Query 041668
Match_columns 238
No_of_seqs 163 out of 702
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 16:07:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h08_A Putative hydrolase; GDS 85.7 0.84 2.9E-05 36.3 4.4 37 108-158 3-43 (200)
2 4hf7_A Putative acylhydrolase; 81.8 0.53 1.8E-05 38.2 1.7 15 134-148 25-39 (209)
3 3hp4_A GDSL-esterase; psychrot 77.9 0.59 2E-05 36.4 0.7 15 134-148 1-15 (185)
4 3rjt_A Lipolytic protein G-D-S 74.2 1.2 4E-05 35.0 1.6 15 134-148 7-21 (216)
5 3mil_A Isoamyl acetate-hydroly 67.7 1.5 5.1E-05 35.2 0.8 15 133-147 1-15 (240)
6 1yzf_A Lipase/acylhydrolase; s 64.3 2 6.7E-05 33.1 0.9 13 136-148 2-14 (195)
7 1ivn_A Thioesterase I; hydrola 64.2 2.1 7.1E-05 33.6 1.0 13 136-148 2-14 (190)
8 2q0q_A ARYL esterase; SGNH hyd 61.0 2.4 8.3E-05 33.5 0.9 13 136-148 3-15 (216)
9 2hsj_A Putative platelet activ 60.4 3.6 0.00012 32.5 1.8 16 134-149 33-48 (214)
10 3dci_A Arylesterase; SGNH_hydr 56.9 3.1 0.00011 33.9 0.9 13 136-148 24-36 (232)
11 1fxw_F Alpha2, platelet-activa 56.6 4.8 0.00016 32.7 1.9 16 134-149 38-53 (229)
12 3dc7_A Putative uncharacterize 55.2 3.8 0.00013 33.1 1.1 16 133-148 19-34 (232)
13 1vjg_A Putative lipase from th 55.1 3.1 0.00011 33.3 0.5 18 131-148 16-33 (218)
14 1es9_A PAF-AH, platelet-activa 54.1 5.2 0.00018 32.4 1.8 16 134-149 37-52 (232)
15 3p94_A GDSL-like lipase; serin 52.7 4.7 0.00016 31.4 1.2 17 136-152 23-39 (204)
16 3bzw_A Putative lipase; protei 50.7 5 0.00017 33.7 1.2 16 133-148 24-39 (274)
17 2vpt_A Lipolytic enzyme; ester 47.2 6.4 0.00022 31.6 1.2 13 136-148 6-18 (215)
18 3t6g_B Breast cancer anti-estr 44.0 1.4 4.8E-05 38.5 -3.4 17 133-149 144-160 (229)
19 2w9x_A AXE2A, CJCE2B, putative 43.7 8.5 0.00029 34.3 1.6 15 134-148 141-155 (366)
20 2wao_A Endoglucanase E; plant 41.4 8 0.00027 34.0 1.0 15 134-148 121-135 (341)
21 2waa_A Acetyl esterase, xylan 40.7 7.5 0.00026 34.4 0.7 15 134-148 131-145 (347)
22 1vcc_A DNA topoisomerase I; DN 34.3 5.3 0.00018 29.1 -1.1 15 136-150 55-70 (77)
23 1k7c_A Rhamnogalacturonan acet 32.8 12 0.00042 30.7 0.8 12 137-148 2-13 (233)
24 3grf_A Ornithine carbamoyltran 32.2 20 0.00067 32.5 2.1 27 132-159 158-184 (328)
25 3tpf_A Otcase, ornithine carba 32.0 21 0.0007 32.1 2.2 25 133-159 143-168 (307)
26 2o14_A Hypothetical protein YX 31.5 15 0.00053 33.0 1.3 16 133-148 160-175 (375)
27 4amu_A Ornithine carbamoyltran 30.4 22 0.00076 32.7 2.2 25 133-158 178-202 (365)
28 3r7f_A Aspartate carbamoyltran 30.0 21 0.00072 32.0 1.9 26 133-158 145-170 (304)
29 3skv_A SSFX3; jelly roll, GDSL 28.6 16 0.00054 33.4 0.8 13 135-147 185-197 (385)
30 3csu_A Protein (aspartate carb 27.2 27 0.00091 31.4 2.0 27 133-159 152-178 (310)
31 1oth_A Protein (ornithine tran 26.2 26 0.00087 31.6 1.7 25 133-159 153-177 (321)
32 1pg5_A Aspartate carbamoyltran 26.1 28 0.00097 31.0 2.0 27 133-159 147-173 (299)
