.8 1.3E+02 0.0028 17.1 2.5 25 179-203 3-27 (32)
178 PHA02095 hypothetical protein 20.6 1.5E+02 0.0033 20.3 3.2 23 97-119 19-41 (84)
179 COG3717 KduI 5-keto 4-deoxyuro 20.4 3.1E+02 0.0068 23.4 5.7 53 101-159 74-129 (278)
180 PRK11443 lipoprotein; Provisio 20.4 1.1E+02 0.0023 23.2 2.7 22 12-33 8-29 (124)
181 PF09716 ETRAMP: Malarial earl 20.2 91 0.002 21.8 2.2 15 1-15 1-15 (84)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.95 E-value=2.6e-26 Score=203.49 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=140.2
Q ss_pred CCCcCCCCceEeccccccCCCCCCceEEEEeeccccCCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEE
Q 041665 38 NDAIDGNFFTFTGMRSIIEGDDPPIFRVSKASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGF 117 (206)
Q Consensus 38 p~~~~~~dF~~~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~ 117 (206)
|..-.++.|.|+....++ ....||+++.++..+||++++ +++++++++||+..++|||++++|++||++|++++++
T Consensus 206 ~~~~~~~~~~~~~~~~~p--~~~~gG~~~~~~~~~~p~~~~--~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v 281 (367)
T TIGR03404 206 PAGEVPGPFTYHLSEQKP--KQVPGGTVRIADSTNFPVSKT--IAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTV 281 (367)
T ss_pred CCCCCCccEEEEhhhCCc--eecCCceEEEEChhhccCcce--EEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEE
Confidence 445556668888866554 245689999999999998875 7999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEecCCCcceeeechhhhcCCCCHHHHHHHcCCCHHHHHH
Q 041665 118 IDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAFGSASAGTVSVPTTVFATGIDENILAKAFKTDVTTIQK 197 (206)
Q Consensus 118 ~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~~s~~pg~~~~~~~~f~~~~p~~vla~~f~~~~~~v~~ 197 (206)
.+.+|+.+++.+++||+++||+|..|+++|.|++ +++++++|++..++.+.+++++ +.+|++|++++|+++.+.+++
T Consensus 282 ~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e-~l~fL~if~s~~~~~i~l~~~l--~~~p~~vl~~~~~~~~~~~~~ 358 (367)
T TIGR03404 282 FAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDE-TLVFLEVFKADRFADVSLNQWL--ALTPPQLVAAHLNLDDEVIDS 358 (367)
T ss_pred EecCCcEEEEEECCCCEEEECCCCeEEEEECCCC-CEEEEEEECCCCCceeEHHHHH--hhCCHHHHHHHhCcCHHHHHh
Confidence 8877776789999999999999999999999999 9999999999999999988876 359999999999999999999
Q ss_pred HHhh
Q 041665 198 IKAG 201 (206)
Q Consensus 198 l~~~ 201 (206)
|++.
T Consensus 359 l~~~ 362 (367)
T TIGR03404 359 LKKE 362 (367)
T ss_pred cccc
Confidence 9975
No 2
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.91 E-value=3.2e-23 Score=183.77 Aligned_cols=151 Identities=19% Similarity=0.313 Sum_probs=127.0
Q ss_pred CcCCCCceEeccccccCCCCCCceEEEEeeccccCCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEe
Q 041665 40 AIDGNFFTFTGMRSIIEGDDPPIFRVSKASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFID 119 (206)
Q Consensus 40 ~~~~~dF~~~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~ 119 (206)
.+....|.|+.-.+. ...||+++.++..+||++++ +++.++++.||+..++|||. +.|++||++|++++++.+
T Consensus 32 ~~p~~~~~~~~~~~~----~~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d 104 (367)
T TIGR03404 32 SVPNLKWSFSDSHNR----LENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVD 104 (367)
T ss_pred ccccceeeeccccCc----cccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEc
Confidence 444444666653322 23588999999999999987 59999999999999999995 589999999999999998
Q ss_pred CCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEecCCC---cceeeechhhhcCCCCHHHHHHHcCCCHHHHH
Q 041665 120 TTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAFGSAS---AGTVSVPTTVFATGIDENILAKAFKTDVTTIQ 196 (206)
Q Consensus 120 ~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~~s~~---pg~~~~~~~~f~~~~p~~vla~~f~~~~~~v~ 196 (206)
++|+.+.+.|++||+++||+|.+|+++|.+ + .+.++.+|++.. +..+.+.++ |+ .+|++||+++|+++.++++
T Consensus 105 ~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~-~-~~~~l~vf~~~~f~~~~~~~~~~~-l~-~~p~~Vla~~f~l~~~~~~ 180 (367)
T TIGR03404 105 ENGRNYIDDVGAGDLWYFPPGIPHSLQGLD-E-GCEFLLVFDDGNFSEDGTFLVTDW-LA-HTPKDVLAKNFGVPESAFD 180 (367)
T ss_pred CCCcEEEeEECCCCEEEECCCCeEEEEECC-C-CeEEEEEeCCcccCCcceeeHHHH-HH-hCCHHHHHHHhCCCHHHHH
Confidence 878877778999999999999999999985 5 578888887764 556667676 45 5999999999999999999
Q ss_pred HHHhh
Q 041665 197 KIKAG 201 (206)
Q Consensus 197 ~l~~~ 201 (206)
+|++.
T Consensus 181 ~l~~~ 185 (367)
T TIGR03404 181 NLPLK 185 (367)
T ss_pred hcccc
Confidence 99875
No 3
>PLN00212 glutelin; Provisional
Probab=99.90 E-value=1.9e-22 Score=183.49 Aligned_cols=145 Identities=14% Similarity=0.307 Sum_probs=125.8
Q ss_pred CCCCCCceEEEEeeccccCCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCC-cEEEEEEcCCCE
Q 041665 56 EGDDPPIFRVSKASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTN-KLYTQTLQIGDM 134 (206)
Q Consensus 56 ~~~~~~g~~v~~~~~~~~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~-~~~~~~L~~GD~ 134 (206)
++.++.+|+++.+++.+||+|+.+++++.+++|.||++.+||||+++.|++||++|++++++++.+| +++...|++||+
T Consensus 323 d~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gdv 402 (493)
T PLN00212 323 DTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQL 402 (493)
T ss_pred CccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCE
Confidence 4568889999999999999999999999999999999999999999999999999999999998875 688899999999
Q ss_pred EEECCCCeEEEEeCCCCccEEEEEEecCCCcceeeec--hhhhcCCCCHHHHHHHcCCCHHHHHHHHhhcC
Q 041665 135 FVFPKGLVHYQYNSKANQPAAAISAFGSASAGTVSVP--TTVFATGIDENILAKAFKTDVTTIQKIKAGLA 203 (206)
Q Consensus 135 ~~~P~g~~H~~~N~g~~~~a~~i~~~~s~~pg~~~~~--~~~f~~~~p~~vla~~f~~~~~~v~~l~~~~~ 203 (206)
++||+|.+|..... ++ ...+++..++.++-...++ .++|+ .||.+|++++|+++++++++||.++.
T Consensus 403 fVVPqg~~v~~~A~-~e-gfe~v~F~tna~~~~s~laG~~Sv~~-alp~eVla~Af~is~eea~~lk~n~~ 470 (493)
T PLN00212 403 LIIPQHYAVLKKAE-RE-GCQYIAFKTNANAMVSHIAGKNSIFR-ALPVDVIANAYRISREEARRLKNNRG 470 (493)
T ss_pred EEECCCCeEEEeec-CC-ceEEEEeecCCCccccccccHHHHHH-hCCHHHHHHHcCCCHHHHHHHHhccc
Confidence 99999999987764 44 4666665555554333333 56787 69999999999999999999998864
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.87 E-value=4.6e-22 Score=154.87 Aligned_cols=127 Identities=27% Similarity=0.458 Sum_probs=107.0
Q ss_pred CCCCceEEEEeeccccCCCCCC-eEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCC-----cEEEEE--E
Q 041665 58 DDPPIFRVSKASMAEFPALNGQ-SVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTN-----KLYTQT--L 129 (206)
Q Consensus 58 ~~~~g~~v~~~~~~~~P~l~~~-gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~-----~~~~~~--L 129 (206)
....+|+++.++..++|.+.+. ++.+.+..+.||++..|||| ++.|+.||++|++++++..+++ +..... +
T Consensus 10 ~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l 88 (144)
T PF00190_consen 10 VSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRL 88 (144)
T ss_dssp EEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEE
T ss_pred ccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeee
Confidence 3456889999999999954443 45677777899999999999 8999999999999999998765 344555 9
Q ss_pred cCCCEEEECCCCeEEEEeCCCCccEEEEEEecCCCcceeeechhhhcCCCCHHHHHHHcCCCHHHHH
Q 041665 130 QIGDMFVFPKGLVHYQYNSKANQPAAAISAFGSASAGTVSVPTTVFATGIDENILAKAFKTDVTTIQ 196 (206)
Q Consensus 130 ~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~~s~~pg~~~~~~~~f~~~~p~~vla~~f~~~~~~v~ 196 (206)
++||++++|+|.+||+.|.+++ +...+.++.+.+|..+ +|+++++++|+++.++++
T Consensus 89 ~~Gdv~~vP~G~~h~~~n~~~~-~~~~~~~f~~~~~~~~----------l~~~v~~~~F~~~~~~~~ 144 (144)
T PF00190_consen 89 KAGDVFVVPAGHPHWIINDGDD-EALVLIIFDTNNPPNQ----------LPPEVLAKAFFLSGEEVQ 144 (144)
T ss_dssp ETTEEEEE-TT-EEEEEECSSS-SEEEEEEEEESSTTGE----------SSHHHHHHHEESSHHHHB
T ss_pred ecccceeeccceeEEEEcCCCC-CCEEEEEEECCCCccc----------CCcHHHHHhcCCCcCcCC
Confidence 9999999999999999999988 8888888888877654 999999999999998764
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.86 E-value=2.5e-20 Score=145.41 Aligned_cols=134 Identities=35% Similarity=0.589 Sum_probs=115.6
Q ss_pred CCCceEEEEeeccccCCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCC-cEEEEEEcCCCEEEE
Q 041665 59 DPPIFRVSKASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTN-KLYTQTLQIGDMFVF 137 (206)
Q Consensus 59 ~~~g~~v~~~~~~~~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~-~~~~~~L~~GD~~~~ 137 (206)
+..||+++.++...+|.+++.++.+.+++++||+..++|+|+...|++||++|++++.+.++.+ +...+.+++||++++
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i 87 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV 87 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE
Confidence 4568889999999999999999999999999999999999987799999999999999887643 556899999999999
Q ss_pred CCCCeEEEEeCCCCccEEEEEEecCCCcceeeec---hhhhcCCCCHHHHHHHcCCCHHHH
Q 041665 138 PKGLVHYQYNSKANQPAAAISAFGSASAGTVSVP---TTVFATGIDENILAKAFKTDVTTI 195 (206)
Q Consensus 138 P~g~~H~~~N~g~~~~a~~i~~~~s~~pg~~~~~---~~~f~~~~p~~vla~~f~~~~~~v 195 (206)
|+|..|++.|.+++ +++++ ++.+++|...... .++|. ++++++++++|+++++++
T Consensus 88 p~g~~H~~~n~~~~-~~~~l-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 88 PQGHPHFQVNSGDE-NLEFV-AFNTNDPNRRFFLAGRNSVLR-GLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred CCCCEEEEEcCCCC-CEEEE-EEecCCCCceeEeecccchhh-cCCHHHHHHHhCcChHHc
Confidence 99999999999998 99888 4666776543221 35565 799999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.79 E-value=7.4e-18 Score=153.56 Aligned_cols=137 Identities=13% Similarity=0.269 Sum_probs=113.5
Q ss_pred CCceEEEEeeccccCCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcE---------------
Q 041665 60 PPIFRVSKASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKL--------------- 124 (206)
Q Consensus 60 ~~g~~v~~~~~~~~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~--------------- 124 (206)
.-+|.+..++ .+-+.+...|+++.+.++.|++...||+| ++.+++||++|++.+++..+ |..
T Consensus 60 se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~p-GcpeT~~~~~~~~~~~~~ 136 (493)
T PLN00212 60 SEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFP-GCPATYQQQFQQFLTEGQ 136 (493)
T ss_pred ccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeC-CCcchhhhhccccccccc
Confidence 3466666666 55689999999999999999999999999 78999999999999999863 211
Q ss_pred -----------EEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEecCCCcc--------eeeec--------------
Q 041665 125 -----------YTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAFGSASAG--------TVSVP-------------- 171 (206)
Q Consensus 125 -----------~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~~s~~pg--------~~~~~-------------- 171 (206)
..+.+++||++.||+|++||+.|.|++ +++.+.+++..++. .+.++
T Consensus 137 ~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~-~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~ 215 (493)
T PLN00212 137 SQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDA-PVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSI 215 (493)
T ss_pred ccccccccccccceEeccCCEEEECCCCeEEEEeCCCC-cEEEEEEEeccccccccCCCcceeeccCCCccccccccccc
Confidence 136999999999999999999999999 99888888665532 23333
Q ss_pred -----hhhhcCCCCHHHHHHHcCCCHHHHHHHHhh
Q 041665 172 -----TTVFATGIDENILAKAFKTDVTTIQKIKAG 201 (206)
Q Consensus 172 -----~~~f~~~~p~~vla~~f~~~~~~v~~l~~~ 201 (206)
.++|. ++.+++|+.||+++.++++||+.+
T Consensus 216 ~~~~~~nifs-GF~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 216 EQHSGQNIFS-GFSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred cccccCchhh-cCCHHHHHHHHCCCHHHHHHHhcc
Confidence 23775 899999999999999999999854
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.78 E-value=2.9e-18 Score=139.46 Aligned_cols=151 Identities=15% Similarity=0.224 Sum_probs=132.2
Q ss_pred CCCCceEeccccccCCCCCCceEEEEeeccccCCCCCCeEEEEEEEecCCCcCCCccCCCCcE--EEEEEeeEEEEEEEe
Q 041665 42 DGNFFTFTGMRSIIEGDDPPIFRVSKASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAE--LLFVVSGILEVGFID 119 (206)
Q Consensus 42 ~~~dF~~~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E--~~yVl~G~~~~~~~~ 119 (206)
..++|+|..+..... ..++.+.......+|+- .-..+.+.||++...||||.++| +.||++|++++.+..
T Consensus 49 ~~~~~~yel~~~~~~---~~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPG---ERGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeeccccc---ccCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 678899988765432 23899999999999986 45677899999999999999999 999999999999999
Q ss_pred CCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEecCCCcceeeechhhhcCCCCHHHHHHHcCCCHHHHHHHH
Q 041665 120 TTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAFGSASAGTVSVPTTVFATGIDENILAKAFKTDVTTIQKIK 199 (206)
Q Consensus 120 ~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~~s~~pg~~~~~~~~f~~~~p~~vla~~f~~~~~~v~~l~ 199 (206)
.+|+..+..+++||+++||++..|+..|+|++ +.+++.++....+....+..+++ .++..+++..++.+.+..+..+
T Consensus 121 ~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~-pLvf~~v~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~D~p~ 197 (209)
T COG2140 121 PEGEARVIAVRAGDVIYVPPGYGHYTINTGDE-PLVFLNVYPADAGQDYDLIAWLG--GMPPVLVENGLNKNPKYVDVPR 197 (209)
T ss_pred CCCcEEEEEecCCcEEEeCCCcceEeecCCCC-CEEEEEEEeCCCCceeeeeehhc--cCCceeeccccccCcccccCcc
Confidence 98999999999999999999999999999999 99999999988888877776665 4999999999999988888777
Q ss_pred hhcC
Q 041665 200 AGLA 203 (206)
Q Consensus 200 ~~~~ 203 (206)
.++.
T Consensus 198 ~~~~ 201 (209)
T COG2140 198 IKFA 201 (209)
T ss_pred cccc
Confidence 6665
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.56 E-value=6.9e-15 Score=100.09 Aligned_cols=70 Identities=29% Similarity=0.534 Sum_probs=63.9
Q ss_pred EEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEe
Q 041665 85 ILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAF 160 (206)
Q Consensus 85 ~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~ 160 (206)
+++++||+..++|+|+...|++||++|++++.+.++ .+.+++||.+++|++..|++.|.+++ ++++++++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~i~~~~~H~~~n~~~~-~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE-----RVELKPGDAIYIPPGVPHQVRNPGDE-PARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEETTE-----EEEEETTEEEEEETTSEEEEEEESSS-EEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEccE-----EeEccCCEEEEECCCCeEEEEECCCC-CEEEEEEC
Confidence 578999999999999885599999999999986544 89999999999999999999999999 99999875
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=2.7e-13 Score=103.51 Aligned_cols=83 Identities=23% Similarity=0.270 Sum_probs=75.0
Q ss_pred CCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEE
Q 041665 78 GQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAI 157 (206)
Q Consensus 78 ~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i 157 (206)
+...++.++.+.||+...+|.|.+.+|++||++|++.+.++++ ...|++||++++|+|..|+++|.|.. +.+++
T Consensus 33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~-----~~~v~~gd~~~iP~g~~H~~~N~G~~-~L~li 106 (127)
T COG0662 33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGE-----EVEVKAGDSVYIPAGTPHRVRNTGKI-PLVLI 106 (127)
T ss_pred CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCc-ceEEE
Confidence 3567999999999999888888888999999999999999876 89999999999999999999999999 99999
Q ss_pred EEecCCCcc
Q 041665 158 SAFGSASAG 166 (206)
Q Consensus 158 ~~~~s~~pg 166 (206)
.+......+
T Consensus 107 ei~~p~~~~ 115 (127)
T COG0662 107 EVQSPPYLG 115 (127)
T ss_pred EEecCCcCC
Confidence 987666544
No 10
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.51 E-value=2.6e-13 Score=103.73 Aligned_cols=86 Identities=27% Similarity=0.496 Sum_probs=74.8
Q ss_pred cccCCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCC
Q 041665 71 AEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKA 150 (206)
Q Consensus 71 ~~~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~ 150 (206)
...+...+..+.+..+.++||+..++|+||...+.+||++|++++++.++ .+.+++||++++|+|..|+..|.++
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~-----~~~l~~Gd~i~ip~g~~H~~~a~~~ 107 (131)
T COG1917 33 RVLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGE-----KKELKAGDVIIIPPGVVHGLKAVED 107 (131)
T ss_pred eeccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCC-----ceEecCCCEEEECCCCeeeeccCCC
Confidence 34455556778999999999999999999855899999999999998865 8999999999999999999999999
Q ss_pred CccEEEEEEecC
Q 041665 151 NQPAAAISAFGS 162 (206)
Q Consensus 151 ~~~a~~i~~~~s 162 (206)
. ....++++..
T Consensus 108 ~-~~~~l~v~~~ 118 (131)
T COG1917 108 E-PMVLLLVFPL 118 (131)
T ss_pred C-ceeEEEEeee
Confidence 8 7667766654
No 11
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.50 E-value=2.9e-13 Score=103.21 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=71.1
Q ss_pred CeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEE-EE-eCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEE
Q 041665 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVG-FI-DTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAA 156 (206)
Q Consensus 79 ~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~-~~-~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~ 156 (206)
.++++.+++++||+..+.|+|.. .|++||++|++++. +. ++ ++.|++||++++|++.+|+++|. + ++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~~~~H~~~N~--e-~~~~ 103 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDKHDRHYLRAG--E-DMRL 103 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECCCCcEEEEcC--C-CEEE
Confidence 46789999999999989999976 79999999999998 64 55 89999999999999999999997 6 8999
Q ss_pred EEEecCCCcce
Q 041665 157 ISAFGSASAGT 167 (206)
Q Consensus 157 i~~~~s~~pg~ 167 (206)
+++++...+|.
T Consensus 104 l~v~tP~~~~~ 114 (125)
T PRK13290 104 VCVFNPPLTGR 114 (125)
T ss_pred EEEECCCCCCc
Confidence 99998766664
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.39 E-value=8.4e-12 Score=101.58 Aligned_cols=88 Identities=14% Similarity=0.211 Sum_probs=76.7
Q ss_pred CCCCCeEEEEEEEecCCCc------CCCccCCCC--cEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEE
Q 041665 75 ALNGQSVSTAILQFPAGAI------NPPHTHPRS--AELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQY 146 (206)
Q Consensus 75 ~l~~~gi~~~~~~l~pg~~------~~~H~H~~a--~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~ 146 (206)
..+..++.+....++||.. .+.|+|+.. .|+.||++|+..+.+.+.+|......+++||+++||+|..|+..
T Consensus 62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~i 141 (191)
T PRK04190 62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSV 141 (191)
T ss_pred CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeE
Confidence 3555678999999999996 467999744 59999999999999988777666899999999999999999999
Q ss_pred eCCCCccEEEEEEecCC
Q 041665 147 NSKANQPAAAISAFGSA 163 (206)
Q Consensus 147 N~g~~~~a~~i~~~~s~ 163 (206)
|.|++ ++++++++...
T Consensus 142 N~G~e-pl~fl~v~p~~ 157 (191)
T PRK04190 142 NTGDE-PLVFLACYPAD 157 (191)
T ss_pred ECCCC-CEEEEEEEcCC
Confidence 99999 99999988655
No 13
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.1e-11 Score=92.28 Aligned_cols=85 Identities=21% Similarity=0.349 Sum_probs=75.7
Q ss_pred CeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEE
Q 041665 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAIS 158 (206)
Q Consensus 79 ~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~ 158 (206)
.++.+..++++||+....|.|.+.+-.+||++|+...++++. -.+..++++||++|||+|++|...|.+++ ++.++.
T Consensus 44 s~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r--LE~ha~~~pGDf~YiPpgVPHqp~N~S~e-p~s~vI 120 (142)
T COG4101 44 SGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR--LEEHAEVGPGDFFYIPPGVPHQPANLSTE-PLSAVI 120 (142)
T ss_pred ceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc--eeeeEEecCCCeEEcCCCCCCcccccCCC-CeEEEE
Confidence 357889999999999999999998999999999999998754 23578999999999999999999999999 999998
Q ss_pred EecCCCcc
Q 041665 159 AFGSASAG 166 (206)
Q Consensus 159 ~~~s~~pg 166 (206)
+.+..+|.
