Query 041666
Match_columns 87
No_of_seqs 104 out of 417
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 16:04:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g15_A CK, chetk-alpha, cholin 99.8 2.5E-19 8.5E-24 135.7 8.0 57 5-61 343-399 (401)
2 3feg_A Choline/ethanolamine ki 99.7 3.3E-18 1.1E-22 130.9 8.2 58 7-64 318-375 (379)
3 3mes_A Choline kinase; malaria 99.7 4.1E-18 1.4E-22 132.2 6.6 66 2-67 347-415 (424)
4 3f2s_A CK, chetk-alpha, cholin 99.7 8.6E-18 3E-22 130.0 8.3 57 6-62 344-400 (401)
5 3c5i_A Choline kinase; choline 99.6 6.2E-16 2.1E-20 114.3 8.3 66 3-68 299-366 (369)
6 1nw1_A Choline kinase (49.2 KD 99.6 4.2E-15 1.4E-19 114.0 7.9 60 4-64 365-424 (429)
7 2qg7_A Ethanolamine kinase PV0 99.4 2.2E-13 7.4E-18 106.2 5.4 55 4-58 399-453 (458)
8 3dxq_A Choline/ethanolamine ki 99.1 4.1E-10 1.4E-14 80.9 7.2 49 11-59 239-287 (301)
9 2w84_A Peroxisomal membrane pr 29.5 29 0.001 20.8 1.9 26 1-26 45-70 (70)
10 2nr1_A NR1 M2, M2; receptor, s 24.4 52 0.0018 16.3 1.9 14 21-34 9-22 (27)
11 3fbl_A Putative uncharacterize 23.4 60 0.0021 19.4 2.5 44 12-69 8-51 (82)
No 1
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=99.78 E-value=2.5e-19 Score=135.70 Aligned_cols=57 Identities=32% Similarity=0.849 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHHHHhh
Q 041666 5 ETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQEL 61 (87)
Q Consensus 5 e~eV~~L~~eV~~f~l~shL~W~lWsliQa~~s~i~FDy~~Ya~~Rl~~y~~~K~~l 61 (87)
+.++++|+.||+.|++++||+|++||+||+..|.|+|||++||..||++|++.|++|
T Consensus 343 ~~~~~~l~~ev~~~~~~~~l~W~~Waiiq~~~s~idFdy~~Ya~~Rl~~Y~~~k~~l 399 (401)
T 3g15_A 343 SIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYAQARFDAYFHQKRKL 399 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 457899999999999999999999999999999999999999999999999999987
No 2
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=99.74 E-value=3.3e-18 Score=130.88 Aligned_cols=58 Identities=40% Similarity=0.859 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHHHHhhhhc
Q 041666 7 EVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSS 64 (87)
Q Consensus 7 eV~~L~~eV~~f~l~shL~W~lWsliQa~~s~i~FDy~~Ya~~Rl~~y~~~K~~l~~~ 64 (87)
++++|+.||+.|++++||||++||+||+..|+|+|||++||..||++|++.|+++...