33 3sds_A Ornithine carbamoyltran 25.8 28 0.00096 31.9 1.9 24 134-159 187-210 (353)
34 4ekn_B Aspartate carbamoyltran 24.5 32 0.0011 30.7 2.0 26 133-158 149-174 (306)
35 3q98_A Transcarbamylase; rossm 24.5 32 0.0011 32.0 2.1 27 133-159 189-220 (399)
36 3gd5_A Otcase, ornithine carba 23.9 32 0.0011 31.1 1.9 24 133-158 155-178 (323)
37 4f2g_A Otcase 1, ornithine car 23.8 32 0.0011 30.8 1.9 25 133-159 152-176 (309)
38 2yfk_A Aspartate/ornithine car 23.6 34 0.0012 32.0 2.1 27 133-159 186-217 (418)
39 4ep1_A Otcase, ornithine carba 23.5 33 0.0011 31.3 1.9 25 133-159 177-201 (340)
40 4a8t_A Putrescine carbamoyltra 23.1 35 0.0012 31.1 2.0 25 133-159 173-197 (339)
41 1ml4_A Aspartate transcarbamoy 22.9 32 0.0011 30.8 1.7 27 133-159 153-179 (308)
42 1vlv_A Otcase, ornithine carba 21.9 38 0.0013 30.6 2.0 26 133-159 165-190 (325)
43 2qru_A Uncharacterized protein 21.9 72 0.0025 26.1 3.6 23 135-157 95-117 (274)
44 4a8p_A Putrescine carbamoyltra 21.5 39 0.0013 31.0 2.0 25 133-159 151-175 (355)
No 1
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=85.71 E-value=0.84 Score=36.29 Aligned_cols=37 Identities=30% Similarity=0.723 Sum_probs=24.2
Q ss_pred cCcee--eeeCC--CCCCCCCChHHHHHHHcCCceEEeehhhhHHHHHHHHhhhc
Q 041668 108 FHQKW--RWQPD--GCNLPWFDPLKLLDILSGKRLMFIGDSIQRGQFESMVCMVQ 158 (238)
Q Consensus 108 ~y~~W--rWqP~--gC~Lprfd~~~fl~~lrgKrivFVGDSl~Rnq~~SL~ClL~ 158 (238)
+|..| .|-|. .-++| ||+|+|||++..-...|..+|.
T Consensus 3 ~~~ew~~~~~p~~~~~~~p--------------rVl~iGDSit~G~~~~l~~~l~ 43 (200)
T 4h08_A 3 EYIEWSDIWIPGANKTDLP--------------HVLLIGNSITRGYYGKVEAALK 43 (200)
T ss_dssp SSCCCEEEECTTTTCCSSC--------------EEEEEESHHHHHHHHHHHHHTT
T ss_pred ceeehhhhccCCcccCCCC--------------eEEEEchhHHhhhHHHHHHHhc
Confidence 56676 47774 34444 5999999999874444444443
No 2
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=81.76 E-value=0.53 Score=38.21 Aligned_cols=15 Identities=40% Similarity=0.899 Sum_probs=13.1
Q ss_pred cCCceEEeehhhhHH
Q 041668 134 SGKRLMFIGDSIQRG 148 (238)
Q Consensus 134 rgKrivFVGDSl~Rn 148 (238)
++++|+|+|||++..
T Consensus 25 ~~~~Iv~~GDSit~g 39 (209)
T 4hf7_A 25 KEKRVVFMGNXITEG 39 (209)
T ss_dssp GGCCEEEEESHHHHH
T ss_pred CCCeEEEECcHHHhC
Confidence 468999999999975
No 3
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=77.86 E-value=0.59 Score=36.37 Aligned_cols=15 Identities=13% Similarity=0.523 Sum_probs=12.7
Q ss_pred cCCceEEeehhhhHH
Q 041668 134 SGKRLMFIGDSIQRG 148 (238)
Q Consensus 134 rgKrivFVGDSl~Rn 148 (238)
.|++|+|+|||++..
T Consensus 1 ~~~~i~~~GDSit~G 15 (185)
T 3hp4_A 1 MDNTILILGDXLSAA 15 (185)
T ss_dssp -CEEEEEEECTTTTT
T ss_pred CCCeEEEECCccccc
Confidence 378999999999974
No 4
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=74.23 E-value=1.2 Score=35.04 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=13.1
Q ss_pred cCCceEEeehhhhHH
Q 041668 134 SGKRLMFIGDSIQRG 148 (238)
Q Consensus 134 rgKrivFVGDSl~Rn 148 (238)
.+++|+|+|||++..