T Consensus 121 aRsDp~~~ 128 (142)
T COG4101 121 ARSDPNPQ 128 (142)
T ss_pred EccCCCCC
Confidence 88877664
No 14
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.33 E-value=1.8e-11 Score=98.90 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=67.2
Q ss_pred CCeEEEEEEEecCCCcC-CCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEE
Q 041665 78 GQSVSTAILQFPAGAIN-PPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAA 156 (206)
Q Consensus 78 ~~gi~~~~~~l~pg~~~-~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~ 156 (206)
...+.+....++||+.. +.|+|+. .|++||++|++++.++++ .+.|++||.++||++.+|.+.|.+++ ++++
T Consensus 104 ~~~~~~~~~~~~pg~~~~~~~~h~~-~E~~~Vl~G~~~~~~~~~-----~~~l~~Gd~~~~~~~~~H~~~n~~~~-~~~~ 176 (185)
T PRK09943 104 NRTLAMIFETYQPGTTTGERIKHQG-EEIGTVLEGEIVLTINGQ-----DYHLVAGQSYAINTGIPHSFSNTSAG-ICRI 176 (185)
T ss_pred CCeeEEEEEEccCCCCcccccccCC-cEEEEEEEeEEEEEECCE-----EEEecCCCEEEEcCCCCeeeeCCCCC-CeEE
Confidence 34567778889999965 5677865 999999999999998776 89999999999999999999999999 9999
Q ss_pred EEEec
Q 041665 157 ISAFG 161 (206)
Q Consensus 157 i~~~~ 161 (206)
+++..
T Consensus 177 l~~~~ 181 (185)
T PRK09943 177 ISAHT 181 (185)
T ss_pred EEEeC
Confidence 98764
No 15
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.33 E-value=9.5e-12 Score=96.81 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=74.5
Q ss_pred ccCCCCCCeEEEEEEEecCCCcC-CCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCC--CeEEEEeC
Q 041665 72 EFPALNGQSVSTAILQFPAGAIN-PPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKG--LVHYQYNS 148 (206)
Q Consensus 72 ~~P~l~~~gi~~~~~~l~pg~~~-~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g--~~H~~~N~ 148 (206)
.+-+|+.. .+....++||+.. ..|||...+|++||++|++++.+++. .+.|++||++-||+| ..|.+.|.
T Consensus 35 ~~~Gl~~f--Gvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~-----e~~lrpGD~~gFpAG~~~aHhliN~ 107 (161)
T COG3837 35 DALGLKRF--GVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG-----ETRLRPGDSAGFPAGVGNAHHLINR 107 (161)
T ss_pred hhcChhhc--ccceEEeCCCCccccccccccCceEEEEEcCceEEEECCe-----eEEecCCceeeccCCCcceeEEeec
Confidence 44456554 4455668899975 78999999999999999999998776 899999999999999 89999999
Q ss_pred CCCccEEEEEEecCCCcceeeec
Q 041665 149 KANQPAAAISAFGSASAGTVSVP 171 (206)
Q Consensus 149 g~~~~a~~i~~~~s~~pg~~~~~ 171 (206)
++. .++++++-+...-....++
T Consensus 108 s~~-~~~yL~vG~r~~~d~i~YP 129 (161)
T COG3837 108 SDV-ILRYLEVGTREPDDIITYP 129 (161)
T ss_pred CCc-eEEEEEeccccccceeecC
Confidence 999 8888887655443444444
No 16
>PRK11171 hypothetical protein; Provisional
Probab=99.31 E-value=6.6e-11 Score=101.10 Aligned_cols=109 Identities=17% Similarity=0.097 Sum_probs=84.5
Q ss_pred CCCCcCCCCceEeccccccCCCCCCceEEEEeeccccCCCCCCeEEEEEEEecCCCcCCCccCC-CCcEEEEEEeeEEEE
Q 041665 37 SNDAIDGNFFTFTGMRSIIEGDDPPIFRVSKASMAEFPALNGQSVSTAILQFPAGAINPPHTHP-RSAELLFVVSGILEV 115 (206)
Q Consensus 37 ~p~~~~~~dF~~~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gi~~~~~~l~pg~~~~~H~H~-~a~E~~yVl~G~~~~ 115 (206)
+.+.+++++.+.+.+..- .+..++.+... ..+.++.+.+++++||+....|.|+ +.+|++||++|++++
T Consensus 27 ~~a~~~p~~~v~~~lp~~------~~~~~~~L~~~----~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v 96 (266)
T PRK11171 27 AYAVIPPDDIVTSVLPGW------ENTRAWVLARP----GLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITL 96 (266)
T ss_pred CeEEECCcCEEeecCCCC------CCeEEEEEeCC----CCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEE
Confidence 466777777777665321 13344443322 2245689999999999987666664 558999999999999
Q ss_pred EEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEec
Q 041665 116 GFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAFG 161 (206)
Q Consensus 116 ~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~~ 161 (206)
.+.++ ++.|++||.++||++..|+++|.+++ +++++++..
T Consensus 97 ~~~g~-----~~~L~~GDsi~~p~~~~H~~~N~g~~-~a~~l~v~~ 136 (266)
T PRK11171 97 TLEGK-----THALSEGGYAYLPPGSDWTLRNAGAE-DARFHWIRK 136 (266)
T ss_pred EECCE-----EEEECCCCEEEECCCCCEEEEECCCC-CEEEEEEEc
Confidence 98766 89999999999999999999999999 999998863
No 17
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.30 E-value=2.3e-11 Score=111.44 Aligned_cols=79 Identities=23% Similarity=0.225 Sum_probs=72.3
Q ss_pred CeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEE
Q 041665 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAIS 158 (206)
Q Consensus 79 ~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~ 158 (206)
.++.+.+++++||+..+.|+|+...|.+||++|++++.++++ ++.|++||+++||+|.+|++.|.|++ ++++++
T Consensus 374 ~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~-----~~~l~~GDsi~ip~~~~H~~~N~g~~-~~~~i~ 447 (468)
T TIGR01479 374 DRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDE-----TLLLTENESTYIPLGVIHRLENPGKI-PLELIE 447 (468)
T ss_pred CCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCC-CEEEEE
Confidence 367899999999998888888878999999999999998776 89999999999999999999999999 999999
Q ss_pred EecCC
Q 041665 159 AFGSA 163 (206)
Q Consensus 159 ~~~s~ 163 (206)
+.+.+
T Consensus 448 v~~~~ 452 (468)
T TIGR01479 448 VQSGS 452 (468)
T ss_pred EEcCC
Confidence 98644
No 18
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.29 E-value=2.8e-11 Score=110.90 Aligned_cols=80 Identities=20% Similarity=0.207 Sum_probs=71.9
Q ss_pred CCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEE
Q 041665 78 GQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAI 157 (206)
Q Consensus 78 ~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i 157 (206)
+.++.+.+++++||+....|+|...+|.+||++|++++.+.++ ++.|++||.++||+|.+|+++|.|++ +++++
T Consensus 382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~-----~~~L~~GDSi~ip~g~~H~~~N~g~~-~l~iI 455 (478)
T PRK15460 382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD-----IKLLGENESIYIPLGATHCLENPGKI-PLDLI 455 (478)
T ss_pred CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCC-CEEEE
Confidence 3467899999999998777777777899999999999999876 89999999999999999999999999 99999
Q ss_pred EEecCC
Q 041665 158 SAFGSA 163 (206)
Q Consensus 158 ~~~~s~ 163 (206)
++....
T Consensus 456 ~V~~g~ 461 (478)
T PRK15460 456 EVRSGS 461 (478)
T ss_pred EEEcCC
Confidence 987543
No 19
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.25 E-value=6e-11 Score=93.24 Aligned_cols=89 Identities=25% Similarity=0.242 Sum_probs=78.0
Q ss_pred CceEEEEeeccccCCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCC
Q 041665 61 PIFRVSKASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKG 140 (206)
Q Consensus 61 ~g~~v~~~~~~~~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g 140 (206)
..|+.+.+.. +.++.+.++.+.||....+|.|....|.++|++|++.+.+++. .+.+++||.++||+|
T Consensus 50 pWG~~~~l~~-------~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~-----~~~~~~g~sv~Ip~g 117 (151)
T PF01050_consen 50 PWGSYEVLDE-------GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDE-----EFTLKEGDSVYIPRG 117 (151)
T ss_pred CCcEEEEEEc-------cCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCE-----EEEEcCCCEEEECCC
Confidence 4566666553 3467899999999999999999888999999999999998776 899999999999999
Q ss_pred CeEEEEeCCCCccEEEEEEecC
Q 041665 141 LVHYQYNSKANQPAAAISAFGS 162 (206)
Q Consensus 141 ~~H~~~N~g~~~~a~~i~~~~s 162 (206)
..|++.|.|+. +.+++.+-..
T Consensus 118 ~~H~i~n~g~~-~L~~IEVq~G 138 (151)
T PF01050_consen 118 AKHRIENPGKT-PLEIIEVQTG 138 (151)
T ss_pred CEEEEECCCCc-CcEEEEEecC
Confidence 99999999999 9999987643
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.19 E-value=2.5e-10 Score=97.28 Aligned_cols=77 Identities=22% Similarity=0.197 Sum_probs=67.6
Q ss_pred CeEEEEEEEecCCCcC-CCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEE
Q 041665 79 QSVSTAILQFPAGAIN-PPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAI 157 (206)
Q Consensus 79 ~gi~~~~~~l~pg~~~-~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i 157 (206)
..+.+..++++||+.. .+|+|+..+|++||++|++++.+.++ ++.|++||.+++|++..|+++|.+++ +|+++
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~-----~~~L~~Gd~~y~pa~~~H~~~N~~~~-~a~~l 129 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGE-----THELREGGYAYLPPGSKWTLANAQAE-DARFF 129 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCC-CEEEE
Confidence 4579999999998865 45667766899999999999998766 89999999999999999999999999 99998
Q ss_pred EEec
Q 041665 158 SAFG 161 (206)
Q Consensus 158 ~~~~ 161 (206)
++-.
T Consensus 130 ~v~k 133 (260)
T TIGR03214 130 LYKK 133 (260)
T ss_pred EEEe
Confidence 8753
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.12 E-value=8.4e-10 Score=94.00 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=64.5
Q ss_pred eEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEE
Q 041665 80 SVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISA 159 (206)
Q Consensus 80 gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~ 159 (206)
++.+.+++++||+..+.|.|...+|.+||++|++.+.++++ .+.+++||++++|++.+|++.|.|++ +.+++.-
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~-----~~~V~~GD~i~i~~~~~h~~~~~G~~-~~~~l~y 251 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNN-----WVPVEAGDYIWMGAYCPQACYAGGRG-EFRYLLY 251 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCE-----EEEecCCCEEEECCCCCEEEEecCCC-cEEEEEE
Confidence 57888899999999986444345899999999999988766 89999999999999999999999999 8887753
No 22
>PRK11171 hypothetical protein; Provisional
Probab=99.12 E-value=5.1e-10 Score=95.63 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=66.6
Q ss_pred CeEEEEEEEecCCCcCCCc-cCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEE
Q 041665 79 QSVSTAILQFPAGAINPPH-THPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAI 157 (206)
Q Consensus 79 ~gi~~~~~~l~pg~~~~~H-~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i 157 (206)
..+.+.+++++||+..+.| +| ..+|.+||++|++++.++++ .+.|++||+++|+++.+|++.|.|++ +++++
T Consensus 182 ~~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~~~~-----~~~l~~GD~i~~~~~~~h~~~N~g~~-~~~yl 254 (266)
T PRK11171 182 FDMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRLNND-----WVEVEAGDFIWMRAYCPQACYAGGPG-PFRYL 254 (266)
T ss_pred CCcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCCEEEECCCCC-cEEEE
Confidence 3468999999999999885 55 55999999999999998766 89999999999999999999999999 98888
Q ss_pred EEe
Q 041665 158 SAF 160 (206)
Q Consensus 158 ~~~ 160 (206)
..-
T Consensus 255 ~~k 257 (266)
T PRK11171 255 LYK 257 (266)
T ss_pred EEc
Confidence 654
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=99.01 E-value=5.1e-09 Score=80.97 Aligned_cols=93 Identities=15% Similarity=0.215 Sum_probs=58.8
Q ss_pred eEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCC----CcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEE
Q 041665 80 SVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTT----NKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAA 155 (206)
Q Consensus 80 gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~----~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~ 155 (206)
.+.++.-++.||...|.|.|. .+|+++|++|+.+..+.... |+..++.+.+++.++||.+..|++.|.++.|++.
T Consensus 43 evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq 121 (167)
T PF02041_consen 43 EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ 121 (167)
T ss_dssp SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence 368999999999999999995 59999999999999988653 6778999999999999999999999999633888
Q ss_pred EEEEecCCCcceeeechh
Q 041665 156 AISAFGSASAGTVSVPTT 173 (206)
Q Consensus 156 ~i~~~~s~~pg~~~~~~~ 173 (206)
++++.+..--..+.+.+|
T Consensus 122 vlViiSrpPvkvf~y~dw 139 (167)
T PF02041_consen 122 VLVIISRPPVKVFIYDDW 139 (167)
T ss_dssp EEEEEESSS--EEEESST
T ss_pred EEEEecCCCeEEEEeccc
Confidence 888775443334455554
No 24
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.91 E-value=8.2e-09 Score=82.57 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=54.3
Q ss_pred EEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 86 LQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 86 ~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
+.-.||....+|+|+. +|++|+++|++++.+.+ +|+.....|++||++++|+|++|+.+...+.
T Consensus 39 vvgGpn~r~d~H~~~t-dE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~~~t 102 (177)
T PRK13264 39 VVGGPNARTDFHYDPG-EEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQREAGS 102 (177)
T ss_pred EEccCCcccccccCCC-ceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccCCCe
Confidence 3347888889999975 99999999999999987 4555589999999999999999999874333
No 25
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.90 E-value=1.3e-08 Score=80.32 Aligned_cols=61 Identities=18% Similarity=0.342 Sum_probs=52.9
Q ss_pred cCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 89 PAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 89 ~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
.||....+|.|+ .+|++|+++|++.+.+.++ |+.....|++||++++|+|++|+.....+.
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~t 96 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAGS 96 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCCc
Confidence 677778899997 5999999999999998774 556689999999999999999999886544
No 26
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.74 E-value=1.4e-07 Score=76.22 Aligned_cols=87 Identities=21% Similarity=0.288 Sum_probs=58.9
Q ss_pred CCCCeEEEEEEEecCCCcC------CCccCCC------CcEEEEEEeeEEEEEEEeCCC----cEEEEEEcCCCEEEECC
Q 041665 76 LNGQSVSTAILQFPAGAIN------PPHTHPR------SAELLFVVSGILEVGFIDTTN----KLYTQTLQIGDMFVFPK 139 (206)
Q Consensus 76 l~~~gi~~~~~~l~pg~~~------~~H~H~~------a~E~~yVl~G~~~~~~~~~~~----~~~~~~L~~GD~~~~P~ 139 (206)
+...++......+.||.+. .-|+|+. ..|+.+|++|++.+.+.+.++ +.+...+++||+++||+
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp 124 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPP 124 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-T
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECC
Confidence 3444577888888887753 4599987 899999999999999998887 77889999999999999
Q ss_pred CCeEEEEeCCCCccEEEEEEecCC
Q 041665 140 GLVHYQYNSKANQPAAAISAFGSA 163 (206)
Q Consensus 140 g~~H~~~N~g~~~~a~~i~~~~s~ 163 (206)
+..|+..|+|++ +.++.....+.
T Consensus 125 ~yaH~tIN~g~~-~L~~~~~~~~~ 147 (182)
T PF06560_consen 125 GYAHRTINTGDE-PLVFAAWVPRD 147 (182)
T ss_dssp T-EEEEEE-SSS--EEEEEEEETT
T ss_pred CceEEEEECCCC-cEEEEEEEecC
Confidence 999999999999 88888777543
No 27
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.68 E-value=1e-07 Score=71.03 Aligned_cols=64 Identities=27% Similarity=0.402 Sum_probs=47.3
Q ss_pred CCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEe
Q 041665 90 AGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAF 160 (206)
Q Consensus 90 pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~ 160 (206)
++...++|+|+. -|+.||++|+.++.++++ .+.+++||++++|+|.+|.....+++ +...+.+.
T Consensus 12 ~~~~~~~h~h~~-~~i~~v~~G~~~~~~~~~-----~~~l~~g~~~li~p~~~H~~~~~~~~-~~~~~~i~ 75 (136)
T PF02311_consen 12 PNFEFPPHWHDF-YEIIYVLSGEGTLHIDGQ-----EYPLKPGDLFLIPPGQPHSYYPDSNE-PWEYYWIY 75 (136)
T ss_dssp TT-SEEEETT-S-EEEEEEEEE-EEEEETTE-----EEEE-TT-EEEE-TTS-EEEEE-TTS-EEEEEEEE
T ss_pred CCCccCCEECCC-EEEEEEeCCEEEEEECCE-----EEEEECCEEEEecCCccEEEecCCCC-CEEEEEEE
Confidence 445568899975 999999999999988666 89999999999999999999998876 66655554
No 28
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.61 E-value=6.4e-07 Score=74.41 Aligned_cols=73 Identities=22% Similarity=0.265 Sum_probs=53.6
Q ss_pred CCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEE
Q 041665 77 NGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAA 156 (206)
Q Consensus 77 ~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~ 156 (206)
.+..++...+++.. ...+ ||-+.+|+.||++|++++.++++ ++.+++||+++||+|..|.+.+.+ .+++
T Consensus 153 d~s~m~aGf~~~~~-~sf~--wtl~~dEi~YVLEGe~~l~IdG~-----t~~l~pGDvlfIPkGs~~hf~tp~---~aRf 221 (233)
T PRK15457 153 DGSSMAAGFMQWEN-AFFP--WTLNYDEIDMVLEGELHVRHEGE-----TMIAKAGDVMFIPKGSSIEFGTPS---SVRF 221 (233)
T ss_pred CCCceeeEEEEEec-Cccc--eeccceEEEEEEEeEEEEEECCE-----EEEeCCCcEEEECCCCeEEecCCC---CeeE
Confidence 34456666666664 3344 55556999999999999998765 899999999999999996665543 3444
Q ss_pred EEEe
Q 041665 157 ISAF 160 (206)
Q Consensus 157 i~~~ 160 (206)
+.+.
T Consensus 222 lyV~ 225 (233)
T PRK15457 222 LYVA 225 (233)
T ss_pred EEEE
Confidence 4433
No 29
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.61 E-value=2.8e-07 Score=65.57 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=55.7
Q ss_pred eEEEEEEEecCCCcC-CCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEE
Q 041665 80 SVSTAILQFPAGAIN-PPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAIS 158 (206)
Q Consensus 80 gi~~~~~~l~pg~~~-~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~ 158 (206)
.++...++|+||+.- +.+.+. ..-.+||++|.+++.+.+. +..+.+|+++++|+|-...++|.+++ +|+++-
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~-~~~vF~V~~G~v~Vti~~~-----~f~v~~G~~F~VP~gN~Y~i~N~~~~-~a~LfF 83 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRD-NTMVFYVIKGKVEVTIHET-----SFVVTKGGSFQVPRGNYYSIKNIGNE-EAKLFF 83 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--S-EEEEEEEEESEEEEEETTE-----EEEEETT-EEEE-TT-EEEEEE-SSS--EEEEE
T ss_pred CceeEEEEeCCCCccCCcccCC-cEEEEEEEeCEEEEEEcCc-----EEEEeCCCEEEECCCCEEEEEECCCC-cEEEEE
Confidence 468899999999976 557774 4899999999999999776 89999999999999999999999999 888764
No 30
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.60 E-value=2e-07 Score=77.29 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=62.3
Q ss_pred EEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEe
Q 041665 81 VSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAF 160 (206)
Q Consensus 81 i~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~ 160 (206)
..+..+++.||+..|.|.|.+ .|+.+|++|++ .++ ...+.+||++..|.|..|...+.+++ +++++++.
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~G-~E~tlVLeG~f----~de-----~g~y~~Gd~i~~p~~~~H~p~a~~~~-~Cicl~v~ 195 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHKG-FELTLVLHGAF----SDE-----TGVYGVGDFEEADGSVQHQPRTVSGG-DCLCLAVL 195 (215)
T ss_pred cEEEEEEECCCCccCCCcCCC-cEEEEEEEEEE----EcC-----CCccCCCeEEECCCCCCcCcccCCCC-CeEEEEEe
Confidence 467888899999999999965 99999999985 344 35689999999999999999999888 89999987
Q ss_pred cCC
Q 041665 161 GSA 163 (206)
Q Consensus 161 ~s~ 163 (206)
+..
T Consensus 196 dap 198 (215)
T TIGR02451 196 DAP 198 (215)
T ss_pred cCC
Confidence 654
No 31
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.59 E-value=1.9e-07 Score=80.99 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=52.4
Q ss_pred EEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 84 AILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 84 ~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
....-+|..+.++|||.+ -|+.|+++|++.+.+.++ .+.+++||+++++++.+|.+...++.
T Consensus 29 ~~~~~~~~~m~~~HwH~e-~Ei~yv~~G~~~~~i~g~-----~~~l~~Gd~ili~s~~~H~~~~~~~~ 90 (302)
T PRK10371 29 EIEFRPPHIMPTSHWHGQ-VEVNVPFDGDVEYLINNE-----KVQINQGHITLFWACTPHQLTDPGNC 90 (302)
T ss_pred EEEeeCCCCCCCCCcccc-EEEEEecCCcEEEEECCE-----EEEEcCCcEEEEecCCcccccccCCC
Confidence 334456777889999976 999999999999988766 89999999999999999998765544
No 32
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.58 E-value=5.5e-07 Score=71.21 Aligned_cols=66 Identities=24% Similarity=0.269 Sum_probs=51.0
Q ss_pred CCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEec
Q 041665 94 NPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAFG 161 (206)
Q Consensus 94 ~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~~ 161 (206)
...|.|.+ +|+-||++|++.+.+...+++.....+++||.+++|+|+.||+.-.... ..+++=.|.
