Query 041671
Match_columns 296
No_of_seqs 145 out of 940
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:30:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13947 GUB_WAK_bind: Wall-as 100.0 5.6E-29 1.2E-33 198.0 10.9 104 25-133 1-106 (106)
2 PF08488 WAK: Wall-associated 99.7 2E-17 4.2E-22 131.1 7.9 95 161-268 1-102 (103)
3 PF12662 cEGF: Complement Clr- 97.8 1.6E-05 3.6E-10 46.2 2.1 23 262-284 1-24 (24)
4 PF12947 EGF_3: EGF domain; I 97.0 0.0005 1.1E-08 44.0 2.0 29 246-276 6-34 (36)
5 PF00008 EGF: EGF-like domain 96.1 0.0038 8.3E-08 38.7 2.0 26 247-273 5-30 (32)
6 PF07645 EGF_CA: Calcium-bindi 95.2 0.019 4.1E-07 37.7 2.7 27 246-274 10-36 (42)
7 cd00053 EGF Epidermal growth f 94.9 0.032 6.8E-07 34.0 2.9 27 246-274 6-32 (36)
8 smart00181 EGF Epidermal growt 94.0 0.053 1.1E-06 33.5 2.6 25 247-274 7-31 (35)
9 smart00179 EGF_CA Calcium-bind 92.3 0.14 3E-06 32.0 2.5 26 247-274 10-36 (39)
10 cd00054 EGF_CA Calcium-binding 91.9 0.16 3.5E-06 31.2 2.5 27 246-274 9-35 (38)
11 PF12661 hEGF: Human growth fa 86.5 0.33 7.2E-06 24.0 0.7 11 264-274 1-11 (13)
12 PF12946 EGF_MSP1_1: MSP1 EGF 81.0 1 2.2E-05 28.9 1.5 27 247-274 6-32 (37)
13 PF14670 FXa_inhibition: Coagu 79.8 1.2 2.5E-05 28.4 1.4 18 253-272 11-28 (36)
14 KOG1214 Nidogen and related ba 78.6 2.4 5.2E-05 44.8 4.0 28 258-286 804-831 (1289)
15 PF00954 S_locus_glycop: S-loc 76.5 4.1 8.9E-05 32.0 4.1 42 224-273 67-108 (110)
16 KOG1214 Nidogen and related ba 69.0 4.9 0.00011 42.6 3.5 39 247-287 701-739 (1289)
17 PF07974 EGF_2: EGF-like domai 68.0 4.8 0.0001 24.8 2.0 24 247-274 7-30 (32)
18 PLN03222 rapid alkalinization 60.4 7.7 0.00017 31.1 2.4 26 259-285 91-117 (119)
19 PF15240 Pro-rich: Proline-ric 58.9 6.4 0.00014 34.2 1.9 18 1-18 1-18 (179)
20 KOG0994 Extracellular matrix g 58.9 4.2 9.2E-05 44.4 0.9 26 253-280 877-907 (1758)
21 KOG4289 Cadherin EGF LAG seven 58.6 7.5 0.00016 43.7 2.7 28 246-275 1245-1272(2531)
22 KOG4260 Uncharacterized conser 58.4 7.1 0.00015 36.2 2.2 47 226-274 222-270 (350)
23 KOG1219 Uncharacterized conser 57.9 12 0.00025 44.3 4.1 37 247-286 3910-3946(4289)
24 PLN03221 rapid alkalinization 57.2 9.5 0.00021 31.3 2.5 27 259-286 109-136 (137)
25 cd01475 vWA_Matrilin VWA_Matri 56.6 7.7 0.00017 34.3 2.1 21 253-275 200-220 (224)
26 PF08261 Carcinustatin: Carcin 48.5 8.4 0.00018 16.3 0.5 6 38-43 3-8 (8)
27 PF05498 RALF: Rapid ALkaliniz 46.4 14 0.00029 26.8 1.6 24 262-286 41-65 (66)
28 PHA03099 epidermal growth fact 39.7 22 0.00048 29.3 2.1 35 236-274 44-78 (139)
29 PF14380 WAK_assoc: Wall-assoc 39.6 41 0.0009 25.6 3.5 40 223-270 53-93 (94)
30 PHA02887 EGF-like protein; Pro 35.4 29 0.00062 28.2 2.0 27 247-274 93-119 (126)
31 PF09064 Tme5_EGF_like: Thromb 27.7 28 0.0006 21.9 0.6 11 262-272 17-27 (34)