T Consensus 7 ~~~~i~~~GDSit~g 21 (216)
T 3rjt_A 7 PGSKLVMVGDSITDC 21 (216)
T ss_dssp TTCEEEEEESHHHHT
T ss_pred CCCEEEEEecccccc
Confidence 478999999999965
No 5
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=67.66 E-value=1.5 Score=35.20 Aligned_cols=15 Identities=27% Similarity=0.642 Sum_probs=12.9
Q ss_pred HcCCceEEeehhhhH
Q 041668 133 LSGKRLMFIGDSIQR 147 (238)
Q Consensus 133 lrgKrivFVGDSl~R 147 (238)
|..++|+|+|||++.
T Consensus 1 ~~~~~i~~~GDSit~ 15 (240)
T 3mil_A 1 MDYEKFLLFGDSITE 15 (240)
T ss_dssp CCCEEEEEEESHHHH
T ss_pred CCcccEEEEccchhh
Confidence 346799999999998
No 6
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=64.32 E-value=2 Score=33.13 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=11.8
Q ss_pred CceEEeehhhhHH
Q 041668 136 KRLMFIGDSIQRG 148 (238)
Q Consensus 136 KrivFVGDSl~Rn 148 (238)
++|+|+|||++..
T Consensus 2 ~~i~~~GDS~t~g 14 (195)
T 1yzf_A 2 RKIVLFGDSITAG 14 (195)
T ss_dssp EEEEEEESHHHHC
T ss_pred CeEEEEccccccC
Confidence 5799999999987
No 7
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=64.19 E-value=2.1 Score=33.57 Aligned_cols=13 Identities=38% Similarity=0.856 Sum_probs=11.8
Q ss_pred CceEEeehhhhHH
Q 041668 136 KRLMFIGDSIQRG 148 (238)
Q Consensus 136 KrivFVGDSl~Rn 148 (238)
|+|+|+|||++..
T Consensus 2 ~~i~~~GDSit~g 14 (190)
T 1ivn_A 2 DTLLILGDSLSAG 14 (190)
T ss_dssp EEEEEEECHHHHC
T ss_pred CcEEEEecCcccC
Confidence 6899999999975
No 8
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=61.02 E-value=2.4 Score=33.53 Aligned_cols=13 Identities=46% Similarity=0.897 Sum_probs=11.3
Q ss_pred CceEEeehhhhHH
Q 041668 136 KRLMFIGDSIQRG 148 (238)
Q Consensus 136 KrivFVGDSl~Rn 148 (238)
|+|+|+|||++..
T Consensus 3 ~~i~~~GDSit~G 15 (216)
T 2q0q_A 3 KRILCFGDSLTWG 15 (216)
T ss_dssp EEEEEEESHHHHT
T ss_pred ceEEEEecCcccC
Confidence 6899999999953
No 9
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=60.42 E-value=3.6 Score=32.55 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=13.5
Q ss_pred cCCceEEeehhhhHHH
Q 041668 134 SGKRLMFIGDSIQRGQ 149 (238)
Q Consensus 134 rgKrivFVGDSl~Rnq 149 (238)
...+|+|+|||++...
T Consensus 33 ~~~~i~~~GDSit~g~ 48 (214)
T 2hsj_A 33 VEPNILFIGDSIVEYY 48 (214)
T ss_dssp SCCSEEEEESHHHHTC
T ss_pred ccCCEEEEecchhcCC
Confidence 4678999999999864
No 10
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=56.90 E-value=3.1 Score=33.95 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=11.5
Q ss_pred CceEEeehhhhHH
Q 041668 136 KRLMFIGDSIQRG 148 (238)
Q Consensus 136 KrivFVGDSl~Rn 148 (238)
|+|+|+|||++..
T Consensus 24 ~~I~~lGDSit~G 36 (232)
T 3dci_A 24 KTVLAFGDSLTWG 36 (232)
T ss_dssp EEEEEEESHHHHT
T ss_pred CEEEEEECccccC
Confidence 6899999999864
No 11
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=56.56 E-value=4.8 Score=32.74 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=13.9
Q ss_pred cCCceEEeehhhhHHH
Q 041668 134 SGKRLMFIGDSIQRGQ 149 (238)
Q Consensus 134 rgKrivFVGDSl~Rnq 149 (238)
.+.+|+|+|||++...