T Consensus 85 ~~EH~H~d-eEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~-~i~aiRlF~ 150 (157)
T PF03079_consen 85 FEEHTHED-EEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESP-YIKAIRLFK 150 (157)
T ss_dssp CS-EEESS--EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTS-SEEEEEEES
T ss_pred heeEecCh-heEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCC-cEEEEEeec
Confidence 36899987 9999999999999999887777779999999999999999999865555 677766664
No 33
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.49 E-value=2.3e-07 Score=66.61 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=57.7
Q ss_pred CceEEEEeeccccCCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCC
Q 041665 61 PIFRVSKASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKG 140 (206)
Q Consensus 61 ~g~~v~~~~~~~~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g 140 (206)
.|.++..+.... . ..+..+..++++||+..|.|.|+. .|.+|||+|++.. .+ ..+.+||.++.|+|
T Consensus 8 ~Gv~~~~L~~~~--~--~~g~~~~L~r~~pG~~~p~H~H~g-~ee~~VLeG~~~d----~~-----~~~~~G~~~~~p~g 73 (91)
T PF12973_consen 8 PGVSVKPLHRDE--G--ETGERVSLLRLEPGASLPRHRHPG-GEEILVLEGELSD----GD-----GRYGAGDWLRLPPG 73 (91)
T ss_dssp TTEEEEEEEECS--S--STTEEEEEEEE-TTEEEEEEEESS--EEEEEEECEEEE----TT-----CEEETTEEEEE-TT
T ss_pred CCEEEEEeccCC--C--cccCEEEEEEECCCCCcCccCCCC-cEEEEEEEEEEEE----CC-----ccCCCCeEEEeCCC
Confidence 355555554322 1 124578888999999999999976 8888999998763 32 34699999999999
Q ss_pred CeEEEEeCCCCccEEEEE
Q 041665 141 LVHYQYNSKANQPAAAIS 158 (206)
Q Consensus 141 ~~H~~~N~g~~~~a~~i~ 158 (206)
..|.... ++ .|.++.
T Consensus 74 ~~h~~~s--~~-gc~~~v 88 (91)
T PF12973_consen 74 SSHTPRS--DE-GCLILV 88 (91)
T ss_dssp EEEEEEE--SS-CEEEEE
T ss_pred CccccCc--CC-CEEEEE
Confidence 9999985 45 566664
No 34
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.45 E-value=1.7e-06 Score=68.50 Aligned_cols=69 Identities=22% Similarity=0.366 Sum_probs=58.6
Q ss_pred CCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEecCCCcc
Q 041665 95 PPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAFGSASAG 166 (206)
Q Consensus 95 ~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~~s~~pg 166 (206)
.-|.|.+ +|+-|++.|.+.+.+...+|+.+...+.+||.+.+|+|+-||+.-..+. ..+++-.|+ ..+|
T Consensus 89 ~EH~H~d-~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~-~f~AvRlF~-~~~g 157 (181)
T COG1791 89 QEHLHTD-DEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESP-NFKAVRLFT-EPEG 157 (181)
T ss_pred HHhccCC-ceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCC-cEEEEEEee-CCCC
Confidence 4699976 9999999999999999999999999999999999999999999876655 666666564 3444
No 35
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.34 E-value=3.4e-06 Score=71.70 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=45.0
Q ss_pred CCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeC
Q 041665 91 GAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNS 148 (206)
Q Consensus 91 g~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~ 148 (206)
+...++|||.. .|++||++|++++.+++. .+.+++||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~~-~ei~~v~~G~~~~~i~~~-----~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHDY-YEFTLVLTGRYYQEINGK-----RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCccccc-EEEEEEEeceEEEEECCE-----EEEECCCcEEEeCCCCccceeee
Confidence 33558999965 999999999999998765 89999999999999999977544
No 36
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.29 E-value=2.3e-06 Score=73.29 Aligned_cols=57 Identities=19% Similarity=0.102 Sum_probs=48.3
Q ss_pred cCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 89 PAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 89 ~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
.+....++|||.. .|++||++|++++.+++. .+.+++||++++|+|.+|.+...++.
T Consensus 26 ~~~~~~~~H~H~~-~ei~~i~~G~~~~~i~~~-----~~~l~~g~~~~I~p~~~H~~~~~~~~ 82 (290)
T PRK13501 26 YPQETFVEHTHQF-CEIVIVWRGNGLHVLNDH-----PYRITCGDVFYIQAADHHSYESVHDL 82 (290)
T ss_pred CCCCCCccccccc-eeEEEEecCceEEEECCe-----eeeecCCeEEEEcCCCcccccccCCe
Confidence 3444567999965 999999999999998766 89999999999999999998765433
No 37
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=98.28 E-value=1.6e-05 Score=60.97 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=55.3
Q ss_pred CceEEEEeeccc-cCCCCCCeEEEEEE-EecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCC-EEEE
Q 041665 61 PIFRVSKASMAE-FPALNGQSVSTAIL-QFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGD-MFVF 137 (206)
Q Consensus 61 ~g~~v~~~~~~~-~P~l~~~gi~~~~~-~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD-~~~~ 137 (206)
..|.++.+...+ .|. .-. .+..+ ..++|....+|.|....|+++|++|++++.+.+..+ ..++.|...+ .+++
T Consensus 14 ~RG~L~~~e~~~~ipf-~i~--rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~-~~~~~L~~~~~~L~I 89 (131)
T PF05523_consen 14 ERGSLSVIERFDDIPF-EIK--RVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGRE-EEEFILDEPNKGLYI 89 (131)
T ss_dssp TTEEEEEEETTTSSSS------EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS--EEEEEE--TTEEEEE
T ss_pred CCCcEEEEeccCCCCC-Ccc--EEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCC-cEEEEECCCCeEEEE
Confidence 356677766553 332 111 34444 344555579999999999999999999999876543 3577887775 9999
Q ss_pred CCCCeEEEEeCCCCccEEEEEEecCC
Q 041665 138 PKGLVHYQYNSKANQPAAAISAFGSA 163 (206)
Q Consensus 138 P~g~~H~~~N~g~~~~a~~i~~~~s~ 163 (206)
|+|.+|.+.|.+++ +++++ +.+.
T Consensus 90 ppg~w~~~~~~s~~--svlLv-~as~ 112 (131)
T PF05523_consen 90 PPGVWHGIKNFSED--SVLLV-LASE 112 (131)
T ss_dssp -TT-EEEEE---TT---EEEE-EESS
T ss_pred CCchhhHhhccCCC--cEEEE-EcCC
Confidence 99999999999766 55554 4444
No 38
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.26 E-value=3.9e-06 Score=73.01 Aligned_cols=57 Identities=21% Similarity=0.136 Sum_probs=48.8
Q ss_pred cCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 89 PAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 89 ~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
-|....++|||+. -|++||.+|++.+.+++. .+.+++||+++||++.+|.+....+.
T Consensus 56 ~~~~~~~~H~H~~-~el~~v~~G~g~~~v~~~-----~~~l~~Gdl~~I~~~~~H~~~~~~~~ 112 (312)
T PRK13500 56 YPQDVFAEHTHDF-CELVIVWRGNGLHVLNDR-----PYRITRGDLFYIHADDKHSYASVNDL 112 (312)
T ss_pred CCCCCCCccccce-EEEEEEEcCeEEEEECCE-----EEeecCCeEEEECCCCeecccccCCc
Confidence 3444568999964 999999999999998776 89999999999999999998865544
No 39
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.16 E-value=5.7e-06 Score=70.46 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=47.9
Q ss_pred CCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 91 GAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 91 g~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
+...++|||.+.-|++||.+|++.+.+++. .+.+++||++++|+|..|.+....+.
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~~~-----~~~l~~g~~~ii~~~~~H~~~~~~~~ 88 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLDEH-----EYSEYAPCFFLTPPSVPHGFVTDLDA 88 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEECCE-----EEEecCCeEEEeCCCCccccccCCCc
Confidence 345799999645899999999999988665 89999999999999999999765554
No 40
>PRK13502 transcriptional activator RhaR; Provisional
Probab=98.15 E-value=8.3e-06 Score=69.39 Aligned_cols=58 Identities=19% Similarity=0.108 Sum_probs=48.7
Q ss_pred ecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 88 FPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 88 l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
..|+...++|||. .-|++||.+|++++.++++ .+.+++||++++|++.+|.+...++.
T Consensus 25 ~~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~~~-----~~~l~~g~l~li~~~~~H~~~~~~~~ 82 (282)
T PRK13502 25 RYPQDVFAEHTHE-FCELVMVWRGNGLHVLNER-----PYRITRGDLFYIRAEDKHSYTSVNDL 82 (282)
T ss_pred CCCCCCCCccccc-eEEEEEEecCcEEEEECCE-----EEeecCCcEEEECCCCcccccccCCc
Confidence 3455557899996 5999999999999988665 89999999999999999998764443
No 41
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=98.11 E-value=3.2e-05 Score=60.17 Aligned_cols=66 Identities=14% Similarity=0.290 Sum_probs=47.4
Q ss_pred EEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 84 AILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 84 ~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
..+.-.|+.....|.-+. +|++|-++|.+.+.+.++ |+.....+++||++..|++++|+.+-..++
T Consensus 36 VmvVGGPN~R~DyHine~-eE~FyQ~kG~m~Lkv~e~-g~~kdi~I~EGe~fLLP~~vpHsP~R~~~t 101 (151)
T PF06052_consen 36 VMVVGGPNQRTDYHINET-EEFFYQLKGDMCLKVVED-GKFKDIPIREGEMFLLPANVPHSPQRPADT 101 (151)
T ss_dssp EEEEESSB--SSEEE-SS--EEEEEEES-EEEEEEET-TEEEEEEE-TTEEEEE-TT--EEEEE-TT-
T ss_pred EEEEcCCCCCCccccCCc-ceEEEEEeCcEEEEEEeC-CceEEEEeCCCcEEecCCCCCCCCcCCCCc
Confidence 445567888889999875 999999999999998884 777899999999999999999999877555
No 42
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.11 E-value=4.5e-05 Score=57.67 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=72.2
Q ss_pred CCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEE
Q 041665 77 NGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAA 156 (206)
Q Consensus 77 ~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~ 156 (206)
.+.|+|+-...+.+|.....|+-. .-|.+||++|+.++...+ +|+ .+.+++|.++...+...|..+.. + +.++
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~-~G~--~~~i~pGt~YaLd~hD~H~lra~--~-dm~~ 103 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLD-TGE--VHPIKPGTMYALDKHDRHYLRAK--T-DMRL 103 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEcc-CCc--EEEcCCCeEEecCCCccEEEEec--C-CEEE
Confidence 456899999999999999888874 499999999999998664 466 89999999999999999999875 4 6899
Q ss_pred EEEecCCCcce
Q 041665 157 ISAFGSASAGT 167 (206)
Q Consensus 157 i~~~~s~~pg~ 167 (206)
+++|+.+--|.
T Consensus 104 vCVFnPpltG~ 114 (126)
T PF06339_consen 104 VCVFNPPLTGR 114 (126)
T ss_pred EEEcCCCCcCc
Confidence 99999876554
No 43
>PRK13503 transcriptional activator RhaS; Provisional
Probab=98.10 E-value=5.6e-06 Score=70.08 Aligned_cols=54 Identities=22% Similarity=0.159 Sum_probs=47.4
Q ss_pred CCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCC
Q 041665 90 AGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSK 149 (206)
Q Consensus 90 pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g 149 (206)
+....++|||.. -|++||++|.+++.+.+. .+.+++||++++|++..|.+....
T Consensus 24 ~~~~~~~H~H~~-~ei~~v~~G~~~~~i~~~-----~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 24 PQAAFPEHHHDF-HEIVIVEHGTGIHVFNGQ-----PYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred ccccccccccCc-eeEEEEecCceeeEecCC-----cccccCCcEEEECCCccchhhhcc
Confidence 445578999965 999999999999998877 799999999999999999887653
No 44
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.09 E-value=8.6e-06 Score=64.13 Aligned_cols=57 Identities=21% Similarity=0.371 Sum_probs=51.5
Q ss_pred CCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 94 NPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 94 ~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
...|.|++ +|+-||++|+..+-+.+.+++.....++.||.+++|+|+-|++.-..+.
T Consensus 86 fEEhlh~d-eeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n 142 (179)
T KOG2107|consen 86 FEEHLHED-EEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSN 142 (179)
T ss_pred HHHhcCch-hheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchH
Confidence 36899988 9999999999999999998898899999999999999999999765443
No 45
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.05 E-value=1e-05 Score=71.21 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=62.0
Q ss_pred eEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEE
Q 041665 80 SVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISA 159 (206)
Q Consensus 80 gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~ 159 (206)
.+....-.++||...++|.|.. .-+.+|++|+..+..++. + ....++||+++.|++..|...|.+++ ++..+.+
T Consensus 80 tl~a~~q~l~pGe~~~~HRht~-sAl~~vveG~G~~t~V~g--~--~~~~~~gD~~~tP~w~wH~H~n~~d~-~~~wld~ 153 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHTQ-SALRFIVEGKGAFTAVDG--E--RTTMHPGDFIITPSWTWHDHGNPGDE-PMIWLDG 153 (335)
T ss_pred hHHhhhEEeCCCCCCCcccccc-ceEEEEEEcCceEEEECC--E--EEeeeCCCEEEeCCCeeEecccCCCC-cEEEEec
Confidence 3466677799999999999964 899999999986554433 2 89999999999999999999999988 7666555
Q ss_pred e
Q 041665 160 F 160 (206)
Q Consensus 160 ~ 160 (206)
.
T Consensus 154 l 154 (335)
T TIGR02272 154 L 154 (335)
T ss_pred C
Confidence 4
No 46
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.05 E-value=1.8e-05 Score=60.64 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=55.3
Q ss_pred CCcC-CCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEec
Q 041665 91 GAIN-PPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAFG 161 (206)
Q Consensus 91 g~~~-~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~~ 161 (206)
|+++ --|+|..+.|++.|++|++.+.+.+.+|. ...+++||++++|+|+-|.-.. +.- +..++.+|.
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~rl~-sS~-DF~VvGaYp 119 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHCRLH-SSA-DFQVVGAYP 119 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCccccccc-CCC-CeEEEcccC
Confidence 4444 45899999999999999999999999887 7899999999999999997643 344 566776664
No 47
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.00 E-value=5.9e-05 Score=62.16 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=65.3
Q ss_pred EEEEEEEecCCC-cCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEE
Q 041665 81 VSTAILQFPAGA-INPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISA 159 (206)
Q Consensus 81 i~~~~~~l~pg~-~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~ 159 (206)
++-..+++.|+| .-.+-.-++++-++||++|++++.+.++ ++.|++|+..++|+|..|..+|...+ ++++.++
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~-----th~l~eggyaylPpgs~~~~~N~~~~-~~rfhw~ 134 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK-----THALREGGYAYLPPGSGWTLRNAQKE-DSRFHWI 134 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe-----EEEeccCCeEEeCCCCcceEeeccCC-ceEEEEE
Confidence 466788898877 5577777888999999999999998877 89999999999999999999999988 8888876
Q ss_pred ec
Q 041665 160 FG 161 (206)
Q Consensus 160 ~~ 161 (206)
-.
T Consensus 135 rk 136 (264)
T COG3257 135 RK 136 (264)
T ss_pred ee
Confidence 53
No 48
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.96 E-value=2.3e-05 Score=54.17 Aligned_cols=60 Identities=23% Similarity=0.337 Sum_probs=44.7
Q ss_pred EEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEe
Q 041665 81 VSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYN 147 (206)
Q Consensus 81 i~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N 147 (206)
++....+..||. .++++. .+|++||++|++++... +|. ++++++||++++|+|..-.+.-
T Consensus 7 ~~~g~w~~~pg~-~~~~~~--~~E~~~vleG~v~it~~--~G~--~~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 7 FSAGVWECTPGK-FPWPYP--EDEFFYVLEGEVTITDE--DGE--TVTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp EEEEEEEEECEE-EEEEES--SEEEEEEEEEEEEEEET--TTE--EEEEETTEEEEE-TTEEEEEEE
T ss_pred EEEEEEEECCce-eEeeCC--CCEEEEEEEeEEEEEEC--CCC--EEEEcCCcEEEECCCCEEEEEE
Confidence 566777777865 334443 39999999999998743 455 7999999999999998766543
No 49
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.88 E-value=3.2e-05 Score=66.49 Aligned_cols=92 Identities=24% Similarity=0.389 Sum_probs=75.1
Q ss_pred EEEEeeccccCCCCCCe-----EEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEEC
Q 041665 64 RVSKASMAEFPALNGQS-----VSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFP 138 (206)
Q Consensus 64 ~v~~~~~~~~P~l~~~g-----i~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P 138 (206)
.++.+-.-+-|++++.. +....--+.||...|.|.|.. .-+-+|++|+..++.++.+ ...+++||.+..|
T Consensus 70 a~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHsq-sAlRFvveG~Ga~T~VdGe----r~~M~~GDfilTP 144 (351)
T COG3435 70 AVRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQ-SALRFVVEGKGAYTVVDGE----RTPMEAGDFILTP 144 (351)
T ss_pred ceeEEEEecCCCCCCcccccHHHHhhhheecCcccCCcccccc-cceEEEEeccceeEeecCc----eeeccCCCEEEcc
Confidence 45555566778887763 234455688999999999965 8999999999988887652 6899999999999
Q ss_pred CCCeEEEEeCCCCccEEEEEEec
Q 041665 139 KGLVHYQYNSKANQPAAAISAFG 161 (206)
Q Consensus 139 ~g~~H~~~N~g~~~~a~~i~~~~ 161 (206)
++..|.--|.|++ +++.+-.++
T Consensus 145 ~w~wHdHgn~g~e-P~iWlDgLD 166 (351)
T COG3435 145 AWTWHDHGNEGTE-PCIWLDGLD 166 (351)
T ss_pred CceeccCCCCCCC-ceEEEcccc
Confidence 9999999999999 998887664
No 50
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.83 E-value=4.5e-05 Score=59.88 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=43.1
Q ss_pred EEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCC
Q 041665 81 VSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSK 149 (206)
Q Consensus 81 i~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g 149 (206)
++...+++... +.-|.-.-+|+.||++|++++... |+ ++..++||+++||+|.--.+...+
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~---G~--~~~A~~GDvi~iPkGs~I~fst~~ 137 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISID---GQ--TVTAKPGDVIFIPKGSTITFSTPD 137 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEET---TE--EEEEETT-EEEE-TT-EEEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEEC---CE--EEEEcCCcEEEECCCCEEEEecCC
Confidence 45566666653 344565679999999999998754 44 899999999999999887776543
No 51
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.82 E-value=0.00032 Score=56.41 Aligned_cols=84 Identities=23% Similarity=0.282 Sum_probs=59.3
Q ss_pred eEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCc--------EEEEEEcCCCEEEECCCCeEEEEeCC-C
Q 041665 80 SVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNK--------LYTQTLQIGDMFVFPKGLVHYQYNSK-A 150 (206)
Q Consensus 80 gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~--------~~~~~L~~GD~~~~P~g~~H~~~N~g-~ 150 (206)
.+++..+.-.||...+.|-|.++.-++.|++|+++-......+. .....+..|...+++.+.+|++.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 46788899999999999999877788999999988775543322 12445778888888999999999987 7
Q ss_pred CccEEEEEEecCCC
Q 041665 151 NQPAAAISAFGSAS 164 (206)
Q Consensus 151 ~~~a~~i~~~~s~~ 164 (206)
+ +++-+-+|+.+-
T Consensus 154 ~-~avSLHvYspPl 166 (175)
T PF05995_consen 154 E-PAVSLHVYSPPL 166 (175)
T ss_dssp S--EEEEEEEES--
T ss_pred C-CEEEEEEcCCCh
Confidence 7 999999997654
No 52
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.77 E-value=0.00012 Score=64.64 Aligned_cols=66 Identities=24% Similarity=0.189 Sum_probs=55.2
Q ss_pred EEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEE
Q 041665 85 ILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISA 159 (206)
Q Consensus 85 ~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~ 159 (206)
...+++|....+|.|.. ..+++|++|+.+..++++ +...++||++++|+...|...|. + ++.+|.+
T Consensus 254 ~q~L~~G~~t~~~r~T~-s~Vf~VieG~G~s~ig~~-----~~~W~~gD~f~vPsW~~~~h~a~--~-da~Lf~~ 319 (335)
T TIGR02272 254 IQLLPKGFRTATYRSTD-ATVFCVVEGRGQVRIGDA-----VFRFSPKDVFVVPSWHPVRFEAS--D-DAVLFSF 319 (335)
T ss_pred HhccCCCCCCCCccccc-cEEEEEEeCeEEEEECCE-----EEEecCCCEEEECCCCcEecccC--C-CeEEEEe
Confidence 35578888999999954 999999999999998766 89999999999999988887774 4 5666554
No 53
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.74 E-value=0.00023 Score=55.53 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=51.9
Q ss_pred CCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCC
Q 041665 77 NGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSK 149 (206)
Q Consensus 77 ~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g 149 (206)
++..+.+...+..+ ...||--. -+|+-||++|++.+...++ +...++||++++|+|.--.+...+
T Consensus 96 ~g~~l~aG~m~~~~-~tf~wtl~--yDe~d~VlEGrL~V~~~g~-----tv~a~aGDvifiPKgssIefst~g 160 (176)
T COG4766 96 EGSRLGAGLMEMKN-TTFPWTLN--YDEIDYVLEGRLHVRIDGR-----TVIAGAGDVIFIPKGSSIEFSTTG 160 (176)
T ss_pred cCCccccceeeecc-ccCcceec--ccceeEEEeeeEEEEEcCC-----eEecCCCcEEEecCCCeEEEeccc
Confidence 34456677777777 66666544 5999999999999998776 899999999999999887776654
No 54
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.73 E-value=5.4e-05 Score=64.12 Aligned_cols=73 Identities=30% Similarity=0.359 Sum_probs=46.1
Q ss_pred CeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEE
Q 041665 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAI 157 (206)
Q Consensus 79 ~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i 157 (206)
.|.+..++++++|-..|+|+|. +++-+||++|.+..+ + .+.....|.+|..++.|+|..|.-...+++ .+.++
T Consensus 34 ~g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~--~--~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~-~~~~~ 106 (251)
T PF14499_consen 34 DGPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG--D--PKAAAMWLPAGSYWFQPAGEPHITAAEGET-NLLFI 106 (251)
T ss_dssp TS-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET--T--EE-----E-TTEEEEE-TT-EEEETTS-EE--EEEE
T ss_pred CCcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC--C--CcccceecCCCceEeccCCCceeeeccCcc-EEEEE
Confidence 4568899999999999999996 599999999987653 2 233356799999999999999988776655 44444
No 55
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.41 E-value=0.00045 Score=59.54 Aligned_cols=66 Identities=24% Similarity=0.265 Sum_probs=57.1
Q ss_pred EEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEE
Q 041665 86 LQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISA 159 (206)
Q Consensus 86 ~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~ 159 (206)
-.++||-...+|.|.+ .-+..|.+|+.+..++++ ++...+||+|++|+-..|...|. .+ ++++|+.
