BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041666
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LQ3|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 401
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 11 LVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLS 63
L+ + +Y LA+H FWGLW ++ A ++ I+F Y +YA+ RFQ Y+ +K +L S
Sbjct: 344 LLVEVSRYALASHFFWGLWSILQASMSTIEFGYLDYAQSRFQFYFQQKGQLTS 396
>pdb|3FEG|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 379
Score = 57.0 bits (136), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 11 LVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLS 63
L+ + +Y LA+H FWGLW ++ A ++ I+F Y +YA+ RFQ Y+ +K +L S
Sbjct: 322 LLVEVSRYALASHFFWGLWSILQASMSTIEFGYLDYAQSRFQFYFQQKGQLTS 374
>pdb|2IG7|A Chain A, Crystal Structure Of Human Choline Kinase B
pdb|2IG7|B Chain B, Crystal Structure Of Human Choline Kinase B
Length = 401
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 11 LVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLS 63
L+ + +Y LA+H FWGLW ++ A + I+F Y +YA+ RFQ Y+ +K +L S
Sbjct: 344 LLVEVSRYALASHFFWGLWSILQASXSTIEFGYLDYAQSRFQFYFQQKGQLTS 396
>pdb|2I7Q|A Chain A, Crystal Structure Of Human Choline Kinase A
Length = 402
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 36/52 (69%)
Query: 10 QLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQEL 61
+++ + ++ LA+H WGLW ++ A ++ I+F Y +YA+ RF Y+ +K++L
Sbjct: 349 EMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYAQARFDAYFHQKRKL 400
>pdb|3F2R|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3F2R|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3G15|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
pdb|3G15|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
Length = 401
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 36/52 (69%)
Query: 10 QLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQEL 61
+++ + ++ LA+H WGLW ++ A ++ I+F Y +YA+ RF Y+ +K++L
Sbjct: 348 EMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYAQARFDAYFHQKRKL 399
>pdb|2CKO|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2
pdb|2CKO|B Chain B, Crystal Structure Of Human Choline Kinase Alpha 2
pdb|2CKP|A Chain A, Crystal Structure Of Human Choline Kinase Alpha-2 In
Complex With Adp
pdb|2CKP|B Chain B, Crystal Structure Of Human Choline Kinase Alpha-2 In
Complex With Adp
pdb|2CKQ|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2 In
Complex With Phosphocholine
pdb|2CKQ|B Chain B, Crystal Structure Of Human Choline Kinase Alpha 2 In
Complex With Phosphocholine
Length = 390
Score = 52.0 bits (123), Expect = 7e-08, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 36/52 (69%)
Query: 10 QLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQEL 61
+++ + ++ LA+H WGLW ++ A ++ I+F Y +YA+ RF Y+ +K++L
Sbjct: 337 EMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYAQARFDAYFHQKRKL 388
>pdb|3ZM9|A Chain A, The Mechanism Of Allosteric Coupling In Choline Kinase A1
Revealed By A Rationally Designed Inhibitor
pdb|3ZM9|B Chain B, The Mechanism Of Allosteric Coupling In Choline Kinase A1
Revealed By A Rationally Designed Inhibitor
Length = 383
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 36/52 (69%)
Query: 10 QLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQEL 61
+++ + ++ LA+H WGLW ++ A ++ I+F Y +YA+ RF Y+ +K++L
Sbjct: 330 EMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYAQARFDAYFHQKRKL 381
>pdb|3MES|A Chain A, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
pdb|3MES|B Chain B, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
Length = 424
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 3 PSETEVNQLVDDAEKYTLANHIFWGLWGL--ISAY-VNKIDFNYKEYARQRFQQYWMKKQ 59
PS+ V+ + E +TL +HI WGLW + Y N ++F++ EYA RF Y KK+
Sbjct: 348 PSQQIVHIMTKAVEVFTLISHITWGLWSIARTPGYQPNSVEFDFTEYANTRFTHYLQKKK 407
Query: 60 ELLSSSTI 67
EL+ +
Sbjct: 408 ELIDQGIL 415
>pdb|1NW1|A Chain A, Crystal Structure Of Choline Kinase
pdb|1NW1|B Chain B, Crystal Structure Of Choline Kinase
Length = 429
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 11 LVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQEL 61
LV + + +H FWG+WGL+ ++ + F + +Y R R Y+ KQ L
Sbjct: 372 LVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRLSLYFKHKQLL 422
>pdb|3C5I|A Chain A, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|B Chain B, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|C Chain C, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|D Chain D, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
Length = 369
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 3 PSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKI--DFNYKEYARQRFQQYWMKKQE 60
P+ ++++++ E L H+ WG W +I Y K +F++ YA QR + Y +K+