T Consensus 38 ~~~~i~~~GDSit~g~ 53 (229)
T 1fxw_F 38 KEPDVLFVGDSMVQLM 53 (229)
T ss_dssp CCCSEEEEESHHHHGG
T ss_pred CCCCEEEEecchhcCC
Confidence 5788999999999864
No 12
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=55.18 E-value=3.8 Score=33.09 Aligned_cols=16 Identities=44% Similarity=0.571 Sum_probs=13.5
Q ss_pred HcCCceEEeehhhhHH
Q 041668 133 LSGKRLMFIGDSIQRG 148 (238)
Q Consensus 133 lrgKrivFVGDSl~Rn 148 (238)
+..++|+|+|||++..
T Consensus 19 ~~~~~i~~lGDSit~G 34 (232)
T 3dc7_A 19 VSFKRPAWLGDSITAN 34 (232)
T ss_dssp BCCSSEEEEESTTTST
T ss_pred CCcceEEEEccccccc
Confidence 4458999999999975
No 13
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=55.12 E-value=3.1 Score=33.31 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=14.2
Q ss_pred HHHcCCceEEeehhhhHH
Q 041668 131 DILSGKRLMFIGDSIQRG 148 (238)
Q Consensus 131 ~~lrgKrivFVGDSl~Rn 148 (238)
.....++|+|+|||++..
T Consensus 16 ~~~~~~~i~~lGDSit~g 33 (218)
T 1vjg_A 16 QSKTQIRICFVGDSFVNG 33 (218)
T ss_dssp -CCEEEEEEEEESHHHHT
T ss_pred ccCCCceEEEEccccccC
Confidence 344568999999999986
No 14
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=54.09 E-value=5.2 Score=32.41 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=14.0
Q ss_pred cCCceEEeehhhhHHH
Q 041668 134 SGKRLMFIGDSIQRGQ 149 (238)
Q Consensus 134 rgKrivFVGDSl~Rnq 149 (238)
...+|+|+|||++...
T Consensus 37 ~~~~i~~~GDSit~g~ 52 (232)
T 1es9_A 37 KEPEVVFIGDSLVQLM 52 (232)
T ss_dssp CCCSEEEEESHHHHTH
T ss_pred CCCCEEEEechHhhcc
Confidence 5688999999999984
No 15
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=52.72 E-value=4.7 Score=31.43 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=13.2
Q ss_pred CceEEeehhhhHHHHHH
Q 041668 136 KRLMFIGDSIQRGQFES 152 (238)
Q Consensus 136 KrivFVGDSl~Rnq~~S 152 (238)
.+|+|+|||++..--..
T Consensus 23 ~~i~~~GDSit~g~~~~ 39 (204)
T 3p94_A 23 SNVVFMGNSITDGWWPA 39 (204)
T ss_dssp EEEEEEESHHHHTHHHH
T ss_pred ceEEEEccchhhcccch
Confidence 38999999999864333
No 16
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=50.67 E-value=5 Score=33.70 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=13.0
Q ss_pred HcCCceEEeehhhhHH
Q 041668 133 LSGKRLMFIGDSIQRG 148 (238)
Q Consensus 133 lrgKrivFVGDSl~Rn 148 (238)
..+++|+|+|||++..
T Consensus 24 ~~~~~iv~lGDSiT~G 39 (274)
T 3bzw_A 24 WQGKKVGYIGDSITDP 39 (274)
T ss_dssp TTTCEEEEEESTTTCT
T ss_pred CCCCEEEEEecCcccC
Confidence 3468999999999853
No 17
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=47.18 E-value=6.4 Score=31.56 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=11.3
Q ss_pred CceEEeehhhhHH
Q 041668 136 KRLMFIGDSIQRG 148 (238)
Q Consensus 136 KrivFVGDSl~Rn 148 (238)
.+|+|+|||++..
T Consensus 6 ~~i~~~GDSit~G 18 (215)
T 2vpt_A 6 IKIMPVGDSCTEG 18 (215)
T ss_dssp EEEEEEESHHHHT
T ss_pred eEEEecccccccC
Confidence 5799999999975
No 18
>3t6g_B Breast cancer anti-estrogen resistance protein 1; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=43.97 E-value=1.4 Score=38.47 Aligned_cols=17 Identities=47% Similarity=0.899 Sum_probs=13.9
Q ss_pred HcCCceEEeehhhhHHH
Q 041668 133 LSGKRLMFIGDSIQRGQ 149 (238)
Q Consensus 133 lrgKrivFVGDSl~Rnq 149 (238)
|.+.+++||||.+.|+.
T Consensus 144 lsAHKLVfIGDTL~r~~ 160 (229)
T 3t6g_B 144 LSAHKLVFIGDTLSRQA 160 (229)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred EEeeeeeeecchHHHhh
Confidence 34678999999999864
No 19
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=43.67 E-value=8.5 Score=34.32 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=12.8
Q ss_pred cCCceEEeehhhhHH
Q 041668 134 SGKRLMFIGDSIQRG 148 (238)
Q Consensus 134 rgKrivFVGDSl~Rn 148 (238)
..++|+|+|||++-.