T Consensus 266 qlL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~Ig~~-----rf~~~~~D~fvVPsW~~~~~~~g-s~-da~LFsf 331 (351)
T COG3435 266 QLLPPGFHGKAHRHTD-STIYHVVEGSGYTIIGGE-----RFDWSAGDIFVVPSWAWHEHVNG-SE-DAVLFSF 331 (351)
T ss_pred HhcCCcccCCceeccC-CEEEEEEecceeEEECCE-----EeeccCCCEEEccCcceeecccC-Cc-ceEEEec
Confidence 3478888889999976 889999999999998877 89999999999999999999996 45 6777764
No 56
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.28 E-value=0.0013 Score=49.32 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=48.1
Q ss_pred eEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeC
Q 041665 80 SVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNS 148 (206)
Q Consensus 80 gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~ 148 (206)
.+.....+-.|| .++++-...|++++|+|++++.-. +|+ ..++++||+++||+|..=.++-.
T Consensus 44 ~~~~GiWe~TpG---~~r~~y~~~E~chil~G~v~~T~d--~Ge--~v~~~aGD~~~~~~G~~g~W~V~ 105 (116)
T COG3450 44 QVETGIWECTPG---KFRVTYDEDEFCHILEGRVEVTPD--GGE--PVEVRAGDSFVFPAGFKGTWEVL 105 (116)
T ss_pred CeeEeEEEecCc---cceEEcccceEEEEEeeEEEEECC--CCe--EEEEcCCCEEEECCCCeEEEEEe
Confidence 456666776666 466776669999999999988633 355 78999999999999988766554
No 57
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.27 E-value=0.002 Score=51.74 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=55.3
Q ss_pred CCCcCCCccCCCC-cEEEEEEeeEEEEEEEeCC------CcEEEEEEcCC--CEEEECCCCeEEEEeCCCCccEEEEE
Q 041665 90 AGAINPPHTHPRS-AELLFVVSGILEVGFIDTT------NKLYTQTLQIG--DMFVFPKGLVHYQYNSKANQPAAAIS 158 (206)
Q Consensus 90 pg~~~~~H~H~~a-~E~~yVl~G~~~~~~~~~~------~~~~~~~L~~G--D~~~~P~g~~H~~~N~g~~~~a~~i~ 158 (206)
||-...+|+|... .+++.|++|++....++-- |+.....+.+- ..++||+|..|.+.|.+++ ..+++.
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~-~~~~y~ 130 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDD-AEVVYK 130 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCc-eEEEEE
Confidence 7888899999776 8999999999988776531 35667777766 7999999999999999998 644443
No 58
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=97.13 E-value=0.008 Score=48.43 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=58.4
Q ss_pred cCCCcCCCccC--CCCcEEEEEEeeEEEEEEEeCC------CcEEEEEEcC--CCEEEECCCCeEEEEeCCCCccEEEEE
Q 041665 89 PAGAINPPHTH--PRSAELLFVVSGILEVGFIDTT------NKLYTQTLQI--GDMFVFPKGLVHYQYNSKANQPAAAIS 158 (206)
Q Consensus 89 ~pg~~~~~H~H--~~a~E~~yVl~G~~~~~~~~~~------~~~~~~~L~~--GD~~~~P~g~~H~~~N~g~~~~a~~i~ 158 (206)
.+|....+|.| +....+++|++|++...++|-- |+.....|.+ +..++||+|..|.+.+.+++ ..+.+.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 56777899998 3469999999999988877641 5777888888 55999999999999999866 444444
Q ss_pred EecCCCcce
Q 041665 159 AFGSASAGT 167 (206)
Q Consensus 159 ~~~s~~pg~ 167 (206)
+-..-+|+.
T Consensus 131 ~~~~y~p~~ 139 (176)
T TIGR01221 131 CTDYYAPEY 139 (176)
T ss_pred CCCCcCccc
Confidence 322225544
No 59
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.99 E-value=0.0094 Score=48.03 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=56.5
Q ss_pred ecCCCcCCCccCCCC---cEEEEEEeeEEEEEEEeC--C----CcEEEEEEcCCC--EEEECCCCeEEEEeCCCCccEEE
Q 041665 88 FPAGAINPPHTHPRS---AELLFVVSGILEVGFIDT--T----NKLYTQTLQIGD--MFVFPKGLVHYQYNSKANQPAAA 156 (206)
Q Consensus 88 l~pg~~~~~H~H~~a---~E~~yVl~G~~~~~~~~~--~----~~~~~~~L~~GD--~~~~P~g~~H~~~N~g~~~~a~~ 156 (206)
-.+|.+..+|.|... ..++.|++|++...++|- + |+.....|.+++ .++||+|..|.+.+.+++ ..++
T Consensus 50 s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~-a~v~ 128 (176)
T PF00908_consen 50 SKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD-AEVL 128 (176)
T ss_dssp EETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE-EEEE
T ss_pred ccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc-eEEE
Confidence 345777899998664 689999999998887762 2 678899998887 799999999999999876 4455
Q ss_pred EEEecCCCcce
Q 041665 157 ISAFGSASAGT 167 (206)
Q Consensus 157 i~~~~s~~pg~ 167 (206)
+-+-..-+|+.
T Consensus 129 Y~~t~~y~p~~ 139 (176)
T PF00908_consen 129 YKVTNYYDPED 139 (176)
T ss_dssp EEESS---GGG
T ss_pred EecCCccCccc
Confidence 54432335543
No 60
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.54 E-value=0.011 Score=48.67 Aligned_cols=66 Identities=26% Similarity=0.349 Sum_probs=47.1
Q ss_pred EEEEEecC-CCcCCCccCCCCcEEEEEEeeEEEEEEEeCC-----------------------------------CcEEE
Q 041665 83 TAILQFPA-GAINPPHTHPRSAELLFVVSGILEVGFIDTT-----------------------------------NKLYT 126 (206)
Q Consensus 83 ~~~~~l~p-g~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~-----------------------------------~~~~~ 126 (206)
...+-+.+ |...++|+.+ ..-++.+++|+=++.+..++ -+..+
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 34455666 4466999987 48999999999888877442 13578
Q ss_pred EEEcCCCEEEECCCCeEEEEeCC
Q 041665 127 QTLQIGDMFVFPKGLVHYQYNSK 149 (206)
Q Consensus 127 ~~L~~GD~~~~P~g~~H~~~N~g 149 (206)
.+|++||+++||+|..|+++|..
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~ 233 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLS 233 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEEST
T ss_pred EEECCCeEEEECCCCeEEEEEcC
Confidence 99999999999999999999993
No 61
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=96.42 E-value=0.0097 Score=48.50 Aligned_cols=74 Identities=23% Similarity=0.305 Sum_probs=62.7
Q ss_pred CeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEE
Q 041665 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAIS 158 (206)
Q Consensus 79 ~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~ 158 (206)
-..+++++.+.||..+|-|+|-. -|.+.|++|. +.+++| .+.+||...-+.++-|.-.-..+. +|.+++
T Consensus 126 ds~~V~llki~~g~s~P~HtH~G-~E~t~vl~G~----~sde~G-----~y~vgD~~~~d~~v~H~piv~~~~-eClcl~ 194 (216)
T COG3806 126 DSRRVALLKIEPGRSFPDHTHVG-IERTAVLEGA----FSDENG-----EYLVGDFTLADGTVQHSPIVLPPG-ECLCLA 194 (216)
T ss_pred CCceeEEEEeccCcccccccccc-eEEEEEEeec----cccCCC-----ccccCceeecCCccccccccCCCC-CceEEE
Confidence 34689999999999999999965 9999999994 566755 588999999999999998777778 899998
Q ss_pred EecCC
Q 041665 159 AFGSA 163 (206)
Q Consensus 159 ~~~s~ 163 (206)
++..+
T Consensus 195 al~~~ 199 (216)
T COG3806 195 ALDGP 199 (216)
T ss_pred EcCCC
Confidence 87543
No 62
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=96.25 E-value=0.017 Score=49.32 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=40.2
Q ss_pred CccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 96 PHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 96 ~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
+|-+ +.-++.++++|++.+.+++. .+.+++||++++|+|.+|.+....+.
T Consensus 44 ~~~~-~~~~i~~~~~G~~~~~~~~~-----~~~~~~g~~i~i~p~~~h~~~~~~~~ 93 (290)
T PRK10572 44 PLGM-KGYILNLTIRGQGVIFNGGR-----AFVCRPGDLLLFPPGEIHHYGRHPDS 93 (290)
T ss_pred CCCc-cceEEEEEEeccEEEecCCe-----eEecCCCCEEEECCCCceeeccCCCC
Confidence 3444 34788999999999876555 89999999999999999988665443
No 63
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.16 E-value=0.018 Score=52.25 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=39.6
Q ss_pred CCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEec
Q 041665 95 PPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAFG 161 (206)
Q Consensus 95 ~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~~ 161 (206)
..-.+.+++|++++.+|++++.- +-| ...+++||.++||+|+.+++.-.+.. ...++.++.
T Consensus 139 ~~f~NaDGD~Li~~q~G~l~l~T--e~G---~L~v~pGd~~VIPRG~~~rv~l~~p~-rgyi~E~~~ 199 (424)
T PF04209_consen 139 RAFRNADGDELIFPQQGSLRLET--EFG---RLDVRPGDYVVIPRGTRFRVELPGPA-RGYIIENFG 199 (424)
T ss_dssp EEEEESSEEEEEEEEES-EEEEE--TTE---EEEE-TTEEEEE-TT--EEEE-SSSE-EEEEEEEES
T ss_pred cceEcCCCCEEEEEEECCEEEEe--cCe---eEEEcCCeEEEECCeeEEEEEeCCCc-eEEEEEcCC
Confidence 33446688999999999998864 334 57899999999999999999877433 333444443
No 64
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=96.12 E-value=0.032 Score=46.35 Aligned_cols=70 Identities=19% Similarity=0.355 Sum_probs=44.0
Q ss_pred EEEEEEecCCCcCCCccCCCCcEEEEEEe-eEEEEEEEeCC----------------CcEE------EEEEcCCCEEEEC
Q 041665 82 STAILQFPAGAINPPHTHPRSAELLFVVS-GILEVGFIDTT----------------NKLY------TQTLQIGDMFVFP 138 (206)
Q Consensus 82 ~~~~~~l~pg~~~~~H~H~~a~E~~yVl~-G~~~~~~~~~~----------------~~~~------~~~L~~GD~~~~P 138 (206)
.--.+.+.+|+..|+|.|..-.|=++.-- |.+.+.+...+ |..+ ...|+||+.+-++
T Consensus 88 AEKim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~ 167 (225)
T PF07385_consen 88 AEKIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLP 167 (225)
T ss_dssp EEEEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-
T ss_pred hhhheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeC
Confidence 33456678999999999988888777665 47766665431 3211 5689999999999
Q ss_pred CCCeEEEEeCCCC
Q 041665 139 KGLVHYQYNSKAN 151 (206)
Q Consensus 139 ~g~~H~~~N~g~~ 151 (206)
+|+.|++...+..
T Consensus 168 Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 168 PGIYHWFWGEGGD 180 (225)
T ss_dssp TTEEEEEEE-TTS
T ss_pred CCCeeeEEecCCC
Confidence 9999999976433
No 65
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=96.10 E-value=0.0064 Score=51.63 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=44.2
Q ss_pred eEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEE
Q 041665 80 SVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISA 159 (206)
Q Consensus 80 gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~ 159 (206)
++.-..+.++.|.....|+|+. .|-.|||+|++.+...+..+ ...|.+|-.+.-|.+..|... .+++ +++++.-
T Consensus 170 ~~~gll~kLPagf~g~i~~h~~-~eraVvI~G~~~~~~~~~~~---~~~L~~GSYf~s~~~~~H~~~-~~e~-~~vlyIR 243 (251)
T PF14499_consen 170 QYTGLLLKLPAGFTGRIHTHAS-NERAVVISGELDYQSYGASN---FGTLDPGSYFGSPGHITHGIF-ITED-ECVLYIR 243 (251)
T ss_dssp EE-EEEEE-SSEE--SEEE--S--EEEEEEEEEEEETTEEEET---TEEEEE-TT-EE--E-------EESS--EEEEEE
T ss_pred ceeeEEEEcCCCCcCceeccCC-ceEEEEEEeEEEEeecccCC---CccccCCcccccCCccccccc-ccCC-CEEEEEE
Confidence 3556667777777889999975 99999999999996543211 589999999999999999998 6677 7887765
Q ss_pred ec
Q 041665 160 FG 161 (206)
Q Consensus 160 ~~ 161 (206)
.+
T Consensus 244 td 245 (251)
T PF14499_consen 244 TD 245 (251)
T ss_dssp ES
T ss_pred EC
Confidence 43
No 66
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=96.09 E-value=0.021 Score=42.31 Aligned_cols=62 Identities=27% Similarity=0.415 Sum_probs=46.4
Q ss_pred CCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECC--CCeEEEEeCCC-CccEEEE
Q 041665 91 GAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPK--GLVHYQYNSKA-NQPAAAI 157 (206)
Q Consensus 91 g~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~--g~~H~~~N~g~-~~~a~~i 157 (206)
+.-.++|-|.+-+-+.||++|+++-. |..|. ..+|++||+-++-+ |+.|...|.++ . ++..+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~-~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGG-PLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS--EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCC-eEEEE
Confidence 45568999988777889999998764 44454 57899999877765 68999999888 5 66655
No 67
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=96.02 E-value=0.065 Score=48.79 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=44.5
Q ss_pred CCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEE
Q 041665 95 PPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISA 159 (206)
Q Consensus 95 ~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~ 159 (206)
..-...+++|++++.+|++.+...-. ...+++||+++||+|+.+++.-. ++ +++.+++
T Consensus 147 ~~f~NaDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~-~g-p~rgyi~ 204 (438)
T PRK05341 147 RYFYNADGELLIVPQQGRLRLATELG-----VLDVEPGEIAVIPRGVKFRVELP-DG-PARGYVC 204 (438)
T ss_pred ceeecCCCCEEEEEEeCCEEEEEecc-----ceEecCCCEEEEcCccEEEEecC-CC-CeeEEEE
Confidence 44455688999999999998875443 68999999999999999999743 34 4555443
No 68
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=95.96 E-value=0.071 Score=48.39 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=46.4
Q ss_pred CCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEec
Q 041665 95 PPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAFG 161 (206)
Q Consensus 95 ~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~~ 161 (206)
..-...++++++++.+|++.+...-. ...+++||+++||+|+.+++.-.+.. ...++.++.
T Consensus 141 ~~f~NaDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~gp~-rgyi~E~~g 201 (429)
T TIGR01015 141 RAFYNADGDFLIVPQQGALLITTEFG-----RLLVEPNEICVIPRGVRFRVTVLEPA-RGYICEVYG 201 (429)
T ss_pred ceeeccCCCEEEEEEeCcEEEEEecc-----ceEecCCCEEEecCccEEEEeeCCCc-eEEEEeccC
Confidence 34445688999999999999875443 58999999999999999999876444 444444443
No 69
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=95.91 E-value=0.036 Score=45.97 Aligned_cols=77 Identities=18% Similarity=0.156 Sum_probs=60.8
Q ss_pred CCCCCCeEEEEEEEecCCCcCCC-ccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCc
Q 041665 74 PALNGQSVSTAILQFPAGAINPP-HTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQ 152 (206)
Q Consensus 74 P~l~~~gi~~~~~~l~pg~~~~~-H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~ 152 (206)
|.--...+-+..+.++||+..|. -+|- .+--+||++|+..+.+++. ...+++||.++.-+-.+.+....|..
T Consensus 175 P~d~r~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn~d-----wv~V~aGD~mwm~A~cpQacyagG~g- 247 (264)
T COG3257 175 PKELRFDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLNNN-----WVPVEAGDYIWMGAYCPQACYAGGRG- 247 (264)
T ss_pred ccccCcceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeecCc-----eEEeecccEEEeeccChhhhccCCCC-
Confidence 43334568899999999998864 5553 2566899999999998775 79999999999999888888887776
Q ss_pred cEEEE
Q 041665 153 PAAAI 157 (206)
Q Consensus 153 ~a~~i 157 (206)
..+.+
T Consensus 248 ~frYL 252 (264)
T COG3257 248 AFRYL 252 (264)
T ss_pred ceEEE
Confidence 55544
No 70
>PF12852 Cupin_6: Cupin
Probab=95.87 E-value=0.02 Score=45.89 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=36.9
Q ss_pred cEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCC
Q 041665 103 AELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKA 150 (206)
Q Consensus 103 ~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~ 150 (206)
.-+.+|++|+..+.+.+. +. ...|++||++++|+|..|.+....+
T Consensus 36 ~~fh~V~~G~~~l~~~~~-~~--~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGG-GE--PIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred eEEEEEECCeEEEEEcCC-CC--eEEecCCCEEEEcCCCCeEeCCCCC
Confidence 677899999999987651 22 7999999999999999999965443
No 71
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=95.80 E-value=0.025 Score=46.65 Aligned_cols=62 Identities=13% Similarity=0.246 Sum_probs=52.6
Q ss_pred ecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 88 FPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 88 l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
-.|+.....|..+. +|++|=.+|.+.+.+.++ |+.+...+++||++..|+.++|+..-..++
T Consensus 40 GGPN~RkdyHieeg-eE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqRFant 101 (279)
T KOG3995|consen 40 GGPNTRKDYHIEEG-EEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQRFANT 101 (279)
T ss_pred cCCCcccccccCCc-chhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhhhccc
Confidence 45666678888876 999999999999999886 666789999999999999999987665555
No 72
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.79 E-value=0.084 Score=46.25 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=48.9
Q ss_pred EEEEEEecCCC--cCCCccCCCCcEEEEEEeeEEEEEEEeCC------------------CcEEEEEEcCCCEEEECCCC
Q 041665 82 STAILQFPAGA--INPPHTHPRSAELLFVVSGILEVGFIDTT------------------NKLYTQTLQIGDMFVFPKGL 141 (206)
Q Consensus 82 ~~~~~~l~pg~--~~~~H~H~~a~E~~yVl~G~~~~~~~~~~------------------~~~~~~~L~~GD~~~~P~g~ 141 (206)
....+.+.|++ ...+|+=.. +-+++=++|+=++.+.... ......+|++||++|+|+|.
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~~-dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDDH-DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-SS-EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECCc-ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 34445567777 678998754 7777777888888777621 12357999999999999999
Q ss_pred eEEEEeCCCCccEEEEEEecC
Q 041665 142 VHYQYNSKANQPAAAISAFGS 162 (206)
Q Consensus 142 ~H~~~N~g~~~~a~~i~~~~s 162 (206)
+|...+.+ . .+.+-..+..
T Consensus 193 ~H~~~~~~-~-S~hltv~~~~ 211 (319)
T PF08007_consen 193 WHQAVTTD-P-SLHLTVGFRA 211 (319)
T ss_dssp EEEEEESS---EEEEEEEECC
T ss_pred cCCCCCCC-C-ceEEEEeeeC
Confidence 99999988 4 4444333443
No 73
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.58 E-value=0.051 Score=39.30 Aligned_cols=73 Identities=26% Similarity=0.358 Sum_probs=33.4
Q ss_pred EEEEecCCCcCCCccCCCCc-EEEEEE---eeEEEEEEEeCC------------------CcEEEEEEcCCCEEEECCCC
Q 041665 84 AILQFPAGAINPPHTHPRSA-ELLFVV---SGILEVGFIDTT------------------NKLYTQTLQIGDMFVFPKGL 141 (206)
Q Consensus 84 ~~~~l~pg~~~~~H~H~~a~-E~~yVl---~G~~~~~~~~~~------------------~~~~~~~L~~GD~~~~P~g~ 141 (206)
+....++|+..++|.|+++. --+|-+ ++...+.+.++. ........++||+++||+.+
T Consensus 3 W~ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l 82 (101)
T PF13759_consen 3 WANIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWL 82 (101)
T ss_dssp EEEEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTS
T ss_pred eEEEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCC
Confidence 33456788888999998732 122222 111112222221 13456789999999999999
Q ss_pred eEEEEe-CCCCccEEEE
Q 041665 142 VHYQYN-SKANQPAAAI 157 (206)
Q Consensus 142 ~H~~~N-~g~~~~a~~i 157 (206)
.|+... .+++ +-+.+
T Consensus 83 ~H~v~p~~~~~-~Risi 98 (101)
T PF13759_consen 83 WHGVPPNNSDE-ERISI 98 (101)
T ss_dssp EEEE----SSS--EEEE
T ss_pred EEeccCcCCCC-CEEEE
Confidence 999854 4444 43333
No 74
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=95.54 E-value=0.049 Score=44.79 Aligned_cols=88 Identities=23% Similarity=0.330 Sum_probs=62.8
Q ss_pred CCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCC----------cEEEEE------E-cCCC-EE
Q 041665 74 PALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTN----------KLYTQT------L-QIGD-MF 135 (206)
Q Consensus 74 P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~----------~~~~~~------L-~~GD-~~ 135 (206)
+......+++..+-++||...|+|-||+-.-+.-|+.|++.+.-.+.-. +..... + .+++ .+
T Consensus 37 ~iyE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~v 116 (200)
T PF07847_consen 37 HIYEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCV 116 (200)
T ss_pred EEEECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeE
Confidence 3444556799999999999999999999888888999999987543210 111111 2 2223 55
Q ss_pred EECCC--CeEEEEeCCCCccEEEEEEecCC
Q 041665 136 VFPKG--LVHYQYNSKANQPAAAISAFGSA 163 (206)
Q Consensus 136 ~~P~g--~~H~~~N~g~~~~a~~i~~~~s~ 163 (206)
.-|.. -+|++.+.+ + ++.++-++...
