Query 041667
Match_columns 659
No_of_seqs 159 out of 705
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:28:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 3E-106 7E-111 864.8 37.8 365 284-659 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.1 0.017 3.6E-07 59.3 15.7 191 361-609 33-225 (247)
3 TIGR00740 methyltransferase, p 96.3 0.15 3.2E-06 51.7 15.5 106 394-526 53-159 (239)
4 TIGR02752 MenG_heptapren 2-hep 95.4 0.79 1.7E-05 45.9 16.2 102 396-526 47-149 (231)
5 PLN02233 ubiquinone biosynthes 94.5 1.8 3.9E-05 45.1 16.5 121 395-542 74-195 (261)
6 PF01209 Ubie_methyltran: ubiE 93.4 0.95 2.1E-05 46.7 11.8 171 393-612 46-218 (233)
7 TIGR02716 C20_methyl_CrtF C-20 93.3 1.8 3.9E-05 45.7 14.0 119 375-531 138-258 (306)
8 PRK06202 hypothetical protein; 90.8 2.3 5.1E-05 42.9 11.0 105 394-525 60-164 (232)
9 PF13847 Methyltransf_31: Meth 90.3 3.1 6.7E-05 39.1 10.6 105 394-526 3-108 (152)
10 PRK14103 trans-aconitate 2-met 90.1 17 0.00036 37.4 16.6 96 394-527 29-125 (255)
11 PF09243 Rsm22: Mitochondrial 87.3 4.2 9.2E-05 42.9 10.2 143 370-545 13-156 (274)
12 PRK12335 tellurite resistance 86.4 9.6 0.00021 40.1 12.3 96 397-524 123-219 (287)
13 PF13489 Methyltransf_23: Meth 86.4 11 0.00024 34.6 11.5 96 393-530 21-118 (161)
14 PLN02585 magnesium protoporphy 86.4 9.4 0.0002 41.4 12.4 103 394-526 144-248 (315)
15 TIGR01934 MenG_MenH_UbiE ubiqu 86.1 35 0.00077 33.3 16.9 105 394-529 39-145 (223)
16 TIGR03438 probable methyltrans 85.5 8.6 0.00019 40.9 11.5 113 396-530 65-179 (301)
17 PLN02396 hexaprenyldihydroxybe 84.5 17 0.00037 39.6 13.3 100 395-527 132-234 (322)
18 TIGR00477 tehB tellurite resis 84.3 13 0.00029 36.8 11.6 112 373-524 17-129 (195)
19 smart00138 MeTrc Methyltransfe 83.4 2.9 6.2E-05 43.8 6.7 52 393-447 98-150 (264)
20 PRK00216 ubiE ubiquinone/menaq 83.3 50 0.0011 32.6 16.4 105 394-526 51-156 (239)
21 PF03291 Pox_MCEL: mRNA cappin 82.4 4.7 0.0001 44.0 8.1 116 394-525 62-183 (331)
22 PF12847 Methyltransf_18: Meth 81.8 2.9 6.4E-05 36.5 5.2 105 397-527 4-110 (112)
23 PRK05134 bifunctional 3-demeth 81.8 39 0.00085 33.8 14.0 120 372-527 30-150 (233)
24 PTZ00098 phosphoethanolamine N 81.4 23 0.00051 36.9 12.6 120 368-526 34-154 (263)
25 PRK11207 tellurite resistance 80.5 25 0.00053 35.0 11.8 113 373-525 17-131 (197)
26 PLN02336 phosphoethanolamine N 79.5 20 0.00042 40.3 12.0 101 396-526 39-140 (475)
27 PRK11036 putative S-adenosyl-L 79.1 15 0.00032 37.8 10.1 103 395-526 45-147 (255)
28 COG2226 UbiE Methylase involve 78.3 94 0.002 32.7 16.6 155 363-559 27-185 (238)
29 PLN02244 tocopherol O-methyltr 78.1 21 0.00046 38.7 11.4 99 396-526 120-221 (340)
30 COG2227 UbiG 2-polyprenyl-3-me 77.9 6.5 0.00014 41.4 7.0 100 394-526 59-159 (243)
31 PRK08317 hypothetical protein; 77.7 74 0.0016 31.1 15.6 107 394-529 19-126 (241)
32 PF13649 Methyltransf_25: Meth 77.4 5.1 0.00011 35.0 5.3 97 398-520 1-99 (101)
33 PRK01683 trans-aconitate 2-met 74.8 26 0.00056 35.8 10.4 111 375-528 20-130 (258)
34 PLN02336 phosphoethanolamine N 74.0 44 0.00095 37.6 12.8 101 395-527 267-368 (475)
35 TIGR02081 metW methionine bios 73.7 39 0.00084 33.2 11.0 31 396-435 15-45 (194)
36 TIGR02021 BchM-ChlM magnesium 72.4 47 0.001 33.1 11.4 117 370-526 37-156 (219)
37 TIGR03587 Pse_Me-ase pseudamin 72.3 27 0.00059 35.2 9.7 101 396-530 45-145 (204)
38 PF02353 CMAS: Mycolic acid cy 72.1 15 0.00033 38.9 8.2 102 395-527 63-165 (273)
39 PRK05785 hypothetical protein; 71.2 66 0.0014 32.9 12.3 93 395-527 52-145 (226)
40 TIGR02072 BioC biotin biosynth 68.7 1.2E+02 0.0027 29.7 16.1 100 394-527 34-134 (240)
41 TIGR00138 gidB 16S rRNA methyl 68.0 28 0.0006 34.5 8.5 98 395-527 43-141 (181)
42 TIGR00452 methyltransferase, p 62.7 81 0.0017 34.3 11.5 102 396-527 123-224 (314)
43 PRK15068 tRNA mo(5)U34 methylt 60.4 1.9E+02 0.0042 31.3 13.9 102 396-527 124-225 (322)
44 TIGR03439 methyl_EasF probable 60.1 79 0.0017 34.5 10.9 142 395-554 77-234 (319)
45 smart00828 PKS_MT Methyltransf 59.6 94 0.002 30.9 10.6 100 397-526 2-102 (224)
46 PF00891 Methyltransf_2: O-met 56.7 36 0.00078 34.5 7.2 102 396-535 102-207 (241)
47 PF08241 Methyltransf_11: Meth 56.2 52 0.0011 27.1 7.0 93 399-525 1-94 (95)
48 COG2230 Cfa Cyclopropane fatty 56.1 1.2E+02 0.0025 33.0 11.1 119 373-526 55-174 (283)
49 PRK10660 tilS tRNA(Ile)-lysidi 54.1 3.5E+02 0.0076 30.7 15.1 66 401-467 20-85 (436)
50 PF03848 TehB: Tellurite resis 53.1 1.4E+02 0.003 30.4 10.6 111 376-526 20-131 (192)
51 PRK15001 SAM-dependent 23S rib 52.6 76 0.0016 35.5 9.4 107 397-527 231-339 (378)
52 PRK11873 arsM arsenite S-adeno 50.5 2.2E+02 0.0047 29.4 11.9 100 396-526 79-181 (272)
53 PRK06922 hypothetical protein; 47.4 1.4E+02 0.0029 36.2 10.8 109 396-526 420-535 (677)
54 COG0075 Serine-pyruvate aminot 46.7 1.9E+02 0.0041 32.7 11.3 100 364-481 86-185 (383)
55 PF07521 RMMBL: RNA-metabolisi 43.2 47 0.001 25.6 4.3 40 484-528 1-40 (43)
56 PRK10258 biotin biosynthesis p 43.2 3.3E+02 0.0072 27.6 11.8 95 396-526 44-138 (251)
57 PF08242 Methyltransf_12: Meth 42.9 9.9 0.00022 32.8 0.6 30 399-436 1-30 (99)
58 PRK00107 gidB 16S rRNA methylt 42.6 3.6E+02 0.0079 27.0 13.7 97 396-527 47-144 (187)
59 PLN02446 (5-phosphoribosyl)-5- 42.4 35 0.00076 36.4 4.6 26 392-418 56-81 (262)
60 TIGR01626 ytfJ_HI0045 conserve 41.7 62 0.0013 32.7 6.1 113 394-518 59-182 (184)
61 PRK07580 Mg-protoporphyrin IX 40.5 2.7E+02 0.0058 27.5 10.4 98 394-525 63-163 (230)
62 PRK11705 cyclopropane fatty ac 38.8 3E+02 0.0065 30.7 11.4 96 396-526 169-265 (383)
63 TIGR03840 TMPT_Se_Te thiopurin 38.1 2.6E+02 0.0057 28.5 10.0 30 396-435 36-65 (213)
64 smart00650 rADc Ribosomal RNA 36.7 3.9E+02 0.0084 25.6 10.6 99 396-530 15-115 (169)
65 TIGR01983 UbiG ubiquinone bios 36.4 4.3E+02 0.0093 26.0 14.3 101 394-526 45-147 (224)
66 PRK13255 thiopurine S-methyltr 36.3 3.1E+02 0.0068 28.0 10.3 48 373-435 21-68 (218)
67 COG1341 Predicted GTPase or GT 34.8 1.4E+02 0.0029 34.0 7.8 80 484-578 173-253 (398)
68 PLN02232 ubiquinone biosynthes 34.1 4.3E+02 0.0093 25.3 11.3 34 487-528 47-82 (160)
69 TIGR02129 hisA_euk phosphoribo 32.9 76 0.0016 33.8 5.3 25 392-420 51-75 (253)
70 PRK00274 ksgA 16S ribosomal RN 32.4 3.1E+02 0.0067 28.8 9.8 61 361-435 12-73 (272)
71 COG4106 Tam Trans-aconitate me 31.8 1.8E+02 0.004 30.8 7.7 107 394-535 30-136 (257)
72 TIGR00091 tRNA (guanine-N(7)-) 31.7 2.1E+02 0.0046 28.2 8.0 113 395-526 17-130 (194)
73 PF06877 RraB: Regulator of ri 31.6 2.8E+02 0.0061 24.6 8.1 81 373-459 4-98 (104)
74 PLN02490 MPBQ/MSBQ methyltrans 31.1 3.7E+02 0.0079 29.8 10.4 100 394-526 113-213 (340)
75 COG0052 RpsB Ribosomal protein 30.5 1.2E+02 0.0026 32.3 6.2 54 394-464 36-95 (252)
76 PF13679 Methyltransf_32: Meth 29.4 1.3E+02 0.0027 28.4 5.7 41 392-436 23-63 (141)
77 TIGR00406 prmA ribosomal prote 28.3 7.3E+02 0.016 26.2 12.6 116 370-526 141-257 (288)
78 PRK09489 rsmC 16S ribosomal RN 27.4 7.5E+02 0.016 27.2 12.0 117 374-526 184-301 (342)
79 PRK14851 hypothetical protein; 27.2 1.9E+02 0.0041 35.0 7.8 129 376-527 56-217 (679)
80 PRK13944 protein-L-isoaspartat 26.4 6.6E+02 0.014 25.0 10.9 84 395-498 73-156 (205)
81 KOG4450 Uncharacterized conser 25.9 42 0.0009 33.3 1.8 15 200-215 73-87 (168)
82 PRK14968 putative methyltransf 25.8 5.7E+02 0.012 24.2 11.7 41 396-449 25-65 (188)
83 COG0123 AcuC Deacetylases, inc 25.5 51 0.0011 36.4 2.6 40 484-526 206-246 (340)
84 TIGR01716 RGG_Cterm transcript 25.0 1.4E+02 0.0031 29.6 5.5 55 284-338 127-182 (220)
85 TIGR03534 RF_mod_PrmC protein- 25.0 7E+02 0.015 24.9 10.9 78 395-493 88-165 (251)
86 PRK10909 rsmD 16S rRNA m(2)G96 24.6 7.5E+02 0.016 25.1 11.7 107 396-533 55-164 (199)
87 PTZ00254 40S ribosomal protein 23.8 2.3E+02 0.005 30.2 6.9 53 393-460 43-98 (249)
88 PRK03522 rumB 23S rRNA methylu 22.7 5.6E+02 0.012 27.4 9.8 98 396-527 175-273 (315)
89 TIGR02085 meth_trns_rumB 23S r 22.7 6E+02 0.013 28.1 10.3 97 397-527 236-333 (374)
90 PF11239 DUF3040: Protein of u 22.0 57 0.0012 28.4 1.8 17 208-224 8-24 (82)
91 PRK14024 phosphoribosyl isomer 21.7 1.3E+02 0.0029 31.0 4.7 28 392-420 45-74 (241)
92 TIGR00755 ksgA dimethyladenosi 21.5 8.8E+02 0.019 24.9 10.7 54 368-435 6-60 (253)
93 KOG4300 Predicted methyltransf 21.4 9.8E+02 0.021 25.5 10.6 120 393-544 75-197 (252)
94 PRK00121 trmB tRNA (guanine-N( 21.2 5.1E+02 0.011 25.8 8.6 110 394-526 40-154 (202)
95 PRK04020 rps2P 30S ribosomal p 21.1 2.1E+02 0.0045 29.6 5.8 71 367-461 20-95 (204)
96 TIGR02469 CbiT precorrin-6Y C5 20.7 3E+02 0.0064 24.0 6.1 41 397-448 22-62 (124)
97 COG2242 CobL Precorrin-6B meth 20.4 1.7E+02 0.0038 29.9 5.0 44 396-453 36-82 (187)
98 smart00857 Resolvase Resolvase 20.1 4.1E+02 0.0089 24.5 7.2 97 441-547 16-121 (148)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=3.1e-106 Score=864.80 Aligned_cols=365 Identities=38% Similarity=0.641 Sum_probs=341.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHhhccCCCCCC----Ccchh---ccchhHHHH
Q 041667 284 SKQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHENP----PPVAE---LFGKEHAES 356 (659)
Q Consensus 284 ~~qLLl~CAeAVa~gd~~~A~~iL~~L~~~aSp~Gd~~QRLAayFaeAL~aRl~~~~~~----~~~~~---l~~~e~~~A 356 (659)
+++||++||+||++||.+.|+.+|++|++++||+|||+||||+||++||.+|+.+.+.. .+... ....+...|
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999984321 11111 113567789
Q ss_pred HHHHhhcCCCccchhhhhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCC
Q 041667 357 TQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGT 436 (659)
Q Consensus 357 ~q~l~e~sP~~kFah~tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~ 436 (659)
|+.||++|||+||||||||||||||++ |+++||||||||++|.|||+|||+||.|++| ||+||||||+.|.
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~--------g~~~vHIID~~i~~G~QW~~LiqaLa~R~~g-pp~LrIT~i~~~~ 151 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFE--------GERRVHIIDFGIGFGVQWPSLIQALASRPGG-PPSLRITGIGPPN 151 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhc--------cCcceEEEeccCCcchHHHHHHHHHhcCCCC-CCeEEEEeccCCC
Confidence 999999999999999999999999998 7899999999999999999999999999987 5599999999975
Q ss_pred C-CHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH
Q 041667 437 A-SEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV 515 (659)
Q Consensus 437 ~-~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V 515 (659)
. ....+++||+||.+||+++||||||++|...++++++.++|++++||+|||||+|+||||.+++...++|||.||+.|
T Consensus 152 ~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i 231 (374)
T PF03514_consen 152 SGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI 231 (374)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH
Confidence 3 468899999999999999999999999766699999999999999999999999999999999988889999999999
Q ss_pred HccCCcEEEEEeccCCCCCCChHHHHHHHHHHHHHHHHHhhhccCCCchhHHHHHHH-HhHHHhhhhccccccccccccc
Q 041667 516 KGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEG-LSRKLANSVACEGRDRVERCEV 594 (659)
Q Consensus 516 rsL~PkVVtlVEqEan~Ns~~F~~RF~EAL~yYsAlFDSLdatl~rds~eR~~vE~~-lgreI~NiVAcEG~eRvER~E~ 594 (659)
|+|+|+|||+||+|+|||+++|++||.|||+||+|+|||||+++|+++.+|..+|+. ||++|+|||||||.+|+||||+
T Consensus 232 r~L~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~ 311 (374)
T PF03514_consen 232 RSLNPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHER 311 (374)
T ss_pred HhcCCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred cccHHHhhhhCCceecCCCHHHHHHHHHHhhCCCCCCCCcEEEeeCCEEEEeeCCceeEEEeecC
Q 041667 595 FGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR 659 (659)
Q Consensus 595 ~~kWr~Rm~~AGF~~vplS~~va~~vk~~L~~g~~~~~gf~V~ee~g~L~LgWkgrpLi~aSAWr 659 (659)
+++|+.||.+|||+++|+|+.++.+++.+|..+ .++||+|++++|||+|||||+||+++||||
T Consensus 312 ~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~--~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 312 LEQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKF--PGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred hhHHHHHHHhcCCeecCCCHHHHHHHHHHHhcc--CCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 999999999999999999999999999999853 368999999999999999999999999998
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.10 E-value=0.017 Score=59.32 Aligned_cols=191 Identities=17% Similarity=0.215 Sum_probs=98.7
Q ss_pred hhcCCCccchhhhhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHH
Q 041667 361 YDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEE 440 (659)
Q Consensus 361 ~e~sP~~kFah~tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~ 440 (659)
....|++..-|-.+.. +++.... ..-+|+|+|.|.|. +...|+.+-. .+..++|||+.. +.
T Consensus 33 ~~~~p~y~~~~~~~~~-~~~~~~~---------~~~~vLDlGcGtG~----~~~~l~~~~~--~~~~~v~gvD~S---~~ 93 (247)
T PRK15451 33 QRSVPGYSNIISMIGM-LAERFVQ---------PGTQVYDLGCSLGA----ATLSVRRNIH--HDNCKIIAIDNS---PA 93 (247)
T ss_pred HhcCCChHHHHHHHHH-HHHHhCC---------CCCEEEEEcccCCH----HHHHHHHhcC--CCCCeEEEEeCC---HH
Confidence 3457888877666553 3333321 23579999999886 3333444211 123799999975 35
Q ss_pred HHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccC
Q 041667 441 KLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLS 519 (659)
Q Consensus 441 ~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~ 519 (659)
.++.+.+++.+ .+++-.+..+.. .+.++.. ...++++ +.+.|||++++ .+..+|+.+ +.|+
T Consensus 94 ml~~A~~~~~~----~~~~~~v~~~~~-d~~~~~~-----~~~D~vv--~~~~l~~l~~~------~~~~~l~~i~~~Lk 155 (247)
T PRK15451 94 MIERCRRHIDA----YKAPTPVDVIEG-DIRDIAI-----ENASMVV--LNFTLQFLEPS------ERQALLDKIYQGLN 155 (247)
T ss_pred HHHHHHHHHHh----cCCCCCeEEEeC-ChhhCCC-----CCCCEEe--hhhHHHhCCHH------HHHHHHHHHHHhcC
Confidence 56666655543 333222223334 4444432 1223433 55678888643 245566665 7889
Q ss_pred CcEEE-EEeccCCCCCCChHHHHHHHHHHHHHHHHHhhhccCCCchhHHHHHHHHhHHHhhhhccccccccccccccccH
Q 041667 520 PSVVT-LVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKW 598 (659)
Q Consensus 520 PkVVt-lVEqEan~Ns~~F~~RF~EAL~yYsAlFDSLdatl~rds~eR~~vE~~lgreI~NiVAcEG~eRvER~E~~~kW 598 (659)
|.-.. ++|.-... .+.....+.+.+..|. ....+ + ...+++. ...+.| +-+.++....
T Consensus 156 pGG~l~l~e~~~~~-~~~~~~~~~~~~~~~~-----~~~g~---s--~~ei~~~-~~~~~~---------~~~~~~~~~~ 214 (247)
T PRK15451 156 PGGALVLSEKFSFE-DAKVGELLFNMHHDFK-----RANGY---S--ELEISQK-RSMLEN---------VMLTDSVETH 214 (247)
T ss_pred CCCEEEEEEecCCC-cchhHHHHHHHHHHHH-----HHcCC---C--HHHHHHH-HHHHHh---------hcccCCHHHH
Confidence 98554 55643322 2333333333332221 01111 1 1122221 111223 3334567789
Q ss_pred HHhhhhCCcee
Q 041667 599 RARMRMAGFEL 609 (659)
Q Consensus 599 r~Rm~~AGF~~ 609 (659)
..+|+.|||..