T Consensus 141 ~~~~I~~iGDSIT~G 155 (366)
T 2w9x_A 141 RKRQIEFIGDSFTVG 155 (366)
T ss_dssp CCCEEEEEESHHHHT
T ss_pred CCceEEEEecccccc
Confidence 568899999999964
No 20
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=41.39 E-value=8 Score=33.95 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=12.7
Q ss_pred cCCceEEeehhhhHH
Q 041668 134 SGKRLMFIGDSIQRG 148 (238)
Q Consensus 134 rgKrivFVGDSl~Rn 148 (238)
..++|+|+|||++-.
T Consensus 121 ~~~~I~~iGDSiT~G 135 (341)
T 2wao_A 121 LERKIEFIGDSITCA 135 (341)
T ss_dssp CSEEEEEEESHHHHT
T ss_pred CCceEEEEccccccC
Confidence 467999999999864
No 21
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=40.71 E-value=7.5 Score=34.42 Aligned_cols=15 Identities=27% Similarity=0.762 Sum_probs=12.7
Q ss_pred cCCceEEeehhhhHH
Q 041668 134 SGKRLMFIGDSIQRG 148 (238)
Q Consensus 134 rgKrivFVGDSl~Rn 148 (238)
..++|+|+|||++-.
T Consensus 131 ~~~~I~~iGDSIT~G 145 (347)
T 2waa_A 131 PQRKILVLGDSVTCG 145 (347)
T ss_dssp CSEEEEEEESTTTTT
T ss_pred CCceEEEeecccccc
Confidence 467899999999864
No 22
>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus} SCOP: d.121.1.1
Probab=34.29 E-value=5.3 Score=29.07 Aligned_cols=15 Identities=53% Similarity=0.961 Sum_probs=11.9
Q ss_pred CceEEee-hhhhHHHH
Q 041668 136 KRLMFIG-DSIQRGQF 150 (238)
Q Consensus 136 KrivFVG-DSl~Rnq~ 150 (238)
.+++||| ||-+|-||
T Consensus 55 ~~lIfvG~DSKgrkQY 70 (77)
T 1vcc_A 55 TRLIFVGSDSKGRRQY 70 (77)
T ss_dssp TSEEEEEECTTSCEEE
T ss_pred CceEEEeecCCCceee
Confidence 5799999 88777765
No 23
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=32.83 E-value=12 Score=30.69 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=10.9
Q ss_pred ceEEeehhhhHH
Q 041668 137 RLMFIGDSIQRG 148 (238)
Q Consensus 137 rivFVGDSl~Rn 148 (238)
+|+|+|||++.+
T Consensus 2 ~I~~~GDS~t~g 13 (233)
T 1k7c_A 2 TVYLAGDSTMAK 13 (233)
T ss_dssp EEEEECCTTTST
T ss_pred EEEEEecCCCcC
Confidence 689999999986
No 24
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=32.18 E-value=20 Score=32.52 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=22.4
Q ss_pred HHcCCceEEeehhhhHHHHHHHHhhhcc
Q 041668 132 ILSGKRLMFIGDSIQRGQFESMVCMVQS 159 (238)
Q Consensus 132 ~lrgKrivFVGDSl~Rnq~~SL~ClL~~ 159 (238)
.++|++|+||||-.+ |...|++.++..
T Consensus 158 ~l~gl~va~vGD~~~-~va~Sl~~~~~~ 184 (328)
T 3grf_A 158 GFKGIKFAYCGDSMN-NVTYDLMRGCAL 184 (328)
T ss_dssp TGGGCCEEEESCCSS-HHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCc-chHHHHHHHHHH
Confidence 478999999999866 688998887753
No 25
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=32.03 E-value=21 Score=32.07 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=20.5
Q ss_pred Hc-CCceEEeehhhhHHHHHHHHhhhcc
Q 041668 133 LS-GKRLMFIGDSIQRGQFESMVCMVQS 159 (238)
Q Consensus 133 lr-gKrivFVGDSl~Rnq~~SL~ClL~~ 159 (238)
++ |++|+|||| .-|...|++.++..