T Consensus 117 L~P~~ggNiH~f~a~~-~-p~AflDIL~PP 144 (200)
T PF07847_consen 117 LYPTSGGNIHEFTALT-G-PCAFLDILAPP 144 (200)
T ss_pred EccCCCCeeEEEEeCC-C-CeEEEEEccCC
Confidence 56654 899999988 6 88888888654
No 75
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=95.48 E-value=0.11 Score=44.77 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=56.7
Q ss_pred CeEEEEEEEecCCC-c--CCCccCCCCcEEEEE---EeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCc
Q 041665 79 QSVSTAILQFPAGA-I--NPPHTHPRSAELLFV---VSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQ 152 (206)
Q Consensus 79 ~gi~~~~~~l~pg~-~--~~~H~H~~a~E~~yV---l~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~ 152 (206)
-.+-+....+.||+ . .|||.|.+..|..|- -++...+.+.++.++.+...++-+|+++.|+-.+|.-.- ..
T Consensus 173 ~qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~g--t~- 249 (276)
T PRK00924 173 CQLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGVG--TS- 249 (276)
T ss_pred ccEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCcC--cc-
Confidence 45677777788988 3 499999866775442 233333344333334345899999999999999998754 44
Q ss_pred cEEEEEEecCCC
Q 041665 153 PAAAISAFGSAS 164 (206)
Q Consensus 153 ~a~~i~~~~s~~ 164 (206)
.-.+|+....+|
T Consensus 250 ~y~fiw~m~gen 261 (276)
T PRK00924 250 NYTFIWGMAGEN 261 (276)
T ss_pred ccEEEEEecccC
Confidence 556777776665
No 76
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=95.46 E-value=0.076 Score=45.63 Aligned_cols=63 Identities=11% Similarity=0.037 Sum_probs=49.4
Q ss_pred cCCCcCCCccC-CCCcEEEEEEeeEEEEEEEeCCCc-EEEEEEcCC-CEEEECCCCeEEEEeCCCC
Q 041665 89 PAGAINPPHTH-PRSAELLFVVSGILEVGFIDTTNK-LYTQTLQIG-DMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 89 ~pg~~~~~H~H-~~a~E~~yVl~G~~~~~~~~~~~~-~~~~~L~~G-D~~~~P~g~~H~~~N~g~~ 151 (206)
-|++...+|.| ++..|.+.|++|++.+.+.+++|. .....+.+. +.-++|++..|++...++.
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d 84 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDD 84 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCC
Confidence 36677889999 678999999999999998887774 344555554 5657999999999887544
No 77
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.46 E-value=0.14 Score=46.64 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=43.3
Q ss_pred CccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEE
Q 041665 96 PHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAIS 158 (206)
Q Consensus 96 ~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~ 158 (206)
.-.+.++++++++.+|++.+...- | ...+++||+++||+|+.+++.-.+ + +++.++
T Consensus 141 ~f~NaDGD~Livpq~G~l~i~TEf--G---~L~v~pgei~VIPRG~~frv~l~~-g-p~rgyv 196 (435)
T PLN02658 141 AFCNADGDFLIVPQQGRLWIKTEL--G---KLQVSPGEIVVIPRGFRFAVDLPD-G-PSRGYV 196 (435)
T ss_pred eeecCCCCEEEEEEeCCEEEEEec--c---ceEecCCCEEEecCccEEEEecCC-C-CeeEEE
Confidence 345668899999999999886543 3 588999999999999999997433 3 444443
No 78
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=95.37 E-value=0.14 Score=41.74 Aligned_cols=71 Identities=23% Similarity=0.356 Sum_probs=45.8
Q ss_pred EEEEEEEecCCCcCCCccCCCCcEEEEEE-eeEEEEEEEeC----------------CCcEE------EEEEcCCCEEEE
Q 041665 81 VSTAILQFPAGAINPPHTHPRSAELLFVV-SGILEVGFIDT----------------TNKLY------TQTLQIGDMFVF 137 (206)
Q Consensus 81 i~~~~~~l~pg~~~~~H~H~~a~E~~yVl-~G~~~~~~~~~----------------~~~~~------~~~L~~GD~~~~ 137 (206)
..-..+.+.+|...|+|.|++..|=+.=- .|++.+++... +|+.. ...|+||+.+.+
T Consensus 86 yaeKiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL 165 (225)
T COG3822 86 YAEKIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITL 165 (225)
T ss_pred chheeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEec
Confidence 34456778899999999998544432211 23333333211 12111 468999999999
Q ss_pred CCCCeEEEEeCCCC
Q 041665 138 PKGLVHYQYNSKAN 151 (206)
Q Consensus 138 P~g~~H~~~N~g~~ 151 (206)
|+|+.|++..-+..
T Consensus 166 ~Pg~~HsFwae~g~ 179 (225)
T COG3822 166 PPGLYHSFWAEEGG 179 (225)
T ss_pred CCCceeeeeecCCc
Confidence 99999999975443
No 79
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=95.36 E-value=0.11 Score=44.46 Aligned_cols=66 Identities=15% Similarity=0.113 Sum_probs=46.7
Q ss_pred EEEEEEEecCCCcC-----CCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 81 VSTAILQFPAGAIN-----PPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 81 i~~~~~~l~pg~~~-----~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
+.+.++...+.... ..|.+.+.-.++++++|++.+...+. .+.+++||+++++++.+|.+...++.
T Consensus 45 ~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~g~-----~~~l~~G~~~l~~~~~p~~~~~~~~~ 115 (302)
T PRK09685 45 LKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQDDR-----QVQLAAGDITLIDASRPCSIYPQGLS 115 (302)
T ss_pred EEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEECCe-----EEEEcCCCEEEEECCCCcEeecCCCc
Confidence 45555555544322 23444454667788999999887655 79999999999999999988765554
No 80
>COG1741 Pirin-related protein [General function prediction only]
Probab=95.32 E-value=0.067 Score=46.11 Aligned_cols=60 Identities=25% Similarity=0.408 Sum_probs=48.9
Q ss_pred EEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECC--CCeEEEEeC
Q 041665 85 ILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPK--GLVHYQYNS 148 (206)
Q Consensus 85 ~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~--g~~H~~~N~ 148 (206)
...+.||.-+++|-|.+-+-+.||++|+++-. |..|. ...+++||+-++-+ |+.|.-.|.
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~ 109 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGN--KGVIRPGDVQWMTAGSGIVHSEMNP 109 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCc--eeeecccceeEEcCCCceeecccCC
Confidence 34588999899999998777889999998875 33344 68999999888775 589999987
No 81
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=95.05 E-value=0.13 Score=42.25 Aligned_cols=65 Identities=25% Similarity=0.339 Sum_probs=42.4
Q ss_pred EEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCC---------------------------cEEEEEEcCCCE
Q 041665 82 STAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTN---------------------------KLYTQTLQIGDM 134 (206)
Q Consensus 82 ~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~---------------------------~~~~~~L~~GD~ 134 (206)
.++....++|+....|.|+.+ +++|...+.+.+..| ......-++|++
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~-----~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~l 171 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGS-----VISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRV 171 (201)
T ss_pred eEeEEEcCCCCccCceECCCc-----eEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeE
Confidence 566677889999999999984 334433333222111 011234589999
Q ss_pred EEECCCCeEEEEe-CCCC
Q 041665 135 FVFPKGLVHYQYN-SKAN 151 (206)
Q Consensus 135 ~~~P~g~~H~~~N-~g~~ 151 (206)
++||+-+.|...- .+++
T Consensus 172 vlFPS~L~H~v~p~~~~~ 189 (201)
T TIGR02466 172 LLFESWLRHEVPPNESEE 189 (201)
T ss_pred EEECCCCceecCCCCCCC
Confidence 9999999999854 4444
No 82
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=94.92 E-value=0.33 Score=34.23 Aligned_cols=51 Identities=16% Similarity=0.003 Sum_probs=40.2
Q ss_pred CCcEEEEEEeeEEEEEEEeCCCc--EEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 101 RSAELLFVVSGILEVGFIDTTNK--LYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 101 ~a~E~~yVl~G~~~~~~~~~~~~--~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
+....+.|++|++++...+++|. .....+.+|+..+|++...|++.-.+++
T Consensus 24 GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D 76 (82)
T PF09313_consen 24 GTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDD 76 (82)
T ss_dssp TEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT
T ss_pred CeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCC
Confidence 34566789999999998887652 2478899999999999999999998875
No 83
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.88 E-value=0.39 Score=42.65 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=52.6
Q ss_pred CeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEE
Q 041665 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAIS 158 (206)
Q Consensus 79 ~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~ 158 (206)
.|+.+....+..+-....-...+.+|++++.+|++++...-. ..++++||..+||+|+.-+.+-.+.+ +..+.
T Consensus 123 ~g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te~G-----~l~v~pgeiavIPRG~~frve~~~~~--~rgy~ 195 (427)
T COG3508 123 DGVAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTELG-----VLEVEPGEIAVIPRGTTFRVELKDGE--ARGYG 195 (427)
T ss_pred CceEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEeec-----eEEecCCcEEEeeCCceEEEEecCCc--eEEEE
Confidence 344444444444333345556788999999999999876544 78999999999999999999876433 55554
Q ss_pred E
Q 041665 159 A 159 (206)
Q Consensus 159 ~ 159 (206)
+
T Consensus 196 ~ 196 (427)
T COG3508 196 C 196 (427)
T ss_pred E
Confidence 4
No 84
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=94.47 E-value=0.12 Score=40.96 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=43.5
Q ss_pred EEEEEEecCCCcCCCccCCCCcE----EEEEE-eeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEE
Q 041665 82 STAILQFPAGAINPPHTHPRSAE----LLFVV-SGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAA 156 (206)
Q Consensus 82 ~~~~~~l~pg~~~~~H~H~~a~E----~~yVl-~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~ 156 (206)
.+....+.||+.+.+|.-+.... +-+++ .+...+.+.++ .+..++|++++|.-...|...|.|++ +-++
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~~~-----~~~w~~G~~~~fD~s~~H~~~N~~~~-~Rv~ 154 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVGGE-----TRHWREGECWVFDDSFEHEVWNNGDE-DRVV 154 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEETTE-----EEB--CTEEEEE-TTS-EEEEESSSS--EEE
T ss_pred hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEECCe-----EEEeccCcEEEEeCCEEEEEEeCCCC-CEEE
Confidence 45666788999999997754222 12222 13344444333 78899999999999999999999988 5554
Q ss_pred EE
Q 041665 157 IS 158 (206)
Q Consensus 157 i~ 158 (206)
+.
T Consensus 155 L~ 156 (163)
T PF05118_consen 155 LI 156 (163)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 85
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=94.41 E-value=0.083 Score=38.37 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=22.4
Q ss_pred cEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 123 KLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 123 ~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
+.+..+.++||.+++|+|..|+..|.|..
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCce
Confidence 56689999999999999999999999876
No 86
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=93.73 E-value=0.34 Score=38.50 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=46.0
Q ss_pred EEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCC------cEEEEEEcCCCEEEECCCCeEEEEeCCCCccE
Q 041665 81 VSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTN------KLYTQTLQIGDMFVFPKGLVHYQYNSKANQPA 154 (206)
Q Consensus 81 i~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~------~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a 154 (206)
+++..+++.||...|+|-|- ..-++=|+.|.-+-.+..-.+ ....+.+.+|++- .-+|.+|++.|.+.. ..
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sd-rs 149 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSD-RS 149 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCC-cc
Confidence 58999999999999999994 588888899864433321110 0012344555544 333555666555544 33
Q ss_pred EEEEEe
Q 041665 155 AAISAF 160 (206)
Q Consensus 155 ~~i~~~ 160 (206)
..|-++
T Consensus 150 ~aiHvy 155 (191)
T COG5553 150 GAIHVY 155 (191)
T ss_pred ceEEEE
Confidence 334343
No 87
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=93.60 E-value=0.67 Score=35.53 Aligned_cols=66 Identities=14% Similarity=0.059 Sum_probs=44.4
Q ss_pred EEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 81 VSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 81 i~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
+.+.++.....-.....-+.+.--+.+.++|++.+...+. ...+.+||+++++.+.++.+...++.
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~g~-----~~~~~pg~~~l~d~~~~~~~~~~~~~ 99 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQGGR-----EVELAPGDVVLLDPGQPYRLEFSAGC 99 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEECCE-----EEEEcCCeEEEEcCCCCEEEEECCCc
Confidence 3555555443222211112334556677789988876655 89999999999999999998876554
No 88
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=93.49 E-value=0.5 Score=42.72 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=41.7
Q ss_pred eEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEE
Q 041665 80 SVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQY 146 (206)
Q Consensus 80 gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~ 146 (206)
.+.+.++++.++.. +...+..++++|++|++++...+. +..|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~~~~-----~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWKGEQ-----QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceE---EecCCCcEEEEEEcceEEEEeCCe-----EEEECCCCEEEEeCCCccEEE
Confidence 35777777755422 222245799999999999864322 688999999999998766554
No 89
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=93.22 E-value=0.34 Score=35.30 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=43.6
Q ss_pred EEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEE
Q 041665 84 AILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISA 159 (206)
Q Consensus 84 ~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~ 159 (206)
..+.++||+......-++..-++||++|++++ .++ ...+.+|+++++..|..=.+.+.+ + .++++..
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v--~~~-----~~~~~~~~~~~l~~g~~i~~~a~~-~-~a~~lll 68 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEV--GGE-----EDPLEAGQLVVLEDGDEIELTAGE-E-GARFLLL 68 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEE--TTT-----TEEEETTEEEEE-SECEEEEEESS-S-SEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEE--CCC-----cceECCCcEEEECCCceEEEEECC-C-CcEEEEE
Confidence 45778888875322222347899999999766 232 268999999999977777777764 4 5666654
No 90
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=93.17 E-value=0.95 Score=32.74 Aligned_cols=57 Identities=25% Similarity=0.166 Sum_probs=40.2
Q ss_pred EEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeC
Q 041665 86 LQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNS 148 (206)
Q Consensus 86 ~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~ 148 (206)
-.+.||. .+....+.|++-|++|++++.+.+++. ....++|+.+.+|++.--.++..
T Consensus 28 GVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~e---w~~~~aGesF~VpanssF~v~v~ 84 (94)
T PF06865_consen 28 GVMLPGE---YTFGTSAPERMEVVSGELEVKLPGEDE---WQTYSAGESFEVPANSSFDVKVK 84 (94)
T ss_dssp EEE-SEC---EEEEESS-EEEEEEESEEEEEETT-SS----EEEETT-EEEE-TTEEEEEEES
T ss_pred EEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCcc---cEEeCCCCeEEECCCCeEEEEEC
Confidence 3455665 334445699999999999999876532 68899999999999999888875
No 91
>PRK10579 hypothetical protein; Provisional
Probab=92.53 E-value=1.3 Score=32.05 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=43.1
Q ss_pred ecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeC
Q 041665 88 FPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNS 148 (206)
Q Consensus 88 l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~ 148 (206)
+.||. .+.-..+.|++-|++|++++.+.+++ .....++|+.+.+|++.--.++..
T Consensus 30 m~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~~---ew~~~~aG~sF~VpanssF~l~v~ 84 (94)
T PRK10579 30 MAEGE---YTFSTAEPEEMTVISGALNVLLPGAT---DWQVYEAGEVFNVPGHSEFHLQVA 84 (94)
T ss_pred EeeeE---EEEcCCCcEEEEEEeeEEEEECCCCc---ccEEeCCCCEEEECCCCeEEEEEC
Confidence 44554 23334469999999999999987653 268999999999999998888765
No 92
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=92.42 E-value=0.69 Score=41.27 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=53.0
Q ss_pred eEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEE
Q 041665 80 SVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISA 159 (206)
Q Consensus 80 gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~ 159 (206)
.+.+.+.++++|...-.-.- ++.-++.|++|+.++..... . ...++.||+++||+...-.+... ++ +...+-+
T Consensus 332 eF~v~~~~v~~g~~~~~~~~-~~~SIllv~~G~g~l~~~t~--~--~~~v~rG~V~fI~a~~~i~~~~~-sd-~~~~yrA 404 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGV-DGPSILLVLKGSGILKTDTD--S--KILVNRGDVLFIPANHPIHLSSS-SD-PFLGYRA 404 (411)
T ss_pred ceeEEEeecCCCceEEeecC-CCceEEEEEecceEEecCCC--C--ceeeccCcEEEEcCCCCceeecc-Cc-ceeeeec
Confidence 46888888888776433333 35889999999999986621 2 78999999999999987665443 34 4555544
Q ss_pred e
Q 041665 160 F 160 (206)
Q Consensus 160 ~ 160 (206)
+
T Consensus 405 f 405 (411)
T KOG2757|consen 405 F 405 (411)
T ss_pred c
Confidence 4
No 93
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=92.26 E-value=1.2 Score=38.74 Aligned_cols=61 Identities=21% Similarity=0.176 Sum_probs=43.1
Q ss_pred CCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEE
Q 041665 78 GQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQY 146 (206)
Q Consensus 78 ~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~ 146 (206)
...+.+.++++...... ..+ ++..+++|++|++++...+. +..|++|+.+++|++......
T Consensus 232 ~~~F~~~~~~~~~~~~~--~~~-~~~~il~v~~G~~~i~~~~~-----~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 232 TEYFSVYKWDISGKAEF--IQQ-QSALILSVLEGSGRIKSGGK-----TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CCCeEEEEEEeCCceee--ccC-CCcEEEEEEcceEEEEECCE-----EEEEecccEEEEccCCccEEE
Confidence 34567788887643211 123 45889999999999864332 688999999999999855444
No 94
>PLN02288 mannose-6-phosphate isomerase
Probab=92.22 E-value=0.44 Score=43.17 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=41.4
Q ss_pred CeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCC
Q 041665 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGL 141 (206)
Q Consensus 79 ~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~ 141 (206)
..+++.++++.++.......+ ++.++++|++|++++..... . .+..|++|+++++|++.
T Consensus 332 ~eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~~~~--~-~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 332 DEFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLSTGSS--E-DGTAAKRGDVFFVPAGT 390 (394)
T ss_pred cceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEecCCc--c-ceEEEeceeEEEEeCCC
Confidence 357888888887764322223 35899999999999853322 1 13669999999999864
No 95
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=91.91 E-value=3.6 Score=31.81 Aligned_cols=77 Identities=21% Similarity=0.240 Sum_probs=54.7
Q ss_pred EEEEEEEecCCCcCCCccCCCCcEEEEEEee-EEEEEEEeCCCcEEEEEEcC----CC--EEEECCCCeEEEEeCCCCcc
Q 041665 81 VSTAILQFPAGAINPPHTHPRSAELLFVVSG-ILEVGFIDTTNKLYTQTLQI----GD--MFVFPKGLVHYQYNSKANQP 153 (206)
Q Consensus 81 i~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G-~~~~~~~~~~~~~~~~~L~~----GD--~~~~P~g~~H~~~N~g~~~~ 153 (206)
.+....-+.++....+|.= +++|+.+...| .+++.+.+++|+.....|.. |+ .++||+|.....+..+.. .
T Consensus 41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~-~ 118 (139)
T PF06172_consen 41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEG-D 118 (139)
T ss_dssp -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESS-S
T ss_pred ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCC-C
Confidence 3555555777777677765 67999999998 78999999988877777744 44 789999999988655445 4
Q ss_pred EEEEEE
Q 041665 154 AAAISA 159 (206)
Q Consensus 154 a~~i~~ 159 (206)
-.++++
T Consensus 119 y~Lvsc 124 (139)
T PF06172_consen 119 YSLVSC 124 (139)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555544
No 96
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.88 E-value=0.11 Score=47.88 Aligned_cols=60 Identities=25% Similarity=0.433 Sum_probs=44.6
Q ss_pred cCCCc-CCCccCCCCcEEEEEEeeEEEEEEEeCC-------------------Cc-EEEEEEcCCCEEEECCCCeEEEEe
Q 041665 89 PAGAI-NPPHTHPRSAELLFVVSGILEVGFIDTT-------------------NK-LYTQTLQIGDMFVFPKGLVHYQYN 147 (206)
Q Consensus 89 ~pg~~-~~~H~H~~a~E~~yVl~G~~~~~~~~~~-------------------~~-~~~~~L~~GD~~~~P~g~~H~~~N 147 (206)
+||.. .+|||-. -+-+++=++|+=.+.+..+. |+ +....|++||++|||+|.+|....
T Consensus 325 PagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 325 PAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred CCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 44443 5999984 36677778999877776542 33 346789999999999999999876
Q ss_pred CC
Q 041665 148 SK 149 (206)
Q Consensus 148 ~g 149 (206)
..
T Consensus 404 ~~ 405 (629)
T KOG3706|consen 404 PA 405 (629)
T ss_pred cc
Confidence 54
No 97
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=90.26 E-value=0.72 Score=41.21 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=46.6
Q ss_pred EecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCC-----------------cEEEEEEcCCCEEEECCCCeEEEEeCC
Q 041665 87 QFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTN-----------------KLYTQTLQIGDMFVFPKGLVHYQYNSK 149 (206)
Q Consensus 87 ~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~-----------------~~~~~~L~~GD~~~~P~g~~H~~~N~g 149 (206)
-..+||.+.+|+-+. +-+++=..|+=+..+....+ -....++.+||+.|+|+|.+|+-...+
T Consensus 125 ~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae~ 203 (383)
T COG2850 125 FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAED 203 (383)
T ss_pred EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcccc
Confidence 467899999999976 76666666666666654311 112458999999999999999998764
Q ss_pred CC
Q 041665 150 AN 151 (206)
Q Consensus 150 ~~ 151 (206)
+.