T Consensus 215 ~~~L~~aGF~~ 225 (247)
T PRK15451 215 KARLHKAGFEH 225 (247)
T ss_pred HHHHHHcCchh
Confidence 99999999975
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.27 E-value=0.15 Score=51.74 Aligned_cols=106 Identities=18% Similarity=0.311 Sum_probs=62.2
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDL 473 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL 473 (659)
+.-+|+|+|.|.|. ++..|+.+-. .|..++|||+.. +..++.+.+++.++.. +..++| +.. .+.++
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~--~p~~~v~gvD~s---~~ml~~a~~~~~~~~~--~~~v~~--~~~-d~~~~ 118 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN--QPNVKIIGIDNS---QPMVERCRQHIAAYHS--EIPVEI--LCN-DIRHV 118 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC--CCCCeEEEEeCC---HHHHHHHHHHHHhcCC--CCCeEE--EEC-ChhhC
Confidence 34579999999884 5566666522 124799999975 3556666666544321 223333 333 44444
Q ss_pred CccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEE
Q 041667 474 SRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLV 526 (659)
Q Consensus 474 ~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlV 526 (659)
.. .... +|-|.+.|||++++. +..+|+.+ +.|+|.-++++
T Consensus 119 ~~-----~~~d--~v~~~~~l~~~~~~~------~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 119 EI-----KNAS--MVILNFTLQFLPPED------RIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred CC-----CCCC--EEeeecchhhCCHHH------HHHHHHHHHHhcCCCeEEEE
Confidence 32 1223 344666789886431 34566665 67899987765
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.38 E-value=0.79 Score=45.89 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=54.5
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCc
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSR 475 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~ 475 (659)
-+|+|+|.|.|. +...|+.+- ++..+||||+.. +..++.+.+++. ..+++ ....+.. ..+++..
T Consensus 47 ~~vLDiGcG~G~----~~~~la~~~---~~~~~v~gvD~s---~~~~~~a~~~~~----~~~~~-~v~~~~~-d~~~~~~ 110 (231)
T TIGR02752 47 TSALDVCCGTAD----WSIALAEAV---GPEGHVIGLDFS---ENMLSVGRQKVK----DAGLH-NVELVHG-NAMELPF 110 (231)
T ss_pred CEEEEeCCCcCH----HHHHHHHHh---CCCCEEEEEECC---HHHHHHHHHHHH----hcCCC-ceEEEEe-chhcCCC
Confidence 579999999887 334555542 123589999975 244555544443 23432 2233333 3333321
Q ss_pred cccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHH-HHHccCCcEEEEE
Q 041667 476 DSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLR-RVKGLSPSVVTLV 526 (659)
Q Consensus 476 ~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~-~VrsL~PkVVtlV 526 (659)
. -..=+.|+ +.+.+||+++ + ..+|+ ..+.|+|.-.+++
T Consensus 111 ~---~~~fD~V~--~~~~l~~~~~-------~-~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 111 D---DNSFDYVT--IGFGLRNVPD-------Y-MQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred C---CCCccEEE--EecccccCCC-------H-HHHHHHHHHHcCcCeEEEE
Confidence 1 01113343 4456787754 2 34555 4578899866654
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=94.49 E-value=1.8 Score=45.09 Aligned_cols=121 Identities=18% Similarity=0.203 Sum_probs=66.4
Q ss_pred eeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCC
Q 041667 395 KIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLS 474 (659)
Q Consensus 395 ~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~ 474 (659)
.-+|+|+|.|.|. +...|+.+-+ | .-+||||+.. ++.++.+.++....++...-..+|. .. ..+++.
T Consensus 74 ~~~VLDlGcGtG~----~~~~la~~~~--~-~~~V~gvD~S---~~ml~~A~~r~~~~~~~~~~~i~~~--~~-d~~~lp 140 (261)
T PLN02233 74 GDRVLDLCCGSGD----LAFLLSEKVG--S-DGKVMGLDFS---SEQLAVAASRQELKAKSCYKNIEWI--EG-DATDLP 140 (261)
T ss_pred CCEEEEECCcCCH----HHHHHHHHhC--C-CCEEEEEECC---HHHHHHHHHHhhhhhhccCCCeEEE--Ec-ccccCC
Confidence 4579999999997 3445666532 2 2489999976 3556666555432222222233333 23 334432
Q ss_pred ccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEE-EEeccCCCCCCChHHHHH
Q 041667 475 RDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVT-LVEQETNTNTAPFMARVN 542 (659)
Q Consensus 475 ~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVt-lVEqEan~Ns~~F~~RF~ 542 (659)
..++..=+|-|.+.|||++| +...+-+..|-|+|.-.+ ++|-. .....|...+.
T Consensus 141 -----~~~~sfD~V~~~~~l~~~~d-------~~~~l~ei~rvLkpGG~l~i~d~~--~~~~~~~~~~~ 195 (261)
T PLN02233 141 -----FDDCYFDAITMGYGLRNVVD-------RLKAMQEMYRVLKPGSRVSILDFN--KSTQPFTTSMQ 195 (261)
T ss_pred -----CCCCCEeEEEEecccccCCC-------HHHHHHHHHHHcCcCcEEEEEECC--CCCcHHHHHHH
Confidence 23333435556778899864 333344445789998554 44433 22335555553
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=93.39 E-value=0.95 Score=46.73 Aligned_cols=171 Identities=20% Similarity=0.214 Sum_probs=64.6
Q ss_pred CceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCC
Q 041667 393 SNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDD 472 (659)
Q Consensus 393 ~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~led 472 (659)
.+..+|+|.+.|.|.- ...|+.+-+ | .-+||||+.. ++-|+...+++.+.... ..+| |.. ..++
T Consensus 46 ~~g~~vLDv~~GtG~~----~~~l~~~~~--~-~~~v~~vD~s---~~ML~~a~~k~~~~~~~---~i~~--v~~-da~~ 109 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDV----TRELARRVG--P-NGKVVGVDIS---PGMLEVARKKLKREGLQ---NIEF--VQG-DAED 109 (233)
T ss_dssp -S--EEEEET-TTSHH----HHHHGGGSS------EEEEEES----HHHHHHHHHHHHHTT-----SEEE--EE--BTTB
T ss_pred CCCCEEEEeCCChHHH----HHHHHHHCC--C-ccEEEEecCC---HHHHHHHHHHHHhhCCC---CeeE--EEc-CHHH
Confidence 3456999999999953 344455432 2 3599999975 36677777777654432 2233 233 3444
Q ss_pred CCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEE-EEeccCCCCCCChHHHHHHHHHHHHHH
Q 041667 473 LSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVT-LVEQETNTNTAPFMARVNEACAYYGAL 551 (659)
Q Consensus 473 L~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVt-lVEqEan~Ns~~F~~RF~EAL~yYsAl 551 (659)
+ .+.++..=+|-|.|.||+++| +...+=++.|-|+|.-.+ ++|-.--.+ .-+...+.+|...
T Consensus 110 l-----p~~d~sfD~v~~~fglrn~~d-------~~~~l~E~~RVLkPGG~l~ile~~~p~~-----~~~~~~~~~y~~~ 172 (233)
T PF01209_consen 110 L-----PFPDNSFDAVTCSFGLRNFPD-------RERALREMYRVLKPGGRLVILEFSKPRN-----PLLRALYKFYFKY 172 (233)
T ss_dssp -------S-TT-EEEEEEES-GGG-SS-------HHHHHHHHHHHEEEEEEEEEEEEEB-SS-----HHHHHHHHH----
T ss_pred h-----cCCCCceeEEEHHhhHHhhCC-------HHHHHHHHHHHcCCCeEEEEeeccCCCC-----chhhceeeeeecc
Confidence 4 345566778889999999876 234455556889998655 445322222 2333444455543
Q ss_pred HH-HhhhccCCCchhHHHHHHHHhHHHhhhhccccccccccccccccHHHhhhhCCceecCC
Q 041667 552 FD-SIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPM 612 (659)
Q Consensus 552 FD-SLdatl~rds~eR~~vE~~lgreI~NiVAcEG~eRvER~E~~~kWr~Rm~~AGF~~vpl 612 (659)
+- -+..-+..+.. .. +.|.+-|.+... .+.-.+.|+.+||+.+..
T Consensus 173 ilP~~g~l~~~~~~---~Y-~yL~~Si~~f~~------------~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 173 ILPLIGRLLSGDRE---AY-RYLPESIRRFPS------------PEELKELLEEAGFKNVEY 218 (233)
T ss_dssp --------------------------------------------------------------
T ss_pred cccccccccccccc---cc-cccccccccccc------------cccccccccccccccccc
Confidence 32 22222222211 11 245544443322 233456688999986644
No 7
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=93.27 E-value=1.8 Score=45.74 Aligned_cols=119 Identities=14% Similarity=0.175 Sum_probs=65.8
Q ss_pred HHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041667 375 NLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAE 454 (659)
Q Consensus 375 NqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAe 454 (659)
...|++.+.- .+.-+|+|+|-|.| .+..+++++- | .+++|+++.+ ..++.+.+ .++
T Consensus 138 ~~~l~~~~~~--------~~~~~vlDiG~G~G----~~~~~~~~~~---p-~~~~~~~D~~----~~~~~a~~----~~~ 193 (306)
T TIGR02716 138 IQLLLEEAKL--------DGVKKMIDVGGGIG----DISAAMLKHF---P-ELDSTILNLP----GAIDLVNE----NAA 193 (306)
T ss_pred HHHHHHHcCC--------CCCCEEEEeCCchh----HHHHHHHHHC---C-CCEEEEEecH----HHHHHHHH----HHH
Confidence 4567776641 23459999999988 3556666653 3 4799999863 34544443 445
Q ss_pred HcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEE-EEeccCC
Q 041667 455 RVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVT-LVEQETN 531 (659)
Q Consensus 455 slgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVt-lVEqEan 531 (659)
..|+.=.++.+.. +..+.. + ...++++ +...||+..++. ...+|+.+ +.|+|.-.+ ++|.-.+
T Consensus 194 ~~gl~~rv~~~~~-d~~~~~---~--~~~D~v~--~~~~lh~~~~~~------~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 194 EKGVADRMRGIAV-DIYKES---Y--PEADAVL--FCRILYSANEQL------STIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred hCCccceEEEEec-CccCCC---C--CCCCEEE--eEhhhhcCChHH------HHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 5565423333443 222111 1 1233333 334577765432 24567655 789996544 6665443
No 8
>PRK06202 hypothetical protein; Provisional
Probab=90.83 E-value=2.3 Score=42.91 Aligned_cols=105 Identities=23% Similarity=0.288 Sum_probs=54.8
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDL 473 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL 473 (659)
+...|+|+|.|.|. +...|...... .| | ..+||||+... ..++...++. +..++.+. .+.. +++
T Consensus 60 ~~~~iLDlGcG~G~-~~~~L~~~~~~-~g-~-~~~v~gvD~s~---~~l~~a~~~~----~~~~~~~~--~~~~---~~l 123 (232)
T PRK06202 60 RPLTLLDIGCGGGD-LAIDLARWARR-DG-L-RLEVTAIDPDP---RAVAFARANP----RRPGVTFR--QAVS---DEL 123 (232)
T ss_pred CCcEEEEeccCCCH-HHHHHHHHHHh-CC-C-CcEEEEEcCCH---HHHHHHHhcc----ccCCCeEE--EEec---ccc
Confidence 45689999999996 33332222222 23 2 37999999762 3344333322 12244433 3322 222
Q ss_pred CccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEE
Q 041667 474 SRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTL 525 (659)
Q Consensus 474 ~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtl 525 (659)
.. .++..=+|-|.+.|||++++. ...+|+.+..+.-.++++
T Consensus 124 ~~-----~~~~fD~V~~~~~lhh~~d~~------~~~~l~~~~r~~~~~~~i 164 (232)
T PRK06202 124 VA-----EGERFDVVTSNHFLHHLDDAE------VVRLLADSAALARRLVLH 164 (232)
T ss_pred cc-----cCCCccEEEECCeeecCChHH------HHHHHHHHHHhcCeeEEE
Confidence 11 223333444556789997642 346777776554445544
No 9
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=90.28 E-value=3.1 Score=39.12 Aligned_cols=105 Identities=21% Similarity=0.346 Sum_probs=61.8
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCce-eEEEEEecCCCCC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVC-LRFNVAICLKFDD 472 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVp-FEF~~V~~~~led 472 (659)
+..+|+|+|.|.|.- ...|+.+- + | ..+||||+-.. ..++ +..+.++.++++ ++|.. . ++++
T Consensus 3 ~~~~iLDlGcG~G~~----~~~l~~~~-~-~-~~~i~gvD~s~---~~i~----~a~~~~~~~~~~ni~~~~--~-d~~~ 65 (152)
T PF13847_consen 3 SNKKILDLGCGTGRL----LIQLAKEL-N-P-GAKIIGVDISE---EMIE----YAKKRAKELGLDNIEFIQ--G-DIED 65 (152)
T ss_dssp TTSEEEEET-TTSHH----HHHHHHHS-T-T-TSEEEEEESSH---HHHH----HHHHHHHHTTSTTEEEEE--S-BTTC
T ss_pred CCCEEEEecCcCcHH----HHHHHHhc-C-C-CCEEEEEECcH---HHHH----HhhcccccccccccceEE--e-ehhc
Confidence 468999999998854 34455321 1 1 25799999752 3343 334567778887 45544 4 5566
Q ss_pred CCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEEE
Q 041667 473 LSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLV 526 (659)
Q Consensus 473 L~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtlV 526 (659)
+... +. +..=+|.+...|||+.+ +...+-+..+.|+|..++++
T Consensus 66 l~~~-~~---~~~D~I~~~~~l~~~~~-------~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 66 LPQE-LE---EKFDIIISNGVLHHFPD-------PEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp GCGC-SS---TTEEEEEEESTGGGTSH-------HHHHHHHHHHHEEEEEEEEE
T ss_pred cccc-cC---CCeeEEEEcCchhhccC-------HHHHHHHHHHHcCCCcEEEE
Confidence 5533 33 33334555555687754 23344455688899877755
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=90.06 E-value=17 Score=37.39 Aligned_cols=96 Identities=26% Similarity=0.299 Sum_probs=55.8
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDL 473 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL 473 (659)
+.-+|+|+|.|.| .+...|+.+- | ..++|||+... ..++ .|+..++.| . .. ..+++
T Consensus 29 ~~~~vLDlGcG~G----~~~~~l~~~~---p-~~~v~gvD~s~---~~~~--------~a~~~~~~~--~--~~-d~~~~ 84 (255)
T PRK14103 29 RARRVVDLGCGPG----NLTRYLARRW---P-GAVIEALDSSP---EMVA--------AARERGVDA--R--TG-DVRDW 84 (255)
T ss_pred CCCEEEEEcCCCC----HHHHHHHHHC---C-CCEEEEEECCH---HHHH--------HHHhcCCcE--E--Ec-ChhhC
Confidence 3467899999988 3556777763 2 25899999752 3333 334445543 2 22 33443
Q ss_pred CccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHH-HHHccCCcEEEEEe
Q 041667 474 SRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLR-RVKGLSPSVVTLVE 527 (659)
Q Consensus 474 ~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~-~VrsL~PkVVtlVE 527 (659)
.. .+..=+|-|.+.|||++| + ..+|+ ..+.|+|.-.+++.
T Consensus 85 ~~------~~~fD~v~~~~~l~~~~d-------~-~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 85 KP------KPDTDVVVSNAALQWVPE-------H-ADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred CC------CCCceEEEEehhhhhCCC-------H-HHHHHHHHHhCCCCcEEEEE
Confidence 21 122334445566788865 2 34555 45789999777664
No 11
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=87.26 E-value=4.2 Score=42.91 Aligned_cols=143 Identities=22% Similarity=0.286 Sum_probs=76.2
Q ss_pred hhhhhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHH
Q 041667 370 GFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKL 449 (659)
Q Consensus 370 ah~tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL 449 (659)
+++++-..||+.++... .+..--+|+|||-|-|. .+.-+...-+ ...++|.|+.+ ..+.++|++|
T Consensus 13 ~~YA~~~~vl~El~~r~----p~f~P~~vLD~GsGpGt---a~wAa~~~~~----~~~~~~~vd~s----~~~~~l~~~l 77 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRL----PDFRPRSVLDFGSGPGT---ALWAAREVWP----SLKEYTCVDRS----PEMLELAKRL 77 (274)
T ss_pred HHHHHHHHHHHHHHHhC----cCCCCceEEEecCChHH---HHHHHHHHhc----CceeeeeecCC----HHHHHHHHHH
Confidence 34556666666665321 13445699999999886 2222222221 35789999875 3456677777
Q ss_pred HHHHHHcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEEec
Q 041667 450 SQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLVEQ 528 (659)
Q Consensus 450 ~~fAeslgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlVEq 528 (659)
.+-...... .+. ...+..+.+.+.+.+-|+ +.+.|-.|++ ..|..+++.+ ..+++ ++||||.
T Consensus 78 ~~~~~~~~~-~~~-------~~~~~~~~~~~~~~DLvi--~s~~L~EL~~------~~r~~lv~~LW~~~~~-~LVlVEp 140 (274)
T PF09243_consen 78 LRAGPNNRN-AEW-------RRVLYRDFLPFPPDDLVI--ASYVLNELPS------AARAELVRSLWNKTAP-VLVLVEP 140 (274)
T ss_pred Hhccccccc-chh-------hhhhhcccccCCCCcEEE--EehhhhcCCc------hHHHHHHHHHHHhccC-cEEEEcC
Confidence 553321110 001 111122222233333333 4455556654 2478888888 55666 8888887
Q ss_pred cCCCCCCChHHHHHHHH
Q 041667 529 ETNTNTAPFMARVNEAC 545 (659)
Q Consensus 529 Ean~Ns~~F~~RF~EAL 545 (659)
..-.+ ...+.+.++.|
T Consensus 141 Gt~~G-f~~i~~aR~~l 156 (274)
T PF09243_consen 141 GTPAG-FRRIAEARDQL 156 (274)
T ss_pred CChHH-HHHHHHHHHHH
Confidence 65433 44555555555
No 12
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=86.45 E-value=9.6 Score=40.13 Aligned_cols=96 Identities=21% Similarity=0.278 Sum_probs=54.8
Q ss_pred EEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCcc
Q 041667 397 HVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRD 476 (659)
Q Consensus 397 HIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~~ 476 (659)
+|+|+|.|.|. +...||.+ | .++|||+.+. ..++. +.+.|+..++.+++.... +.+..
T Consensus 123 ~vLDlGcG~G~----~~~~la~~--g----~~V~avD~s~---~ai~~----~~~~~~~~~l~v~~~~~D---~~~~~-- 180 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL--G----FDVTAVDINQ---QSLEN----LQEIAEKENLNIRTGLYD---INSAS-- 180 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC--C----CEEEEEECCH---HHHHH----HHHHHHHcCCceEEEEec---hhccc--
Confidence 89999999886 34456664 3 4899999752 33433 345566677766554332 22211
Q ss_pred ccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEE
Q 041667 477 SLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVT 524 (659)
Q Consensus 477 ~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVt 524 (659)
+. ..=+.++.+ +.|||+.++ .+..+|+.+ +.|+|.-+.
T Consensus 181 -~~-~~fD~I~~~--~vl~~l~~~------~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 181 -IQ-EEYDFILST--VVLMFLNRE------RIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred -cc-CCccEEEEc--chhhhCCHH------HHHHHHHHHHHhcCCCcEE
Confidence 11 111333333 456887543 244666665 678998763
No 13
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=86.43 E-value=11 Score=34.63 Aligned_cols=96 Identities=21% Similarity=0.301 Sum_probs=53.8
Q ss_pred CceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCC
Q 041667 393 SNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDD 472 (659)
Q Consensus 393 ~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~led 472 (659)
.+.-.|+|||.|.| . +...|+.+ | .++|||+... ..++. ..+.+. .... .
T Consensus 21 ~~~~~vLDiGcG~G-~---~~~~l~~~--~----~~~~g~D~~~---~~~~~-----------~~~~~~--~~~~-~--- 70 (161)
T PF13489_consen 21 KPGKRVLDIGCGTG-S---FLRALAKR--G----FEVTGVDISP---QMIEK-----------RNVVFD--NFDA-Q--- 70 (161)
T ss_dssp TTTSEEEEESSTTS-H---HHHHHHHT--T----SEEEEEESSH---HHHHH-----------TTSEEE--EEEC-H---
T ss_pred CCCCEEEEEcCCCC-H---HHHHHHHh--C----CEEEEEECCH---HHHhh-----------hhhhhh--hhhh-h---
Confidence 35668999999999 3 45555554 3 2999999752 22222 122211 1111 0
Q ss_pred CCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEE-eccC
Q 041667 473 LSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLV-EQET 530 (659)
Q Consensus 473 L~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlV-EqEa 530 (659)
.....++-.=+|-|...|||++| + ..+|+.| +.|+|.-++++ +...
