BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041669
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YIJ|A Chain A, Crystal Structure Of Phospholipase A1
pdb|2YIJ|B Chain B, Crystal Structure Of Phospholipase A1
Length = 419
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 145/298 (48%), Gaps = 48/298 (16%)
Query: 13 LAHFWREIQGFNDWENLVEPLHPLLRQEIIRYGELVTACYKAFDLDPVSKRFLNCKYGKN 72
A WR++ G N W+ ++PL LR+ II YGE A Y F+++ S+ Y +
Sbjct: 19 FAKRWRDLSGQNHWKGXLQPLDQDLREYIIHYGEXAQAGYDTFNINTESQFAGASIYSRK 78
Query: 73 SMMREVGLQ----DSGYQVTKYIYATPDININ-----IPIQNVASSSSSCSRWIGYVAVS 123
+VGL+ + Y+VTK+IYAT DI++ PI S S W GYVAV+
Sbjct: 79 DFFAKVGLEIAHPYTKYKVTKFIYATSDIHVPESFLLFPISREGWSKES--NWXGYVAVT 136
Query: 124 SDESVKRLGRRDVVVSFRGTVTNPEWIANFMSSLTPARLDPNNPRPDVKVESGFLSLYTS 183
D+ LGRRD+VVS+RG+V EW+ +F L A V++ G+ S+Y S
Sbjct: 137 DDQGTALLGRRDIVVSWRGSVQPLEWVEDFEFGLVNAIKIFGERNDQVQIHQGWYSIYXS 196
Query: 184 -DESDKFGLGSCREQLLSEVSRLLNKYKGEELSITLAGHSMG------------------ 224
DE F + R+Q+L EV RLL KYK EE+SIT+ GHS+G
Sbjct: 197 QDERSPFTKTNARDQVLREVGRLLEKYKDEEVSITICGHSLGAALATLSATDIVANGYNR 256
Query: 225 -----------------RPRVGNSGFKARCDEL-GVKVLRIVNINDPITKLPGVLLNE 264
PRVG+S F+ L ++VLR N+ D I P + +E
Sbjct: 257 PKSRPDKSCPVTAFVFASPRVGDSDFRKLFSGLEDIRVLRTRNLPDVIPIYPPIGYSE 314
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 22/168 (13%)
Query: 106 VASSSSSCSRWIGYVAVSSDESVKRLGRRDVVVSFRGTVTNPEWIANF--------MSSL 157
VAS + S + GYVA R+++VVSFRG++ W+ N ++S
Sbjct: 52 VASFTGSKTGIGGYVATDPT-------RKEIVVSFRGSINIRNWLTNLDFDQDDCSLTSG 104
Query: 158 TPARLDPNNPRPDVKVESGFLSLYTSDESDKFGLGSCREQLLSEVSRLLN---KYKGEEL 214
N ++ + + F + S L V+ L + G L
Sbjct: 105 CGVHSGFQNAWNEISAAATAAVAKARKANPSFKVVSVGHSLGGAVATLAGANLRIGGTPL 164
Query: 215 SITLAGHSMGRPRVGNSGFKARCDELGVKVLRIVNINDPITKLPGVLL 262
I ++ G PRVGN+ A R+ N DP+ +LP ++
Sbjct: 165 DI----YTYGSPRVGNTQLAAFVSNQAGGEFRVTNAKDPVPRLPPLIF 208
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 46/155 (29%)
Query: 133 RRDVVVSFRGTVTNPEWIANFMSSLTPARLDPNNPRPDVKVESGFLSLYTSDESDKFGLG 192
+ + + FRG+ + WIA+ + P P + KV GFL Y G
Sbjct: 72 EKTIYIVFRGSSSIRNWIADL--TFVPVSYPPVS---GTKVHKGFLDSY----------G 116
Query: 193 SCREQLLSEVSRLLNKYKGEELSITLAGHSMG---------------------------- 224
+ +L++ V +Y ++++T GHS+G
Sbjct: 117 EVQNELVATVLDQFKQYPSYKVAVT--GHSLGGATALLCALDLYQREEGLSSSNLFLYTQ 174
Query: 225 -RPRVGNSGFKARCDELGVKVLRIVNINDPITKLP 258
+PRVGN F G+ R VN D + LP
Sbjct: 175 GQPRVGNPAFANYVVSTGIPYRRTVNERDIVPHLP 209
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 46/155 (29%)
Query: 133 RRDVVVSFRGTVTNPEWIANFMSSLTPARLDPNNPRPDVKVESGFLSLYTSDESDKFGLG 192
+ + + FRG+ + WIA+ + P P + KV GFL Y G
Sbjct: 72 EKTIYIVFRGSSSIRNWIADL--TFVPVSYPPVS---GTKVHKGFLDSY----------G 116