T Consensus 204 dc 205 (383)
T COG2850 204 DC 205 (383)
T ss_pred cc
Confidence 33
No 98
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=89.54 E-value=7.2 Score=33.34 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=50.1
Q ss_pred EEEEeeccccCCCCCCeEEEEEEEecCCCc--CCCccCCCC--------cEEEEEE----eeEEEEEEEeCCC-cEEEEE
Q 041665 64 RVSKASMAEFPALNGQSVSTAILQFPAGAI--NPPHTHPRS--------AELLFVV----SGILEVGFIDTTN-KLYTQT 128 (206)
Q Consensus 64 ~v~~~~~~~~P~l~~~gi~~~~~~l~pg~~--~~~H~H~~a--------~E~~yVl----~G~~~~~~~~~~~-~~~~~~ 128 (206)
.|......+.+ ..-.+-+..+.-++|.. .|||.|.+. +|+.|-- +|-+...+...+. .-..+.
T Consensus 136 ~V~~~i~~~~~--~~~~Lv~get~~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~~ 213 (261)
T PF04962_consen 136 TVRNIIDPNVP--PASRLVVGETITPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHYV 213 (261)
T ss_dssp EEEEEESTTT-----SS-EEEEEEETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEEE
T ss_pred EEEEeeCCCCc--ccceEEEEEEEeCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEEE
Confidence 34444444444 23456677766445544 399999762 4555442 2433333333222 234789
Q ss_pred EcCCCEEEECCCCeEEEEe-CCCCccEEEEEEecCCC
Q 041665 129 LQIGDMFVFPKGLVHYQYN-SKANQPAAAISAFGSAS 164 (206)
Q Consensus 129 L~~GD~~~~P~g~~H~~~N-~g~~~~a~~i~~~~s~~ 164 (206)
++-||++.+|+| .|-+.. .|.. ..++.+....+
T Consensus 214 V~~~d~V~iP~g-yHp~~aapGy~--~Yylw~maG~~ 247 (261)
T PF04962_consen 214 VRNGDAVLIPSG-YHPVVAAPGYD--MYYLWVMAGEN 247 (261)
T ss_dssp EETTEEEEESTT-B-SEEEEEESS--EEEEEEEESSS
T ss_pred EECCCEEEeCCC-CCCcCcCCCcC--cEEEEEEEcCC
Confidence 999999999999 443333 3433 55777776665
No 99
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=89.45 E-value=2.1 Score=28.52 Aligned_cols=57 Identities=18% Similarity=0.074 Sum_probs=41.6
Q ss_pred EEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEe
Q 041665 86 LQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYN 147 (206)
Q Consensus 86 ~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N 147 (206)
+++.||....++... ...+.|.+|++-++..+ ...-+.|++||.+.+++|..-.++.
T Consensus 2 ~~L~~g~~~~lr~~~--~~~l~v~~G~vWlT~~g---~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAA--GQRLRVESGRVWLTREG---DPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCC--CcEEEEccccEEEECCC---CCCCEEECCCCEEEeCCCCEEEEEe
Confidence 456777777666553 44499999998877543 2337999999999999997766654
No 100
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=89.12 E-value=4 Score=32.59 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=37.8
Q ss_pred EEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCc-EEEEEEcCCCEEEE
Q 041665 84 AILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNK-LYTQTLQIGDMFVF 137 (206)
Q Consensus 84 ~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~-~~~~~L~~GD~~~~ 137 (206)
....+++|...-..-.+ ...+++|++|.+++...+.+|+ .....+.+||++-.
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 45567777765333233 4789999999999987777664 45567899998743
No 101
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=89.04 E-value=4.2 Score=33.47 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=50.6
Q ss_pred eEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcE-EEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEE
Q 041665 80 SVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKL-YTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAIS 158 (206)
Q Consensus 80 gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~-~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~ 158 (206)
+.......+++|...-..-. ....+.+|++|.+.+...+++|+. ....+.+||++-+..+..+.....-.+ +++++.
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd-~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~-ds~v~~ 112 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGE-PADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIV-DTTVRL 112 (230)
T ss_pred cceeeeEEECCCCEEECCCC-CCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcC-ceEEEE
Confidence 34666777888876533323 347889999999999988877753 455678999887666554433333334 455443
No 102
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=89.04 E-value=2.7 Score=36.92 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=42.2
Q ss_pred CeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEE
Q 041665 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHY 144 (206)
Q Consensus 79 ~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~ 144 (206)
..+++.++++..-... .+ + ++..+++|++|++++...++ +..|++|+.+++|+...-+
T Consensus 240 ~~F~l~~~~i~~~~~~-~~-~-~~~~il~v~eG~~~l~~~~~-----~~~l~~G~s~~ipa~~~~~ 297 (312)
T COG1482 240 EDFALYKWDISGTAEF-IK-Q-ESFSILLVLEGEGTLIGGGQ-----TLKLKKGESFFIPANDGPY 297 (312)
T ss_pred cceEEEEEeccChhhh-cc-C-CCcEEEEEEcCeEEEecCCE-----EEEEcCCcEEEEEcCCCcE
Confidence 3467777777651211 12 2 25999999999999976644 8999999999999995433
No 103
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=86.92 E-value=2 Score=28.90 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=33.6
Q ss_pred EecCCCcC-CCccCCCCcEEEEEEeeEEEEEEEeCCCcE-EEEEEcCCCEE
Q 041665 87 QFPAGAIN-PPHTHPRSAELLFVVSGILEVGFIDTTNKL-YTQTLQIGDMF 135 (206)
Q Consensus 87 ~l~pg~~~-~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~-~~~~L~~GD~~ 135 (206)
++++|... ..+- ....+++|++|.+.+...+.+++. ....+.+||++
T Consensus 3 ~~~~g~~i~~~g~--~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGD--PCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTS--BESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCC--cCCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 45555543 2332 258999999999999988877753 46788888875
No 104
>PHA02984 hypothetical protein; Provisional
Probab=85.59 E-value=5.4 Score=34.23 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=42.7
Q ss_pred cEEE--EEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEE-EEecCCCc
Q 041665 103 AELL--FVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAI-SAFGSASA 165 (206)
Q Consensus 103 ~E~~--yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i-~~~~s~~p 165 (206)
.|.+ .+++|+.++..... ++..+..+++||.+.+.-+.-|...... . ...++ ..+...-|
T Consensus 92 nEy~FvlCl~G~~~I~~~~~-~~~is~~I~kGeaf~md~~t~h~i~T~~-k-nl~L~Vi~y~v~~p 154 (286)
T PHA02984 92 NEYMFVLCLNGKTSIECFNK-GSKITNTIKKGEAFTLNLKTKYVTTTKD-K-NLHLAVITYTSNCP 154 (286)
T ss_pred ccEEEEEEcCCeEEEEEecC-CceeeeEEecCceEEEEccceEEEEeCC-C-ceEEEEEEEEecce
Confidence 4544 46789999987764 5667999999999999999999997543 3 33433 34444433
No 105
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=84.66 E-value=4.9 Score=31.88 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=36.2
Q ss_pred EEEecCCCcCCCccCC-CCcEEEEEEeeEEEEEEEeCCCcE-EEEEEcCCCEEEEC
Q 041665 85 ILQFPAGAINPPHTHP-RSAELLFVVSGILEVGFIDTTNKL-YTQTLQIGDMFVFP 138 (206)
Q Consensus 85 ~~~l~pg~~~~~H~H~-~a~E~~yVl~G~~~~~~~~~~~~~-~~~~L~~GD~~~~P 138 (206)
...+++|...-..--+ ....+++|++|.+++...+.+|+. ....+.+||++=.+
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 3456666654222111 247799999999999988888864 55666999987543
No 106
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.42 E-value=4.3 Score=28.78 Aligned_cols=44 Identities=25% Similarity=0.205 Sum_probs=36.0
Q ss_pred CCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEe
Q 041665 101 RSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYN 147 (206)
Q Consensus 101 ~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N 147 (206)
.+.|.+-|+.|.+++.+.+.+ ..++..+|+.+.+|.+.-..++-
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs~---dWq~~~~Ge~F~VpgnS~F~lqV 83 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGSD---DWQVYTAGEVFNVPGNSEFDLQV 83 (94)
T ss_pred CCceEEEEEeeEEEEEcCCCc---ccEEecCCceEEcCCCCeEEEEE
Confidence 458999999999999876543 37899999999999987766554
No 107
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=84.24 E-value=6.9 Score=33.80 Aligned_cols=52 Identities=23% Similarity=0.160 Sum_probs=38.0
Q ss_pred cE-EEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEe--CCCCccEEEEEEe
Q 041665 103 AE-LLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYN--SKANQPAAAISAF 160 (206)
Q Consensus 103 ~E-~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N--~g~~~~a~~i~~~ 160 (206)
.| .++.+.|++++.+.++ ++.+.+.|.+|+|.|..-.... .... +++++..-
T Consensus 74 rE~giV~lgG~~~V~vdG~-----~~~l~~~d~LYVp~G~~~v~~as~~a~~-paef~i~s 128 (276)
T PRK00924 74 RELGIINIGGAGTVTVDGE-----TYELGHRDALYVGKGAKEVVFASADAAN-PAKFYLNS 128 (276)
T ss_pred cEEEEEEccceEEEEECCE-----EEecCCCcEEEECCCCcEEEEEecCCCC-CcEEEEEc
Confidence 55 5667789999997665 7889999999999997755543 2235 67766543
No 108
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=83.59 E-value=3.6 Score=35.18 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=43.4
Q ss_pred EEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCC--------CEEEECCCCeEEEEeCCCC
Q 041665 82 STAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIG--------DMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 82 ~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~G--------D~~~~P~g~~H~~~N~g~~ 151 (206)
.+..++|++|.....-.- +.+-.++.++|++++.+.+. + .+.+... |++++|.|..-.+.+.++.
T Consensus 28 ~~~~l~L~~g~~~~~~~~-~~E~~vv~l~G~~~v~~~g~--~--~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~a 100 (261)
T PF04962_consen 28 GFGVLRLEAGESLEFELE-RRELGVVNLGGKATVTVDGE--E--FYELGGRESVFDGPPDALYVPRGTKVVIFASTDA 100 (261)
T ss_dssp ECCCEEEECCHCCCCCCC-SEEEEEEEESSSEEEEETTE--E--EEEE-TTSSGGGS--EEEEE-TT--EEEEESSTE
T ss_pred ceEEEEecCCCEEeccCC-CcEEEEEEeCCEEEEEeCCc--e--EEEecccccccCCCCcEEEeCCCCeEEEEEcCCC
Confidence 456677888887655443 33556667899999987541 1 6778887 9999999999888885443
No 109
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=81.12 E-value=6.7 Score=26.94 Aligned_cols=53 Identities=28% Similarity=0.342 Sum_probs=35.9
Q ss_pred EEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCc-EEEEEEcCCCEEEE
Q 041665 84 AILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNK-LYTQTLQIGDMFVF 137 (206)
Q Consensus 84 ~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~-~~~~~L~~GD~~~~ 137 (206)
....+.+|...-.. ......+.+|++|.+.+...+++|+ .....+.+|+.+-.
T Consensus 18 ~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 34456777755222 1234789999999999988877663 45667888887633
No 110
>PHA02890 hypothetical protein; Provisional
Probab=80.96 E-value=14 Score=31.52 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=36.6
Q ss_pred cEEEE--EEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEe
Q 041665 103 AELLF--VVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYN 147 (206)
Q Consensus 103 ~E~~y--Vl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N 147 (206)
.|.+| +++|+.++.+... ++..+..+++||.+.+.-+.-|....
T Consensus 91 nEy~FVlCL~Gs~~In~~~~-d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 91 IECFFVACIEGSCKINVNIG-DREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred ccEEEEEEeCCeEEEEEecC-CceeeeeeecCceEEEEccceEEEEc
Confidence 45554 6789999987653 56779999999999999999999976
No 111
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=80.76 E-value=18 Score=28.14 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=39.6
Q ss_pred CCccCCCCcEEEEEEeeEEEEEEEeCC------------------CcEEEEEEcCCCEEEECCCCeEEEE
Q 041665 95 PPHTHPRSAELLFVVSGILEVGFIDTT------------------NKLYTQTLQIGDMFVFPKGLVHYQY 146 (206)
Q Consensus 95 ~~H~H~~a~E~~yVl~G~~~~~~~~~~------------------~~~~~~~L~~GD~~~~P~g~~H~~~ 146 (206)
.+-.|.+-..+-|+++|+-.+++.... +......|++|+.++|.++..|+..
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 445566779999999999888876431 2222678999999999999999886
No 112
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=80.69 E-value=2.8 Score=36.92 Aligned_cols=45 Identities=16% Similarity=0.078 Sum_probs=33.3
Q ss_pred CcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEecCCCcce
Q 041665 122 NKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAFGSASAGT 167 (206)
Q Consensus 122 ~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~~s~~pg~ 167 (206)
.+..+...++|+.+++|.|..|-+.|...+ -|+.--..+..|.+.
T Consensus 260 ~kPIEc~q~pGEt~fVP~GWWHvVlNle~T-IAiTqNf~s~eNf~~ 304 (407)
T KOG2130|consen 260 YKPIECLQKPGETMFVPSGWWHVVLNLEPT-IAITQNFASKENFPF 304 (407)
T ss_pred cCCceeeecCCceEEecCCeEEEEeccCce-eeeeeccccccCCce
Confidence 356788999999999999999999998777 444333334445443
No 113
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=80.49 E-value=11 Score=25.94 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=36.3
Q ss_pred EEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCC-cEEEEEEcCCCEEEE
Q 041665 84 AILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTN-KLYTQTLQIGDMFVF 137 (206)
Q Consensus 84 ~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~-~~~~~~L~~GD~~~~ 137 (206)
....+.+|... .+.......+.+|++|.+.+...+.+| ......+.+||.+-.
T Consensus 18 ~~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (120)
T smart00100 18 EPVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGE 71 (120)
T ss_pred eEEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceech
Confidence 34556777754 223334588999999999988765555 345778889987644
No 114
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=79.11 E-value=7 Score=33.86 Aligned_cols=45 Identities=9% Similarity=0.024 Sum_probs=37.5
Q ss_pred cEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 103 AELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 103 ~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
.-++++.+|.+++...+ |. ...+.++..+++|++..|.+.|...+
T Consensus 39 ~~li~v~~G~~~i~~~~--g~--~l~i~~p~~~~~p~~~~~~~~~~~~~ 83 (291)
T PRK15186 39 SVLIKLTTGKISITTSS--GE--YITASGPMLIFLAKDQTIHITMEETH 83 (291)
T ss_pred eEEEEeccceEEEEeCC--Cc--eEEeCCCeEEEEeCCcEEEEEecccC
Confidence 66889999999886543 22 58999999999999999999998654
No 115
>PLN02868 acyl-CoA thioesterase family protein
Probab=78.98 E-value=7.9 Score=34.98 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=38.4
Q ss_pred EEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEE
Q 041665 84 AILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVF 137 (206)
Q Consensus 84 ~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~ 137 (206)
...++++|..+-.--. ....+++|++|++++...+.+|+.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd-~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGE-PGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCC-cCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 3456677776522222 3478999999999998877777666778899998763
No 116
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=78.91 E-value=15 Score=29.16 Aligned_cols=64 Identities=8% Similarity=0.044 Sum_probs=48.0
Q ss_pred CCccCCCCcEEEEEEeeEEEEEEEeCC-----CcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEE
Q 041665 95 PPHTHPRSAELLFVVSGILEVGFIDTT-----NKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISA 159 (206)
Q Consensus 95 ~~H~H~~a~E~~yVl~G~~~~~~~~~~-----~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~ 159 (206)
.+-.|+..+|.++-+.|+..+-++..+ ++.+.+....|+.+..-+|++|...-.=+. +..++++
T Consensus 72 ~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~-~~dF~vv 140 (162)
T PRK03606 72 MLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGE-VSDFLVV 140 (162)
T ss_pred eEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCC-CceEEEE
Confidence 345678789999999999887777653 256789999999999999999977543344 4555444
No 117
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=75.78 E-value=9.6 Score=31.13 Aligned_cols=52 Identities=10% Similarity=0.039 Sum_probs=36.6
Q ss_pred EEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCc-EEEEEEcCCCEEEE
Q 041665 85 ILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNK-LYTQTLQIGDMFVF 137 (206)
Q Consensus 85 ~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~-~~~~~L~~GD~~~~ 137 (206)
...+++|...-.. ......+.+|++|.+++...+.+|+ .....+.+||++-.
T Consensus 33 ~~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 33 LFHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGE 85 (226)
T ss_pred heeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEe
Confidence 3456666654222 2234789999999999998888885 34567889998764
No 118
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=75.16 E-value=17 Score=28.70 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=38.4
Q ss_pred CccCCCCcEEEEEEeeEE-EEEEEeCC------CcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEe
Q 041665 96 PHTHPRSAELLFVVSGIL-EVGFIDTT------NKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAF 160 (206)
Q Consensus 96 ~H~H~~a~E~~yVl~G~~-~~~~~~~~------~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~ 160 (206)
+-.|+...|.++-+.|+. .+-++..+ .+.+.+.+..|+.+.+.+|++|...-.-++ ++.++.+-
T Consensus 74 lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~-~~~f~vv~ 144 (165)
T PF04115_consen 74 LERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDE-PADFLVVD 144 (165)
T ss_dssp EEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSS-EEEEEEEE
T ss_pred eccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCC-cceEEEEe
Confidence 345777899999999987 44444322 356789999999999999999987554445 66666653
No 119
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=74.55 E-value=3.8 Score=36.72 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=44.6
Q ss_pred CCCcCCCc---cCCCCcEEEEEEeeEEEEEEEeCC-------------------------CcEEEEEEcCCCEEEECCCC
Q 041665 90 AGAINPPH---THPRSAELLFVVSGILEVGFIDTT-------------------------NKLYTQTLQIGDMFVFPKGL 141 (206)
Q Consensus 90 pg~~~~~H---~H~~a~E~~yVl~G~~~~~~~~~~-------------------------~~~~~~~L~~GD~~~~P~g~ 141 (206)
.|...|.| +| +.-+-..+-|+=+.-+..+. +...+..-++|+++++|+|.
T Consensus 207 ~gSwtp~HaDVf~--s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW 284 (427)
T KOG2131|consen 207 AGSWTPFHADVFH--SPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGW 284 (427)
T ss_pred CCCCCccchhhhc--CCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCcc
Confidence 45567888 77 35667777887766655432 23345566899999999999
Q ss_pred eEEEEeCCCC
Q 041665 142 VHYQYNSKAN 151 (206)
Q Consensus 142 ~H~~~N~g~~ 151 (206)
-|+..|.+++
T Consensus 285 ~hQV~NL~dT 294 (427)
T KOG2131|consen 285 HHQVLNLGDT 294 (427)
T ss_pred ccccccccce
Confidence 9999999988
No 120
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=74.43 E-value=27 Score=29.59 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=56.2
Q ss_pred eEEEEeeccccCCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCC----C-cEEEEEEcCCCEEEE
Q 041665 63 FRVSKASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTT----N-KLYTQTLQIGDMFVF 137 (206)
Q Consensus 63 ~~v~~~~~~~~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~----~-~~~~~~L~~GD~~~~ 137 (206)
+.+..++..+ +++.- +.+..++|.+|.....-.-.+ +-++.+++|++++.-.+.. | |.-.++=++-|++++
T Consensus 14 g~v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~~~~-E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYv 89 (270)
T COG3718 14 GLVQDVTPES-AGWEY--VGFRLLRLAAGESATEETGDR-ERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYV 89 (270)
T ss_pred cceEEecCCC-CCcee--EEEEEEEccCCCcccccCCCc-eEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEe
Confidence 3444444333 34432 355666788999876665543 6677788999999865542 3 322444556799999
Q ss_pred CCCCeEEEEeCCCC
Q 041665 138 PKGLVHYQYNSKAN 151 (206)
Q Consensus 138 P~g~~H~~~N~g~~ 151 (206)
|.|..-.+...++.
T Consensus 90 p~g~~~~vtA~t~~ 103 (270)
T COG3718 90 PAGSAFSVTATTDL 103 (270)
T ss_pred cCCceEEEEeecce
Confidence 99999998887654
No 121
>PHA00672 hypothetical protein
Probab=74.40 E-value=25 Score=26.96 Aligned_cols=66 Identities=14% Similarity=0.058 Sum_probs=53.3
Q ss_pred CeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 79 QSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 79 ~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
.|+....+.++.|....--.|. -+-+++.+|.+++..+++ ...|+.-.++.-|+|.-.......|+
T Consensus 45 ~GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~tdge-----~~rl~g~~~i~~~aG~KragyAHeDT 110 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIGGE-----AVELRGYHVIPASAGRKQAFVAHADT 110 (152)
T ss_pred cceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeCCc-----EEEEecceeeecCCCcccceeeeccc
Confidence 4788899999999987666663 444599999999987765 78899999999999988877776666
No 122
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=74.13 E-value=19 Score=28.43 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=42.5
Q ss_pred CCCccCCCCcEEEEEEeeEEEEEEEeCC------------------C--cEEEEEEcCCCEEEECCCCeEEEEeCCC
Q 041665 94 NPPHTHPRSAELLFVVSGILEVGFIDTT------------------N--KLYTQTLQIGDMFVFPKGLVHYQYNSKA 150 (206)
Q Consensus 94 ~~~H~H~~a~E~~yVl~G~~~~~~~~~~------------------~--~~~~~~L~~GD~~~~P~g~~H~~~N~g~ 150 (206)
..+-.|.+-..+-++++|+=.+++.... + .....+|.+|+.++|-+|.+|+.....+
T Consensus 61 ~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 61 KKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred cchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 3444556679999999999777766432 1 1347889999999999999998866554
No 123
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=72.83 E-value=43 Score=29.48 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=46.1
Q ss_pred CCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEecC
Q 041665 95 PPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAFGS 162 (206)
Q Consensus 95 ~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~~s 162 (206)
..-+..+.+=++.-.+|.+.+. ++-| ...+.++++.+||+|+...+.-.|.. ...++.++..