Sbjct: 299 PTPKLIDEILEAVEVQALGAHLLWGFWSIIRGYQTKSYNEFDFFLYAEQRLKMYDDQKEY 358
Query: 61 LLSSSTIR 68
L+S++ I+
Sbjct: 359 LISNNIIK 366
>pdb|2QG7|A Chain A, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|B Chain B, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|D Chain D, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|E Chain E, Plasmodium Vivax Ethanolamine Kinase Pv091845
Length = 458
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 5 ETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRF 51
E +NQL+ + + + + +HI WGLW L+ + IDF++ Y R
Sbjct: 400 EELINQLIREIQPFYICSHINWGLWSLLQGMHSSIDFDFINYGMTRL 446
>pdb|3FI8|A Chain A, Crystal Structure Of Choline Kinase From Plasmodium
Falciparum, Pf14_0020
Length = 362
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 8 VNQLVDDAEKYTLANHIFWGLWGLISAYVNKI--DFNYKEYARQRFQQYWMKKQELLSSS 65
++Q ++ E L H+ W W +I Y K +F++ YA++R + Y +KQ L+S +
Sbjct: 296 IDQFLEAIEVQALGLHLIWAFWSIIRGYQTKSYNEFDFFLYAKERLKMYDEQKQYLMSKN 355
Query: 66 TIR 68
I+
Sbjct: 356 IIK 358
>pdb|3RCC|A Chain A, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|B Chain B, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|C Chain C, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|D Chain D, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|E Chain E, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|F Chain F, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|G Chain G, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|H Chain H, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|I Chain I, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|J Chain J, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|K Chain K, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|L Chain L, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|M Chain M, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|N Chain N, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|O Chain O, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|P Chain P, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|Q Chain Q, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|R Chain R, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
Length = 160
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 9 NQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQEL 61
NQ++ Y LA+H +GL G +K+ F+ E+A++ + Y K ++
Sbjct: 48 NQIMGGPNNYALASHHVFGLTG-----SSKMLFSPLEHAKKGMKVYLTDKSKV 95
>pdb|1PVX|A Chain A, Do-1,4-Beta-Xylanase, Room Temperature, Ph 4.5
Length = 194
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 47 ARQRFQQYWMKKQELLSSSTIRQKINVNGHVSISLKKVSD 86
Q F QYW +Q+ SS T++ + + S L D
Sbjct: 130 GTQTFNQYWSVRQDKRSSGTVQTGCHFDAWASAGLNVTGD 169
>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
Anosmin-1
Length = 680
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 56 MKKQELLSSSTIRQKINVNGHVSISLKKVS 85
+ K E LS+S I Q +N+ GH S + K +
Sbjct: 525 LAKPENLSASFIVQDVNITGHFSWKMAKAN 554
>pdb|3VUO|A Chain A, Crystal Structure Of Nontoxic Nonhemagglutinin
Subcomponent (Ntnha) From Clostridium Botulinum Serotype
D Strain 4947
Length = 1196
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 1 KQPSETEVNQLVDDAEKYTLA------NHIFWGLWGLISAYVNKIDFNY-----KEYARQ 49
K+ + +E N +DD L N+ + ++ Y KI FN+ EY Q
Sbjct: 620 KKDNLSEPNIEIDDIPDSLLGLSFKDLNNKLYEIYSKNRVYFRKIYFNFLDQWWTEYYSQ 679
Query: 50 RFQQYWMKKQELLSSSTIRQKINVNGHVSIS 80
F+ M KQ +L+ ++ ++I N +S
Sbjct: 680 YFELICMAKQSILAQESVVKQIIQNKFTDLS 710
>pdb|3ECT|A Chain A, Crystal Structure Of The Hexapeptide-repeat Containing-
Acetyltransferase Vca0836 From Vibrio Cholerae
pdb|3NZ2|A Chain A, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|B Chain B, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|C Chain C, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|D Chain D, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|E Chain E, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|F Chain F, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|G Chain G, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|H Chain H, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|I Chain I, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|J Chain J, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|K Chain K, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|L Chain L, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
Length = 195
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 7 EVNQLVDDAEKYTLANHIFWGL 28
E+NQ +D+AE+Y L +F L
Sbjct: 38 EINQSLDEAERYALQRELFGHL 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,397,219
Number of Sequences: 62578
Number of extensions: 77212
Number of successful extensions: 147
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 19
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)