T Consensus 71 ----~~~~~~~~fD~i~~~~~l~~~~d-------~-~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 71 ----DPPFPDGSFDLIICNDVLEHLPD-------P-EEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ----THHCHSSSEEEEEEESSGGGSSH-------H-HHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ----hhhccccchhhHhhHHHHhhccc-------H-HHHHHHHHHhcCCCCEEEEEEcCC
Confidence 01112334445666688999974 3 3566655 66799766644 4443
No 14
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=86.37 E-value=9.4 Score=41.40 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=59.9
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHH-Hc-CceeEEEEEecCCCC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAE-RV-GVCLRFNVAICLKFD 471 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAe-sl-gVpFEF~~V~~~~le 471 (659)
+...|+|+|.|.|. +...|+.+ | .+||||+-. ...++...++..+.-. .. +...+|... .++
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~--g----~~V~gvD~S---~~ml~~A~~~~~~~~~~~~~~~~~~f~~~---Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE--G----AIVSASDIS---AAMVAEAERRAKEALAALPPEVLPKFEAN---DLE 207 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC--C----CEEEEEECC---HHHHHHHHHHHHhcccccccccceEEEEc---chh
Confidence 34689999999886 45566654 3 489999975 3556655555432110 00 233455432 333
Q ss_pred CCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEEE
Q 041667 472 DLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLV 526 (659)
Q Consensus 472 dL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtlV 526 (659)
++.. .+ + +|-|...|||++++. ...+++.++.+.|..+++.
T Consensus 208 ~l~~-~f-----D--~Vv~~~vL~H~p~~~------~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 208 SLSG-KY-----D--TVTCLDVLIHYPQDK------ADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hcCC-Cc-----C--EEEEcCEEEecCHHH------HHHHHHHHHhhcCCEEEEE
Confidence 3321 11 2 333566678887642 3568888888888877664
No 15
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=86.09 E-value=35 Score=33.27 Aligned_cols=105 Identities=27% Similarity=0.308 Sum_probs=56.2
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDL 473 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL 473 (659)
+...|+|+|.|.|. +...++.+- |...++++|+.. +..++.+.+++. ..-..+|.. . .+.++
T Consensus 39 ~~~~vldiG~G~G~----~~~~~~~~~---~~~~~~~~iD~~---~~~~~~~~~~~~-----~~~~i~~~~--~-d~~~~ 100 (223)
T TIGR01934 39 KGQKVLDVACGTGD----LAIELAKSA---PDRGKVTGVDFS---SEMLEVAKKKSE-----LPLNIEFIQ--A-DAEAL 100 (223)
T ss_pred CCCeEEEeCCCCCh----hHHHHHHhc---CCCceEEEEECC---HHHHHHHHHHhc-----cCCCceEEe--c-chhcC
Confidence 45789999998885 344445442 223689999975 244444444432 222233433 2 33333
Q ss_pred CccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHH-HHccCCcEEE-EEecc
Q 041667 474 SRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRR-VKGLSPSVVT-LVEQE 529 (659)
Q Consensus 474 ~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~-VrsL~PkVVt-lVEqE 529 (659)
. ..++..=+|-+.+.+|++.+ + +.+|+. .+.|+|.-.+ ++|..
T Consensus 101 ~-----~~~~~~D~i~~~~~~~~~~~-------~-~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 101 P-----FEDNSFDAVTIAFGLRNVTD-------I-QKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred C-----CCCCcEEEEEEeeeeCCccc-------H-HHHHHHHHHHcCCCcEEEEEEec
Confidence 2 12233334445666787653 2 345554 4667888666 44544
No 16
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=85.54 E-value=8.6 Score=40.94 Aligned_cols=113 Identities=14% Similarity=0.126 Sum_probs=69.1
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCC-C
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDL-S 474 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL-~ 474 (659)
..|||+|.|.|.-=..|+++|.. ..++|+|+-+ .+.|+.+.++|.+- .-++. +..+.. ...+. .
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~-------~~~~~~iDiS---~~mL~~a~~~l~~~--~p~~~--v~~i~g-D~~~~~~ 129 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ-------PARYVPIDIS---ADALKESAAALAAD--YPQLE--VHGICA-DFTQPLA 129 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc-------CCeEEEEECC---HHHHHHHHHHHHhh--CCCce--EEEEEE-cccchhh
Confidence 57999999999766677777643 2689999976 36677777777541 12343 444444 33331 1
Q ss_pred ccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEEeccC
Q 041667 475 RDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLVEQET 530 (659)
Q Consensus 475 ~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlVEqEa 530 (659)
... ....+..+++.+...++++..+. ...||+.+ +.|+|.-..++.-+.
T Consensus 130 ~~~-~~~~~~~~~~~~gs~~~~~~~~e------~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 130 LPP-EPAAGRRLGFFPGSTIGNFTPEE------AVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred hhc-ccccCCeEEEEecccccCCCHHH------HHHHHHHHHHhcCCCCEEEEeccC
Confidence 100 01123567777777788875432 34688887 578998766654433
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=84.54 E-value=17 Score=39.57 Aligned_cols=100 Identities=21% Similarity=0.206 Sum_probs=58.0
Q ss_pred eeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCc--eeEEEEEecCCCCC
Q 041667 395 KIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGV--CLRFNVAICLKFDD 472 (659)
Q Consensus 395 ~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgV--pFEF~~V~~~~led 472 (659)
.-.|+|+|.|.|. +...|+.+ | .++|||+... ..++...++ ++..++ ..+|.. . +.++
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~--g----~~V~GID~s~---~~i~~Ar~~----~~~~~~~~~i~~~~--~-dae~ 191 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM--G----ATVTGVDAVD---KNVKIARLH----ADMDPVTSTIEYLC--T-TAEK 191 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc--C----CEEEEEeCCH---HHHHHHHHH----HHhcCcccceeEEe--c-CHHH
Confidence 3579999999887 45577653 2 3899999752 334433322 222222 333433 2 3444
Q ss_pred CCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEEe
Q 041667 473 LSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLVE 527 (659)
Q Consensus 473 L~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlVE 527 (659)
+.. ..+..=+|-|...|||++|. +.||+.+ +-|+|.-.+++.
T Consensus 192 l~~-----~~~~FD~Vi~~~vLeHv~d~--------~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 192 LAD-----EGRKFDAVLSLEVIEHVANP--------AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred hhh-----ccCCCCEEEEhhHHHhcCCH--------HHHHHHHHHHcCCCcEEEEE
Confidence 431 12223355566789999762 3577776 567999888763
No 18
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=84.30 E-value=13 Score=36.79 Aligned_cols=112 Identities=18% Similarity=0.185 Sum_probs=63.5
Q ss_pred hhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041667 373 AANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQV 452 (659)
Q Consensus 373 tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~f 452 (659)
++...|++++.. .+.-+|+|+|.|.|.-- ..||.+ | .++|||+... ..++.+. +.
T Consensus 17 ~~~~~l~~~~~~--------~~~~~vLDiGcG~G~~a----~~la~~--g----~~V~~iD~s~---~~l~~a~----~~ 71 (195)
T TIGR00477 17 TTHSAVREAVKT--------VAPCKTLDLGCGQGRNS----LYLSLA--G----YDVRAWDHNP---ASIASVL----DM 71 (195)
T ss_pred CchHHHHHHhcc--------CCCCcEEEeCCCCCHHH----HHHHHC--C----CeEEEEECCH---HHHHHHH----HH
Confidence 566788888863 23358999999988643 344544 3 3799998752 3344333 34
Q ss_pred HHHcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEE
Q 041667 453 AERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVT 524 (659)
Q Consensus 453 AeslgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVt 524 (659)
++..|+++.+..... .... +. ..=+.++ |.+.+||+..+ .+..+++.+ +.|+|.-+.
T Consensus 72 ~~~~~~~v~~~~~d~---~~~~---~~-~~fD~I~--~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l 129 (195)
T TIGR00477 72 KARENLPLRTDAYDI---NAAA---LN-EDYDFIF--STVVFMFLQAG------RVPEIIANMQAHTRPGGYN 129 (195)
T ss_pred HHHhCCCceeEeccc---hhcc---cc-CCCCEEE--EecccccCCHH------HHHHHHHHHHHHhCCCcEE
Confidence 555677654443322 2111 11 1113333 33456777532 245677765 678999753
No 19
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=83.45 E-value=2.9 Score=43.85 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=35.5
Q ss_pred CceeEEEecccCCCcchHHHHHHHHhCCC-CCCCeEEEEEecCCCCCHHHHHHHHH
Q 041667 393 SNKIHVIDFDIGQGGQYMNLFHALSARLN-GKPAIVKVTAVADGTASEEKLKAVRD 447 (659)
Q Consensus 393 ~~~VHIIDfdI~~G~QWpsLIqaLA~R~~-G~Pp~LRITgI~~~~~~~~~L~~tG~ 447 (659)
.+.++|.|.|.+.|--.-+|--.|++.-. ......+|+|++-+. ..|+.+.+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~---~~L~~Ar~ 150 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL---KALEKARA 150 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH---HHHHHHHc
Confidence 35699999999999987777666665421 112358999999762 45655544
No 20
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=83.29 E-value=50 Score=32.62 Aligned_cols=105 Identities=24% Similarity=0.277 Sum_probs=53.5
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDL 473 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL 473 (659)
+..+|+|+|.|.|. +...++.+- |+..++|+++... ..++.+.+++... .+.....|.. . .+.++
T Consensus 51 ~~~~vldiG~G~G~----~~~~l~~~~---~~~~~v~~~D~s~---~~~~~a~~~~~~~--~~~~~~~~~~--~-d~~~~ 115 (239)
T PRK00216 51 PGDKVLDLACGTGD----LAIALAKAV---GKTGEVVGLDFSE---GMLAVGREKLRDL--GLSGNVEFVQ--G-DAEAL 115 (239)
T ss_pred CCCeEEEeCCCCCH----HHHHHHHHc---CCCCeEEEEeCCH---HHHHHHHHhhccc--ccccCeEEEe--c-ccccC
Confidence 34689999999885 333444432 2357999999752 3344444433211 0222344433 2 33332
Q ss_pred CccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEE
Q 041667 474 SRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLV 526 (659)
Q Consensus 474 ~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlV 526 (659)
.. .-..-+. |-+.+.||++++ .+.+|+.+ +.|+|.-++++
T Consensus 116 ~~---~~~~~D~--I~~~~~l~~~~~--------~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 116 PF---PDNSFDA--VTIAFGLRNVPD--------IDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred CC---CCCCccE--EEEecccccCCC--------HHHHHHHHHHhccCCcEEEE
Confidence 21 1111123 334556777653 23556554 67888876644
No 21
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=82.38 E-value=4.7 Score=44.01 Aligned_cols=116 Identities=21% Similarity=0.267 Sum_probs=64.8
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHH---cCceeEEEEEe--cC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAER---VGVCLRFNVAI--CL 468 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAes---lgVpFEF~~V~--~~ 468 (659)
...+|+|++.|.|.=- .+=... .+ =++.||+-. ...++++.+|..+.-+. ....+.|.+.. .+
T Consensus 62 ~~~~VLDl~CGkGGDL---~Kw~~~----~i--~~~vg~Dis---~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D 129 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDL---QKWQKA----KI--KHYVGIDIS---EESIEEARERYKQLKKRNNSKQYRFDFIAEFIAAD 129 (331)
T ss_dssp TT-EEEEET-TTTTTH---HHHHHT----T---SEEEEEES----HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEEST
T ss_pred CCCeEEEecCCCchhH---HHHHhc----CC--CEEEEEeCC---HHHHHHHHHHHHHhccccccccccccchhheeccc
Confidence 5789999999988721 111111 13 367888865 47789999988665543 22334444332 21
Q ss_pred CCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEE
Q 041667 469 KFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTL 525 (659)
Q Consensus 469 ~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtl 525 (659)
...+-..+.+....+..=+|.|+|+||++=. ++.....||+.| +.|+|.-+.+
T Consensus 130 ~f~~~l~~~~~~~~~~FDvVScQFalHY~Fe----se~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 130 CFSESLREKLPPRSRKFDVVSCQFALHYAFE----SEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp TCCSHHHCTSSSTTS-EEEEEEES-GGGGGS----SHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cccchhhhhccccCCCcceeehHHHHHHhcC----CHHHHHHHHHHHHHhcCCCCEEE
Confidence 2221112223323357779999999999743 233345577776 6789986654
No 22
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=81.81 E-value=2.9 Score=36.52 Aligned_cols=105 Identities=22% Similarity=0.273 Sum_probs=58.3
Q ss_pred EEEecccCCCcchHHHHHHHHh-CCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCc
Q 041667 397 HVIDFDIGQGGQYMNLFHALSA-RLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSR 475 (659)
Q Consensus 397 HIIDfdI~~G~QWpsLIqaLA~-R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~ 475 (659)
+|+|+|.|.|. +...|+. +++ .|||||+.. +..++...+++.+.+..-+| +|. .. .+ ....
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~~~~-----~~v~gvD~s---~~~~~~a~~~~~~~~~~~~i--~~~--~~-d~-~~~~ 65 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARLFPG-----ARVVGVDIS---PEMLEIARERAAEEGLSDRI--TFV--QG-DA-EFDP 65 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHHHTT-----SEEEEEESS---HHHHHHHHHHHHHTTTTTTE--EEE--ES-CC-HGGT
T ss_pred EEEEEcCcCCH----HHHHHHhcCCC-----CEEEEEeCC---HHHHHHHHHHHHhcCCCCCe--EEE--EC-cc-ccCc
Confidence 57999999884 4444444 332 689999975 35677776666343332333 333 22 33 1111
Q ss_pred cccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEEe
Q 041667 476 DSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLVE 527 (659)
Q Consensus 476 ~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlVE 527 (659)
+ ...+=+.++.+. +.+|++.+. ..+..+|+.+ +.|+|.-+++++
T Consensus 66 ~--~~~~~D~v~~~~-~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 66 D--FLEPFDLVICSG-FTLHFLLPL-----DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp T--TSSCEEEEEECS-GSGGGCCHH-----HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c--cCCCCCEEEECC-Cccccccch-----hHHHHHHHHHHHhcCCCcEEEEE
Confidence 0 011223555555 556655432 1245677766 688999888774
No 23
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=81.79 E-value=39 Score=33.85 Aligned_cols=120 Identities=21% Similarity=0.284 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHH
Q 041667 372 MAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQ 451 (659)
Q Consensus 372 ~tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~ 451 (659)
..+|...++-+.... +..+..+|+|+|.|.|. +...|+.+ | .++|+|+.+. ..++.+.+++
T Consensus 30 ~~~~~~~~~~l~~~~----~~~~~~~vLdiG~G~G~----~~~~l~~~--~----~~v~~iD~s~---~~~~~a~~~~-- 90 (233)
T PRK05134 30 HRINPLRLNYIREHA----GGLFGKRVLDVGCGGGI----LSESMARL--G----ADVTGIDASE---ENIEVARLHA-- 90 (233)
T ss_pred HHhhHHHHHHHHHhc----cCCCCCeEEEeCCCCCH----HHHHHHHc--C----CeEEEEcCCH---HHHHHHHHHH--
Confidence 345555555444321 12345689999999875 33455543 2 3699998752 3344444333
Q ss_pred HHHHcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEEe
Q 041667 452 VAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLVE 527 (659)
Q Consensus 452 fAeslgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlVE 527 (659)
...++..+|... .+.++... ..+-.=+|-|...++|+++ + ..+|+.+ +.|+|.-.+++.
T Consensus 91 --~~~~~~~~~~~~---~~~~~~~~----~~~~fD~Ii~~~~l~~~~~-------~-~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 91 --LESGLKIDYRQT---TAEELAAE----HPGQFDVVTCMEMLEHVPD-------P-ASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred --HHcCCceEEEec---CHHHhhhh----cCCCccEEEEhhHhhccCC-------H-HHHHHHHHHHcCCCcEEEEE
Confidence 234454555432 23333210 1122223344555777653 2 3455554 677898666553
No 24
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=81.45 E-value=23 Score=36.92 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=62.7
Q ss_pred cchhhhhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHH
Q 041667 368 SLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRD 447 (659)
Q Consensus 368 kFah~tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~ 447 (659)
.-+=+.+-..+++.+.- .+.-+|+|+|.|.|.- ...|+.+. | .++|+|+.. +..++...+
T Consensus 34 ~~gg~~~~~~~l~~l~l--------~~~~~VLDiGcG~G~~----a~~la~~~-~----~~v~giD~s---~~~~~~a~~ 93 (263)
T PTZ00098 34 SSGGIEATTKILSDIEL--------NENSKVLDIGSGLGGG----CKYINEKY-G----AHVHGVDIC---EKMVNIAKL 93 (263)
T ss_pred CCCchHHHHHHHHhCCC--------CCCCEEEEEcCCCChh----hHHHHhhc-C----CEEEEEECC---HHHHHHHHH
Confidence 33334556667776641 3456899999998873 23445433 2 489999975 234444444
Q ss_pred HHHHHHHHcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEE
Q 041667 448 KLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLV 526 (659)
Q Consensus 448 rL~~fAeslgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlV 526 (659)
+... .-.++|... .+.+. ...++..=+|-+...++|++.+ .+..+|+.+ +.|+|.-.+++
T Consensus 94 ~~~~-----~~~i~~~~~---D~~~~-----~~~~~~FD~V~s~~~l~h~~~~------d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 94 RNSD-----KNKIEFEAN---DILKK-----DFPENTFDMIYSRDAILHLSYA------DKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred HcCc-----CCceEEEEC---CcccC-----CCCCCCeEEEEEhhhHHhCCHH------HHHHHHHHHHHHcCCCcEEEE
Confidence 3321 112333322 22221 1122222223344556777532 135667665 77899977755
No 25
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=80.50 E-value=25 Score=35.00 Aligned_cols=113 Identities=17% Similarity=0.212 Sum_probs=61.9
Q ss_pred hhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041667 373 AANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQV 452 (659)
Q Consensus 373 tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~f 452 (659)
.+...+++.+.. .+.-.|+|+|.|.|. +...||.+ | .+||||+.. +..++.+.+ .
T Consensus 17 ~~~~~l~~~l~~--------~~~~~vLDiGcG~G~----~a~~La~~--g----~~V~gvD~S---~~~i~~a~~----~ 71 (197)
T PRK11207 17 RTHSEVLEAVKV--------VKPGKTLDLGCGNGR----NSLYLAAN--G----FDVTAWDKN---PMSIANLER----I 71 (197)
T ss_pred CChHHHHHhccc--------CCCCcEEEECCCCCH----HHHHHHHC--C----CEEEEEeCC---HHHHHHHHH----H
Confidence 456677777752 234579999999887 33446665 3 389999875 233444333 2
Q ss_pred HHHcCce-eEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEE
Q 041667 453 AERVGVC-LRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTL 525 (659)
Q Consensus 453 AeslgVp-FEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtl 525 (659)
++..++. .++.. . .+.++. +. ..=+.|+. .+.+|+++++ .+..+++.+ +.|+|.-+++
T Consensus 72 ~~~~~~~~v~~~~--~-d~~~~~---~~-~~fD~I~~--~~~~~~~~~~------~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 72 KAAENLDNLHTAV--V-DLNNLT---FD-GEYDFILS--TVVLMFLEAK------TIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred HHHcCCCcceEEe--c-ChhhCC---cC-CCcCEEEE--ecchhhCCHH------HHHHHHHHHHHHcCCCcEEE
Confidence 3344553 33332 2 333332 11 11234443 3456777532 245666665 7789998643
No 26
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=79.48 E-value=20 Score=40.34 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=54.2
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCc
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSR 475 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~ 475 (659)
-+|+|+|.|.|. +...|+.+ + -+||||+... ..++... .+ .. ..-..+|. .. .+.+.
T Consensus 39 ~~vLDlGcG~G~----~~~~la~~--~----~~v~giD~s~---~~l~~a~-~~---~~-~~~~i~~~--~~-d~~~~-- 95 (475)
T PLN02336 39 KSVLELGAGIGR----FTGELAKK--A----GQVIALDFIE---SVIKKNE-SI---NG-HYKNVKFM--CA-DVTSP-- 95 (475)
T ss_pred CEEEEeCCCcCH----HHHHHHhh--C----CEEEEEeCCH---HHHHHHH-HH---hc-cCCceEEE--Ee-ccccc--
Confidence 489999999994 44456654 2 1789998642 3343221 11 11 11123332 22 22211
Q ss_pred cccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEE
Q 041667 476 DSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLV 526 (659)
Q Consensus 476 ~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlV 526 (659)
.+.+..+..=+|-|.+.|||++++. +..+|+.+ +.|+|..++++
T Consensus 96 -~~~~~~~~fD~I~~~~~l~~l~~~~------~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 96 -DLNISDGSVDLIFSNWLLMYLSDKE------VENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred -ccCCCCCCEEEEehhhhHHhCCHHH------HHHHHHHHHHhcCCCeEEEE
Confidence 1222333333555667799997642 34677665 55899987765
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=79.09 E-value=15 Score=37.82 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=59.4
Q ss_pred eeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCC
Q 041667 395 KIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLS 474 (659)
Q Consensus 395 ~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~ 474 (659)
.-+|+|+|.|.|. +...|+.+ | .++|+|+.. +..++.+.++ ++..|+.-....+.. .+.++.