32 KOG1219 Uncharacterized conser 26.2 46 0.00099 39.9 2.3 28 247-275 3871-3898(4289)
33 KOG4289 Cadherin EGF LAG seven 25.7 50 0.0011 37.6 2.5 22 252-273 1728-1749(2531)
34 KOG1217 Fibrillins and related 22.0 77 0.0017 30.2 2.9 37 248-286 280-316 (487)
35 PF05953 Allatostatin: Allatos 21.9 45 0.00098 15.7 0.6 7 38-44 5-11 (11)
36 PF01683 EB: EB module; Inter 21.1 79 0.0017 21.0 2.0 21 246-272 26-46 (52)
37 cd00055 EGF_Lam Laminin-type e 20.7 94 0.002 20.7 2.3 15 262-276 29-44 (50)
No 1
>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding
Probab=99.96 E-value=5.6e-29 Score=197.99 Aligned_cols=104 Identities=41% Similarity=0.864 Sum_probs=90.5
Q ss_pred CCCCCCCCCCeeecCCCCCCCCCCCCCCCCeeeccCCCCCCcccc--ccEEEEEEeecCCeeEEEEeeccccccCCCCcc
Q 041671 25 GSGCQEKCGHVTVPYPFGINDPMCAMNMNFFLNCSRRDSPPKLMI--GDLEVFNLSIENGSMIASIFTSRRCYDGLGHRT 102 (296)
Q Consensus 25 ~~~C~~~CG~v~IpYPFGig~~~C~~~~~F~ltC~~~~~~p~l~l--~~~~V~~Is~~~~~v~v~~~~~~~C~~~~~~~~ 102 (296)
+++||++||||+|||||||+ ++|+++++|+|+|++++++|+|++ ++|||++|++++++|+|.+++.+.|+....
T Consensus 1 ~~~C~~~CGnv~IpYPFgi~-~~C~~~~~F~L~C~~~~~~~~l~l~~~~~~V~~I~~~~~~i~v~~~~~~~~~~~~~--- 76 (106)
T PF13947_consen 1 KPGCPSSCGNVSIPYPFGIG-PGCGRDPGFELTCNNNTSPPKLLLSSGNYEVLSISYENGTIRVSDPISSNCYSSSS--- 76 (106)
T ss_pred CCCCCCccCCEeecCCCccC-CCCCCCCCcEEECCCCCCCceeEecCCcEEEEEEecCCCEEEEEeccccceecCCC---
Confidence 57899999999999999999 999999999999999877889887 789999999999999999999888887653
Q ss_pred ccccCcceecCCcCeeeecCCCeEEEEcccc
Q 041671 103 SDYNDAYVKLGHRPLRFSDTRNKLTAIGCDT 133 (296)
Q Consensus 103 ~~~~~~~~~l~~~pf~~S~~~N~~~~~GC~~ 133 (296)
.......+++.+ ||.+|+.+|+|+++||++
T Consensus 77 ~~~~~~~~~~~~-~~~~s~~~N~~~~~GC~t 106 (106)
T PF13947_consen 77 SNSSNSNLSLNG-PFFFSSSSNKFTVVGCNT 106 (106)
T ss_pred CcccccEEeecC-CceEccCCcEEEEECCCC
Confidence 222234566666 899999999999999985
No 2
>PF08488 WAK: Wall-associated kinase; InterPro: IPR013695 This domain is found together with the eukaryotic protein kinase domain IPR000719 from INTERPRO in plant wall-associated kinases (WAKs) and related proteins. WAKs are serine-threonine kinases which might be involved in signalling to the cytoplasm and are required for cell expansion []. ; GO: 0004674 protein serine/threonine kinase activity, 0016021 integral to membrane
Probab=99.71 E-value=2e-17 Score=131.06 Aligned_cols=95 Identities=33% Similarity=0.700 Sum_probs=68.1
Q ss_pred CCCCCCcceeeeccCCC-CcceEEEEeeecCCCCCCccccceeeeeecc-ccccccccccCCCC-----CCcEEEEEEEe
Q 041671 161 ESSCSGIGCCQTPLPKS-LKSLELTLRSVHNHEDMGEFMQCDYALLADE-TFNIAEFRASEDKS-----SSNVTIEWVVE 233 (296)
Q Consensus 161 ~~~CsG~gCCq~~ip~~-l~~~~~~~~~~~~~~~~~~~~~c~~afl~~~-~f~~~~f~~~~~~~-----~~p~vLdW~I~ 233 (296)
+++|+|++|||++||.+ ++.|.+++...+.... ...+|++|||+|+ ||. ++..++.+ .+||+|+|+|.
