BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041668
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 67 SCNVSGGKWIWDNKTYPVYTEESCPYLSNQTCC----QRNGRPDSFHQKWRWQPDGCNLP 122
+CN++ + D+K Y V T + PY T Q G+ +KW W+ +GC P
Sbjct: 202 NCNLTQIGGLIDSKGYGVGTPKGSPYRDKITIAILQLQEEGKLHMMKEKW-WRGNGCPEP 260
>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To
Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane
Length = 235
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 34 KSNDRQIFQFYSEPEVYRQRRPVFASSKDQI---GESCNVSG-GKWIWDNKTYPVYTEES 89
K+ND + + +P+ ++Q+ G C+++G G I+ T V E
Sbjct: 89 KNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQGSTADVLQEAD 148
Query: 90 CPYLSNQTCCQR 101
P LSN+ C Q+
Sbjct: 149 VPLLSNEKCQQQ 160
>pdb|1FCD|C Chain C, The Structure Of Flavocytochrome C Sulfide Dehydrogenase
From A Purple Phototrophic Bacterium Chromatium Vinosum
At 2.5 Angstroms Resolution
pdb|1FCD|D Chain D, The Structure Of Flavocytochrome C Sulfide Dehydrogenase
From A Purple Phototrophic Bacterium Chromatium Vinosum
At 2.5 Angstroms Resolution
Length = 174
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 58 ASSKDQIGESCNVSGGKWIWDNKTYPVYTEESCPYL 93
A D+ E C+V GGK + D + Y + + PYL
Sbjct: 94 AKLHDKYCEKCHVEGGKPLADEEDYHILAGQWTPYL 129
>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|B Chain B, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|C Chain C, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|D Chain D, Structure Of A Human Enteropeptidase Light Chain Variant
Length = 235
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 34 KSNDRQIFQFYSEPEVYRQRRPVFASSKDQI---GESCNVSG-GKWIWDNKTYPVYTEES 89
K ND + + +P+ ++Q+ G +C+++G G ++ T + E
Sbjct: 89 KDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEAD 148
Query: 90 CPYLSNQTCCQR 101
P LSN+ C Q+
Sbjct: 149 VPLLSNERCQQQ 160
>pdb|2RI5|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With N358a Point Mutation
Length = 319
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 77 WDNKTYPVYTEESCPYLSNQTCCQRNGRPDSFHQKWRWQPDGCNLPW 123
WD+ TY + + S PY+ CQ+ G+P + Q + PD N W
Sbjct: 182 WDD-TYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDY---PDPDNFXW 224
>pdb|2RI3|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With N358q Point Mutation
Length = 319
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 77 WDNKTYPVYTEESCPYLSNQTCCQRNGRPDSFHQKWRWQPDGCNLPW 123
WD+ TY + + S PY+ CQ+ G+P + Q + PD N W
Sbjct: 182 WDD-TYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDY---PDPDNFXW 224
>pdb|2RI2|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With D355a Point Mutation
Length = 319
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 77 WDNKTYPVYTEESCPYLSNQTCCQRNGRPDSFHQKWRWQPDGCNLPW 123
WD+ TY + + S PY+ CQ+ G+P + Q + PD N W
Sbjct: 182 WDD-TYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDY---PDPDNFXW 224
>pdb|2RHY|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
Bound To Monomethyl-Lysine
Length = 319
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 77 WDNKTYPVYTEESCPYLSNQTCCQRNGRPDSFHQKWRWQPDGCNLPW 123
WD+ TY + + S PY+ CQ+ G+P + Q + PD N W
Sbjct: 182 WDD-TYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDY---PDPDNFXW 224
>pdb|2RHU|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
Bound To Dimethyl-Lysine And In Chimera With Histone
H3.3(28-34)
Length = 329
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 77 WDNKTYPVYTEESCPYLSNQTCCQRNGRPDSFHQKWRWQPDGCNLPW 123
WD+ TY + + S PY+ CQ+ G+P + Q + PD N W
Sbjct: 182 WDD-TYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDY---PDPDNFXW 224
>pdb|2RHZ|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With D355n Point Mutation
Length = 319
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 77 WDNKTYPVYTEESCPYLSNQTCCQRNGRPDSFHQKWRWQPDGCNLPW 123
WD+ TY + + S PY+ CQ+ G+P + Q + PD N W
Sbjct: 182 WDD-TYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDY---PDPDNFXW 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,123,608
Number of Sequences: 62578
Number of extensions: 297480
Number of successful extensions: 535
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 17
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)