T Consensus 318 ~~e~l~~~v~~~~~~~~l~W~lWaliq~~~s~idFdy~~Ya~~R~~~y~~~k~~~~~~ 375 (379)
T 3feg_A 318 LEEDLLVEVSRYALASHFFWGLWSILQASMSTIEFGYLDYAQSRFQFYFQQKGQLTSV 375 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSSSCHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHhhhhhhcC
Confidence 3589999999999999999999999999999999999999999999999999999765
No 3
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=99.73 E-value=4.1e-18 Score=132.23 Aligned_cols=66 Identities=36% Similarity=0.797 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHH--hhhcC-CcCCHHHHHHHHHHHHHHHHHhhhhcccc
Q 041666 2 QPSETEVNQLVDDAEKYTLANHIFWGLWGLIS--AYVNK-IDFNYKEYARQRFQQYWMKKQELLSSSTI 67 (87)
Q Consensus 2 ~~se~eV~~L~~eV~~f~l~shL~W~lWsliQ--a~~s~-i~FDy~~Ya~~Rl~~y~~~K~~l~~~~~~ 67 (87)
.|+++++++|+.||+.|++++|++|++||++| +..|+ |+|||++||..||++|++.|+++++.+++
T Consensus 347 ~~~~~e~~~l~~~v~~~~~~~~l~W~lWaliq~~~~~s~~i~fdy~~Ya~~R~~~y~~~k~~~~~~~~~ 415 (424)
T 3mes_A 347 MPSQQIVHIMTKAVEVFTLISHITWGLWSIARTPGYQPNSVEFDFTEYANTRFTHYLQKKKELIDQGIL 415 (424)
T ss_dssp CTTSHHHHHHHHHHHHTHHHHHHHHHHHHHC---------CCCCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccCCCcCCChHHHHHHHHHHHHHHHHHhccCCCc
Confidence 57889999999999999999999999999999 99999 99999999999999999999999998764
No 4
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=99.73 E-value=8.6e-18 Score=130.02 Aligned_cols=57 Identities=32% Similarity=0.822 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHHHHhhh
Q 041666 6 TEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELL 62 (87)
Q Consensus 6 ~eV~~L~~eV~~f~l~shL~W~lWsliQa~~s~i~FDy~~Ya~~Rl~~y~~~K~~l~ 62 (87)
.++++|+.||+.|++++||||++||+||+..|+|+|||++||..||++|++.|++|-
T Consensus 344 ~~~~~l~~ev~~f~l~s~l~W~lWaliq~~~s~idFdy~~Ya~~R~~~y~~~k~~l~ 400 (401)
T 3f2s_A 344 IIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYAQARFDAYFHQKRKLG 400 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 357889999999999999999999999999999999999999999999999999874
No 5
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=99.63 E-value=6.2e-16 Score=114.27 Aligned_cols=66 Identities=29% Similarity=0.678 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhh--cCCcCCHHHHHHHHHHHHHHHHHhhhhccccc
Q 041666 3 PSETEVNQLVDDAEKYTLANHIFWGLWGLISAYV--NKIDFNYKEYARQRFQQYWMKKQELLSSSTIR 68 (87)
Q Consensus 3 ~se~eV~~L~~eV~~f~l~shL~W~lWsliQa~~--s~i~FDy~~Ya~~Rl~~y~~~K~~l~~~~~~~ 68 (87)
+++++++.|+.+|+.|++++|++|++||++|+.. +.++|||..||..||++|++.|++|++.+++-
T Consensus 299 ~~~~~~~~l~~~~~~~~~~~~l~W~lWa~~q~~~~~~~~~fdy~~ya~~r~~~y~~~k~~~~~~~~~~ 366 (369)
T 3c5i_A 299 PTPKLIDEILEAVEVQALGAHLLWGFWSIIRGYQTKSYNEFDFFLYAEQRLKMYDDQKEYLISNNIIK 366 (369)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 6889999999999999999999999999999987 45699999999999999999999999987764
No 6
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=99.57 E-value=4.2e-15 Score=114.00 Aligned_cols=60 Identities=28% Similarity=0.749 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHHHHhhhhc
Q 041666 4 SETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSS 64 (87)
Q Consensus 4 se~eV~~L~~eV~~f~l~shL~W~lWsliQa~~s~i~FDy~~Ya~~Rl~~y~~~K~~l~~~ 64 (87)
+++++++++.+|..|++++|++|++|+++|+..+.++|||+.||..||.+|++.| +++..