T Consensus 45 ~~~vLDiGcG~G~----~a~~la~~--g----~~v~~vD~s---~~~l~~a~~~----~~~~g~~~~v~~~~~-d~~~l~ 106 (255)
T PRK11036 45 PLRVLDAGGGEGQ----TAIKLAEL--G----HQVILCDLS---AEMIQRAKQA----AEAKGVSDNMQFIHC-AAQDIA 106 (255)
T ss_pred CCEEEEeCCCchH----HHHHHHHc--C----CEEEEEECC---HHHHHHHHHH----HHhcCCccceEEEEc-CHHHHh
Confidence 4599999999983 55666765 3 379999865 2445544443 344555433344444 444443
Q ss_pred ccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEEE
Q 041667 475 RDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLV 526 (659)
Q Consensus 475 ~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtlV 526 (659)
.. .++..=+|-|...|||+.+ |...+-...+-|+|.-++++
T Consensus 107 ~~----~~~~fD~V~~~~vl~~~~~-------~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 107 QH----LETPVDLILFHAVLEWVAD-------PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred hh----cCCCCCEEEehhHHHhhCC-------HHHHHHHHHHHcCCCeEEEE
Confidence 11 1222223345667888753 33344444578899988755
No 28
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=78.31 E-value=94 Score=32.70 Aligned_cols=155 Identities=22% Similarity=0.275 Sum_probs=90.5
Q ss_pred cCCCccchh-hhhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHH
Q 041667 363 FSPCFSLGF-MAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEK 441 (659)
Q Consensus 363 ~sP~~kFah-~tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~ 441 (659)
....+.|+. .+=.++..+.+.. + +--+|+|.+.|.|- +.-.|+++- | .-+|||++-+ ..-
T Consensus 27 ~n~~~S~g~~~~Wr~~~i~~~~~-------~-~g~~vLDva~GTGd----~a~~~~k~~-g---~g~v~~~D~s---~~M 87 (238)
T COG2226 27 MNDLMSFGLHRLWRRALISLLGI-------K-PGDKVLDVACGTGD----MALLLAKSV-G---TGEVVGLDIS---ESM 87 (238)
T ss_pred hcccccCcchHHHHHHHHHhhCC-------C-CCCEEEEecCCccH----HHHHHHHhc-C---CceEEEEECC---HHH
Confidence 456777775 4566666666641 2 56899999998874 233344432 2 4699999976 355
Q ss_pred HHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCC
Q 041667 442 LKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSP 520 (659)
Q Consensus 442 L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~P 520 (659)
|+...+|+.+ .|+.- +.-|.. ..++|. ..++-.=+|-|.|.||+++| .+..|+-+ |=|+|
T Consensus 88 L~~a~~k~~~----~~~~~-i~fv~~-dAe~LP-----f~D~sFD~vt~~fglrnv~d--------~~~aL~E~~RVlKp 148 (238)
T COG2226 88 LEVAREKLKK----KGVQN-VEFVVG-DAENLP-----FPDNSFDAVTISFGLRNVTD--------IDKALKEMYRVLKP 148 (238)
T ss_pred HHHHHHHhhc----cCccc-eEEEEe-chhhCC-----CCCCccCEEEeeehhhcCCC--------HHHHHHHHHHhhcC
Confidence 6666665543 33332 343444 445444 34444558889999999876 34556554 77899
Q ss_pred cEEEEEeccCCCCCCChHHHHHHHHH-HHHH-HHHHhhhcc
Q 041667 521 SVVTLVEQETNTNTAPFMARVNEACA-YYGA-LFDSIESTV 559 (659)
Q Consensus 521 kVVtlVEqEan~Ns~~F~~RF~EAL~-yYsA-lFDSLdatl 559 (659)
...++|=.=.....+ -|..+++ ||.. ++=.+....
T Consensus 149 gG~~~vle~~~p~~~----~~~~~~~~~~~~~v~P~~g~~~ 185 (238)
T COG2226 149 GGRLLVLEFSKPDNP----VLRKAYILYYFKYVLPLIGKLV 185 (238)
T ss_pred CeEEEEEEcCCCCch----hhHHHHHHHHHHhHhhhhceee
Confidence 997766222222323 2334444 4444 555554443
No 29
>PLN02244 tocopherol O-methyltransferase
Probab=78.05 E-value=21 Score=38.67 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=56.5
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCce--eEEEEEecCCCCCC
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVC--LRFNVAICLKFDDL 473 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVp--FEF~~V~~~~ledL 473 (659)
-+|+|+|.|.|. +...|+.+- | .++|||+... ..++.. .+.++..|+. .+|.. . ...++
T Consensus 120 ~~VLDiGCG~G~----~~~~La~~~-g----~~v~gvD~s~---~~i~~a----~~~~~~~g~~~~v~~~~--~-D~~~~ 180 (340)
T PLN02244 120 KRIVDVGCGIGG----SSRYLARKY-G----ANVKGITLSP---VQAARA----NALAAAQGLSDKVSFQV--A-DALNQ 180 (340)
T ss_pred CeEEEecCCCCH----HHHHHHHhc-C----CEEEEEECCH---HHHHHH----HHHHHhcCCCCceEEEE--c-CcccC
Confidence 479999998885 555677654 2 4899999652 233322 3334455553 45543 2 23332
Q ss_pred CccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHH-HHHccCCcEEEEE
Q 041667 474 SRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLR-RVKGLSPSVVTLV 526 (659)
Q Consensus 474 ~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~-~VrsL~PkVVtlV 526 (659)
. ..++..=+|-|...+||++|. ..+|+ ..|-|+|.-.+++
T Consensus 181 ~-----~~~~~FD~V~s~~~~~h~~d~--------~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 181 P-----FEDGQFDLVWSMESGEHMPDK--------RKFVQELARVAAPGGRIII 221 (340)
T ss_pred C-----CCCCCccEEEECCchhccCCH--------HHHHHHHHHHcCCCcEEEE
Confidence 2 223333355566778998752 34554 4578899755433
No 30
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=77.85 E-value=6.5 Score=41.36 Aligned_cols=100 Identities=23% Similarity=0.330 Sum_probs=69.8
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDL 473 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL 473 (659)
...-|+|+|.|.| .|-+.||.. | .++|||+-.. ..++.. ...|.+-|+..+|.... +|||
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~--G----a~VtgiD~se---~~I~~A----k~ha~e~gv~i~y~~~~---~edl 118 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARL--G----ASVTGIDASE---KPIEVA----KLHALESGVNIDYRQAT---VEDL 118 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHC--C----CeeEEecCCh---HHHHHH----HHhhhhccccccchhhh---HHHH
Confidence 4577999999988 788888875 4 6899999753 223333 23567778888887764 4566
Q ss_pred CccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHH-HHccCCcEEEEE
Q 041667 474 SRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRR-VKGLSPSVVTLV 526 (659)
Q Consensus 474 ~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~-VrsL~PkVVtlV 526 (659)
.... +-.=||-|+=-|+|++|. . .|++. .+-++|.-++++
T Consensus 119 ~~~~-----~~FDvV~cmEVlEHv~dp-------~-~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 119 ASAG-----GQFDVVTCMEVLEHVPDP-------E-SFLRACAKLVKPGGILFL 159 (243)
T ss_pred HhcC-----CCccEEEEhhHHHccCCH-------H-HHHHHHHHHcCCCcEEEE
Confidence 5431 334478899999999874 2 46665 567799988776
No 31
>PRK08317 hypothetical protein; Provisional
Probab=77.66 E-value=74 Score=31.13 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=54.1
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDL 473 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL 473 (659)
+.-+|+|+|.|.|. +...++.+- | | .-++++|+... ..++.+.++ ....+...+|.. . .++++
T Consensus 19 ~~~~vLdiG~G~G~----~~~~~a~~~-~-~-~~~v~~~d~~~---~~~~~a~~~----~~~~~~~~~~~~--~-d~~~~ 81 (241)
T PRK08317 19 PGDRVLDVGCGPGN----DARELARRV-G-P-EGRVVGIDRSE---AMLALAKER----AAGLGPNVEFVR--G-DADGL 81 (241)
T ss_pred CCCEEEEeCCCCCH----HHHHHHHhc-C-C-CcEEEEEeCCH---HHHHHHHHH----hhCCCCceEEEe--c-ccccC
Confidence 34579999998874 333444442 2 2 35899999752 334433333 111222333433 2 22222
Q ss_pred CccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEE-Eecc
Q 041667 474 SRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTL-VEQE 529 (659)
Q Consensus 474 ~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtl-VEqE 529 (659)
. ...+..=+|-+...++|+++ +...+=+..+.|+|.-.++ +|.+
T Consensus 82 ~-----~~~~~~D~v~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 82 P-----FPDGSFDAVRSDRVLQHLED-------PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred C-----CCCCCceEEEEechhhccCC-------HHHHHHHHHHHhcCCcEEEEEecC
Confidence 2 12222333445566788754 2333444457789997664 4433
No 32
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=77.40 E-value=5.1 Score=34.98 Aligned_cols=97 Identities=26% Similarity=0.374 Sum_probs=53.2
Q ss_pred EEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCccc
Q 041667 398 VIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDS 477 (659)
Q Consensus 398 IIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~~~ 477 (659)
|+|+|.|.|.--..|.+.+ . .| | ..++|+|+-. +..++.+.++..+ .+++.+| +.. .+.++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~--~~-~-~~~~~gvD~s---~~~l~~~~~~~~~----~~~~~~~--~~~-D~~~l~--- 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-D--AG-P-SSRVIGVDIS---PEMLELAKKRFSE----DGPKVRF--VQA-DARDLP--- 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS----------SEEEEEES----HHHHHHHHHHSHH----TTTTSEE--EES-CTTCHH---
T ss_pred CEEeecCCcHHHHHHHHHh-h--hc-c-cceEEEEECC---HHHHHHHHHhchh----cCCceEE--EEC-CHhHCc---
Confidence 7999999998777777776 2 23 2 3799999975 3555555444333 4566666 333 444443
Q ss_pred cCCCCCceEEEee-ecccccCCCCCCCCCChHHHHHHHHH-ccCC
Q 041667 478 LGCEPDETLAVNF-AFKLFRMPDESVSTENPRDELLRRVK-GLSP 520 (659)
Q Consensus 478 L~i~~gEaLaVN~-~f~Lh~L~desvs~~npRd~fL~~Vr-sL~P 520 (659)
...+..=+|-| ...+||+.++. +..+|+.+. -|+|
T Consensus 63 --~~~~~~D~v~~~~~~~~~~~~~~------~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 63 --FSDGKFDLVVCSGLSLHHLSPEE------LEALLRRIARLLRP 99 (101)
T ss_dssp --HHSSSEEEEEE-TTGGGGSSHHH------HHHHHHHHHHTEEE
T ss_pred --ccCCCeeEEEEcCCccCCCCHHH------HHHHHHHHHHHhCC
Confidence 12233334444 45588876532 456776654 3344
No 33
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=74.83 E-value=26 Score=35.82 Aligned_cols=111 Identities=21% Similarity=0.222 Sum_probs=60.4
Q ss_pred HHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041667 375 NLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAE 454 (659)
Q Consensus 375 NqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAe 454 (659)
+..+++.+.- .+.-+|+|+|.|.| .+...|+.+-. ..+++||+... ..++.+.+++
T Consensus 20 ~~~ll~~~~~--------~~~~~vLDiGcG~G----~~~~~la~~~~----~~~v~gvD~s~---~~i~~a~~~~----- 75 (258)
T PRK01683 20 ARDLLARVPL--------ENPRYVVDLGCGPG----NSTELLVERWP----AARITGIDSSP---AMLAEARSRL----- 75 (258)
T ss_pred HHHHHhhCCC--------cCCCEEEEEcccCC----HHHHHHHHHCC----CCEEEEEECCH---HHHHHHHHhC-----
Confidence 4456666541 23468999999988 33456666532 25899999752 3344333321
Q ss_pred HcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEEEec
Q 041667 455 RVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQ 528 (659)
Q Consensus 455 slgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtlVEq 528 (659)
-..+|.. . .++++... ..=+ +|-|.+.|||++| +...+-+..+.|+|.-.+++.-
T Consensus 76 ---~~~~~~~--~-d~~~~~~~----~~fD--~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 76 ---PDCQFVE--A-DIASWQPP----QALD--LIFANASLQWLPD-------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ---CCCeEEE--C-chhccCCC----CCcc--EEEEccChhhCCC-------HHHHHHHHHHhcCCCcEEEEEC
Confidence 1233332 2 33332211 1112 3345567888865 2334444457889998887753
No 34
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=74.02 E-value=44 Score=37.59 Aligned_cols=101 Identities=17% Similarity=0.187 Sum_probs=58.5
Q ss_pred eeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCC
Q 041667 395 KIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLS 474 (659)
Q Consensus 395 ~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~ 474 (659)
.-+|+|+|.|.|. +...|+.+. | .++|||+.+ +..++.+.++. ...+...+|.... +.++.
T Consensus 267 ~~~vLDiGcG~G~----~~~~la~~~-~----~~v~gvDiS---~~~l~~A~~~~----~~~~~~v~~~~~d---~~~~~ 327 (475)
T PLN02336 267 GQKVLDVGCGIGG----GDFYMAENF-D----VHVVGIDLS---VNMISFALERA----IGRKCSVEFEVAD---CTKKT 327 (475)
T ss_pred CCEEEEEeccCCH----HHHHHHHhc-C----CEEEEEECC---HHHHHHHHHHh----hcCCCceEEEEcC---cccCC
Confidence 4589999999985 345677654 2 489999975 24454443332 2333445554332 22221
Q ss_pred ccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHH-HHccCCcEEEEEe
Q 041667 475 RDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRR-VKGLSPSVVTLVE 527 (659)
Q Consensus 475 ~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~-VrsL~PkVVtlVE 527 (659)
+.++..=+|-|...++|++| +. .+|+. .+.|+|.-.+++.
T Consensus 328 -----~~~~~fD~I~s~~~l~h~~d-------~~-~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 328 -----YPDNSFDVIYSRDTILHIQD-------KP-ALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred -----CCCCCEEEEEECCcccccCC-------HH-HHHHHHHHHcCCCeEEEEE
Confidence 12232334556667888864 23 45544 5788999887664
No 35
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=73.74 E-value=39 Score=33.22 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=22.1
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCC
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADG 435 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~ 435 (659)
-+|+|+|.|.|. ++..|+.+. + .+++||+..
T Consensus 15 ~~iLDiGcG~G~----~~~~l~~~~-~----~~~~giD~s 45 (194)
T TIGR02081 15 SRVLDLGCGDGE----LLALLRDEK-Q----VRGYGIEID 45 (194)
T ss_pred CEEEEeCCCCCH----HHHHHHhcc-C----CcEEEEeCC
Confidence 379999999985 567777653 2 356888764
No 36
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=72.41 E-value=47 Score=33.14 Aligned_cols=117 Identities=21% Similarity=0.194 Sum_probs=62.7
Q ss_pred hhhhhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHH
Q 041667 370 GFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKL 449 (659)
Q Consensus 370 ah~tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL 449 (659)
++-.....+++.+..+ -.+.-+|+|+|.|.|. +...|+.+ + .+||||+.. +..++...+++
T Consensus 37 ~~~~~~~~~~~~l~~~------~~~~~~vLDiGcG~G~----~~~~la~~--~----~~v~gvD~s---~~~i~~a~~~~ 97 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKD------PLKGKRVLDAGCGTGL----LSIELAKR--G----AIVKAVDIS---EQMVQMARNRA 97 (219)
T ss_pred HHHHHHHHHHHHHhcC------CCCCCEEEEEeCCCCH----HHHHHHHC--C----CEEEEEECC---HHHHHHHHHHH
Confidence 3445556677777521 1235689999999885 66667664 2 389999975 24455454444
Q ss_pred HHHHHHcCc--eeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHH-ccCCcEEEEE
Q 041667 450 SQVAERVGV--CLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVK-GLSPSVVTLV 526 (659)
Q Consensus 450 ~~fAeslgV--pFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~Vr-sL~PkVVtlV 526 (659)
. ..++ .++|.. . .++++. ..=+. |-+...++|++.+. ...+++.+. .++|.+++..
T Consensus 98 ~----~~~~~~~i~~~~--~-d~~~~~------~~fD~--ii~~~~l~~~~~~~------~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 98 Q----GRDVAGNVEFEV--N-DLLSLC------GEFDI--VVCMDVLIHYPASD------MAKALGHLASLTKERVIFTF 156 (219)
T ss_pred H----hcCCCCceEEEE--C-ChhhCC------CCcCE--EEEhhHHHhCCHHH------HHHHHHHHHHHhCCCEEEEE
Confidence 3 2333 344543 2 333332 11122 33344567765321 345666664 4566666553
No 37
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=72.33 E-value=27 Score=35.18 Aligned_cols=101 Identities=13% Similarity=0.068 Sum_probs=55.4
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCc
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSR 475 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~ 475 (659)
-.|+|+|.|.|.. +..|+.+-+ ..++|||+.. +..++.+.+++. ++ +|. .. .+.+
T Consensus 45 ~~VLDiGCG~G~~----~~~L~~~~~----~~~v~giDiS---~~~l~~A~~~~~------~~--~~~--~~-d~~~--- 99 (204)
T TIGR03587 45 ASILELGANIGMN----LAALKRLLP----FKHIYGVEIN---EYAVEKAKAYLP------NI--NII--QG-SLFD--- 99 (204)
T ss_pred CcEEEEecCCCHH----HHHHHHhCC----CCeEEEEECC---HHHHHHHHhhCC------CC--cEE--Ee-eccC---
Confidence 3599999999944 444444321 2589999875 244544433221 22 222 11 2222
Q ss_pred cccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEEEeccC
Q 041667 476 DSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQET 530 (659)
Q Consensus 476 ~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtlVEqEa 530 (659)
...++..=+|-|...|||++.+ -+..+++.+.+..=+.++++|-..
T Consensus 100 ---~~~~~sfD~V~~~~vL~hl~p~------~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 100 ---PFKDNFFDLVLTKGVLIHINPD------NLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred ---CCCCCCEEEEEECChhhhCCHH------HHHHHHHHHHhhcCcEEEEEEeeC
Confidence 1122222234456667888532 245777777777667888888653
No 38
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=72.09 E-value=15 Score=38.88 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=58.5
Q ss_pred eeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCC
Q 041667 395 KIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLS 474 (659)
Q Consensus 395 ~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~ 474 (659)
-=||+|+|.| |-.+...+|++- | .++|||+.+ ....+.+ .+.++..|++=...++.. ...++.
T Consensus 63 G~~vLDiGcG----wG~~~~~~a~~~-g----~~v~gitlS---~~Q~~~a----~~~~~~~gl~~~v~v~~~-D~~~~~ 125 (273)
T PF02353_consen 63 GDRVLDIGCG----WGGLAIYAAERY-G----CHVTGITLS---EEQAEYA----RERIREAGLEDRVEVRLQ-DYRDLP 125 (273)
T ss_dssp T-EEEEES-T----TSHHHHHHHHHH-------EEEEEES----HHHHHHH----HHHHHCSTSSSTEEEEES--GGG--
T ss_pred CCEEEEeCCC----ccHHHHHHHHHc-C----cEEEEEECC---HHHHHHH----HHHHHhcCCCCceEEEEe-eccccC
Confidence 3489998666 778999999986 3 689999975 2334433 344566787633344444 344443
Q ss_pred ccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEEe
Q 041667 475 RDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLVE 527 (659)
Q Consensus 475 ~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlVE 527 (659)
. .-| + |-+.-.+-|+..+ ....|++.+ +-|+|.-..++.