T Consensus 143 l~~gl~va~vGD--~~~va~Sl~~~~~~ 168 (307)
T 3tpf_A 143 QNGIAKVAFIGD--SNNMCNSWLITAAI 168 (307)
T ss_dssp GGGCCEEEEESC--SSHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcC--CCccHHHHHHHHHH
Confidence 56 999999999 35688999887763
No 26
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=31.51 E-value=15 Score=32.98 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=13.7
Q ss_pred HcCCceEEeehhhhHH
Q 041668 133 LSGKRLMFIGDSIQRG 148 (238)
Q Consensus 133 lrgKrivFVGDSl~Rn 148 (238)
..+++|+|+|||++..
T Consensus 160 ~~~~~Iv~lGDSiT~G 175 (375)
T 2o14_A 160 VTNRTIYVGGDSTVCN 175 (375)
T ss_dssp CCCCEEEEEECTTTSC
T ss_pred CCCcEEEEecCccccC
Confidence 3567999999999987
No 27
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=30.45 E-value=22 Score=32.72 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.1
Q ss_pred HcCCceEEeehhhhHHHHHHHHhhhc
Q 041668 133 LSGKRLMFIGDSIQRGQFESMVCMVQ 158 (238)
Q Consensus 133 lrgKrivFVGDSl~Rnq~~SL~ClL~ 158 (238)
++|++|+||||-.+ |.-.|++.++.
T Consensus 178 l~glkva~vGD~~n-nva~Sl~~~~~ 202 (365)
T 4amu_A 178 LKNKKIVFIGDYKN-NVGVSTMIGAA 202 (365)
T ss_dssp CTTCEEEEESSTTS-HHHHHHHHHHH
T ss_pred CCCCEEEEECCCCc-chHHHHHHHHH
Confidence 67999999999866 58889888775
No 28
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=30.04 E-value=21 Score=31.99 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=20.9
Q ss_pred HcCCceEEeehhhhHHHHHHHHhhhc
Q 041668 133 LSGKRLMFIGDSIQRGQFESMVCMVQ 158 (238)
Q Consensus 133 lrgKrivFVGDSl~Rnq~~SL~ClL~ 158 (238)
++|++|+||||-..-|...|++.++.
T Consensus 145 l~glkva~vGD~~~~rva~Sl~~~~~ 170 (304)
T 3r7f_A 145 FKGLTVSIHGDIKHSRVARSNAEVLT 170 (304)
T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHH
Confidence 57999999999765677788777665
No 29
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=28.62 E-value=16 Score=33.43 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=11.5
Q ss_pred CCceEEeehhhhH
Q 041668 135 GKRLMFIGDSIQR 147 (238)
Q Consensus 135 gKrivFVGDSl~R 147 (238)
.++|+|+|||++.
T Consensus 185 ~~~Iv~~GDSiT~ 197 (385)
T 3skv_A 185 KPHWIHYGDSICH 197 (385)
T ss_dssp CCEEEEEECSSCT
T ss_pred CceEEEEeccccC
Confidence 6899999999974
No 30
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=27.18 E-value=27 Score=31.38 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=21.4
Q ss_pred HcCCceEEeehhhhHHHHHHHHhhhcc
Q 041668 133 LSGKRLMFIGDSIQRGQFESMVCMVQS 159 (238)
Q Consensus 133 lrgKrivFVGDSl~Rnq~~SL~ClL~~ 159 (238)
++|++|++|||-..-|...|++.++..
T Consensus 152 l~gl~va~vGD~~~~rva~Sl~~~~~~ 178 (310)
T 3csu_A 152 LDNLHVAMVGDLKYGRTVHSLTQALAK 178 (310)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHh
Confidence 678999999996655688888887753
No 31
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=26.18 E-value=26 Score=31.65 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=20.5
Q ss_pred HcCCceEEeehhhhHHHHHHHHhhhcc
Q 041668 133 LSGKRLMFIGDSIQRGQFESMVCMVQS 159 (238)
Q Consensus 133 lrgKrivFVGDSl~Rnq~~SL~ClL~~ 159 (238)
++|.+|++|||- .|...|++-++..
T Consensus 153 l~gl~va~vGD~--~~va~Sl~~~~~~ 177 (321)
T 1oth_A 153 LKGLTLSWIGDG--NNILHSIMMSAAK 177 (321)
T ss_dssp CTTCEEEEESCS--SHHHHHHHTTTGG
T ss_pred cCCcEEEEECCc--hhhHHHHHHHHHH
Confidence 579999999994 3799999887764
No 32
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=26.08 E-value=28 Score=31.01 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=21.7
Q ss_pred HcCCceEEeehhhhHHHHHHHHhhhcc
Q 041668 133 LSGKRLMFIGDSIQRGQFESMVCMVQS 159 (238)
Q Consensus 133 lrgKrivFVGDSl~Rnq~~SL~ClL~~ 159 (238)
++|++|++|||-..-|...|++..+..
