Query 041666
Match_columns 87
No_of_seqs 104 out of 417
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:27:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00296 choline kinase; Provi 99.8 2.8E-19 6E-24 141.4 7.7 67 3-69 371-439 (442)
2 KOG4720 Ethanolamine kinase [L 99.8 1.4E-19 3E-24 140.4 5.4 65 1-65 324-388 (391)
3 PLN02236 choline kinase 99.7 8.4E-18 1.8E-22 128.2 7.7 63 2-64 282-344 (344)
4 PLN02421 phosphotransferase, a 99.7 3.9E-17 8.5E-22 123.6 7.9 62 3-64 259-320 (330)
5 KOG2686 Choline kinase [Cell w 99.6 7.6E-16 1.6E-20 120.4 6.4 62 2-63 299-361 (366)
6 PTZ00384 choline kinase; Provi 99.6 5.5E-15 1.2E-19 115.2 7.4 66 3-68 313-382 (383)
7 cd05156 ChoK_euk Choline Kinas 98.4 1.9E-07 4.1E-12 68.5 3.4 32 2-33 271-302 (302)
8 COG0510 ycfN Thiamine kinase a 88.3 1.2 2.6E-05 33.4 5.0 45 15-62 220-264 (269)
9 TIGR02721 ycfN_thiK thiamine k 86.8 2.2 4.7E-05 30.6 5.5 42 9-51 211-252 (256)
10 TIGR03758 conj_TIGR03758 integ 43.6 54 0.0012 20.1 3.8 22 15-36 23-44 (65)
11 PF10961 DUF2763: Protein of u 32.6 38 0.00083 21.8 1.9 17 19-35 19-35 (91)
12 PF14293 YWFCY: YWFCY protein 31.2 1.3E+02 0.0027 18.3 4.1 30 8-37 12-41 (61)
13 PF05277 DUF726: Protein of un 20.0 4.5E+02 0.0097 20.8 6.9 74 6-79 155-230 (345)
No 1
>PTZ00296 choline kinase; Provisional
Probab=99.79 E-value=2.8e-19 Score=141.40 Aligned_cols=67 Identities=30% Similarity=0.706 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh--hcCCcCCHHHHHHHHHHHHHHHHHhhhhcccccc
Q 041666 3 PSETEVNQLVDDAEKYTLANHIFWGLWGLISAY--VNKIDFNYKEYARQRFQQYWMKKQELLSSSTIRQ 69 (87)
Q Consensus 3 ~se~eV~~L~~eV~~f~l~shL~W~lWsliQa~--~s~i~FDy~~Ya~~Rl~~y~~~K~~l~~~~~~~~ 69 (87)
+++++|++|+.||+.|+++||||||+||+||+. .+.|+|||++||..|+..|++.|+.|++.+++..
T Consensus 371 ~~~~~v~~l~~ev~~f~l~shl~W~lWaiiqa~~~~s~idFDy~~Ya~~R~~~Y~~~k~~~~~~~~~~~ 439 (442)
T PTZ00296 371 PNPKIIDQILEAVEVQALGAHLLWGFWSIIRGYQTKSYNEFDFFLYAKERFKMYDEQKEYLISNNIIKT 439 (442)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 456789999999999999999999999999997 4679999999999999999999999999988763
No 2
>KOG4720 consensus Ethanolamine kinase [Lipid transport and metabolism]
Probab=99.78 E-value=1.4e-19 Score=140.38 Aligned_cols=65 Identities=40% Similarity=0.754 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHHHHhhhhcc
Q 041666 1 KQPSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSSS 65 (87)
Q Consensus 1 ~~~se~eV~~L~~eV~~f~l~shL~W~lWsliQa~~s~i~FDy~~Ya~~Rl~~y~~~K~~l~~~~ 65 (87)
+++|++||+.|++||+.|+|+||+||++||++||..|+|+|||++||..|+++|.++|++.++..
T Consensus 324 ~evs~~eVe~lfvqvn~FalAsHlfWavWAllQA~~StIdFdylgYa~lRyneY~k~k~~~~sl~ 388 (391)
T KOG4720|consen 324 KEVSDTEVETLFVQVNQFALASHLFWAVWALLQAQNSTIDFDYLGYAFLRYNEYQKRKPEVLSLI 388 (391)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccchhhHHHHHHHhhccCcceeeec
Confidence 47999999999999999999999999999999999999999999999999999999999988753
No 3
>PLN02236 choline kinase
Probab=99.73 E-value=8.4e-18 Score=128.18 Aligned_cols=63 Identities=71% Similarity=1.320 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHHHHhhhhc
Q 041666 2 QPSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSS 64 (87)
Q Consensus 2 ~~se~eV~~L~~eV~~f~l~shL~W~lWsliQa~~s~i~FDy~~Ya~~Rl~~y~~~K~~l~~~ 64 (87)
++++++++.++.+|+.|++++||+|++||++|+..|+++|||+.||..|+..|++.|+++++.