T Consensus 126 ~-----~fD-~--IvSi~~~Ehvg~~------~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 126 G-----KFD-R--IVSIEMFEHVGRK------NYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ------S-S-E--EEEESEGGGTCGG------GHHHHHHHHHHHSETTEEEEEE
T ss_pred C-----CCC-E--EEEEechhhcChh------HHHHHHHHHHHhcCCCcEEEEE
Confidence 3 122 2 2233445666432 256788887 678999888774
No 39
>PRK05785 hypothetical protein; Provisional
Probab=71.24 E-value=66 Score=32.89 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=51.2
Q ss_pred eeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCC
Q 041667 395 KIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLS 474 (659)
Q Consensus 395 ~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~ 474 (659)
.-.|+|+|.|.|.- ...|+.+- | .+||||+.. ++-|+....+ . ++ +.. ..+++
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~-~----~~v~gvD~S---~~Ml~~a~~~--------~---~~--~~~-d~~~l- 104 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVF-K----YYVVALDYA---ENMLKMNLVA--------D---DK--VVG-SFEAL- 104 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhc-C----CEEEEECCC---HHHHHHHHhc--------c---ce--EEe-chhhC-
Confidence 34799999999943 44555553 2 489999975 2334432211 1 11 222 34433
Q ss_pred ccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEEe
Q 041667 475 RDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLVE 527 (659)
Q Consensus 475 ~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlVE 527 (659)
...++..=+|-|.+.|||++|. +.+|+.+ |-|+|.++ ++|
T Consensus 105 ----p~~d~sfD~v~~~~~l~~~~d~--------~~~l~e~~RvLkp~~~-ile 145 (226)
T PRK05785 105 ----PFRDKSFDVVMSSFALHASDNI--------EKVIAEFTRVSRKQVG-FIA 145 (226)
T ss_pred ----CCCCCCEEEEEecChhhccCCH--------HHHHHHHHHHhcCceE-EEE
Confidence 2334444455566678987652 3455554 67789543 444
No 40
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=68.68 E-value=1.2e+02 Score=29.70 Aligned_cols=100 Identities=22% Similarity=0.201 Sum_probs=54.1
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDL 473 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL 473 (659)
+..+|+|+|.|.|. +...|+.+ + | ..++|+|+... ..++.+.+++. -.++| +.. .++++
T Consensus 34 ~~~~vLDlG~G~G~----~~~~l~~~--~-~-~~~~~~~D~~~---~~~~~~~~~~~-------~~~~~--~~~-d~~~~ 92 (240)
T TIGR02072 34 IPASVLDIGCGTGY----LTRALLKR--F-P-QAEFIALDISA---GMLAQAKTKLS-------ENVQF--ICG-DAEKL 92 (240)
T ss_pred CCCeEEEECCCccH----HHHHHHHh--C-C-CCcEEEEeChH---HHHHHHHHhcC-------CCCeE--Eec-chhhC
Confidence 34689999999985 34445544 2 2 36799999752 33444433332 12222 333 34443
Q ss_pred CccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEEe
Q 041667 474 SRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLVE 527 (659)
Q Consensus 474 ~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlVE 527 (659)
.. .++..=+|-|.+.|||+.+ + ..+|+.+ +.|+|.-++++.
T Consensus 93 ~~-----~~~~fD~vi~~~~l~~~~~-------~-~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 93 PL-----EDSSFDLIVSNLALQWCDD-------L-SQALSELARVLKPGGLLAFS 134 (240)
T ss_pred CC-----CCCceeEEEEhhhhhhccC-------H-HHHHHHHHHHcCCCcEEEEE
Confidence 21 1122223334566788744 2 3466665 568998777664
No 41
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=67.98 E-value=28 Score=34.48 Aligned_cols=98 Identities=19% Similarity=0.201 Sum_probs=52.9
Q ss_pred eeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCC
Q 041667 395 KIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLS 474 (659)
Q Consensus 395 ~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~ 474 (659)
.-+|+|+|.|.|. .++.=+ .+. | ..++|+|+... ..++.+ .+.++..|++ .+..+.. +++++.
T Consensus 43 ~~~vLDiGcGtG~--~s~~la--~~~---~-~~~V~~iD~s~---~~~~~a----~~~~~~~~~~-~i~~i~~-d~~~~~ 105 (181)
T TIGR00138 43 GKKVIDIGSGAGF--PGIPLA--IAR---P-ELKLTLLESNH---KKVAFL----REVKAELGLN-NVEIVNG-RAEDFQ 105 (181)
T ss_pred CCeEEEecCCCCc--cHHHHH--HHC---C-CCeEEEEeCcH---HHHHHH----HHHHHHhCCC-CeEEEec-chhhcc
Confidence 3589999999883 222222 221 1 25799999753 333333 3345556764 2444544 455542
Q ss_pred ccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEEe
Q 041667 475 RDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLVE 527 (659)
Q Consensus 475 ~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlVE 527 (659)
. -..=+.++.|+ +|++ +.+++.+ +-|+|.-+++++
T Consensus 106 ~----~~~fD~I~s~~---~~~~-----------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 106 H----EEQFDVITSRA---LASL-----------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred c----cCCccEEEehh---hhCH-----------HHHHHHHHHhcCCCCEEEEE
Confidence 1 11223555554 4433 2355554 558999888875
No 42
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=62.71 E-value=81 Score=34.34 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=52.9
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCc
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSR 475 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~ 475 (659)
=+|+|+|.|.|. ++..++.+ | + -+++||+... ..+.. -+...+++... -...+ +.. .++++..
T Consensus 123 ~~VLDvGCG~G~----~~~~~~~~--g-~--~~v~GiDpS~---~ml~q-~~~~~~~~~~~-~~v~~--~~~-~ie~lp~ 185 (314)
T TIGR00452 123 RTILDVGCGSGY----HMWRMLGH--G-A--KSLVGIDPTV---LFLCQ-FEAVRKLLDND-KRAIL--EPL-GIEQLHE 185 (314)
T ss_pred CEEEEeccCCcH----HHHHHHHc--C-C--CEEEEEcCCH---HHHHH-HHHHHHHhccC-CCeEE--EEC-CHHHCCC
Confidence 489999999886 34455543 3 3 2789999752 22222 12222222111 12222 222 4555542
Q ss_pred cccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEEEe
Q 041667 476 DSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVE 527 (659)
Q Consensus 476 ~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtlVE 527 (659)
. +..=+|-|+..|||+++ |.+.|-..-+.|+|.-.+++|
T Consensus 186 ~------~~FD~V~s~gvL~H~~d-------p~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 186 L------YAFDTVFSMGVLYHRKS-------PLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred C------CCcCEEEEcchhhccCC-------HHHHHHHHHHhcCCCCEEEEE
Confidence 1 11223445556888753 445555555779999766654
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=60.42 E-value=1.9e+02 Score=31.28 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=52.3
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCc
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSR 475 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~ 475 (659)
-+|+|+|.|.|. +...++.+ | +. +++||+... ..+... +...+++. .....+|.. . .++++..
T Consensus 124 ~~VLDIGCG~G~----~~~~la~~--g-~~--~V~GiD~S~---~~l~q~-~a~~~~~~-~~~~i~~~~--~-d~e~lp~ 186 (322)
T PRK15068 124 RTVLDVGCGNGY----HMWRMLGA--G-AK--LVVGIDPSQ---LFLCQF-EAVRKLLG-NDQRAHLLP--L-GIEQLPA 186 (322)
T ss_pred CEEEEeccCCcH----HHHHHHHc--C-CC--EEEEEcCCH---HHHHHH-HHHHHhcC-CCCCeEEEe--C-CHHHCCC
Confidence 379999998884 33355554 3 32 599999542 222110 11112221 122334433 2 4444432
Q ss_pred cccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEEEe
Q 041667 476 DSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVE 527 (659)
Q Consensus 476 ~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtlVE 527 (659)
++-.=+|-|...|||+.| +.+.|-+..+.|+|.-.+++|
T Consensus 187 ------~~~FD~V~s~~vl~H~~d-------p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 187 ------LKAFDTVFSMGVLYHRRS-------PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ------cCCcCEEEECChhhccCC-------HHHHHHHHHHhcCCCcEEEEE
Confidence 111113335556888743 455555556788999777665
No 44
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=60.10 E-value=79 Score=34.54 Aligned_cols=142 Identities=15% Similarity=0.102 Sum_probs=82.3
Q ss_pred eeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCce-eEEEEEecCCCCCC
Q 041667 395 KIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVC-LRFNVAICLKFDDL 473 (659)
Q Consensus 395 ~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVp-FEF~~V~~~~ledL 473 (659)
...|||||.|.|..=..||++|..+ +++ .+-.+|+-+ .+.|+...++|. .-..| +++++|.. ...+.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~--~~~--~~Y~plDIS---~~~L~~a~~~L~----~~~~p~l~v~~l~g-dy~~~ 144 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQ--KKS--VDYYALDVS---RSELQRTLAELP----LGNFSHVRCAGLLG-TYDDG 144 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhc--CCC--ceEEEEECC---HHHHHHHHHhhh----hccCCCeEEEEEEe-cHHHH
Confidence 3479999999999999999999843 223 677888875 367888888876 12244 77888776 33321
Q ss_pred Ccc--ccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHc--cCCcEEEEEeccCCC---------C-CCChHH
Q 041667 474 SRD--SLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKG--LSPSVVTLVEQETNT---------N-TAPFMA 539 (659)
Q Consensus 474 ~~~--~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~Vrs--L~PkVVtlVEqEan~---------N-s~~F~~ 539 (659)
-.. .-.....-.++.-.-..+..+..+ ....||+.++. |+|.-..|+=-|... | ......
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~------ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa 218 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRP------EAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTR 218 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHH------HHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhH
Confidence 110 000111122333222334443221 13579999977 888755555333321 2 223444
Q ss_pred HH-HHHHHHHHHHHHH
Q 041667 540 RV-NEACAYYGALFDS 554 (659)
Q Consensus 540 RF-~EAL~yYsAlFDS 554 (659)
+| .+.|++--..+++
T Consensus 219 ~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 219 RFVLNGLVHANEILGS 234 (319)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 55 4677777776664
No 45
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=59.57 E-value=94 Score=30.88 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=54.1
Q ss_pred EEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCcc
Q 041667 397 HVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRD 476 (659)
Q Consensus 397 HIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~~ 476 (659)
+|+|+|.|.|. +...++.+-+ ..++|||+.+ +..++...+++ +..|+.-....+.. ...+...+
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~~----~~~v~gid~s---~~~~~~a~~~~----~~~gl~~~i~~~~~-d~~~~~~~ 65 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERHP----HLQLHGYTIS---PEQAEVGRERI----RALGLQGRIRIFYR-DSAKDPFP 65 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHCC----CCEEEEEECC---HHHHHHHHHHH----HhcCCCcceEEEec-ccccCCCC
Confidence 68999888775 4456666532 2689999874 24444444443 34455444444433 22211110
Q ss_pred ccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEE
Q 041667 477 SLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLV 526 (659)
Q Consensus 477 ~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlV 526 (659)
..=+ +|-+...+||+++ ...+|+.+ +.|+|.-.+++
T Consensus 66 ----~~fD--~I~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 66 ----DTYD--LVFGFEVIHHIKD--------KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred ----CCCC--EeehHHHHHhCCC--------HHHHHHHHHHHcCCCCEEEE
Confidence 1112 2334455778753 24677766 56899976654
No 46
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=56.73 E-value=36 Score=34.50 Aligned_cols=102 Identities=21% Similarity=0.260 Sum_probs=57.6
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCc
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSR 475 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~ 475 (659)
-+|||+|=|.| .+..+|+.+- | .||+|..+.| ..++.+.+ .=..+|.+-.- ++.
T Consensus 102 ~~vvDvGGG~G----~~~~~l~~~~---P-~l~~~v~Dlp----~v~~~~~~---------~~rv~~~~gd~--f~~--- 155 (241)
T PF00891_consen 102 KTVVDVGGGSG----HFAIALARAY---P-NLRATVFDLP----EVIEQAKE---------ADRVEFVPGDF--FDP--- 155 (241)
T ss_dssp SEEEEET-TTS----HHHHHHHHHS---T-TSEEEEEE-H----HHHCCHHH---------TTTEEEEES-T--TTC---
T ss_pred cEEEeccCcch----HHHHHHHHHC---C-CCcceeeccH----hhhhcccc---------ccccccccccH--Hhh---
Confidence 47999999998 4555666653 3 5899999986 22322222 22233432221 111
Q ss_pred cccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCc---EEEEEeccCCCCCC
Q 041667 476 DSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPS---VVTLVEQETNTNTA 535 (659)
Q Consensus 476 ~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~Pk---VVtlVEqEan~Ns~ 535 (659)
+. . +=+|-+..-||+.+|+.+ ..+|+.+ ++|.|. .++|+|.-.+....
T Consensus 156 --~P---~-~D~~~l~~vLh~~~d~~~------~~iL~~~~~al~pg~~g~llI~e~~~~~~~~ 207 (241)
T PF00891_consen 156 --LP---V-ADVYLLRHVLHDWSDEDC------VKILRNAAAALKPGKDGRLLIIEMVLPDDRT 207 (241)
T ss_dssp --CS---S-ESEEEEESSGGGS-HHHH------HHHHHHHHHHSEECTTEEEEEEEEEECSSSS
T ss_pred --hc---c-ccceeeehhhhhcchHHH------HHHHHHHHHHhCCCCCCeEEEEeeccCCCCC
Confidence 11 1 446666777898887642 4577766 688886 66677876554433
No 47
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=56.17 E-value=52 Score=27.12 Aligned_cols=93 Identities=24% Similarity=0.233 Sum_probs=49.9
Q ss_pred EecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCcccc
Q 041667 399 IDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSL 478 (659)
Q Consensus 399 IDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~~~L 478 (659)
+|+|.|.|.-...| +.++ -.++|+++.. ...++...+ ..+..++. .+.. +.+++
T Consensus 1 LdiG~G~G~~~~~l----~~~~-----~~~v~~~D~~---~~~~~~~~~----~~~~~~~~----~~~~-d~~~l----- 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAAL----AKRG-----GASVTGIDIS---EEMLEQARK----RLKNEGVS----FRQG-DAEDL----- 54 (95)
T ss_dssp EEET-TTSHHHHHH----HHTT-----TCEEEEEES----HHHHHHHHH----HTTTSTEE----EEES-BTTSS-----
T ss_pred CEecCcCCHHHHHH----Hhcc-----CCEEEEEeCC---HHHHHHHHh----cccccCch----heee-hHHhC-----
Confidence 57777777554444 4442 2689999975 233443333 23334444 2222 34444
Q ss_pred CCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEE
Q 041667 479 GCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTL 525 (659)
Q Consensus 479 ~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtl 525 (659)
.+.++-.=+|-|...+||+.+ +..+|+.+ |-|+|.-+.+
T Consensus 55 ~~~~~sfD~v~~~~~~~~~~~--------~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 55 PFPDNSFDVVFSNSVLHHLED--------PEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SS-TT-EEEEEEESHGGGSSH--------HHHHHHHHHHHEEEEEEEE
T ss_pred ccccccccccccccceeeccC--------HHHHHHHHHHHcCcCeEEe
Confidence 334555657778888898822 34555554 7788887654
No 48
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=56.10 E-value=1.2e+02 Score=32.96 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=70.4
Q ss_pred hhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041667 373 AANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQV 452 (659)
Q Consensus 373 tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~f 452 (659)
.|-.+.+|.+.+.. .=++--||+|||.| |=.|+.-.|.+-+ +++|||+-+. ..++.+.+|
T Consensus 55 eAQ~~k~~~~~~kl----~L~~G~~lLDiGCG----WG~l~~~aA~~y~-----v~V~GvTlS~---~Q~~~~~~r---- 114 (283)
T COG2230 55 EAQRAKLDLILEKL----GLKPGMTLLDIGCG----WGGLAIYAAEEYG-----VTVVGVTLSE---EQLAYAEKR---- 114 (283)
T ss_pred HHHHHHHHHHHHhc----CCCCCCEEEEeCCC----hhHHHHHHHHHcC-----CEEEEeeCCH---HHHHHHHHH----
Confidence 46667777776421 12345789999655 8899999999863 6999999762 445444443
Q ss_pred HHHcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHH-ccCCcEEEEE
Q 041667 453 AERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVK-GLSPSVVTLV 526 (659)
Q Consensus 453 AeslgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~Vr-sL~PkVVtlV 526 (659)
++..|+.=..+++.. ...++... -| .|-++=.+.|+..+. -+.|++.++ -|+|.-+.+.
T Consensus 115 ~~~~gl~~~v~v~l~-d~rd~~e~-----fD---rIvSvgmfEhvg~~~------~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 115 IAARGLEDNVEVRLQ-DYRDFEEP-----FD---RIVSVGMFEHVGKEN------YDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred HHHcCCCcccEEEec-cccccccc-----cc---eeeehhhHHHhCccc------HHHHHHHHHhhcCCCceEEE
Confidence 344565522333333 44454432 12 222334556765432 467888885 5678765544
No 49
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=54.15 E-value=3.5e+02 Score=30.72 Aligned_cols=66 Identities=15% Similarity=0.047 Sum_probs=38.2
Q ss_pred cccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEec
Q 041667 401 FDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAIC 467 (659)
Q Consensus 401 fdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~ 467 (659)
++++-|.==..|++.|..... .++.++|+++.-+.+-...-.+..+...++|+.+||||+...+..
T Consensus 20 vavSGG~DS~~Ll~~l~~~~~-~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~ 85 (436)
T PRK10660 20 VAFSGGLDSTVLLHLLVQWRT-ENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQL 85 (436)
T ss_pred EEecCCHHHHHHHHHHHHHHH-hcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 345555555677777764221 112367777765432111123334567788999999988776654
No 50
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=53.13 E-value=1.4e+02 Score=30.42 Aligned_cols=111 Identities=26% Similarity=0.367 Sum_probs=65.7
Q ss_pred HHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041667 376 LAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAER 455 (659)
Q Consensus 376 qAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAes 455 (659)
..+++|+.- .+.--++|+|.|.|.= + --||.+ | ..+|+|+-+. ..+ ++|.+.|+.
T Consensus 20 s~v~~a~~~--------~~~g~~LDlgcG~GRN--a--lyLA~~--G----~~VtAvD~s~---~al----~~l~~~a~~ 74 (192)
T PF03848_consen 20 SEVLEAVPL--------LKPGKALDLGCGEGRN--A--LYLASQ--G----FDVTAVDISP---VAL----EKLQRLAEE 74 (192)
T ss_dssp HHHHHHCTT--------S-SSEEEEES-TTSHH--H--HHHHHT--T-----EEEEEESSH---HHH----HHHHHHHHH
T ss_pred HHHHHHHhh--------cCCCcEEEcCCCCcHH--H--HHHHHC--C----CeEEEEECCH---HHH----HHHHHHHhh
Confidence 557788762 3445789999998851 1 235654 5 7899999752 333 346778999
Q ss_pred cCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHH-ccCCcEEEEE
Q 041667 456 VGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVK-GLSPSVVTLV 526 (659)
Q Consensus 456 lgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~Vr-sL~PkVVtlV 526 (659)
-+++++..... +++.. + +++.=+|.+...++++..+ -++.+++.++ .++|-.+.+.
T Consensus 75 ~~l~i~~~~~D---l~~~~---~---~~~yD~I~st~v~~fL~~~------~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 75 EGLDIRTRVAD---LNDFD---F---PEEYDFIVSTVVFMFLQRE------LRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp TT-TEEEEE-B---GCCBS-------TTTEEEEEEESSGGGS-GG------GHHHHHHHHHHTEEEEEEEEE
T ss_pred cCceeEEEEec---chhcc---c---cCCcCEEEEEEEeccCCHH------HHHHHHHHHHhhcCCcEEEEE
Confidence 99996666543 33322 1 1233355666777888643 2567777774 5799765544
No 51
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=52.63 E-value=76 Score=35.51 Aligned_cols=107 Identities=16% Similarity=0.120 Sum_probs=58.5
Q ss_pred EEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCcc
Q 041667 397 HVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRD 476 (659)
Q Consensus 397 HIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~~ 476 (659)
+|+|+|.|.|. +--.|+.+. | ..+||+|+.+. ..++.+.+.+......-.-.++|. ..+-++++...
T Consensus 231 ~VLDLGCGtGv----i~i~la~~~---P-~~~V~~vD~S~---~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~~~~ 297 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDKN---P-QAKVVFVDESP---MAVASSRLNVETNMPEALDRCEFM--INNALSGVEPF 297 (378)
T ss_pred eEEEEeccccH----HHHHHHHhC---C-CCEEEEEECCH---HHHHHHHHHHHHcCcccCceEEEE--EccccccCCCC
Confidence 79999999996 444566652 3 37999999863 456666555533321101133443 33122222211
Q ss_pred ccCCCCCceEEEeeeccccc-CCCCCCCCCChHHHHHH-HHHccCCcEEEEEe
Q 041667 477 SLGCEPDETLAVNFAFKLFR-MPDESVSTENPRDELLR-RVKGLSPSVVTLVE 527 (659)
Q Consensus 477 ~L~i~~gEaLaVN~~f~Lh~-L~desvs~~npRd~fL~-~VrsL~PkVVtlVE 527 (659)
.=+.|+.|-.|+.-+ +.+ +-...+++ .-+.|+|.-...++
T Consensus 298 -----~fDlIlsNPPfh~~~~~~~------~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 298 -----RFNAVLCNPPFHQQHALTD------NVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred -----CEEEEEECcCcccCccCCH------HHHHHHHHHHHHhcccCCEEEEE
Confidence 225777787775333 221 12234554 44688999777655
No 52
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=50.47 E-value=2.2e+02 Score=29.40 Aligned_cols=100 Identities=22% Similarity=0.301 Sum_probs=51.6
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCce-eEEEEEecCCCCCCC
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVC-LRFNVAICLKFDDLS 474 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVp-FEF~~V~~~~ledL~ 474 (659)
=+|+|+|.|.|. |.. .++... | + .-+||+|+.. +..++.+.++ ++..|++ .+| +.. .++++.