Query: 193 SCREQLLSEVSRLLNKYKGEELSITLAGHSMG---------------------------- 224
+ +L++ V +Y ++++T GHS+G
Sbjct: 117 EVQNELVATVLDQFKQYPSYKVAVT--GHSLGGATALLCALDLYQREEGLSSSNLFLYTQ 174
Query: 225 -RPRVGNSGFKARCDELGVKVLRIVNINDPITKLP 258
+PRVGN F G+ R VN D + LP
Sbjct: 175 GQPRVGNPAFANYVVSTGIPYRRTVNERDIVPHLP 209
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 46/155 (29%)
Query: 133 RRDVVVSFRGTVTNPEWIANFMSSLTPARLDPNNPRPDVKVESGFLSLYTSDESDKFGLG 192
+ + + FRG+ + WIA+ + P P + KV GFL Y G
Sbjct: 72 EKTIYIVFRGSSSIRNWIADL--TFVPVSYPPVS---GTKVHKGFLDSY----------G 116
Query: 193 SCREQLLSEVSRLLNKYKGEELSITLAGHSMG---------------------------- 224
+ +L++ V +Y ++++T GHS+G
Sbjct: 117 EVQNELVATVLDQFKQYPSYKVAVT--GHSLGGATALLCALDLYQREEGLSSSNLFLYTQ 174
Query: 225 -RPRVGNSGFKARCDELGVKVLRIVNINDPITKLP 258
+PRVGN F G+ R VN D + LP
Sbjct: 175 GQPRVGNPAFANYVVSTGIPYRRTVNERDIVPHLP 209
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 57/155 (36%), Gaps = 46/155 (29%)
Query: 133 RRDVVVSFRGTVTNPEWIANFMSSLTPARLDPNNPRPDVKVESGFLSLYTSDESDKFGLG 192
+ + + FRG+ + WIA+ + P P + KV GFL Y G
Sbjct: 72 EKTIYIVFRGSSSIRNWIADL--TFVPVSYPPVS---GTKVHKGFLDSY----------G 116
Query: 193 SCREQLLSEVSRLLNKYKGEELSITLAGHSMG---------------------------- 224
+ +L++ V +Y ++++T GHS+G
Sbjct: 117 EVQNELVATVLDQFKQYPSYKVAVT--GHSLGGATVLLCALDLYQREEGLSSSNLFLYTQ 174
Query: 225 -RPRVGNSGFKARCDELGVKVLRIVNINDPITKLP 258
+PRVG+ F G+ R VN D + LP
Sbjct: 175 GQPRVGDPAFANYVVSTGIPYRRTVNERDIVPHLP 209
>pdb|1TIA|A Chain A, An Unusual Buried Polar Cluster In A Family Of Fungal
Lipases
Length = 279
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 64/177 (36%), Gaps = 54/177 (30%)
Query: 109 SSSSCSRWIGYVAVSSDESVKRLGRRDVVVSFRGTVTNPEWIANFMSSLTPARLDPNNPR 168
S S+ + GY+AV S VV++FRG+ + W+A+ A NP
Sbjct: 56 SDSTITDTAGYIAVDHTNSA-------VVLAFRGSYSVRNWVAD-------ATFVHTNPG 101
Query: 169 --PDVKVESGFLSLYTSDESDKFGLGSCREQLLSEVSRLLNKYKGEELSITLAGHSMG-- 224
E GF S + R+ ++ E+ ++ + EL + GHS+G
Sbjct: 102 LCDGCLAELGFWSSWK----------LVRDDIIKELKEVVAQNPNYELVVV--GHSLGAA 149
Query: 225 -----------------------RPRVGNSGFKARCDELGVKVLRIVNINDPITKLP 258
PRVGN+ G R + NDP+ KLP
Sbjct: 150 VATLAATDLRGKGYPSAKLYAYASPRVGNAALAKYITAQG-NNFRFTHTNDPVPKLP 205
>pdb|4IKH|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900003, With Two Glutathione Bound
Length = 244
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 146 NPEWIANFMSSLTPARLDPNNP--RPDVKVESGFLSLYTSDESDKF 189
PE+++ ++ PA LDP+ P +P ESG + +Y +D+S +
Sbjct: 61 TPEFLSVSPNNKIPAILDPHGPGDQPLALFESGAILIYLADKSGQL 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,394,412
Number of Sequences: 62578
Number of extensions: 419477
Number of successful extensions: 942
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 10
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)