T Consensus 147 l~gl~va~vGD~~~~rva~Sl~~~~~~ 173 (299)
T 1pg5_A 147 IDGLVFALLGDLKYARTVNSLLRILTR 173 (299)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGG
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHh
Confidence 578999999997655688888887753
No 33
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=25.76 E-value=28 Score=31.86 Aligned_cols=24 Identities=13% Similarity=0.386 Sum_probs=20.2
Q ss_pred cCCceEEeehhhhHHHHHHHHhhhcc
Q 041668 134 SGKRLMFIGDSIQRGQFESMVCMVQS 159 (238)
Q Consensus 134 rgKrivFVGDSl~Rnq~~SL~ClL~~ 159 (238)
+|++|+||||- .|...|++.++..
T Consensus 187 ~glkva~vGD~--~nva~Sl~~~l~~ 210 (353)
T 3sds_A 187 EGLKIAWVGDA--NNVLFDLAIAATK 210 (353)
T ss_dssp TTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCEEEEECCC--chHHHHHHHHHHH
Confidence 79999999997 3689999887753
No 34
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=24.52 E-value=32 Score=30.75 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=20.7
Q ss_pred HcCCceEEeehhhhHHHHHHHHhhhc
Q 041668 133 LSGKRLMFIGDSIQRGQFESMVCMVQ 158 (238)
Q Consensus 133 lrgKrivFVGDSl~Rnq~~SL~ClL~ 158 (238)
++|++|+||||-..-|...|++.++.
T Consensus 149 l~glkva~vGD~~~~rva~Sl~~~~~ 174 (306)
T 4ekn_B 149 IDGIKIAFVGDLKYGRTVHSLVYALS 174 (306)
T ss_dssp STTCEEEEESCTTTCHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHH
Confidence 57999999999764467788887765
No 35
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=24.47 E-value=32 Score=31.99 Aligned_cols=27 Identities=11% Similarity=0.242 Sum_probs=19.5
Q ss_pred HcCCceEEeehh---hhH--HHHHHHHhhhcc
Q 041668 133 LSGKRLMFIGDS---IQR--GQFESMVCMVQS 159 (238)
Q Consensus 133 lrgKrivFVGDS---l~R--nq~~SL~ClL~~ 159 (238)
++|++|++|||= .+| |...|++.++..
T Consensus 189 l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~ 220 (399)
T 3q98_A 189 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTR 220 (399)
T ss_dssp GTTCEEEEECCCCSSCCCCTHHHHHHHHHHGG
T ss_pred cCCCEEEEEEecccccCcchHHHHHHHHHHHH
Confidence 568899999883 333 777888876653
No 36
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=23.90 E-value=32 Score=31.08 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=19.9
Q ss_pred HcCCceEEeehhhhHHHHHHHHhhhc
Q 041668 133 LSGKRLMFIGDSIQRGQFESMVCMVQ 158 (238)
Q Consensus 133 lrgKrivFVGDSl~Rnq~~SL~ClL~ 158 (238)
++|++|+||||- -|...|++.++.
T Consensus 155 l~glkva~vGD~--~rva~Sl~~~~~ 178 (323)
T 3gd5_A 155 LAGLKLAYVGDG--NNVAHSLLLGCA 178 (323)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--CcHHHHHHHHHH
Confidence 579999999997 677888887764
No 37
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=23.78 E-value=32 Score=30.79 Aligned_cols=25 Identities=16% Similarity=0.424 Sum_probs=20.6
Q ss_pred HcCCceEEeehhhhHHHHHHHHhhhcc
Q 041668 133 LSGKRLMFIGDSIQRGQFESMVCMVQS 159 (238)
Q Consensus 133 lrgKrivFVGDSl~Rnq~~SL~ClL~~ 159 (238)
++|++|+||||- -|...|++.++..
T Consensus 152 l~glkva~vGD~--~~va~Sl~~~~~~ 176 (309)
T 4f2g_A 152 IRGKTVAWVGDA--NNMLYTWIQAARI 176 (309)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--cchHHHHHHHHHH
Confidence 579999999994 5689999887753
No 38
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=23.59 E-value=34 Score=32.02 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=20.0
Q ss_pred HcCCceEEeeh---hhhH--HHHHHHHhhhcc
Q 041668 133 LSGKRLMFIGD---SIQR--GQFESMVCMVQS 159 (238)
Q Consensus 133 lrgKrivFVGD---Sl~R--nq~~SL~ClL~~ 159 (238)
++|++|++||| |.+| |.-.|++.++..