T Consensus 79 ~~VLDiG~G~G~-~~~---~~a~~~-g-~-~~~v~gvD~s---~~~l~~A~~~----~~~~g~~~v~~--~~~-d~~~l~ 141 (272)
T PRK11873 79 ETVLDLGSGGGF-DCF---LAARRV-G-P-TGKVIGVDMT---PEMLAKARAN----ARKAGYTNVEF--RLG-EIEALP 141 (272)
T ss_pred CEEEEeCCCCCH-HHH---HHHHHh-C-C-CCEEEEECCC---HHHHHHHHHH----HHHcCCCCEEE--EEc-chhhCC
Confidence 489999998873 221 122221 2 2 3489999975 2445444443 3344542 233 223 444433
Q ss_pred ccccCCCCC--ceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEEE
Q 041667 475 RDSLGCEPD--ETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLV 526 (659)
Q Consensus 475 ~~~L~i~~g--EaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtlV 526 (659)
+..+ +.|+.|++ +||.++. ...|=...+-|+|.-.+++
T Consensus 142 -----~~~~~fD~Vi~~~v--~~~~~d~-------~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 142 -----VADNSVDVIISNCV--INLSPDK-------ERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred -----CCCCceeEEEEcCc--ccCCCCH-------HHHHHHHHHHcCCCcEEEE
Confidence 1222 34555554 5666542 2334445678899866644
No 53
>PRK06922 hypothetical protein; Provisional
Probab=47.44 E-value=1.4e+02 Score=36.18 Aligned_cols=109 Identities=13% Similarity=0.171 Sum_probs=58.2
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCc
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSR 475 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~ 475 (659)
-.|+|+|.|.| .+...|+.+. | ..++|||+-+. ..++.+.+++ ...+..++| +.. ...++..
T Consensus 420 ~rVLDIGCGTG----~ls~~LA~~~---P-~~kVtGIDIS~---~MLe~Ararl----~~~g~~ie~--I~g-Da~dLp~ 481 (677)
T PRK06922 420 DTIVDVGAGGG----VMLDMIEEET---E-DKRIYGIDISE---NVIDTLKKKK----QNEGRSWNV--IKG-DAINLSS 481 (677)
T ss_pred CEEEEeCCCCC----HHHHHHHHhC---C-CCEEEEEECCH---HHHHHHHHHh----hhcCCCeEE--EEc-chHhCcc
Confidence 47999999988 3456677653 2 37999999762 4455554443 223444443 333 2223210
Q ss_pred cccCCCCCceEEEeeecccccCCC----CC--CCCCChHHHHHHH-HHccCCcEEEEE
Q 041667 476 DSLGCEPDETLAVNFAFKLFRMPD----ES--VSTENPRDELLRR-VKGLSPSVVTLV 526 (659)
Q Consensus 476 ~~L~i~~gEaLaVN~~f~Lh~L~d----es--vs~~npRd~fL~~-VrsL~PkVVtlV 526 (659)
.+.++.+=+|-|.+.||++.+ +. ..... ...+|+. .+.|+|.-.+++
T Consensus 482 ---~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~ed-l~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 482 ---SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEV-IKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred ---ccCCCCEEEEEEchHHHhhhhhcccccccccHHH-HHHHHHHHHHHcCCCcEEEE
Confidence 123343444445666777632 11 01122 2345554 589999865544
No 54
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=46.73 E-value=1.9e+02 Score=32.65 Aligned_cols=100 Identities=20% Similarity=0.161 Sum_probs=65.2
Q ss_pred CCCccchhhhhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHH
Q 041667 364 SPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLK 443 (659)
Q Consensus 364 sP~~kFah~tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~ 443 (659)
+-.-+||+-.+. |++... ..||+||..-+....=-.+-++|.+.++ ...+=+|=.+++.+.-.-++
T Consensus 86 ~~nG~FG~R~~~--ia~~~g----------~~v~~~~~~wg~~v~p~~v~~~L~~~~~--~~~V~~vH~ETSTGvlnpl~ 151 (383)
T COG0075 86 VVNGKFGERFAE--IAERYG----------AEVVVLEVEWGEAVDPEEVEEALDKDPD--IKAVAVVHNETSTGVLNPLK 151 (383)
T ss_pred EeCChHHHHHHH--HHHHhC----------CceEEEeCCCCCCCCHHHHHHHHhcCCC--ccEEEEEeccCcccccCcHH
Confidence 346678877754 555553 4699999998888888888888885432 33455555555543322355
Q ss_pred HHHHHHHHHHHHcCceeEEEEEecCCCCCCCccccCCC
Q 041667 444 AVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCE 481 (659)
Q Consensus 444 ~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~~~L~i~ 481 (659)
+++ +.|+..|.-+-...|.+.--+++..+.++++
T Consensus 152 ~I~----~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiD 185 (383)
T COG0075 152 EIA----KAAKEHGALLIVDAVSSLGGEPLKVDEWGID 185 (383)
T ss_pred HHH----HHHHHcCCEEEEEecccCCCcccchhhcCcc
Confidence 554 4666669888888887644556666666654
No 55
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=43.24 E-value=47 Score=25.58 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=26.8
Q ss_pred ceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEEEec
Q 041667 484 ETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQ 528 (659)
Q Consensus 484 EaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtlVEq 528 (659)
|.+-|||....-++. ...-++.++..|+.++|+-|++|-.
T Consensus 1 e~i~v~a~v~~~~fS-----gHad~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 1 EMIPVRARVEQIDFS-----GHADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp CEEE--SEEEESGCS-----SS-BHHHHHHHHHHHCSSEEEEESS
T ss_pred CEEEeEEEEEEEeec-----CCCCHHHHHHHHHhcCCCEEEEecC
Confidence 456677776543342 2345789999999999999999843
No 56
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=43.21 E-value=3.3e+02 Score=27.63 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=50.0
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCc
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSR 475 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~ 475 (659)
-+|+|+|.|.|. +...|+.+ | -++|+|+... ..++...++ .....| +.. .++++.
T Consensus 44 ~~vLDiGcG~G~----~~~~l~~~--~----~~v~~~D~s~---~~l~~a~~~--------~~~~~~--~~~-d~~~~~- 98 (251)
T PRK10258 44 THVLDAGCGPGW----MSRYWRER--G----SQVTALDLSP---PMLAQARQK--------DAADHY--LAG-DIESLP- 98 (251)
T ss_pred CeEEEeeCCCCH----HHHHHHHc--C----CeEEEEECCH---HHHHHHHhh--------CCCCCE--EEc-CcccCc-
Confidence 469999999983 55667654 2 3799999752 334333222 111122 222 344432
Q ss_pred cccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEEE
Q 041667 476 DSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLV 526 (659)
Q Consensus 476 ~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtlV 526 (659)
..++..=+|-+.+.||+++| +...+-+..+-|+|.-++++
T Consensus 99 ----~~~~~fD~V~s~~~l~~~~d-------~~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 99 ----LATATFDLAWSNLAVQWCGN-------LSTALRELYRVVRPGGVVAF 138 (251)
T ss_pred ----CCCCcEEEEEECchhhhcCC-------HHHHHHHHHHHcCCCeEEEE
Confidence 12221222334456676644 33344445578899866654
No 57
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=42.86 E-value=9.9 Score=32.78 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=17.6
Q ss_pred EecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCC
Q 041667 399 IDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGT 436 (659)
Q Consensus 399 IDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~ 436 (659)
+|+|.|.|.==..|++.+ +..++|+++.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~--------~~~~~~~~D~s~ 30 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL--------PDARYTGVDISP 30 (99)
T ss_dssp -EESTTTS-TTTTHHHHC---------EEEEEEEESSS
T ss_pred CEeCccChHHHHHHHHhC--------CCCEEEEEECCH
Confidence 466777665433444443 358999999764
No 58
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=42.56 E-value=3.6e+02 Score=26.97 Aligned_cols=97 Identities=21% Similarity=0.243 Sum_probs=53.4
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCc
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSR 475 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~ 475 (659)
-.|+|+|.|.| +.++. +|.+. | ..++|+|+... ..++.+ .+.++..+++- ++.+.. ..+++..
T Consensus 47 ~~VLDiGcGtG--~~al~--la~~~---~-~~~V~giD~s~---~~l~~A----~~~~~~~~l~~-i~~~~~-d~~~~~~ 109 (187)
T PRK00107 47 ERVLDVGSGAG--FPGIP--LAIAR---P-ELKVTLVDSLG---KKIAFL----REVAAELGLKN-VTVVHG-RAEEFGQ 109 (187)
T ss_pred CeEEEEcCCCC--HHHHH--HHHHC---C-CCeEEEEeCcH---HHHHHH----HHHHHHcCCCC-EEEEec-cHhhCCC
Confidence 46899988888 33332 23222 1 25899998752 334433 34455566641 333444 4444432
Q ss_pred cccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHH-HHccCCcEEEEEe
Q 041667 476 DSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRR-VKGLSPSVVTLVE 527 (659)
Q Consensus 476 ~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~-VrsL~PkVVtlVE 527 (659)
-.+-+.++.|+. . ..+.+++. .+.|+|.-.+++.
T Consensus 110 ----~~~fDlV~~~~~-------------~-~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 110 ----EEKFDVVTSRAV-------------A-SLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred ----CCCccEEEEccc-------------c-CHHHHHHHHHHhcCCCeEEEEE
Confidence 123456665531 1 13456666 4789999888764
No 59
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=42.43 E-value=35 Score=36.42 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=21.5
Q ss_pred CCceeEEEecccCCCcchHHHHHHHHh
Q 041667 392 GSNKIHVIDFDIGQGGQYMNLFHALSA 418 (659)
Q Consensus 392 G~~~VHIIDfdI~~G~QWpsLIqaLA~ 418 (659)
|++.+||||+|-+.+.+ ..+|.++++
T Consensus 56 Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 56 GLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 89999999999876777 556777777
No 60
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=41.72 E-value=62 Score=32.71 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=72.0
Q ss_pred ceeEEEecccC---CCcchHHHHHHHHhCCCCCCCeEEE------EEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEE
Q 041667 394 NKIHVIDFDIG---QGGQYMNLFHALSARLNGKPAIVKV------TAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNV 464 (659)
Q Consensus 394 ~~VHIIDfdI~---~G~QWpsLIqaLA~R~~G~Pp~LRI------TgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~ 464 (659)
.+|+||.|=-+ -|-.-..+|.+|+.+ | +.+ |+|... +....++.-+..|+++.++.|-|..
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~----~~~~~y~~t~~IN~d----d~~~~~~~fVk~fie~~~~~~P~~~ 128 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA--K----FPPVKYQTTTIINAD----DAIVGTGMFVKSSAKKGKKENPWSQ 128 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc--C----CCcccccceEEEECc----cchhhHHHHHHHHHHHhcccCCcce
Confidence 47999999754 445788999999665 2 667 888754 3356688899999999999888776
Q ss_pred EecCCCCCCCccccCCCC-Cce-EEEeeecccccCCCCCCCCCChHHHHHHHHHcc
Q 041667 465 AICLKFDDLSRDSLGCEP-DET-LAVNFAFKLFRMPDESVSTENPRDELLRRVKGL 518 (659)
Q Consensus 465 V~~~~ledL~~~~L~i~~-gEa-LaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL 518 (659)
|..+. +......+++.. .++ .+|+-.-.+.+.-....+ ....+.++..|+.|
T Consensus 129 vllD~-~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~-~ee~e~~~~li~~l 182 (184)
T TIGR01626 129 VVLDD-KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALS-DSDIQTVISLVNGL 182 (184)
T ss_pred EEECC-cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCC-HHHHHHHHHHHHHH
Confidence 66522 333334556644 367 688876655443222211 12234456666543
No 61
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=40.50 E-value=2.7e+02 Score=27.55 Aligned_cols=98 Identities=22% Similarity=0.339 Sum_probs=50.7
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCc--eeEEEEEecCCCC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGV--CLRFNVAICLKFD 471 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgV--pFEF~~V~~~~le 471 (659)
+.-+|+|+|.|.|. +...|+.+ | .++|||+.. ...++.+.+++ ...++ ...|.. . .++
T Consensus 63 ~~~~vLDvGcG~G~----~~~~l~~~--~----~~v~~~D~s---~~~i~~a~~~~----~~~~~~~~i~~~~--~-d~~ 122 (230)
T PRK07580 63 TGLRILDAGCGVGS----LSIPLARR--G----AKVVASDIS---PQMVEEARERA----PEAGLAGNITFEV--G-DLE 122 (230)
T ss_pred CCCEEEEEeCCCCH----HHHHHHHc--C----CEEEEEECC---HHHHHHHHHHH----HhcCCccCcEEEE--c-Cch
Confidence 34689999998885 34455554 2 249999975 24455554443 23343 334443 2 222
Q ss_pred CCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHcc-CCcEEEE
Q 041667 472 DLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGL-SPSVVTL 525 (659)
Q Consensus 472 dL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL-~PkVVtl 525 (659)
.. .+..=+|-|...|||.+++. ...+++.+.++ ++.++++
T Consensus 123 ~~--------~~~fD~v~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 123 SL--------LGRFDTVVCLDVLIHYPQED------AARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hc--------cCCcCEEEEcchhhcCCHHH------HHHHHHHHHhhcCCeEEEE
Confidence 11 11111222445567776542 35677777655 4445444
No 62
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=38.77 E-value=3e+02 Score=30.67 Aligned_cols=96 Identities=20% Similarity=0.302 Sum_probs=52.2
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCc
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSR 475 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~ 475 (659)
=+|+|+|.|.|. +...|+.+.+ .+||||+.. +..++.+.++.. ++.++|. .. ...++.
T Consensus 169 ~rVLDIGcG~G~----~a~~la~~~g-----~~V~giDlS---~~~l~~A~~~~~------~l~v~~~--~~-D~~~l~- 226 (383)
T PRK11705 169 MRVLDIGCGWGG----LARYAAEHYG-----VSVVGVTIS---AEQQKLAQERCA------GLPVEIR--LQ-DYRDLN- 226 (383)
T ss_pred CEEEEeCCCccH----HHHHHHHHCC-----CEEEEEeCC---HHHHHHHHHHhc------cCeEEEE--EC-chhhcC-
Confidence 489999987664 5556666542 489999875 245555544431 3333333 22 222321
Q ss_pred cccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEE
Q 041667 476 DSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLV 526 (659)
Q Consensus 476 ~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlV 526 (659)
..=+.|+ +...++|++++ + .+.+++.+ +-|+|.-.+++
T Consensus 227 -----~~fD~Iv--s~~~~ehvg~~-----~-~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 227 -----GQFDRIV--SVGMFEHVGPK-----N-YRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred -----CCCCEEE--EeCchhhCChH-----H-HHHHHHHHHHHcCCCcEEEE
Confidence 1112332 33456777542 1 34566655 67899977765
No 63
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=38.05 E-value=2.6e+02 Score=28.47 Aligned_cols=30 Identities=20% Similarity=0.073 Sum_probs=21.6
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCC
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADG 435 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~ 435 (659)
-.|+|+|.|.|. =...||.+ | ..+|||+-.
T Consensus 36 ~rvLd~GCG~G~----da~~LA~~--G----~~V~gvD~S 65 (213)
T TIGR03840 36 ARVFVPLCGKSL----DLAWLAEQ--G----HRVLGVELS 65 (213)
T ss_pred CeEEEeCCCchh----HHHHHHhC--C----CeEEEEeCC
Confidence 489999998884 23345654 4 589999975
No 64
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=36.66 E-value=3.9e+02 Score=25.60 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=52.0
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCc
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSR 475 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~ 475 (659)
=+|+|+|.|.|. |...|+.+ + -++|+|+-+. ..++.+.+++.. .+ .+..+.. +..++..
T Consensus 15 ~~vLEiG~G~G~----lt~~l~~~-~-----~~v~~vE~~~---~~~~~~~~~~~~----~~---~v~ii~~-D~~~~~~ 73 (169)
T smart00650 15 DTVLEIGPGKGA----LTEELLER-A-----ARVTAIEIDP---RLAPRLREKFAA----AD---NLTVIHG-DALKFDL 73 (169)
T ss_pred CEEEEECCCccH----HHHHHHhc-C-----CeEEEEECCH---HHHHHHHHHhcc----CC---CEEEEEC-chhcCCc
Confidence 379999999875 66666766 2 3799999762 334444444321 11 2334444 4444432
Q ss_pred cccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHc--cCCcEEEEEeccC
Q 041667 476 DSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKG--LSPSVVTLVEQET 530 (659)
Q Consensus 476 ~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~Vrs--L~PkVVtlVEqEa 530 (659)
.. ..-..++-|..+. +. -+.+.+.++. +.+..+++++.|.
T Consensus 74 ~~---~~~d~vi~n~Py~---~~---------~~~i~~~l~~~~~~~~~~l~~q~e~ 115 (169)
T smart00650 74 PK---LQPYKVVGNLPYN---IS---------TPILFKLLEEPPAFRDAVLMVQKEV 115 (169)
T ss_pred cc---cCCCEEEECCCcc---cH---------HHHHHHHHhcCCCcceEEEEEEHHH
Confidence 21 1123555554432 21 1233334433 3477888888774
No 65
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=36.36 E-value=4.3e+02 Score=26.03 Aligned_cols=101 Identities=19% Similarity=0.336 Sum_probs=51.9
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCc-eeEEEEEecCCCCC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGV-CLRFNVAICLKFDD 472 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgV-pFEF~~V~~~~led 472 (659)
....|+|+|.|.|. +...|+.. | .++++|+.+. ..++...+++. ..++ .+.|.. . .+++
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~--~----~~v~~iD~s~---~~~~~a~~~~~----~~~~~~~~~~~--~-d~~~ 104 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL--G----ANVTGIDASE---ENIEVAKLHAK----KDPLLKIEYRC--T-SVED 104 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc--C----CeEEEEeCCH---HHHHHHHHHHH----HcCCCceEEEe--C-CHHH
Confidence 35689999998874 33445543 2 2489998652 33444443333 3444 344432 2 2333
Q ss_pred CCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEE
Q 041667 473 LSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLV 526 (659)
Q Consensus 473 L~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlV 526 (659)
+.... -..-+.++ +...|||+.+ + ..+|+.+ +.|+|.-++++
T Consensus 105 ~~~~~--~~~~D~i~--~~~~l~~~~~-------~-~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 105 LAEKG--AKSFDVVT--CMEVLEHVPD-------P-QAFIRACAQLLKPGGILFF 147 (224)
T ss_pred hhcCC--CCCccEEE--ehhHHHhCCC-------H-HHHHHHHHHhcCCCcEEEE
Confidence 22111 01223333 3445677643 2 3466555 67799876655
No 66
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=36.28 E-value=3.1e+02 Score=28.02 Aligned_cols=48 Identities=15% Similarity=-0.059 Sum_probs=29.1
Q ss_pred hhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCC
Q 041667 373 AANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADG 435 (659)
Q Consensus 373 tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~ 435 (659)
-.|..+.+.+..- ...+.-.|+|.+.|.|. =+..||.+ | ..+|||+-.
T Consensus 21 ~p~~~L~~~~~~~-----~~~~~~rvL~~gCG~G~----da~~LA~~--G----~~V~avD~s 68 (218)
T PRK13255 21 EVNPLLQKYWPAL-----ALPAGSRVLVPLCGKSL----DMLWLAEQ--G----HEVLGVELS 68 (218)
T ss_pred CCCHHHHHHHHhh-----CCCCCCeEEEeCCCChH----hHHHHHhC--C----CeEEEEccC
Confidence 3566666655310 01233478999988883 34456664 4 689999975
No 67
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=34.79 E-value=1.4e+02 Score=33.97 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=43.8
Q ss_pred ceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEEEeccCCCCCCChHHHHHHHHHHHHHHHHHhhhccCCCc
Q 041667 484 ETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDH 563 (659)
Q Consensus 484 EaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtlVEqEan~Ns~~F~~RF~EAL~yYsAlFDSLdatl~rds 563 (659)
+.++||+.=+.+ ....++-....|...+|+.|+.+|.+- ...++.+=.+...| ....|+..++.-
T Consensus 173 ~~ilIdT~GWi~--------G~~g~elk~~li~~ikP~~Ii~l~~~~---~~~~l~~~~~~~~~----~~~~~~~~~~sR 237 (398)
T COG1341 173 DFILIDTDGWIK--------GWGGLELKRALIDAIKPDLIIALERAN---ELSPLLEGVESIVY----LKVPDAVAPRSR 237 (398)
T ss_pred CEEEEcCCCcee--------CchHHHHHHHHHhhcCCCEEEEecccc---ccchhhhcccCceE----EeccccccccCh
Confidence 355666655443 112355666778899999999987653 23333333344433 344445556666
Q ss_pred hhHHHH-HHHHhHHHh
Q 041667 564 SDRVKV-EEGLSRKLA 578 (659)
Q Consensus 564 ~eR~~v-E~~lgreI~ 578 (659)
.||... |+...+.+.