T Consensus 282 ~~~~~~~~~l~~~v~~~~~~~~l~W~lWa~iq~~~s~~~fdy~~Ya~~R~~~y~~~k~~~~~~ 344 (344)
T PLN02236 282 EPSDEEVEQLLDDVEKYTLASHLFWGLWGIISGHVNKIDFDYMEYARQRFEQYWLRKPELLGS 344 (344)
T ss_pred CchHHHHHHHHHHHHHHhhHhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 567889999999999999999999999999999999999999999999999999999998863
No 4
>PLN02421 phosphotransferase, alcohol group as acceptor/kinase
Probab=99.70 E-value=3.9e-17 Score=123.60 Aligned_cols=62 Identities=34% Similarity=0.746 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHHHHhhhhc
Q 041666 3 PSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSS 64 (87)
Q Consensus 3 ~se~eV~~L~~eV~~f~l~shL~W~lWsliQa~~s~i~FDy~~Ya~~Rl~~y~~~K~~l~~~ 64 (87)
++++++++++.||+.|++++||+|++||++|+..|+|+|||+.||..|++.|++.|+++++.
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~l~W~lWa~iq~~~s~i~fdf~~ya~~R~~~y~~~k~~~~~~ 320 (330)
T PLN02421 259 VSDAELEELFVETNFYALASHLYWAIWAIVQAKMSPIDFDYLGYFFLRYKEYKRQKEKLLSL 320 (330)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCcCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 57889999999999999999999999999999999999999999999999999999999876
No 5
>KOG2686 consensus Choline kinase [Cell wall/membrane/envelope biogenesis]
Probab=99.62 E-value=7.6e-16 Score=120.38 Aligned_cols=62 Identities=45% Similarity=0.897 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhc-CCcCCHHHHHHHHHHHHHHHHHhhhh
Q 041666 2 QPSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVN-KIDFNYKEYARQRFQQYWMKKQELLS 63 (87)
Q Consensus 2 ~~se~eV~~L~~eV~~f~l~shL~W~lWsliQa~~s-~i~FDy~~Ya~~Rl~~y~~~K~~l~~ 63 (87)
++.+.+|+.|++|++.|+|++|||||+||++|+..+ .++|||.+||+.|+..|++.|+.|..
T Consensus 299 ~~~~~ev~~L~~e~~~~~p~shlfW~LWsi~q~~~~~~i~fdy~~y~r~rf~~y~~~k~~L~~ 361 (366)
T KOG2686|consen 299 EPREKEVEKLLKEIRFFTPASHLFWGLWSILQALVLHKIEFDYMEYARDRFAVYFHLKPRLGA 361 (366)
T ss_pred CchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccccccChHHHHHHHHHHHhccchhhcc
Confidence 678999999999999999999999999999999998 89999999999999999999998864
No 6
>PTZ00384 choline kinase; Provisional
Probab=99.57 E-value=5.5e-15 Score=115.18 Aligned_cols=66 Identities=20% Similarity=0.474 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhh----cCCcCCHHHHHHHHHHHHHHHHHhhhhccccc
Q 041666 3 PSETEVNQLVDDAEKYTLANHIFWGLWGLISAYV----NKIDFNYKEYARQRFQQYWMKKQELLSSSTIR 68 (87)
Q Consensus 3 ~se~eV~~L~~eV~~f~l~shL~W~lWsliQa~~----s~i~FDy~~Ya~~Rl~~y~~~K~~l~~~~~~~ 68 (87)
|++++|+.|+.||+.|+++||+|||+||+||+.. +..++||.+||..|+++|++.-+++.+-.|||
T Consensus 313 ~~~~~~~~l~~~v~~~~l~sh~~W~lW~iIq~~~~~~~~~~~~~f~~y~~~r~~~~~~~~~~~~~~~~~~ 382 (383)
T PTZ00384 313 PSDDLVKEFLQSLEIHTLGVNLFWTYWGIVMNDKPKNELSKPVKFEAYAKFQYNLFKNNLRKLTDNKIVN 382 (383)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHHHHHhccccccc
Confidence 6789999999999999999999999999999974 23477889999999999999988888877765
No 7
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=98.42 E-value=1.9e-07 Score=68.55 Aligned_cols=32 Identities=44% Similarity=1.011 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 041666 2 QPSETEVNQLVDDAEKYTLANHIFWGLWGLIS 33 (87)
Q Consensus 2 ~~se~eV~~L~~eV~~f~l~shL~W~lWsliQ 33 (87)
++++.++++++.||+.|.+++||+|++||+||
T Consensus 271 ~~~~~~~~~~~~~v~~~~~~~~~~W~lW~~~q 302 (302)
T cd05156 271 EEREKEVKDLLEEVEIFTPASHLFWALWGIIQ 302 (302)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhHHHHHHHhcC
Confidence 46788999999999999999999999999998
No 8
>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]
Probab=88.31 E-value=1.2 Score=33.36 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=35.8
Q ss_pred HhhhhhhhHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHHHHhhh
Q 041666 15 AEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELL 62 (87)
Q Consensus 15 V~~f~l~shL~W~lWsliQa~~s~i~FDy~~Ya~~Rl~~y~~~K~~l~ 62 (87)
|..+.+...+.|.+|+..|.... .|+..|+..|+.+..+.-+++.