T Consensus 365 ~~~~~~~l~~~v~~~~~~~~l~W~lWaliq~~~s~~dfdy~~ya~~R~~~y~~~k-~~~~~ 424 (429)
T 1nw1_A 365 LYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRLSLYFKHK-QLLKN 424 (429)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHTH-HHHHT
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCcCCCCCcCHHHHHHHHHHHHHHHH-HHHhh
Confidence 5678899999999999999999999999999999999999999999999999999 66654
No 7
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=99.40 E-value=2.2e-13 Score=106.23 Aligned_cols=55 Identities=29% Similarity=0.683 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHHH
Q 041666 4 SETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKK 58 (87)
Q Consensus 4 se~eV~~L~~eV~~f~l~shL~W~lWsliQa~~s~i~FDy~~Ya~~Rl~~y~~~K 58 (87)
+++++++|+.||..|.+++|++|++|+++|+..+.++|||+.||..||++|+..+
T Consensus 399 ~~~e~~~L~~ev~~~~~~~~l~W~lWaliq~~~s~idfdy~~ya~~Rl~~y~~~~ 453 (458)
T 2qg7_A 399 DEELINQLIREIQPFYICSHINWGLWSLLQGMHSSIDFDFINYGMTRLTASCLPI 453 (458)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHTTSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999999999999999999997643
No 8
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=99.05 E-value=4.1e-10 Score=80.94 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=44.5
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHHHH
Q 041666 11 LVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQ 59 (87)
Q Consensus 11 L~~eV~~f~l~shL~W~lWsliQa~~s~i~FDy~~Ya~~Rl~~y~~~K~ 59 (87)
...++..|.+++|++|++|+++|+..+.++|||..||..|+++|+....
T Consensus 239 ~~~~~~~~~~~~~~~w~~W~~~q~~~~~~~~d~~~ya~~r~~~~~~~~~ 287 (301)
T 3dxq_A 239 ERGRVVIYKAMCDLLWTLWGLIQLANDNPVDDFRAYADGRFARCKALME 287 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHhc
Confidence 3567889999999999999999999999999999999999999987643
No 9
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=29.48 E-value=29 Score=20.76 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHH
Q 041666 1 KQPSETEVNQLVDDAEKYTLANHIFW 26 (87)
Q Consensus 1 ~~~se~eV~~L~~eV~~f~l~shL~W 26 (87)
|-.|++||+..+.++........-+|
T Consensus 45 KGLt~eEI~~Al~ra~~~~~~p~~~~ 70 (70)
T 2w84_A 45 KGLTDEEIDMAFQQSGTAADEPSSLW 70 (70)
T ss_dssp TTCCHHHHHHHHHHHTCCCCC-----
T ss_pred cCCCHHHHHHHHHHccCCCCCCcccC
Confidence 34689999999999887776665555
No 10
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=24.42 E-value=52 Score=16.25 Aligned_cols=14 Identities=21% Similarity=0.719 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHh
Q 041666 21 ANHIFWGLWGLISA 34 (87)
Q Consensus 21 ~shL~W~lWsliQa 34 (87)
++.-.|-.|+++-.
T Consensus 9 l~aa~wF~WGvlln 22 (27)
T 2nr1_A 9 LSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhee
Confidence 45567999998753
No 11
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=23.37 E-value=60 Score=19.42 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=30.2
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHHHHhhhhcccccc
Q 041666 12 VDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSSSTIRQ 69 (87)
Q Consensus 12 ~~eV~~f~l~shL~W~lWsliQa~~s~i~FDy~~Ya~~Rl~~y~~~K~~l~~~~~~~~ 69 (87)
+.|+++-....++-||. |..|+..-+..|.++|.---++..|.+
T Consensus 8 ikeicktdgipnikwgm--------------yiafgekllksylkmkagsassdmiae 51 (82)
T 3fbl_A 8 IKEICKTDGIPNIKWGM--------------YIAFGEKLLKSYLKMKAGSASSDMIAE 51 (82)
T ss_dssp HHHHHHHTTCCGGGHHH--------------HHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHccCCCCcchhHH--------------HHHHHHHHHHHHHHHhccCccHHHHHH
Confidence 46777777777777775 566777778888888766555544444
Done!