T Consensus 238 ~ER~~~R~e~~~ryf~ 253 (398)
T COG1341 238 EERKELREEKYRRYFE 253 (398)
T ss_pred hHHHHHHHHHHHHhcc
Confidence 666654 333444443
No 68
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=34.07 E-value=4.3e+02 Score=25.33 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=21.4
Q ss_pred EEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEE-EEec
Q 041667 487 AVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVT-LVEQ 528 (659)
Q Consensus 487 aVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVt-lVEq 528 (659)
+|-+.+.||+++| +..+|+.+ |-|+|.-.+ ++|-
T Consensus 47 ~v~~~~~l~~~~d--------~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 47 AVTMGYGLRNVVD--------RLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred EEEecchhhcCCC--------HHHHHHHHHHHcCcCeEEEEEEC
Confidence 3445678898854 34555555 788998655 4443
No 69
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=32.93 E-value=76 Score=33.76 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=18.6
Q ss_pred CCceeEEEecccCCCcchHHHHHHHHhCC
Q 041667 392 GSNKIHVIDFDIGQGGQYMNLFHALSARL 420 (659)
Q Consensus 392 G~~~VHIIDfdI~~G~QWpsLIqaLA~R~ 420 (659)
|++.|||||+ +.+ ++ .+|..+++-.
T Consensus 51 Ga~~lHvVDL--g~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 51 GVKGCHVIML--GPN-ND-DAAKEALHAY 75 (253)
T ss_pred CCCEEEEEEC--CCC-cH-HHHHHHHHhC
Confidence 8999999999 555 66 5666666543
No 70
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=32.37 E-value=3.1e+02 Score=28.79 Aligned_cols=61 Identities=28% Similarity=0.317 Sum_probs=41.1
Q ss_pred hhcCCCccchh-hhhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCC
Q 041667 361 YDFSPCFSLGF-MAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADG 435 (659)
Q Consensus 361 ~e~sP~~kFah-~tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~ 435 (659)
+...|--++|. |..|..|++.+.+... -.+.-+|+|+|.|.| .+...|+.+ + + ++|||+-+
T Consensus 12 ~~~~~~k~~gq~fl~~~~i~~~i~~~l~----~~~~~~VLEiG~G~G----~lt~~L~~~--~-~---~v~avE~d 73 (272)
T PRK00274 12 YGHRAKKSLGQNFLIDENILDKIVDAAG----PQPGDNVLEIGPGLG----ALTEPLLER--A-A---KVTAVEID 73 (272)
T ss_pred cCCCCCcccCcCcCCCHHHHHHHHHhcC----CCCcCeEEEeCCCcc----HHHHHHHHh--C-C---cEEEEECC
Confidence 34567777777 6677777776653211 123458999999988 466777776 3 2 79999976
No 71
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=31.79 E-value=1.8e+02 Score=30.84 Aligned_cols=107 Identities=22% Similarity=0.295 Sum_probs=64.9
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDL 473 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL 473 (659)
.---|+|+|.|-|.+ -+-|+.|=.+ -.||||+++ .+-|++. +...+...|..- .+.+.
T Consensus 30 ~~~~v~DLGCGpGns----TelL~~RwP~----A~i~GiDsS---~~Mla~A--------a~rlp~~~f~~a---Dl~~w 87 (257)
T COG4106 30 RPRRVVDLGCGPGNS----TELLARRWPD----AVITGIDSS---PAMLAKA--------AQRLPDATFEEA---DLRTW 87 (257)
T ss_pred ccceeeecCCCCCHH----HHHHHHhCCC----CeEeeccCC---HHHHHHH--------HHhCCCCceecc---cHhhc
Confidence 345689999999865 3456666432 579999986 2444433 334444555422 22233
Q ss_pred CccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEEEeccCCCCCC
Q 041667 474 SRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTA 535 (659)
Q Consensus 474 ~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtlVEqEan~Ns~ 535 (659)
+++ .+-..|.-|.+ ||-|||-. +.|=+.+-.|.|.-|.-|---.|+..+
T Consensus 88 ~p~----~~~dllfaNAv--lqWlpdH~-------~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 88 KPE----QPTDLLFANAV--LQWLPDHP-------ELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred CCC----Cccchhhhhhh--hhhccccH-------HHHHHHHHhhCCCceEEEECCCccCch
Confidence 322 23345555665 45677642 567788899999999988665665544
No 72
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=31.73 E-value=2.1e+02 Score=28.23 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=55.6
Q ss_pred eeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCC
Q 041667 395 KIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLS 474 (659)
Q Consensus 395 ~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~ 474 (659)
.--|+|+|.|.|. ++-+||.+. | ...++||+... ..++.+.+++ +..|+. ..+.+.. .+.++.
T Consensus 17 ~~~ilDiGcG~G~----~~~~la~~~---p-~~~v~gvD~~~---~~l~~a~~~~----~~~~l~-ni~~i~~-d~~~~~ 79 (194)
T TIGR00091 17 APLHLEIGCGKGR----FLIDMAKQN---P-DKNFLGIEIHT---PIVLAANNKA----NKLGLK-NLHVLCG-DANELL 79 (194)
T ss_pred CceEEEeCCCccH----HHHHHHHhC---C-CCCEEEEEeeH---HHHHHHHHHH----HHhCCC-CEEEEcc-CHHHHH
Confidence 3479999998874 455666653 2 35899999752 4454444443 344553 2334444 333332
Q ss_pred ccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEE
Q 041667 475 RDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLV 526 (659)
Q Consensus 475 ~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlV 526 (659)
...+.-..=+.+++|+..--++ .......-....||+.+ +.|+|.-.+.+
T Consensus 80 ~~~~~~~~~d~v~~~~pdpw~k--~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 80 DKFFPDGSLSKVFLNFPDPWPK--KRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred HhhCCCCceeEEEEECCCcCCC--CCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 1111101113555554321110 00000000114677765 67899987765
No 73
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=31.60 E-value=2.8e+02 Score=24.57 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=53.5
Q ss_pred hhHHHHHHHHhhcccCCCCCCceeEEEecccCCCc--chHHHHHHHHhCC-----------CCC-CCeEEEEEecCCCCC
Q 041667 373 AANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGG--QYMNLFHALSARL-----------NGK-PAIVKVTAVADGTAS 438 (659)
Q Consensus 373 tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~--QWpsLIqaLA~R~-----------~G~-Pp~LRITgI~~~~~~ 438 (659)
..|+.+|++++.+++ .-.+.|.|||=+.+.. +.-.+++.|.... .|. +-.|+|+-...+.
T Consensus 4 ~~n~~vl~~L~~~Gd----dl~~~r~ieh~~~f~~~~~~~~f~~~~~~~g~~v~~~~~~~~d~~~~~~~~~~~~~~~~-- 77 (104)
T PF06877_consen 4 IENREVLEALEEDGD----DLSKPRPIEHWFYFEDEEDAEKFAEELEKLGYEVESAEEDEEDGDGPYCLDISREMVLD-- 77 (104)
T ss_dssp HHHHHHHHHHHHHT------TTS-EEEEEEEEES-HHHHHHHHHHHHHHS---B----B-SS-SSBEEEEEEEEE-S---
T ss_pred HHHHHHHHHHHhcCC----CCCCCeEEEEEEEeCCHHHHHHHHHHHHHCCCEEEEeecccCCCCceEEEEEEEecCCC--
Confidence 579999999998744 4568999999887655 6667777766531 121 2245665555542
Q ss_pred HHHHHHHHHHHHHHHHHcCce
Q 041667 439 EEKLKAVRDKLSQVAERVGVC 459 (659)
Q Consensus 439 ~~~L~~tG~rL~~fAeslgVp 459 (659)
...+...-..|.++|+.+|..
T Consensus 78 ~~~I~~~~~~l~~lA~~~~g~ 98 (104)
T PF06877_consen 78 YEDINAITQELEDLAKEFGGE 98 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHT-E
T ss_pred HHHHHHHHHHHHHHHHHhCcE
Confidence 467888999999999999875
No 74
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=31.09 E-value=3.7e+02 Score=29.78 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=52.7
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCC
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDL 473 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL 473 (659)
...+|+|+|.|.|.- ...|+.+-++ .++|+|+.. +..++.+.++. +.-++. | +.. .++++
T Consensus 113 ~~~~VLDLGcGtG~~----~l~La~~~~~----~~VtgVD~S---~~mL~~A~~k~----~~~~i~--~--i~g-D~e~l 172 (340)
T PLN02490 113 RNLKVVDVGGGTGFT----TLGIVKHVDA----KNVTILDQS---PHQLAKAKQKE----PLKECK--I--IEG-DAEDL 172 (340)
T ss_pred CCCEEEEEecCCcHH----HHHHHHHCCC----CEEEEEECC---HHHHHHHHHhh----hccCCe--E--Eec-cHHhC
Confidence 346899999998863 3344444322 479999974 24444444432 112332 2 333 44443
Q ss_pred CccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHH-HHccCCcEEEEE
Q 041667 474 SRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRR-VKGLSPSVVTLV 526 (659)
Q Consensus 474 ~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~-VrsL~PkVVtlV 526 (659)
... -..=+.++.+ ..|||+++. +.+|+. .+.|+|.-.+++
T Consensus 173 p~~---~~sFDvVIs~--~~L~~~~d~--------~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 173 PFP---TDYADRYVSA--GSIEYWPDP--------QRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred CCC---CCceeEEEEc--ChhhhCCCH--------HHHHHHHHHhcCCCcEEEE
Confidence 211 1112344443 456777642 234554 578899877644
No 75
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=30.54 E-value=1.2e+02 Score=32.35 Aligned_cols=54 Identities=30% Similarity=0.361 Sum_probs=37.4
Q ss_pred ceeEEEecccCCCcchHHHHHHH------HhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEE
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHAL------SARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNV 464 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaL------A~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~ 464 (659)
+.|||||+.=+ |+-|-.|+ +..+ | +|-.|+.. +...+-+.++|+++|.++-.+-
T Consensus 36 ngihIIDL~kT----~~~l~~A~~~v~~~~~~~-g-----~ILfVgTK-------~~a~~~V~~~A~r~g~~yV~~R 95 (252)
T COG0052 36 NGIHIIDLQKT----LERLREAYKFLRRIAANG-G-----KILFVGTK-------KQAQEPVKEFAERTGAYYVNGR 95 (252)
T ss_pred CCcEEEEHHHH----HHHHHHHHHHHHHHHcCC-C-----EEEEEech-------HHHHHHHHHHHHHhCCceecCc
Confidence 67999999754 66655554 4332 2 67777764 3356678899999999876553
No 76
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=29.43 E-value=1.3e+02 Score=28.36 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=26.7
Q ss_pred CCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCC
Q 041667 392 GSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGT 436 (659)
Q Consensus 392 G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~ 436 (659)
..+..+|||||-|.|. |=..||..-....+.++|++|+...
T Consensus 23 ~~~~~~vvD~GsG~Gy----Ls~~La~~l~~~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGY----LSRALAHLLCNSSPNLRVLGIDCNE 63 (141)
T ss_pred cCCCCEEEEeCCChhH----HHHHHHHHHHhcCCCCeEEEEECCc
Confidence 4678999999999984 3344444100001348999999763
No 77
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=28.31 E-value=7.3e+02 Score=26.23 Aligned_cols=116 Identities=19% Similarity=0.159 Sum_probs=62.1
Q ss_pred hhhhhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHH
Q 041667 370 GFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKL 449 (659)
Q Consensus 370 ah~tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL 449 (659)
|+..+.+-++++++.- -.+.-.|+|+|.|.|. |..+++.+ | . -++++|+-. +..++.+.+++
T Consensus 141 G~h~tt~l~l~~l~~~------~~~g~~VLDvGcGsG~----lai~aa~~--g-~--~~V~avDid---~~al~~a~~n~ 202 (288)
T TIGR00406 141 GTHPTTSLCLEWLEDL------DLKDKNVIDVGCGSGI----LSIAALKL--G-A--AKVVGIDID---PLAVESARKNA 202 (288)
T ss_pred CCCHHHHHHHHHHHhh------cCCCCEEEEeCCChhH----HHHHHHHc--C-C--CeEEEEECC---HHHHHHHHHHH
Confidence 4566677777777632 1233579999999884 33455543 3 2 389999975 24555555443
Q ss_pred HHHHHHcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHH-HHccCCcEEEEE
Q 041667 450 SQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRR-VKGLSPSVVTLV 526 (659)
Q Consensus 450 ~~fAeslgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~-VrsL~PkVVtlV 526 (659)
+..++...+..+.. ....... ..=+.|+.|... + ....++.. .+.|+|.-.+++
T Consensus 203 ----~~n~~~~~~~~~~~-~~~~~~~-----~~fDlVvan~~~--~-----------~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 203 ----ELNQVSDRLQVKLI-YLEQPIE-----GKADVIVANILA--E-----------VIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred ----HHcCCCcceEEEec-ccccccC-----CCceEEEEecCH--H-----------HHHHHHHHHHHHcCCCcEEEE
Confidence 34455544443333 1111110 112455555421 1 22345544 478899866655
No 78
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=27.45 E-value=7.5e+02 Score=27.18 Aligned_cols=117 Identities=20% Similarity=0.217 Sum_probs=64.9
Q ss_pred hHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041667 374 ANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVA 453 (659)
Q Consensus 374 ANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fA 453 (659)
....+++.+... ..=+|+|||.|.|. +-..|+.+. | ..++|+|+.+ ...++.+.+++.+
T Consensus 184 gt~lLl~~l~~~--------~~g~VLDlGCG~G~----ls~~la~~~---p-~~~v~~vDis---~~Al~~A~~nl~~-- 242 (342)
T PRK09489 184 GSQLLLSTLTPH--------TKGKVLDVGCGAGV----LSAVLARHS---P-KIRLTLSDVS---AAALESSRATLAA-- 242 (342)
T ss_pred HHHHHHHhcccc--------CCCeEEEeccCcCH----HHHHHHHhC---C-CCEEEEEECC---HHHHHHHHHHHHH--
Confidence 345667767531 12269999999886 555666652 2 3689999976 3556666555443
Q ss_pred HHcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHH-HHccCCcEEEEE
Q 041667 454 ERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRR-VKGLSPSVVTLV 526 (659)
Q Consensus 454 eslgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~-VrsL~PkVVtlV 526 (659)
.++..+|.. .+-.+.+. ..=+.++.|-.| |...+.. ......|++. .+.|+|.-..++
T Consensus 243 --n~l~~~~~~--~D~~~~~~------~~fDlIvsNPPF--H~g~~~~---~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 243 --NGLEGEVFA--SNVFSDIK------GRFDMIISNPPF--HDGIQTS---LDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred --cCCCCEEEE--cccccccC------CCccEEEECCCc--cCCcccc---HHHHHHHHHHHHHhcCcCCEEEE
Confidence 455555432 21122111 223677888765 4322211 1123456655 467899866643
No 79
>PRK14851 hypothetical protein; Provisional
Probab=27.21 E-value=1.9e+02 Score=34.98 Aligned_cols=129 Identities=19% Similarity=0.239 Sum_probs=70.0
Q ss_pred HHHHHHHhhcccCCCCCCceeEEEecccCC----Ccch----HH--------HHHHHHhCCCCCCCeEEEEEecCCCCC-
Q 041667 376 LAILEATMEQTTGNTIGSNKIHVIDFDIGQ----GGQY----MN--------LFHALSARLNGKPAIVKVTAVADGTAS- 438 (659)
Q Consensus 376 qAILEA~~~e~~~~~~G~~~VHIIDfdI~~----G~QW----ps--------LIqaLA~R~~G~Pp~LRITgI~~~~~~- 438 (659)
..+++.+... |..+++|||||+.. -.|- .. +-+.|.... | .++|+.+...-..
T Consensus 56 s~va~~Lar~------GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~in---P-~~~I~~~~~~i~~~ 125 (679)
T PRK14851 56 GVHLITMVRT------GIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSIN---P-FLEITPFPAGINAD 125 (679)
T ss_pred HHHHHHHHHh------CCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhC---C-CCeEEEEecCCChH
Confidence 3455555543 88999999999521 1122 11 122232222 3 5899988754322
Q ss_pred --HHHH--------------HHHHHHHHHHHHHcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCC
Q 041667 439 --EEKL--------------KAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESV 502 (659)
Q Consensus 439 --~~~L--------------~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desv 502 (659)
.+.+ -++...|.+.|...||||-+-.+.. .....+.+.++ ....-|-|.++. +
T Consensus 126 n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G-----~~g~~~~~~p~-~~~~~~~~~~~~---~-- 194 (679)
T PRK14851 126 NMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG-----YSSAMLVFTPQ-GMGFDDYFNIGG---K-- 194 (679)
T ss_pred HHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc-----ccceEEEEcCC-CCCHhHhccCCC---C--
Confidence 1111 2456788889999999987765543 11111112222 122223344421 1
Q ss_pred CCCChHHHHHHHHHccCCcEEEEEe
Q 041667 503 STENPRDELLRRVKGLSPSVVTLVE 527 (659)
Q Consensus 503 s~~npRd~fL~~VrsL~PkVVtlVE 527 (659)
....+++|+..-.|.|+-+-...
T Consensus 195 --~~~~~~~~~~~~g~~p~~~~~~~ 217 (679)
T PRK14851 195 --MPEEQKYLRFAMGLAPRPTHIKY 217 (679)
T ss_pred --CChHHHHHHHHhcCCCcchhhcc
Confidence 11246899999999998776543
No 80
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=26.44 E-value=6.6e+02 Score=25.05 Aligned_cols=84 Identities=18% Similarity=0.100 Sum_probs=41.2
Q ss_pred eeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCC
Q 041667 395 KIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLS 474 (659)
Q Consensus 395 ~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~ 474 (659)
.-+|+|+|.|.|..=..|.+.+ . ++ -++++|+.. +..++.+.+++. ..|+.=..+.+.. +..+.-
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~-~-~~-----g~V~~iD~~---~~~~~~a~~~l~----~~~~~~~v~~~~~-d~~~~~ 137 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAI-E-RR-----GKVYTVEIV---KELAIYAAQNIE----RLGYWGVVEVYHG-DGKRGL 137 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhc-C-CC-----CEEEEEeCC---HHHHHHHHHHHH----HcCCCCcEEEEEC-CcccCC
Confidence 3478998888776332232222 1 11 279999975 244555555553 3454312233333 222211
Q ss_pred ccccCCCCCceEEEeeecccccCC
Q 041667 475 RDSLGCEPDETLAVNFAFKLFRMP 498 (659)
Q Consensus 475 ~~~L~i~~gEaLaVN~~f~Lh~L~ 498 (659)
. ...+=+++++++. +++++
T Consensus 138 ~---~~~~fD~Ii~~~~--~~~~~ 156 (205)
T PRK13944 138 E---KHAPFDAIIVTAA--ASTIP 156 (205)
T ss_pred c---cCCCccEEEEccC--cchhh
Confidence 1 1134467777765 34543
No 81
>KOG4450 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.95 E-value=42 Score=33.34 Aligned_cols=15 Identities=53% Similarity=0.725 Sum_probs=12.4
Q ss_pred ccccHHHHHHHHHHHH
Q 041667 200 GQESEKKMLNRLQELE 215 (659)
Q Consensus 200 ~~~~~~~~~~~L~eLe 215 (659)
|..++ .|+.+|.+||
T Consensus 73 Y~Vd~-rmL~~LD~lE 87 (168)
T KOG4450|consen 73 YEVDE-RMLSRLDELE 87 (168)
T ss_pred EEeCH-HHHhhhHhhc
Confidence 55555 9999999999
No 82
>PRK14968 putative methyltransferase; Provisional
Probab=25.83 E-value=5.7e+02 Score=24.15 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=27.6
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHH
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKL 449 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL 449 (659)
-.|+|+|.|.|. +...|+.+ | .+||+++.. +..++.+.+++
T Consensus 25 ~~vLd~G~G~G~----~~~~l~~~--~----~~v~~~D~s---~~~~~~a~~~~ 65 (188)
T PRK14968 25 DRVLEVGTGSGI----VAIVAAKN--G----KKVVGVDIN---PYAVECAKCNA 65 (188)
T ss_pred CEEEEEccccCH----HHHHHHhh--c----ceEEEEECC---HHHHHHHHHHH
Confidence 469999999998 56666665 2 479999965 24455454443
No 83
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.54 E-value=51 Score=36.35 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=24.5
Q ss_pred ceEEEeeecccccCCCCCCCCCChHHH-HHHHHHccCCcEEEEE
Q 041667 484 ETLAVNFAFKLFRMPDESVSTENPRDE-LLRRVKGLSPSVVTLV 526 (659)
Q Consensus 484 EaLaVN~~f~Lh~L~desvs~~npRd~-fL~~VrsL~PkVVtlV 526 (659)
|.-.||..+ .+...|++. ....+. ++..++..+|++|++.