T Consensus 220 ~~~~~i~~~~~W~l~~~~~~~~~---~~~~~~~~k~~~~~~~~l~~~~ 264 (269)
T COG0510 220 VLIYKILQKFLWYLWTKLQEQIL---EDFGWYDKKRLNRAIDLLENLR 264 (269)
T ss_pred hHHHHHHHHhHHHHHHHHHHHhh---hhhhhhhHHHHHHHHHHHHHHH
Confidence 46778899999999999999877 6788888888887755544443
No 9
>TIGR02721 ycfN_thiK thiamine kinase. Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.
Probab=86.84 E-value=2.2 Score=30.55 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=32.5
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHhhhcCCcCCHHHHHHHHH
Q 041666 9 NQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRF 51 (87)
Q Consensus 9 ~~L~~eV~~f~l~shL~W~lWsliQa~~s~i~FDy~~Ya~~Rl 51 (87)
..+..++..|.++++++|++|..++..... +=.|..-|....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~a~~~~ 252 (256)
T TIGR02721 211 SVLWRQVKAWQPWVDYMAALWFELRWQQTG-DPQFLELAQELR 252 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHH
Confidence 678899999999999999999999887654 333555555443
No 10
>TIGR03758 conj_TIGR03758 integrating conjugative element protein, PFL_4701 family. Members of this family of small, hydrophobic proteins are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.55 E-value=54 Score=20.11 Aligned_cols=22 Identities=36% Similarity=0.779 Sum_probs=17.4
Q ss_pred HhhhhhhhHHHHHHHHHHHhhh
Q 041666 15 AEKYTLANHIFWGLWGLISAYV 36 (87)
Q Consensus 15 V~~f~l~shL~W~lWsliQa~~ 36 (87)
+--+-++.-|+|+.|+++.+..
T Consensus 23 ~lG~~~~vllLW~aWal~~ayr 44 (65)
T TIGR03758 23 ILGLVLAVLFLWGAWALLTAYR 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678889999999998843
No 11
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=32.62 E-value=38 Score=21.79 Aligned_cols=17 Identities=24% Similarity=0.755 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHHHhh
Q 041666 19 TLANHIFWGLWGLISAY 35 (87)
Q Consensus 19 ~l~shL~W~lWsliQa~ 35 (87)
+.++.+||++|-+|...
T Consensus 19 s~I~d~Fwgi~~fI~lF 35 (91)
T PF10961_consen 19 SRITDFFWGIINFIVLF 35 (91)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45889999999888653
No 12
>PF14293 YWFCY: YWFCY protein
Probab=31.21 E-value=1.3e+02 Score=18.35 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHhhhc
Q 041666 8 VNQLVDDAEKYTLANHIFWGLWGLISAYVN 37 (87)
Q Consensus 8 V~~L~~eV~~f~l~shL~W~lWsliQa~~s 37 (87)
|-.+...|-.+-++-|+||.+.+..+...-
T Consensus 12 Imdf~R~iSI~~l~ih~Y~~CY~af~~wg~ 41 (61)
T PF14293_consen 12 IMDFMRAISILFLVIHFYWFCYEAFQEWGL 41 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445667777888899999999998887543
No 13
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=20.02 E-value=4.5e+02 Score=20.78 Aligned_cols=74 Identities=16% Similarity=0.079 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHH-HHHHHhhhcCCcCCHHHHHHHHHHHHHHHHHhhhhcccccc-ccccccccch
Q 041666 6 TEVNQLVDDAEKYTLANHIFWGL-WGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSSSTIRQ-KINVNGHVSI 79 (87)
Q Consensus 6 ~eV~~L~~eV~~f~l~shL~W~l-WsliQa~~s~i~FDy~~Ya~~Rl~~y~~~K~~l~~~~~~~~-~~~~~~~~~~ 79 (87)
..+.....|+-+.+.++.|.-++ |-+.-...+.+--+-+.-+..|-+..-+.-.+.+..+...+ |++-.||-+-
T Consensus 155 ~~~~~~~~~~l~~t~l~~l~~Al~~P~~Llk~~~~idnpw~~a~~rA~~aG~~LA~~L~~~~~G~RpVtLvG~SLG 230 (345)
T PF05277_consen 155 EAWSQAAQEILKRTILAGLMAALAWPAALLKAASLIDNPWSVAKDRAEKAGKVLADALLSRNQGERPVTLVGHSLG 230 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeeccc
Confidence 34556667787888888888886 76555455555445788899999888887777777776666 9998888553
Done!