T Consensus 148 safyNsDGDFLiVPQ~G~L~I~--TEfG---rllV~P~EI~VIpqG~RFsi~v~~~s-RGYilEvYg~ 209 (446)
T KOG1417|consen 148 SAFYNSDGDFLIVPQQGRLWIT--TEFG---RLLVTPNEIAVIPQGIRFSIDVPGPS-RGYILEVYGA 209 (446)
T ss_pred ceeecCCCCEEEecccCcEEEE--eecc---ceeecccceEEeecccEEEEecCCCC-cceEEEEecc
Confidence 4455556565666667777664 3344 47899999999999999999888888 7888888753
No 124
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=72.35 E-value=23 Score=27.12 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=20.3
Q ss_pred cCCCccCCCCcEEEEEEeeEEEEEEE
Q 041665 93 INPPHTHPRSAELLFVVSGILEVGFI 118 (206)
Q Consensus 93 ~~~~H~H~~a~E~~yVl~G~~~~~~~ 118 (206)
...+-.|.+-..+-|+++|+=++++.
T Consensus 60 ~~~~E~Hr~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 60 SKKAELHHRYLDIQLLLRGEENIEVG 85 (142)
T ss_pred hcchhhhhheEEEEEeecceEEEEEe
Confidence 34555666679999999999888875
No 125
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=71.67 E-value=2.2 Score=36.98 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=18.4
Q ss_pred EEEEcCCCEEEECCCCeEEE
Q 041665 126 TQTLQIGDMFVFPKGLVHYQ 145 (206)
Q Consensus 126 ~~~L~~GD~~~~P~g~~H~~ 145 (206)
...+++||++++|+|.+|..
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred ccccCCCCEEEeCCCCcccc
Confidence 67899999999999999983
No 126
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=71.64 E-value=3.6 Score=36.14 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEEcCCCEEEECCCCeEEEEe
Q 041665 125 YTQTLQIGDMFVFPKGLVHYQYN 147 (206)
Q Consensus 125 ~~~~L~~GD~~~~P~g~~H~~~N 147 (206)
....|++||.+++|+|.+|.+..
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~~~ 180 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAYLK 180 (312)
T ss_pred cEEecCCCCEEEecCCCceeecc
Confidence 36899999999999999998853
No 127
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=70.14 E-value=4.7 Score=29.15 Aligned_cols=13 Identities=31% Similarity=0.306 Sum_probs=8.7
Q ss_pred CchhhHHHHHHHH
Q 041665 1 MASTNIFKSLIFL 13 (206)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (206)
|+|..++++.++|
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 8988877654443
No 128
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=69.95 E-value=40 Score=27.30 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=33.8
Q ss_pred EecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcE-EEEEEcCCCEEEE
Q 041665 87 QFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKL-YTQTLQIGDMFVF 137 (206)
Q Consensus 87 ~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~-~~~~L~~GD~~~~ 137 (206)
++++|...-.- -.....+.+|++|.+++...+++|+. ....+.+||++-.
T Consensus 41 ~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 41 PIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eecCCCEeECC-CCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 45566543222 12347789999999999988877754 4445589998753
No 129
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=69.50 E-value=27 Score=29.63 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=60.9
Q ss_pred CCCCeEEEEEEEecCCCc---CCCccCCCCcEEEEEE---eeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCC
Q 041665 76 LNGQSVSTAILQFPAGAI---NPPHTHPRSAELLFVV---SGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSK 149 (206)
Q Consensus 76 l~~~gi~~~~~~l~pg~~---~~~H~H~~a~E~~yVl---~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g 149 (206)
+++-.+.+....++||.. .|+|.|.+..|..+-. +-+-.+.+-++.++.+...++--+.++-|+-.+|.-. |
T Consensus 172 ~~scQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP~ETRHiv~~NEqAViSP~WSIHSG~--G 249 (278)
T COG3717 172 LESCQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQPQETRHIVMHNEQAVISPPWSIHSGV--G 249 (278)
T ss_pred hhhhhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCCCceeEEEEeccceeeCCCceeecCc--c
Confidence 344456788888999985 3999999988876543 2333445555555555778888889999999999874 4
Q ss_pred CCccEEEEEEecCCCc
Q 041665 150 ANQPAAAISAFGSASA 165 (206)
Q Consensus 150 ~~~~a~~i~~~~s~~p 165 (206)
.. .-.+|++...+|-
T Consensus 250 T~-~YtFIWaMaGeN~ 264 (278)
T COG3717 250 TA-NYTFIWAMAGENQ 264 (278)
T ss_pred cc-ceEEEEEeccccc
Confidence 45 5677777766654
No 130
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=68.85 E-value=4.7 Score=36.47 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=20.2
Q ss_pred EEEEEcCCCEEEECCCCeEEEEe
Q 041665 125 YTQTLQIGDMFVFPKGLVHYQYN 147 (206)
Q Consensus 125 ~~~~L~~GD~~~~P~g~~H~~~N 147 (206)
-...|++||++++|+|.+|.+..
T Consensus 237 N~v~l~pGeaifipAg~~HAyl~ 259 (389)
T PRK15131 237 NVVKLNPGEAMFLFAETPHAYLQ 259 (389)
T ss_pred eEEEeCCCCEEEeCCCCCeEEcC
Confidence 36799999999999999998853
No 131
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=67.03 E-value=25 Score=27.34 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=37.7
Q ss_pred EEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcE-EEEEEcCCCEEEECC
Q 041665 83 TAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKL-YTQTLQIGDMFVFPK 139 (206)
Q Consensus 83 ~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~-~~~~L~~GD~~~~P~ 139 (206)
.....+++|...-..--+ +.-+.+|++|.+.+....++|+. ....+.+||.+-...
T Consensus 23 ~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 23 LEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELA 79 (214)
T ss_pred ceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHH
Confidence 344455666544333333 35588999999999999888753 455688999876664
No 132
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=66.48 E-value=35 Score=26.36 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=34.0
Q ss_pred cCCCccCCCCcEEEEEEeeEEEEEEEe-CC-------------------C-cEEEEEEcCCCEEEECCCCeEEEE
Q 041665 93 INPPHTHPRSAELLFVVSGILEVGFID-TT-------------------N-KLYTQTLQIGDMFVFPKGLVHYQY 146 (206)
Q Consensus 93 ~~~~H~H~~a~E~~yVl~G~~~~~~~~-~~-------------------~-~~~~~~L~~GD~~~~P~g~~H~~~ 146 (206)
-..+-.|.+-..+-|+++|+=++++.. .. + ......|++|+.++|-++.+|+..
T Consensus 60 ~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 60 ERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp GS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred ccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 345667777899999999998888832 11 2 122567999999999999999964
No 133
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.40 E-value=3.4 Score=34.33 Aligned_cols=41 Identities=24% Similarity=0.373 Sum_probs=35.8
Q ss_pred CCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEE
Q 041665 78 GQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFI 118 (206)
Q Consensus 78 ~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~ 118 (206)
.-++++..+-++|++.+|.|-||+-.-+.-++=|++.+.-.
T Consensus 72 cD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksy 112 (236)
T KOG4281|consen 72 CDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSY 112 (236)
T ss_pred cCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeec
Confidence 44679999999999999999999988888899999988644
No 134
>COG3615 TehB Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=64.77 E-value=38 Score=24.61 Aligned_cols=49 Identities=14% Similarity=-0.000 Sum_probs=34.2
Q ss_pred cEEEEEEeeEEEEEEEeCCCc--EEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 103 AELLFVVSGILEVGFIDTTNK--LYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 103 ~E~~yVl~G~~~~~~~~~~~~--~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
---+-|++|.+.+.-.++.|. ....-.-.++.-++|+-..|+++..+|+
T Consensus 37 w~kLsVl~G~vk~~~~~ee~~~~~e~~~~~ea~~~~~~PQ~WHrVea~tDD 87 (99)
T COG3615 37 WGKLSVLKGAVKFLGLAEEGETEPEHVFSIEAQFPVFPPQAWHRVEAMTDD 87 (99)
T ss_pred eeEEEEEeceeEEEEEcCCCCccceEEEeecCCCCccChhHeeeeeecccc
Confidence 334679999999876666552 2233333447888999999999977665
No 135
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=62.94 E-value=17 Score=25.41 Aligned_cols=60 Identities=20% Similarity=0.369 Sum_probs=36.0
Q ss_pred EecCCCcCCCccCC---CCcEEEEE--Ee--------eEEEEEEEeC---CCcEEEEE-----EcCCCEEEECC-CCeEE
Q 041665 87 QFPAGAINPPHTHP---RSAELLFV--VS--------GILEVGFIDT---TNKLYTQT-----LQIGDMFVFPK-GLVHY 144 (206)
Q Consensus 87 ~l~pg~~~~~H~H~---~a~E~~yV--l~--------G~~~~~~~~~---~~~~~~~~-----L~~GD~~~~P~-g~~H~ 144 (206)
...+|+...||+.. ....+.++ +. |++.+ ... ++...... .++|++++|+. ..+|.
T Consensus 5 ~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~--~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~ 82 (100)
T PF13640_consen 5 RYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEF--YPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHG 82 (100)
T ss_dssp EEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEE--TTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEE
T ss_pred EECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEE--eccccCCCcceEEEeccccCCCCEEEEEeCCCCeec
Confidence 45788888888875 33444343 23 33333 321 12222333 88999999999 99999
Q ss_pred EEeC
Q 041665 145 QYNS 148 (206)
Q Consensus 145 ~~N~ 148 (206)
..-.
T Consensus 83 v~~v 86 (100)
T PF13640_consen 83 VTPV 86 (100)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 9777
No 136
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=62.48 E-value=35 Score=27.70 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=35.1
Q ss_pred EEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEE
Q 041665 85 ILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFV 136 (206)
Q Consensus 85 ~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~ 136 (206)
...+++|...- +-......+++|++|.+++.....+++.....+.+||++-
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g 82 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFI 82 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhh
Confidence 45566766542 2233458899999999999866544455667888999764
No 137
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=62.23 E-value=19 Score=28.06 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=28.3
Q ss_pred CcEEEEEEeeEEEEEEEeCCCcE-EEEEEcCCCEEE
Q 041665 102 SAELLFVVSGILEVGFIDTTNKL-YTQTLQIGDMFV 136 (206)
Q Consensus 102 a~E~~yVl~G~~~~~~~~~~~~~-~~~~L~~GD~~~ 136 (206)
...+.+|++|.+.+...+++|+. ....+.+||++-
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEee
Confidence 46788999999999988887754 467789999764
No 138
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=61.17 E-value=20 Score=27.85 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=40.4
Q ss_pred cEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEe---CCCCccEEEEEE
Q 041665 103 AELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYN---SKANQPAAAISA 159 (206)
Q Consensus 103 ~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N---~g~~~~a~~i~~ 159 (206)
.-+.+|++|+=++.++++ .+...+|+.++.+.+++-..+- ..+. |...+..
T Consensus 24 p~i~~vlQG~K~~~~g~~-----~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~-P~l~l~l 77 (155)
T PF06719_consen 24 PSICIVLQGSKRVHLGDQ-----VFEYDAGQYLVSSVDLPVESEVVEASPEE-PYLALSL 77 (155)
T ss_pred CeEEEEEeeeEEEEECCc-----eEEecCCcEEEecCCCcEEEEEeeccCCC-CEEEEEE
Confidence 778999999999998876 8999999999999998865544 3344 6655554
No 139
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=53.03 E-value=90 Score=25.00 Aligned_cols=65 Identities=8% Similarity=0.019 Sum_probs=46.4
Q ss_pred CCccCCCCcEEEEEEee-EEEEEEEeCC-----CcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEe
Q 041665 95 PPHTHPRSAELLFVVSG-ILEVGFIDTT-----NKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAF 160 (206)
Q Consensus 95 ~~H~H~~a~E~~yVl~G-~~~~~~~~~~-----~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~ 160 (206)
.+-.|+..+|.+.-+.| ...+.+...+ +....+....|+.+-.-+|++|...-.=+. +..++++-
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~-~~dF~vvd 142 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDA-VSDFVVVD 142 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCC-CccEEEEe
Confidence 34457778888888888 6555555332 246789999999999999999988554445 55555554
No 140
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=51.67 E-value=2.6 Score=41.37 Aligned_cols=59 Identities=24% Similarity=0.281 Sum_probs=42.4
Q ss_pred ecCCCcCCCccCCCCcEEEEEEeeE-----EEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 88 FPAGAINPPHTHPRSAELLFVVSGI-----LEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 88 l~pg~~~~~H~H~~a~E~~yVl~G~-----~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
.+-|...++-.||-.++-+|.-++- -++++ +..++.-.-||.++||+|.+|+++|.-..
T Consensus 762 ~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGV-----e~WtfvQ~LGdAVfIPAGaPHQVrNLkSC 825 (889)
T KOG1356|consen 762 KEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGV-----EPWTFVQFLGDAVFIPAGAPHQVRNLKSC 825 (889)
T ss_pred HHhcCCCCcccCCCcccceeccHHHHHHHHHHhCC-----CccchhhcccceEEecCCCcHHhhhhhhH
Confidence 3445556666688888888877652 22332 22377788999999999999999998655
No 141
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=51.13 E-value=85 Score=26.13 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=56.8
Q ss_pred CcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCccEEEEEEecCCCcce--ee
Q 041665 92 AINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSKANQPAAAISAFGSASAGT--VS 169 (206)
Q Consensus 92 ~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~~a~~i~~~~s~~pg~--~~ 169 (206)
|....|| ++..+.|++|+...... |+....+.++||..+.|+|.....+-..+ +.++.--..--|.. +.
T Consensus 112 GhsGrh~---ad~y~tIL~G~~~~~~~---g~~~~evy~pGd~~~l~rg~a~~y~m~~~---tw~LEY~RG~IP~~lpf~ 182 (216)
T PF04622_consen 112 GHSGRHW---ADDYFTILSGEQWAWSP---GSLEPEVYKPGDSHHLPRGEAKQYQMPPG---TWALEYGRGWIPSMLPFG 182 (216)
T ss_pred CCCcceE---eeeEEEEEEEEEEEEcC---CCCCceEeccCCEEEecCceEEEEEeCCC---eEEEEecCCchhhhhHHH
Confidence 3445565 47889999999877643 33447889999999999999998876533 34443211112321 22
Q ss_pred echhhhcCCCCHHHHHHHcCCCHHH
Q 041665 170 VPTTVFATGIDENILAKAFKTDVTT 194 (206)
Q Consensus 170 ~~~~~f~~~~p~~vla~~f~~~~~~ 194 (206)
+++.+|. .++-..+-++..+...+
T Consensus 183 ~~dt~~s-TlDf~t~~~T~~~~~~~ 206 (216)
T PF04622_consen 183 FADTLFS-TLDFPTLYRTVYITARE 206 (216)
T ss_pred HHHHHHh-ccchHHHHHHHHHHHHH
Confidence 2345553 45555555555555443
No 142
>PLN02288 mannose-6-phosphate isomerase
Probab=48.63 E-value=14 Score=33.47 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=19.9
Q ss_pred EEEEcCCCEEEECCCCeEEEEe
Q 041665 126 TQTLQIGDMFVFPKGLVHYQYN 147 (206)
Q Consensus 126 ~~~L~~GD~~~~P~g~~H~~~N 147 (206)
...|++||.+++|+|.+|.+..
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~ 273 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLS 273 (394)
T ss_pred eEecCCCCEEEecCCCCceecC
Confidence 5899999999999999998853
No 143
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=48.24 E-value=21 Score=28.78 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=23.3
Q ss_pred CCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECC
Q 041665 101 RSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPK 139 (206)
Q Consensus 101 ~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~ 139 (206)
...-++|+++|++.+...++ ...|.+||.+++..
T Consensus 134 ~~~~l~~~~~G~~~i~~~~~-----~~~L~~~d~l~~~~ 167 (184)
T PF05962_consen 134 ASTVLVYVLEGAWSITEGGN-----CISLSAGDLLLIDD 167 (184)
T ss_dssp -SEEEEEESSS-EEECCCEE-----EEEE-TT-EEEEES
T ss_pred CCEEEEEEeeCcEEEecCCC-----ceEcCCCCEEEEeC
Confidence 34778999999877653323 79999999998877
No 144
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=47.50 E-value=47 Score=21.46 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=21.0
Q ss_pred EEEEEeCCCcEEEEEEcCCCEEEECCCCeEE
Q 041665 114 EVGFIDTTNKLYTQTLQIGDMFVFPKGLVHY 144 (206)
Q Consensus 114 ~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~ 144 (206)
++.+-|+.|+..+.+|++|..+.--+|.++.
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~H 41 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGGEFHTHRGAIRH 41 (54)
T ss_dssp EEEEEETT--EEEEE--TT-EEEETTEEEEH
T ss_pred EEEEccCCCCeeeEEECCCCeEEcCccccch
Confidence 4567788889899999999999988887654
No 145
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=45.84 E-value=48 Score=32.76 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=33.9
Q ss_pred EEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEE
Q 041665 83 TAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMF 135 (206)
Q Consensus 83 ~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~ 135 (206)
+....++||...-..-. ..+++.+|++|++.+...+...+.....+++||.+
T Consensus 397 ~~~~~~~pge~I~~qge-~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNE-APDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCC-CCceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 34456778775533222 34789999999999864332223446789999976
No 146
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=44.39 E-value=22 Score=23.36 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=18.6
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhhc
Q 041665 178 GIDENILAKAFKTDVTTIQKIKAGL 202 (206)
Q Consensus 178 ~~p~~vla~~f~~~~~~v~~l~~~~ 202 (206)
+=.+.-|.+.+|++++++++||.++
T Consensus 43 Gs~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 43 GSVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp SSHHHHHHHT-T--HHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHc
Confidence 3567789999999999999999864
No 147
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.09 E-value=43 Score=32.91 Aligned_cols=48 Identities=27% Similarity=0.377 Sum_probs=34.0
Q ss_pred EecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEE
Q 041665 87 QFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMF 135 (206)
Q Consensus 87 ~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~ 135 (206)
...||...-..-.+- +|+.+|++|++++.-.+..|......|++||.+
T Consensus 446 ~f~pge~iireGd~v-~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 446 YFTPGEYIIREGDPV-TDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred ccCCCCeEEecCCcc-ceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 345555554444554 999999999998765443344568899999985
No 148
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=42.26 E-value=38 Score=33.56 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=48.3
Q ss_pred EEEEecCCCcCCC-ccCCCCcEEEEEEeeEEEE----------------EEEeCCCcEEEEEEcCCCEEEECCCCeEEEE
Q 041665 84 AILQFPAGAINPP-HTHPRSAELLFVVSGILEV----------------GFIDTTNKLYTQTLQIGDMFVFPKGLVHYQY 146 (206)
Q Consensus 84 ~~~~l~pg~~~~~-H~H~~a~E~~yVl~G~~~~----------------~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~ 146 (206)
....+.+|+..-| |.+.+ .-++|-+.++-.- -+++.-.+.+...|++|+.++||.|.+|...
T Consensus 139 tdfhidfggtsvwyhil~G-~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~VdkC~~~~l~~g~T~~iPsGwIhAV~ 217 (776)
T KOG1633|consen 139 TDFHIDFGGTSVWYHILAG-EKTFYLIPPTCENLELYECWESSTPQDEIFFGDCVDKCYKCILKQGQTLFIPSGWIHAVL 217 (776)
T ss_pred cccccCCCCcchhhhhhcc-ccceeeeCCcccchhhhhhhhhcccccccccCCccceeEEEEeccCceEecccceeEeee
Confidence 3445566665543 66644 6666666654211 1112213556789999999999999999998
Q ss_pred eCCCCccEEEEEEecCC
Q 041665 147 NSKANQPAAAISAFGSA 163 (206)
Q Consensus 147 N~g~~~~a~~i~~~~s~ 163 (206)
-..+. -+...-++.+.
T Consensus 218 Tp~d~-l~fgGnflhsl 233 (776)
T KOG1633|consen 218 TPTDC-LVFGGNFLHSL 233 (776)
T ss_pred cCcch-heeccchhhhh
Confidence 87666 44443344333
No 149
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=40.91 E-value=1.2e+02 Score=23.27 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=42.0
Q ss_pred cCCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEE----eeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEe
Q 041665 73 FPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVV----SGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYN 147 (206)
Q Consensus 73 ~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl----~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N 147 (206)
-|++++. .+..+.+++|....-- +..|+..++ .|++.+++.++.| ..+++||++.+-.|..-.+++
T Consensus 11 ~P~~kN~--~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~~----~~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 11 KPGLKNI--NVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEEG----CLIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred Chhhhcc--eEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCcC----cccCCccEEEecccchhhhcC
Confidence 3677665 4455556666543221 234555544 5677888777644 479999999998887766654
No 150
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=40.72 E-value=35 Score=29.08 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=28.9
Q ss_pred EEEEcCCCEEEECCCCeEEE-EeCCCCccEEEEEEecCCC
Q 041665 126 TQTLQIGDMFVFPKGLVHYQ-YNSKANQPAAAISAFGSAS 164 (206)
Q Consensus 126 ~~~L~~GD~~~~P~g~~H~~-~N~g~~~~a~~i~~~~s~~ 164 (206)
...+++||++++...++|.- .|.++.....++..|++.+
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~~ 251 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSVE 251 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecCC
Confidence 46789999999999999977 5666552455666776543
No 151
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=40.51 E-value=12 Score=33.18 Aligned_cols=79 Identities=22% Similarity=0.357 Sum_probs=52.9
Q ss_pred ccccCCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCC--C-------------------------
Q 041665 70 MAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTT--N------------------------- 122 (206)
Q Consensus 70 ~~~~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~--~------------------------- 122 (206)
...+|..++.++.+...-.+.|...|.|.-+. ..++.=+.|+-++.+.-.. +
T Consensus 239 yc~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~f 317 (355)
T KOG2132|consen 239 YCSFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAF 317 (355)
T ss_pred eeecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhh
Confidence 34556655544555555555588888887666 6677777888777766321 0
Q ss_pred ------cEEEEEEcCCCEEEECCCCeEEEEeCC
Q 041665 123 ------KLYTQTLQIGDMFVFPKGLVHYQYNSK 149 (206)
Q Consensus 123 ------~~~~~~L~~GD~~~~P~g~~H~~~N~g 149 (206)
+.....|++||++++|+...|+.+...