T Consensus 206 ~g~~vNiPL-p~g~~d~~y--~~a~~~~v~~~~~~f~Pdlvivs 246 (340)
T COG0123 206 EGNNVNIPL-PPGTGDDSY--LEALEEIVLPLLEEFKPDLVIVS 246 (340)
T ss_pred ccceEeeec-CCCCCcHHH--HHHHHHHHHHHHHhcCCCEEEEe
Confidence 667888776 344434322 112233 5667888999999876
No 84
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=24.97 E-value=1.4e+02 Score=29.57 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=45.4
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHhhccCC
Q 041667 284 SKQTVIEAA-TAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNP 338 (659)
Q Consensus 284 ~~qLLl~CA-eAVa~gd~~~A~~iL~~L~~~aSp~Gd~~QRLAayFaeAL~aRl~~ 338 (659)
+..+|+.|. .++..++.+.|..++..|..+..|..+-..|+...|.+|+..=..+
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 445666655 6678889999999999999999888888899999999999765544
No 85
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=24.96 E-value=7e+02 Score=24.88 Aligned_cols=78 Identities=24% Similarity=0.301 Sum_probs=42.5
Q ss_pred eeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCC
Q 041667 395 KIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLS 474 (659)
Q Consensus 395 ~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~ 474 (659)
..+|+|+|.|.| .+...|+.+. | ..++|||+... ..++.+.+ .++..+++ ..+.+.. .+.+.
T Consensus 88 ~~~ilDig~G~G----~~~~~l~~~~---~-~~~v~~iD~~~---~~~~~a~~----~~~~~~~~-~~~~~~~-d~~~~- 149 (251)
T TIGR03534 88 PLRVLDLGTGSG----AIALALAKER---P-DARVTAVDISP---EALAVARK----NAARLGLD-NVTFLQS-DWFEP- 149 (251)
T ss_pred CCeEEEEeCcHh----HHHHHHHHHC---C-CCEEEEEECCH---HHHHHHHH----HHHHcCCC-eEEEEEC-chhcc-
Confidence 458999999988 4455555542 2 36899999652 33444433 34455665 2333433 22221
Q ss_pred ccccCCCCCceEEEeeecc
Q 041667 475 RDSLGCEPDETLAVNFAFK 493 (659)
Q Consensus 475 ~~~L~i~~gEaLaVN~~f~ 493 (659)
+.-..-+.|+.|..+.
T Consensus 150 ---~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 150 ---LPGGKFDLIVSNPPYI 165 (251)
T ss_pred ---CcCCceeEEEECCCCC
Confidence 1112335777776654
No 86
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=24.59 E-value=7.5e+02 Score=25.07 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=57.8
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCc
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSR 475 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~ 475 (659)
-.|+|++.|.|. . -|.+|+.. . -+||+|+-. +..++.+.+. ++.+|+. ....+.. ++.+.-.
T Consensus 55 ~~vLDl~~GsG~--l-~l~~lsr~----a--~~V~~vE~~---~~a~~~a~~N----l~~~~~~-~v~~~~~-D~~~~l~ 116 (199)
T PRK10909 55 ARCLDCFAGSGA--L-GLEALSRY----A--AGATLLEMD---RAVAQQLIKN----LATLKAG-NARVVNT-NALSFLA 116 (199)
T ss_pred CEEEEcCCCccH--H-HHHHHHcC----C--CEEEEEECC---HHHHHHHHHH----HHHhCCC-cEEEEEc-hHHHHHh
Confidence 478999988882 2 23455532 1 389999865 2334444333 3444543 2333333 2222111
Q ss_pred cccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHc---cCCcEEEEEeccCCCC
Q 041667 476 DSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKG---LSPSVVTLVEQETNTN 533 (659)
Q Consensus 476 ~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~Vrs---L~PkVVtlVEqEan~N 533 (659)
. .. .+=+.|++|=.|. .+-...+++.|.. |.|+-+++||.....+
T Consensus 117 ~-~~-~~fDlV~~DPPy~-----------~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 117 Q-PG-TPHNVVFVDPPFR-----------KGLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred h-cC-CCceEEEECCCCC-----------CChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 0 11 1235777775542 1123467777766 6999999999776543
No 87
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=23.79 E-value=2.3e+02 Score=30.21 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=34.3
Q ss_pred CceeEEEecccCCCcchHHHHHHH---HhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcee
Q 041667 393 SNKIHVIDFDIGQGGQYMNLFHAL---SARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCL 460 (659)
Q Consensus 393 ~~~VHIIDfdI~~G~QWpsLIqaL---A~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpF 460 (659)
.+.|||||++-+ |..|..|+ +.-.. |. +|-.|+... ...+-+.+||+.+|-.+
T Consensus 43 ~dGi~IIdL~kT----~~~L~~Aa~~i~~i~~--~~--~Il~Vstr~-------~~~~~V~k~A~~tg~~~ 98 (249)
T PTZ00254 43 KEGVHIINLAKT----WEKLKLAARVIAAIEN--PA--DVVVVSSRP-------YGQRAVLKFAQYTGASA 98 (249)
T ss_pred CCCCEEEcHHHH----HHHHHHHHHHHHHHhC--CC--cEEEEEcCH-------HHHHHHHHHHHHhCCeE
Confidence 377999999976 77777765 11111 22 355666542 13456778999999876
No 88
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=22.71 E-value=5.6e+02 Score=27.43 Aligned_cols=98 Identities=16% Similarity=0.256 Sum_probs=56.3
Q ss_pred eEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCce-eEEEEEecCCCCCCC
Q 041667 396 IHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVC-LRFNVAICLKFDDLS 474 (659)
Q Consensus 396 VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVp-FEF~~V~~~~ledL~ 474 (659)
-+|+|++.|.|. +--.||.+ | -+++||+-.. ..++.+.+ -|+..|+. .+|.. . +++++.
T Consensus 175 ~~VLDl~cG~G~----~sl~la~~--~----~~V~gvD~s~---~av~~A~~----n~~~~~l~~v~~~~--~-D~~~~~ 234 (315)
T PRK03522 175 RSMWDLFCGVGG----FGLHCATP--G----MQLTGIEISA---EAIACAKQ----SAAELGLTNVQFQA--L-DSTQFA 234 (315)
T ss_pred CEEEEccCCCCH----HHHHHHhc--C----CEEEEEeCCH---HHHHHHHH----HHHHcCCCceEEEE--c-CHHHHH
Confidence 579999999885 34455553 2 2799999752 44554433 34556663 55543 3 333332
Q ss_pred ccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEEEe
Q 041667 475 RDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVE 527 (659)
Q Consensus 475 ~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtlVE 527 (659)
.. . ...-+.|++|=. -.. --+.+++.+..++|+-++.|.
T Consensus 235 ~~-~-~~~~D~Vv~dPP-------r~G-----~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 235 TA-Q-GEVPDLVLVNPP-------RRG-----IGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred Hh-c-CCCCeEEEECCC-------CCC-----ccHHHHHHHHHcCCCeEEEEE
Confidence 11 0 012357777621 111 124677888899999888763
No 89
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=22.67 E-value=6e+02 Score=28.06 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=54.9
Q ss_pred EEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCce-eEEEEEecCCCCCCCc
Q 041667 397 HVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVC-LRFNVAICLKFDDLSR 475 (659)
Q Consensus 397 HIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVp-FEF~~V~~~~ledL~~ 475 (659)
+|+|++.|.| .+--+||.+ | -+++||+-.. ..++.+.+. |+..|+. .+| +.. +++++..
T Consensus 236 ~vLDL~cG~G----~~~l~la~~--~----~~v~~vE~~~---~av~~a~~N----~~~~~~~~~~~--~~~-d~~~~~~ 295 (374)
T TIGR02085 236 QMWDLFCGVG----GFGLHCAGP--D----TQLTGIEIES---EAIACAQQS----AQMLGLDNLSF--AAL-DSAKFAT 295 (374)
T ss_pred EEEEccCCcc----HHHHHHhhc--C----CeEEEEECCH---HHHHHHHHH----HHHcCCCcEEE--EEC-CHHHHHH
Confidence 6899988877 233344533 2 3799999752 445555443 4455663 444 333 3333221
Q ss_pred cccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHHHccCCcEEEEEe
Q 041667 476 DSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVE 527 (659)
Q Consensus 476 ~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~VrsL~PkVVtlVE 527 (659)
. +. ..-+.|++|=.. ...-..++..+..++|+-++.|+
T Consensus 296 ~-~~-~~~D~vi~DPPr------------~G~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 296 A-QM-SAPELVLVNPPR------------RGIGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred h-cC-CCCCEEEECCCC------------CCCcHHHHHHHHhcCCCeEEEEE
Confidence 1 11 223677777331 11124788888899998888775
No 90
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=21.99 E-value=57 Score=28.42 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCCCC
Q 041667 208 LNRLQELEKQLLDDEEE 224 (659)
Q Consensus 208 ~~~L~eLe~~Ll~d~~e 224 (659)
+.+|+|||++|..||-+
T Consensus 8 ~r~L~eiEr~L~~~DP~ 24 (82)
T PF11239_consen 8 QRRLEEIERQLRADDPR 24 (82)
T ss_pred HHHHHHHHHHHHhcCcH
Confidence 34788999999977653
No 91
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=21.72 E-value=1.3e+02 Score=31.00 Aligned_cols=28 Identities=29% Similarity=0.627 Sum_probs=21.7
Q ss_pred CCceeEEEecccC--CCcchHHHHHHHHhCC
Q 041667 392 GSNKIHVIDFDIG--QGGQYMNLFHALSARL 420 (659)
Q Consensus 392 G~~~VHIIDfdI~--~G~QWpsLIqaLA~R~ 420 (659)
|.+.|||||+|-. .+.+. .+|..++..-
T Consensus 45 g~~~l~ivDLd~~~g~~~n~-~~i~~i~~~~ 74 (241)
T PRK14024 45 GAEWIHLVDLDAAFGRGSNR-ELLAEVVGKL 74 (241)
T ss_pred CCCEEEEEeccccCCCCccH-HHHHHHHHHc
Confidence 8999999999854 33355 8888888864
No 92
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=21.50 E-value=8.8e+02 Score=24.93 Aligned_cols=54 Identities=26% Similarity=0.303 Sum_probs=33.7
Q ss_pred cchh-hhhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCC
Q 041667 368 SLGF-MAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADG 435 (659)
Q Consensus 368 kFah-~tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~ 435 (659)
++|. |..|..|++.+.+... ..+.=.|+|+|.|.|. |...|+.+. + ++++|+.+
T Consensus 6 ~~gq~fl~d~~i~~~i~~~~~----~~~~~~VLEiG~G~G~----lt~~L~~~~---~---~v~~iE~d 60 (253)
T TIGR00755 6 SLGQNFLIDESVIQKIVEAAN----VLEGDVVLEIGPGLGA----LTEPLLKRA---K---KVTAIEID 60 (253)
T ss_pred CCCCccCCCHHHHHHHHHhcC----CCCcCEEEEeCCCCCH----HHHHHHHhC---C---cEEEEECC
Confidence 3443 4456666665543211 2234579999999886 677777763 2 39999865
No 93
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=21.40 E-value=9.8e+02 Score=25.52 Aligned_cols=120 Identities=22% Similarity=0.287 Sum_probs=69.0
Q ss_pred CceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEE-EEecCCCC
Q 041667 393 SNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFN-VAICLKFD 471 (659)
Q Consensus 393 ~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~-~V~~~~le 471 (659)
..++-|+..|+|.|.-.+-+ +- .|--+||.|+++ +.++++.. ..+|+. .|.+|. .|.. ..|
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy-------~~--~p~~svt~lDpn----~~mee~~~--ks~~E~--k~~~~~~fvva-~ge 136 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFY-------PW--KPINSVTCLDPN----EKMEEIAD--KSAAEK--KPLQVERFVVA-DGE 136 (252)
T ss_pred cCccceEEecccCCCCcccc-------cC--CCCceEEEeCCc----HHHHHHHH--HHHhhc--cCcceEEEEee-chh
Confidence 45789999999988532211 10 145899999986 34555433 344554 455554 3333 455
Q ss_pred CCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEE-EEeccCCCCCCChHHHHHHH
Q 041667 472 DLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVT-LVEQETNTNTAPFMARVNEA 544 (659)
Q Consensus 472 dL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVt-lVEqEan~Ns~~F~~RF~EA 544 (659)
++. .+.++-.=+|-|.|-|-.. ++|++ .|+-+ |-|+|.-.+ +.|.-+.- -.|..|+..+
T Consensus 137 ~l~----~l~d~s~DtVV~TlvLCSv-------e~~~k-~L~e~~rlLRpgG~iifiEHva~~--y~~~n~i~q~ 197 (252)
T KOG4300|consen 137 NLP----QLADGSYDTVVCTLVLCSV-------EDPVK-QLNEVRRLLRPGGRIIFIEHVAGE--YGFWNRILQQ 197 (252)
T ss_pred cCc----ccccCCeeeEEEEEEEecc-------CCHHH-HHHHHHHhcCCCcEEEEEeccccc--chHHHHHHHH
Confidence 554 2344444456677776632 45664 55555 557999776 55665532 3566776543
No 94
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=21.25 E-value=5.1e+02 Score=25.82 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=55.5
Q ss_pred ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCc-eeEEEEEecCCC-C
Q 041667 394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGV-CLRFNVAICLKF-D 471 (659)
Q Consensus 394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgV-pFEF~~V~~~~l-e 471 (659)
+.-.|+|+|.|.|.-...| +.+. | ..+||||+... ..++.+.+++. ..++ .++| +.. .+ +
T Consensus 40 ~~~~VLDiGcGtG~~~~~l----a~~~---p-~~~v~gVD~s~---~~i~~a~~~~~----~~~~~~v~~--~~~-d~~~ 101 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEM----AKAN---P-DINFIGIEVHE---PGVGKALKKIE----EEGLTNLRL--LCG-DAVE 101 (202)
T ss_pred CCCeEEEEccCCCHHHHHH----HHHC---C-CccEEEEEech---HHHHHHHHHHH----HcCCCCEEE--Eec-CHHH
Confidence 4467999999998654444 4432 2 25899999763 44544444333 3344 2333 333 33 3
Q ss_pred CCCccccCCCCC--ceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEE
Q 041667 472 DLSRDSLGCEPD--ETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLV 526 (659)
Q Consensus 472 dL~~~~L~i~~g--EaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlV 526 (659)
.+... +.++ +.+++|+....++.+... ..-....||+.+ +-|+|.-++++
T Consensus 102 ~l~~~---~~~~~~D~V~~~~~~p~~~~~~~~--~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 102 VLLDM---FPDGSLDRIYLNFPDPWPKKRHHK--RRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HHHHH---cCccccceEEEECCCCCCCccccc--cccCCHHHHHHHHHHcCCCCEEEE
Confidence 33210 1122 355555543222111100 000135677776 58899876654
No 95
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=21.08 E-value=2.1e+02 Score=29.61 Aligned_cols=71 Identities=15% Similarity=0.066 Sum_probs=44.4
Q ss_pred ccchhhhhHHHHHHHHhhcccCCCCCC--ceeEEEecccCCCcchHHHHHHH---HhCCCCCCCeEEEEEecCCCCCHHH
Q 041667 367 FSLGFMAANLAILEATMEQTTGNTIGS--NKIHVIDFDIGQGGQYMNLFHAL---SARLNGKPAIVKVTAVADGTASEEK 441 (659)
Q Consensus 367 ~kFah~tANqAILEA~~~e~~~~~~G~--~~VHIIDfdI~~G~QWpsLIqaL---A~R~~G~Pp~LRITgI~~~~~~~~~ 441 (659)
..|||-+.|...-.-+- |. +.+||||++-+ |..|..|+ +...+| +|-.|+...
T Consensus 20 ~H~Gh~~~np~Mk~yIy--------g~r~~gi~IIdL~kT----~~~L~~A~~~i~~~~~~-----~ILfVgTk~----- 77 (204)
T PRK04020 20 VHIGTQQKTKDMERFIY--------RVRPDGLYVLDVRKT----DERIRIAAKFLSRYEPE-----KILVVSSRQ----- 77 (204)
T ss_pred eEcCCCcCCCCCcccEe--------eecCCCCEEEcHHHH----HHHHHHHHHHHHHhcCC-----eEEEEeCCH-----
Confidence 35666665554333332 33 46999999876 67776664 333222 677787652
Q ss_pred HHHHHHHHHHHHHHcCceeE
Q 041667 442 LKAVRDKLSQVAERVGVCLR 461 (659)
Q Consensus 442 L~~tG~rL~~fAeslgVpFE 461 (659)
...+-..++|+++|-.+-
T Consensus 78 --~~~~~v~k~A~~~g~~~v 95 (204)
T PRK04020 78 --YGQKPVQKFAEVVGAKAI 95 (204)
T ss_pred --HHHHHHHHHHHHhCCeee
Confidence 134567889999998753
No 96
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=20.69 E-value=3e+02 Score=23.97 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=25.9
Q ss_pred EEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHH
Q 041667 397 HVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDK 448 (659)
Q Consensus 397 HIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~r 448 (659)
+|+|+|.|.|.. ...|+.+. |. .++|+|+... ..++.+.++
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~-~~v~~vD~s~---~~~~~a~~~ 62 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PN-GRVYAIERNP---EALRLIERN 62 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CC-ceEEEEcCCH---HHHHHHHHH
Confidence 899999988753 44445542 22 6899999752 344444443
No 97
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=20.40 E-value=1.7e+02 Score=29.86 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=30.7
Q ss_pred eEEEecccCCCc---chHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041667 396 IHVIDFDIGQGG---QYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVA 453 (659)
Q Consensus 396 VHIIDfdI~~G~---QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fA 453 (659)
=|++|+|.|.|. +|. + + .|..|+++|+.. ++.++.+.+.+.+|.
T Consensus 36 ~~l~DIGaGtGsi~iE~a-~----~------~p~~~v~AIe~~---~~a~~~~~~N~~~fg 82 (187)
T COG2242 36 DRLWDIGAGTGSITIEWA-L----A------GPSGRVIAIERD---EEALELIERNAARFG 82 (187)
T ss_pred CEEEEeCCCccHHHHHHH-H----h------CCCceEEEEecC---HHHHHHHHHHHHHhC
Confidence 499999999886 554 1 1 235799999975 356777777665554
No 98
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=20.13 E-value=4.1e+02 Score=24.46 Aligned_cols=97 Identities=16% Similarity=0.030 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHcCceeEEEEEecC--CCCCCCccccC-----CCCCc--eEEEeeecccccCCCCCCCCCChHHHH
Q 041667 441 KLKAVRDKLSQVAERVGVCLRFNVAICL--KFDDLSRDSLG-----CEPDE--TLAVNFAFKLFRMPDESVSTENPRDEL 511 (659)
Q Consensus 441 ~L~~tG~rL~~fAeslgVpFEF~~V~~~--~ledL~~~~L~-----i~~gE--aLaVN~~f~Lh~L~desvs~~npRd~f 511 (659)
.++.=-+.|.+||+..|.++. ...... +-....++.|. ++.|+ .|+|--.-+|-+-+. ....+
T Consensus 16 s~~~Q~~~~~~~a~~~g~~i~-~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~-------~~~~~ 87 (148)
T smart00857 16 SLERQLEALRAYAKANGWEVV-RIYEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLDRLGRSLR-------DLLAL 87 (148)
T ss_pred CHHHHHHHHHHHHHHCCCEEE-EEEEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccchhhCcHH-------HHHHH
Confidence 355556678999999998763 221110 11222333222 46677 777765544443211 12457
Q ss_pred HHHHHccCCcEEEEEeccCCCCCCChHHHHHHHHHH
Q 041667 512 LRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAY 547 (659)
Q Consensus 512 L~~VrsL~PkVVtlVEqEan~Ns~~F~~RF~EAL~y 547 (659)
+..++..+=+|+++-|...+.+ ....++...+..
T Consensus 88 ~~~l~~~gi~l~~~~~~~~~~~--~~~~~~~~~i~~ 121 (148)
T smart00857 88 LELLEKKGVRLVSVTEGIEDTS--TPAGRLMLDILA 121 (148)
T ss_pred HHHHHHCCCEEEECcCCCCCCC--CHHHHHHHHHHH
Confidence 7888888866666544433433 333444444433
Done!