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~ 217 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTR 217 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGG
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHH
Confidence 66899999987 3355 777888777653
No 39
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=23.53 E-value=33 Score=31.29 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=20.5
Q ss_pred HcCCceEEeehhhhHHHHHHHHhhhcc
Q 041668 133 LSGKRLMFIGDSIQRGQFESMVCMVQS 159 (238)
Q Consensus 133 lrgKrivFVGDSl~Rnq~~SL~ClL~~ 159 (238)
++|++|+||||- -|...|++.++..
T Consensus 177 l~glkva~vGD~--~nva~Sl~~~~~~ 201 (340)
T 4ep1_A 177 FKGIKLAYVGDG--NNVCHSLLLASAK 201 (340)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--chhHHHHHHHHHH
Confidence 679999999996 5588888887753
No 40
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=23.06 E-value=35 Score=31.05 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=20.5
Q ss_pred HcCCceEEeehhhhHHHHHHHHhhhcc
Q 041668 133 LSGKRLMFIGDSIQRGQFESMVCMVQS 159 (238)
Q Consensus 133 lrgKrivFVGDSl~Rnq~~SL~ClL~~ 159 (238)
++|++|+||||- -|...|++.++..
T Consensus 173 l~glkva~vGD~--~rva~Sl~~~~~~ 197 (339)
T 4a8t_A 173 LEDCKVVFVGDA--TQVCFSLGLITTK 197 (339)
T ss_dssp GGGCEEEEESSC--CHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--chhHHHHHHHHHH
Confidence 678999999997 6788888877753
No 41
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=22.92 E-value=32 Score=30.79 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=21.7
Q ss_pred HcCCceEEeehhhhHHHHHHHHhhhcc
Q 041668 133 LSGKRLMFIGDSIQRGQFESMVCMVQS 159 (238)
Q Consensus 133 lrgKrivFVGDSl~Rnq~~SL~ClL~~ 159 (238)
++|++|++|||-..-|...|++-.+..
T Consensus 153 l~gl~va~vGD~~~~rva~Sl~~~~~~ 179 (308)
T 1ml4_A 153 IDGLKIGLLGDLKYGRTVHSLAEALTF 179 (308)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGG
T ss_pred CCCeEEEEeCCCCcCchHHHHHHHHHH
Confidence 568999999997655688898887753
No 42
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=21.94 E-value=38 Score=30.56 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=20.1
Q ss_pred HcCCceEEeehhhhHHHHHHHHhhhcc
Q 041668 133 LSGKRLMFIGDSIQRGQFESMVCMVQS 159 (238)
Q Consensus 133 lrgKrivFVGDSl~Rnq~~SL~ClL~~ 159 (238)
++|++|++|||-- -|...|++.++..
T Consensus 165 l~gl~va~vGD~~-~rva~Sl~~~~~~ 190 (325)
T 1vlv_A 165 LKGVKVVFMGDTR-NNVATSLMIACAK 190 (325)
T ss_dssp STTCEEEEESCTT-SHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCC-cCcHHHHHHHHHH
Confidence 5689999999932 3688888887753
No 43
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Probab=21.86 E-value=72 Score=26.07 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=19.7
Q ss_pred CCceEEeehhhhHHHHHHHHhhh
Q 041668 135 GKRLMFIGDSIQRGQFESMVCMV 157 (238)
Q Consensus 135 gKrivFVGDSl~Rnq~~SL~ClL 157 (238)
.++++++|||.+=|+-..++..+
T Consensus 95 ~~~i~l~G~SaGG~lA~~~a~~~ 117 (274)
T 2qru_A 95 NQSFGLCGRSAGGYLMLQLTKQL 117 (274)
T ss_dssp TCCEEEEEETHHHHHHHHHHHHH
T ss_pred CCcEEEEEECHHHHHHHHHHHHH
Confidence 68999999999999988877544
No 44
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=21.48 E-value=39 Score=30.99 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=20.6
Q ss_pred HcCCceEEeehhhhHHHHHHHHhhhcc
Q 041668 133 LSGKRLMFIGDSIQRGQFESMVCMVQS 159 (238)
Q Consensus 133 lrgKrivFVGDSl~Rnq~~SL~ClL~~ 159 (238)
++|++|+||||- -|...|++.++..
T Consensus 151 l~glkva~vGD~--~rva~Sl~~~~~~ 175 (355)
T 4a8p_A 151 LEDCKVVFVGDA--TQVCFSLGLITTK 175 (355)
T ss_dssp GGGCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--chhHHHHHHHHHH
Confidence 678999999997 6788888887753
Done!