T Consensus 318 p~~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~d 350 (355)
T KOG2132|consen 318 PKFAKARFLDCLLEPGEALFIPPKWWHYVRSLD 350 (355)
T ss_pred hHHHHHHHHHHhcCCchhccccHHHhhhhhhcc
Confidence 112346889999999999999987643
No 152
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=39.94 E-value=88 Score=27.94 Aligned_cols=84 Identities=8% Similarity=0.061 Sum_probs=59.2
Q ss_pred CceEEEEeeccccCCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCc-EEEEEEcCCCEE--EE
Q 041665 61 PIFRVSKASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNK-LYTQTLQIGDMF--VF 137 (206)
Q Consensus 61 ~g~~v~~~~~~~~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~-~~~~~L~~GD~~--~~ 137 (206)
.|..|..++.+. ++....+.|+.++...+...+...+...+-.+++..-++.+..++|+ .-...|++||-+ +.
T Consensus 251 sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL~~~ 326 (344)
T PRK02290 251 SGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVLGYL 326 (344)
T ss_pred CCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEEe
Confidence 456666665432 23456788888888777655555466899999999999999999886 357789999954 55
Q ss_pred CCCCeEEEEeC
Q 041665 138 PKGLVHYQYNS 148 (206)
Q Consensus 138 P~g~~H~~~N~ 148 (206)
+.+--|+-...
T Consensus 327 ~~~~RHfG~~i 337 (344)
T PRK02290 327 EEAARHFGMAI 337 (344)
T ss_pred cCCccccccee
Confidence 55566655433
No 153
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=39.52 E-value=31 Score=25.97 Aligned_cols=26 Identities=8% Similarity=0.328 Sum_probs=21.0
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhhcC
Q 041665 178 GIDENILAKAFKTDVTTIQKIKAGLA 203 (206)
Q Consensus 178 ~~p~~vla~~f~~~~~~v~~l~~~~~ 203 (206)
++++..+|+..++++++|.++|+..+
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 79999999999999999999998754
No 154
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=38.98 E-value=64 Score=30.26 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=35.1
Q ss_pred EEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEE
Q 041665 82 STAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMF 135 (206)
Q Consensus 82 ~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~ 135 (206)
.+-...+.||...--- -.-+.|...|.+|.+.+ ++++|..+-.++++|+++
T Consensus 329 klk~qvfSPgDyICrK-GdvgkEMyIVk~G~L~V--v~dDg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 329 KLKPQVFSPGDYICRK-GDVGKEMYIVKEGKLAV--VADDGVTVFVTLKAGSVF 379 (536)
T ss_pred HhcceeeCCCCeEEec-CcccceEEEEEccEEEE--EecCCcEEEEEecCCcee
Confidence 3344455666654222 12468999999999876 556777778999999975
No 155
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=38.34 E-value=66 Score=25.48 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=59.7
Q ss_pred EEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEE---EeCCC----cEEEEEEcCCCEEEECCCC-eEEEEeCCCCc
Q 041665 81 VSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGF---IDTTN----KLYTQTLQIGDMFVFPKGL-VHYQYNSKANQ 152 (206)
Q Consensus 81 i~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~---~~~~~----~~~~~~L~~GD~~~~P~g~-~H~~~N~g~~~ 152 (206)
+...++.-.+|-....|-|.++.-++-+++|+++-.- -+... +.-+.++...++.+|+-.+ +|+.+|.+-.+
T Consensus 72 fNLmILCWGeGhgSSvHDHtdsHCF~KmL~G~L~Et~yawPd~ks~e~v~isE~~~~~N~vaYiND~lGLHRvEN~SHs~ 151 (196)
T KOG4064|consen 72 FNLMILCWGEGHGSSVHDHTDSHCFVKMLDGELTETKYAWPDRKSHEPVDISEKTYGMNGVAYINDELGLHRVENLSHSN 151 (196)
T ss_pred EeEEEEEecCCCCccccccccchhHHHHhcCcchhhcccCCCcccCccccccceeeeccceEEecccccceeccccccCC
Confidence 5566777788888899999998888889999875432 22211 1125788889999999886 79999988653
Q ss_pred cEEEEEEec
Q 041665 153 PAAAISAFG 161 (206)
Q Consensus 153 ~a~~i~~~~ 161 (206)
.++-+-.+.
T Consensus 152 ~aVSLHLY~ 160 (196)
T KOG4064|consen 152 GAVSLHLYI 160 (196)
T ss_pred CceEEEEec
Confidence 777776664
No 156
>COG1741 Pirin-related protein [General function prediction only]
Probab=37.63 E-value=2.7e+02 Score=24.04 Aligned_cols=41 Identities=27% Similarity=0.321 Sum_probs=29.6
Q ss_pred cCCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEE
Q 041665 73 FPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEV 115 (206)
Q Consensus 73 ~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~ 115 (206)
.|.-... +..+.+.+++|.....+ =+...-++||++|++++
T Consensus 166 ~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v 206 (276)
T COG1741 166 SPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEV 206 (276)
T ss_pred cccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEE
Confidence 3444444 77888889999988766 22337789999998776
No 157
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=36.16 E-value=58 Score=25.08 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCEEEECCCCeEEE-EeCCCC
Q 041665 123 KLYTQTLQIGDMFVFPKGLVHYQ-YNSKAN 151 (206)
Q Consensus 123 ~~~~~~L~~GD~~~~P~g~~H~~-~N~g~~ 151 (206)
......+++||++++...++|.- .|.++.
T Consensus 178 ~~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~ 207 (211)
T PF05721_consen 178 EWVPVPMKAGDVLFFHSRLIHGSGPNTSDD 207 (211)
T ss_dssp GCEEE-BSTTEEEEEETTSEEEEE-B-SSS
T ss_pred ceEEeecCCCeEEEEcCCccccCCCCCCcC
Confidence 34577899999999999999987 445444
No 158
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=35.89 E-value=54 Score=31.68 Aligned_cols=49 Identities=35% Similarity=0.348 Sum_probs=33.7
Q ss_pred EEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEE
Q 041665 82 STAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNKLYTQTLQIGDMF 135 (206)
Q Consensus 82 ~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~ 135 (206)
.+....-.||.. -.|.-+.-+-+++|++|++++--+++ +...|.+||++
T Consensus 570 ~f~~~H~APGDL-lYHtGESvDaLcFvVsGSLEVIQDDE----VVAILGKGDVF 618 (971)
T KOG0501|consen 570 EFQTNHCAPGDL-LYHTGESVDALCFVVSGSLEVIQDDE----VVAILGKGDVF 618 (971)
T ss_pred HHHhccCCCcce-eeecCCccceEEEEEecceEEeecCc----EEEEeecCccc
Confidence 333444455543 34655666889999999999854443 47899999986
No 159
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=35.18 E-value=1.2e+02 Score=25.31 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.8
Q ss_pred EEEEcCCCEEEECCCCeEEEEeCCCC
Q 041665 126 TQTLQIGDMFVFPKGLVHYQYNSKAN 151 (206)
Q Consensus 126 ~~~L~~GD~~~~P~g~~H~~~N~g~~ 151 (206)
...+++|+++++|...+|.......+
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pVt~G 167 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPVTRG 167 (226)
T ss_pred EEecCCCeEEEECCCCceeeeeccCc
Confidence 67889999999999999999876555
No 160
>PF13994 PgaD: PgaD-like protein
Probab=34.96 E-value=45 Score=25.45 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=21.4
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhh
Q 041665 179 IDENILAKAFKTDVTTIQKIKAG 201 (206)
Q Consensus 179 ~p~~vla~~f~~~~~~v~~l~~~ 201 (206)
++++-+|+.|++++++++++++.
T Consensus 101 ~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 101 VSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCHHHHHHHcCCCHHHHHHHHhC
Confidence 88999999999999999999875
No 161
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=34.22 E-value=53 Score=19.78 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=21.1
Q ss_pred hhhcCCCCHHHHHHHcCCCHHHHHHHHh
Q 041665 173 TVFATGIDENILAKAFKTDVTTIQKIKA 200 (206)
Q Consensus 173 ~~f~~~~p~~vla~~f~~~~~~v~~l~~ 200 (206)
.++.++++-.-+|+.|+++..+|-+..+
T Consensus 16 ~l~~~G~si~~IA~~~gvsr~TvyR~l~ 43 (45)
T PF02796_consen 16 ELYAEGMSIAEIAKQFGVSRSTVYRYLN 43 (45)
T ss_dssp HHHHTT--HHHHHHHTTS-HHHHHHHHC
T ss_pred HHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4566689999999999999999988765
No 162
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=33.29 E-value=50 Score=25.51 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHhh
Q 041665 177 TGIDENILAKAFKTDVTTIQKIKAG 201 (206)
Q Consensus 177 ~~~p~~vla~~f~~~~~~v~~l~~~ 201 (206)
..++++-+|++|+++.+.++++++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 3689999999999999999999864
No 163
>PHA02699 hypothetical protein; Provisional
Probab=30.93 E-value=3.1e+02 Score=24.98 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=41.0
Q ss_pred EEEEEecCCCcCC-CccCCCC--cEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEe-CCCCccEEEEE
Q 041665 83 TAILQFPAGAINP-PHTHPRS--AELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYN-SKANQPAAAIS 158 (206)
Q Consensus 83 ~~~~~l~pg~~~~-~H~H~~a--~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N-~g~~~~a~~i~ 158 (206)
...+.++-|.... -|.++.+ --...+++-+..-++.-++-+.....+++||.+++++-.--.+.. .|.+ ++++.
T Consensus 145 ~~LVKLkHGN~fm~~~m~~~sagFvAtICIKNeGiSgI~Vp~T~~lktnmqeGD~IVsRSsRGI~FLPQIGGe--AiYLI 222 (466)
T PHA02699 145 CQALKLKHDEWYMRHHMAPDMAAFVAIICIKNEGMAAIAVNNTKFLKTNIQEGDAIVFPAARGMFFLPHIGGD--AEYII 222 (466)
T ss_pred eEEEEeeccchhhcccccCcccceEEEEEEcCCCeeEEEecCCcceeeeeecCCEEEEehhchhhhhhhcCCc--eEEEE
Confidence 3445555555432 2333333 344455655555554444335568999999999999865444432 3433 45444
Q ss_pred E
Q 041665 159 A 159 (206)
Q Consensus 159 ~ 159 (206)
+
T Consensus 223 V 223 (466)
T PHA02699 223 L 223 (466)
T ss_pred E
Confidence 4
No 164
>smart00153 VHP Villin headpiece domain.
Probab=29.89 E-value=57 Score=19.15 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=17.5
Q ss_pred CCHHHHHHHcCCCHHHHHHHH
Q 041665 179 IDENILAKAFKTDVTTIQKIK 199 (206)
Q Consensus 179 ~p~~vla~~f~~~~~~v~~l~ 199 (206)
++++-..+.||++.++..+|.
T Consensus 2 LsdeeF~~vfgmsr~eF~~LP 22 (36)
T smart00153 2 LSDEDFEEVFGMTREEFYKLP 22 (36)
T ss_pred CCHHHHHHHHCCCHHHHHhCc
Confidence 567888899999999988765
No 165
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=29.44 E-value=91 Score=25.58 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=22.5
Q ss_pred CchhhHHHHHHHHHHHHhhhccCCCCCCceecc
Q 041665 1 MASTNIFKSLIFLLIITVVTASDPDILTDFVIP 33 (206)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~cva 33 (206)
|+-...+..++++++++..+++-|+|.+-+--|
T Consensus 1 mtk~k~~~~il~~al~l~GCs~~~a~~~sv~~a 33 (200)
T COG3417 1 MTKMKIYASILLLALFLSGCSSEPAPKESVKDA 33 (200)
T ss_pred CchHHHHHHHHHHHHHHhhcccCCCcchhcCcC
Confidence 455556666777777777777778877776544
No 166
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=28.92 E-value=1.6e+02 Score=26.40 Aligned_cols=84 Identities=6% Similarity=0.067 Sum_probs=58.1
Q ss_pred CceEEEEeeccccCCCCCCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeEEEEEEEeCCCc-EEEEEEcCCCEE--EE
Q 041665 61 PIFRVSKASMAEFPALNGQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGILEVGFIDTTNK-LYTQTLQIGDMF--VF 137 (206)
Q Consensus 61 ~g~~v~~~~~~~~P~l~~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~~~~~~~~~~~~-~~~~~L~~GD~~--~~ 137 (206)
.|..|..++... ++....+.|+.++...+...+-..+...+-.+++..-++.+..++|+ .-...|++||-+ ++
T Consensus 261 sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL~~~ 336 (354)
T PF01959_consen 261 SGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVLVYL 336 (354)
T ss_pred CCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEEe
Confidence 355666654332 23446788888887776544444466999999999999999998886 346789999954 55
Q ss_pred CCCCeEEEEeC
Q 041665 138 PKGLVHYQYNS 148 (206)
Q Consensus 138 P~g~~H~~~N~ 148 (206)
..+--|+-...
T Consensus 337 ~~~~RHfG~~I 347 (354)
T PF01959_consen 337 EEAGRHFGMKI 347 (354)
T ss_pred cCCCcccceEe
Confidence 66666765444
No 167
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=28.80 E-value=71 Score=19.21 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=18.9
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhhcC
Q 041665 178 GIDENILAKAFKTDVTTIQKIKAGLA 203 (206)
Q Consensus 178 ~~p~~vla~~f~~~~~~v~~l~~~~~ 203 (206)
+.+..-+++.+|++...|.+..++|.
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT---
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 68889999999999999999998874
No 168
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=28.78 E-value=57 Score=19.19 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=15.5
Q ss_pred CCHHHHHHHcCCCHHHHHHHH
Q 041665 179 IDENILAKAFKTDVTTIQKIK 199 (206)
Q Consensus 179 ~p~~vla~~f~~~~~~v~~l~ 199 (206)
++++--.+.|+++.++..+|.
T Consensus 2 Lsd~dF~~vFgm~~~eF~~lP 22 (36)
T PF02209_consen 2 LSDEDFEKVFGMSREEFYKLP 22 (36)
T ss_dssp S-HHHHHHHHSS-HHHHHHS-
T ss_pred cCHHHHHHHHCCCHHHHHHCh
Confidence 567888899999999988765
No 169
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=28.07 E-value=72 Score=25.14 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=22.1
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhh
Q 041665 178 GIDENILAKAFKTDVTTIQKIKAG 201 (206)
Q Consensus 178 ~~p~~vla~~f~~~~~~v~~l~~~ 201 (206)
.++++-+|+.|+++++.++++++.
T Consensus 98 ~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 98 DLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCChHHHHHHcCCCHHHHHHHHhC
Confidence 689999999999999999999875
No 170
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=27.96 E-value=20 Score=24.04 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=0.0
Q ss_pred CchhhHHHHHHH
Q 041665 1 MASTNIFKSLIF 12 (206)
Q Consensus 1 ~~~~~~~~~~~~ 12 (206)
||++.++..+++
T Consensus 1 mKLt~vliVavL 12 (75)
T PF02950_consen 1 MKLTCVLIVAVL 12 (75)
T ss_dssp ------------
T ss_pred CCcchHHHHHHH
Confidence 899988743333
No 171
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=27.65 E-value=37 Score=30.47 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=17.8
Q ss_pred EEEEcCCCEEEECCCCeEEEEe
Q 041665 126 TQTLQIGDMFVFPKGLVHYQYN 147 (206)
Q Consensus 126 ~~~L~~GD~~~~P~g~~H~~~N 147 (206)
...|++|+.+++|+|.+|....
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEecCCceEEecCCCcccccc
Confidence 4689999999999999998864
No 172
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=24.02 E-value=96 Score=19.99 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcCCC
Q 041665 181 ENILAKAFKTDVTTIQKIKAGLAAK 205 (206)
Q Consensus 181 ~~vla~~f~~~~~~v~~l~~~~~~~ 205 (206)
-..+++-||+++++++..-+..|+.
T Consensus 23 v~ywa~~~gvt~~~L~~AV~~vG~~ 47 (57)
T PF12244_consen 23 VRYWAKRFGVTEEQLREAVRAVGNS 47 (57)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHCcC
Confidence 3578999999999999988887764
No 173
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=23.41 E-value=1.1e+02 Score=18.22 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=14.4
Q ss_pred CCCHHHHHHHcC-CCHHHHHHH
Q 041665 178 GIDENILAKAFK-TDVTTIQKI 198 (206)
Q Consensus 178 ~~p~~vla~~f~-~~~~~v~~l 198 (206)
.+|+|++.+-|. ++.+++-++
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~ 24 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRL 24 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHH
Confidence 589999999988 677665554
No 174
>PRK11396 hypothetical protein; Provisional
Probab=22.62 E-value=4.3e+02 Score=21.56 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=42.1
Q ss_pred CCeEEEEEEEecCCCcCCCccCCCCcEEEEEEeeE-EEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCC
Q 041665 78 GQSVSTAILQFPAGAINPPHTHPRSAELLFVVSGI-LEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYNSK 149 (206)
Q Consensus 78 ~~gi~~~~~~l~pg~~~~~H~H~~a~E~~yVl~G~-~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g 149 (206)
+....+...++...+.+.. .|+-+-++.+++|. +++...+. ....+++++.+.|+.+..-..+..+
T Consensus 33 dF~WRiSiA~I~~~GpFS~--FpGidR~i~lL~G~g~~L~~~~~----~~~~l~~~~p~~F~Gd~~v~a~L~~ 99 (191)
T PRK11396 33 DFYWRASIASIAANGEFSL--FPGMERIVTLLEGGEMFLESADR----FNHTLKPLQPFAFAADQVVKAKLTA 99 (191)
T ss_pred CceEEEEEEEecCCCCCCC--CCCccEEEEEEECCCEEEeeCCc----cceecCCCCCeEeCCCCeeEEEECC
Confidence 4344444445555444433 46778999999994 55554322 1457789999999998876666543
No 175
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=22.36 E-value=1.7e+02 Score=23.65 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=32.2
Q ss_pred cEEEEEEeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEe
Q 041665 103 AELLFVVSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGLVHYQYN 147 (206)
Q Consensus 103 ~E~~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N 147 (206)
.=+..-++|+..+.+.. .|..+...|.+||-+++.++.+=.+..
T Consensus 130 g~~~~~l~G~G~v~l~~-~G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 130 GLFMLKLSGRGTVFLSG-YGAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp -EEEEEEESSCEEEEEE-CCSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred CcEEEEEEEEEEEEEEe-CCcEEEEEccCCceEEEcCCCEEEECC
Confidence 34445678888888777 477888999999999998877666654
No 176
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=21.96 E-value=99 Score=20.19 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHhhhccC
Q 041665 5 NIFKSLIFLLIITVVTASD 23 (206)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~d 23 (206)
++||+|+++++..-++|+.
T Consensus 3 nllkillilafa~pvfass 21 (65)
T PF10880_consen 3 NLLKILLILAFASPVFASS 21 (65)
T ss_pred hHHHHHHHHHHhhhHhhhc
Confidence 6788766666655555553
No 177
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=20.78 E-value=1.3e+02 Score=17.14 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=18.3
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhhcC
Q 041665 179 IDENILAKAFKTDVTTIQKIKAGLA 203 (206)
Q Consensus 179 ~p~~vla~~f~~~~~~v~~l~~~~~ 203 (206)
+..+-+|..+|++.+.|.++-+++.
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~ 27 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLE 27 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4567789999999999988877763
No 178
>PHA02095 hypothetical protein
Probab=20.60 E-value=1.5e+02 Score=20.33 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=18.2
Q ss_pred ccCCCCcEEEEEEeeEEEEEEEe
Q 041665 97 HTHPRSAELLFVVSGILEVGFID 119 (206)
Q Consensus 97 H~H~~a~E~~yVl~G~~~~~~~~ 119 (206)
-||.+..+-.||+.|..++.-++
T Consensus 19 s~~~g~iq~~yv~ng~wefsrvd 41 (84)
T PHA02095 19 SMTEGVIQNGYVENGSWEFSRVD 41 (84)
T ss_pred EeecceeeeeEEecCcEEEEecc
Confidence 47778888999999998876554
No 179
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=20.41 E-value=3.1e+02 Score=23.37 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=34.4
Q ss_pred CCcEEEEE-EeeEEEEEEEeCCCcEEEEEEcCCCEEEECCCC--eEEEEeCCCCccEEEEEE
Q 041665 101 RSAELLFV-VSGILEVGFIDTTNKLYTQTLQIGDMFVFPKGL--VHYQYNSKANQPAAAISA 159 (206)
Q Consensus 101 ~a~E~~yV-l~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~--~H~~~N~g~~~~a~~i~~ 159 (206)
+..|+..| +-|..++.++++ .++|..+|.+|+-.|. +-+-...+.. +|.++..
T Consensus 74 eRRElgiINIG~~G~i~v~g~-----~y~l~~rd~LYvg~G~~dv~F~s~d~~~-pAkFY~~ 129 (278)
T COG3717 74 ERRELGIINIGGPGTITVDGQ-----EYELGHRDALYVGMGAKDVTFSSIDGAA-PAKFYYV 129 (278)
T ss_pred eeeeeeEEeeCCCceEEECCE-----EEEeccccEEEEecCccceEEeccCCCC-cceEEEe
Confidence 34666665 445567776665 8999999999998873 2233333445 6666643
No 180
>PRK11443 lipoprotein; Provisional
Probab=20.35 E-value=1.1e+02 Score=23.20 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=12.6
Q ss_pred HHHHHHhhhccCCCCCCceecc
Q 041665 12 FLLIITVVTASDPDILTDFVIP 33 (206)
Q Consensus 12 ~~~~~~~~~~~d~~~~~d~cva 33 (206)
++++++++++++|....+-|.+
T Consensus 8 ~~~~lLsgCa~~~~~~~~~~~~ 29 (124)
T PRK11443 8 LLALLLSGCQIDPYTHAPTLTS 29 (124)
T ss_pred HHHHHHHhccCCCCCChhhhcc
Confidence 3344556678877544555654
No 181
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=20.21 E-value=91 Score=21.79 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=10.6
Q ss_pred CchhhHHHHHHHHHH
Q 041665 1 MASTNIFKSLIFLLI 15 (206)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (206)
||.+.+|.++.++++
T Consensus 1 MKi~kv~~ff~~Ll~ 15 (84)
T PF09716_consen 1 MKISKVFYFFAFLLA 15 (84)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999875544444
Done!