T Consensus 1 n~~CsG~~CCQt~iP~~~~qv~~~~i~~~~~~~~--~~~~Ck~AFL~d~~~~~---~n~t~p~~~~~~~y~pv~L~W~i~ 75 (103)
T PF08488_consen 1 NSSCSGIGCCQTSIPSGLLQVFNVTIESTDGNNQ--TSNGCKVAFLVDEDWFS---SNITDPEDFHAMGYVPVVLDWFID 75 (103)
T ss_pred CCccCCcceeccCCCCCCceEEEEEeEecCCCcc--cCCCceEEEEecccccc---ccCCChHHhccCCeeEEEEEEEEe
Confidence 36899999999999997 5789999987654321 4578999999999 997 44443322 69999999998
Q ss_pred cCCCCCCCCCCCcCCCCCCceeecCCCCceeEeeC
Q 041671 234 EKNCPDDPNSKVDGCGDNTNCYYSENGKGYRCKCK 268 (296)
Q Consensus 234 ~~~C~~a~~~~~yaC~~nS~C~d~~~g~GY~C~C~ 268 (296)
....... .+++|..+++ .+. ..+|.|.
T Consensus 76 t~~~~~~---~s~~C~~~~~-y~~----~~~C~C~ 102 (103)
T PF08488_consen 76 TSDSSFS---NSLACKNNTE-YSS----SNRCSCS 102 (103)
T ss_pred cCCcCcC---cCccCCCcee-ccC----CCcEeCC
Confidence 5433211 4689986555 111 2388885
No 3
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.78 E-value=1.6e-05 Score=46.17 Aligned_cols=23 Identities=48% Similarity=0.993 Sum_probs=21.0
Q ss_pred ceeEeeCCCCcCCCcc-CCccCcc
Q 041671 262 GYRCKCKQGFQGNPYL-GCVDIDE 284 (296)
Q Consensus 262 GY~C~C~~Gy~GNPYl-GC~didE 284 (296)
+|+|.|.+||+=+|=- .|+||||
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 6999999999988866 9999998
No 4
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=96.97 E-value=0.0005 Score=43.98 Aligned_cols=29 Identities=34% Similarity=1.035 Sum_probs=23.1
Q ss_pred cCCCCCCceeecCCCCceeEeeCCCCcCCCc
Q 041671 246 DGCGDNTNCYYSENGKGYRCKCKQGFQGNPY 276 (296)
Q Consensus 246 yaC~~nS~C~d~~~g~GY~C~C~~Gy~GNPY 276 (296)
..|..|+.|.+... .|.|+|++||+||.|
T Consensus 6 ~~C~~nA~C~~~~~--~~~C~C~~Gy~GdG~ 34 (36)
T PF12947_consen 6 GGCHPNATCTNTGG--SYTCTCKPGYEGDGF 34 (36)
T ss_dssp GGS-TTCEEEE-TT--SEEEEE-CEEECCST
T ss_pred CCCCCCcEeecCCC--CEEeECCCCCccCCc
Confidence 46889999998765 899999999999987
No 5
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=96.13 E-value=0.0038 Score=38.68 Aligned_cols=26 Identities=35% Similarity=0.995 Sum_probs=22.8
Q ss_pred CCCCCCceeecCCCCceeEeeCCCCcC
Q 041671 247 GCGDNTNCYYSENGKGYRCKCKQGFQG 273 (296)
Q Consensus 247 aC~~nS~C~d~~~g~GY~C~C~~Gy~G 273 (296)
.|.++.+|++.. ..+|+|.|.+||.|
T Consensus 5 ~C~n~g~C~~~~-~~~y~C~C~~G~~G 30 (32)
T PF00008_consen 5 PCQNGGTCIDLP-GGGYTCECPPGYTG 30 (32)
T ss_dssp SSTTTEEEEEES-TSEEEEEEBTTEES
T ss_pred cCCCCeEEEeCC-CCCEEeECCCCCcc
Confidence 688889999887 44999999999998
No 6
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=95.19 E-value=0.019 Score=37.70 Aligned_cols=27 Identities=33% Similarity=0.915 Sum_probs=23.1
Q ss_pred cCCCCCCceeecCCCCceeEeeCCCCcCC
Q 041671 246 DGCGDNTNCYYSENGKGYRCKCKQGFQGN 274 (296)
Q Consensus 246 yaC~~nS~C~d~~~g~GY~C~C~~Gy~GN 274 (296)
..|..+..|+|... +|+|.|++||+-+
T Consensus 10 ~~C~~~~~C~N~~G--sy~C~C~~Gy~~~ 36 (42)
T PF07645_consen 10 HNCPENGTCVNTEG--SYSCSCPPGYELN 36 (42)
T ss_dssp SSSSTTSEEEEETT--EEEEEESTTEEEC
T ss_pred CcCCCCCEEEcCCC--CEEeeCCCCcEEC
Confidence 47888999998875 8999999999844
No 7
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=94.85 E-value=0.032 Score=33.95 Aligned_cols=27 Identities=30% Similarity=0.972 Sum_probs=22.4
Q ss_pred cCCCCCCceeecCCCCceeEeeCCCCcCC
Q 041671 246 DGCGDNTNCYYSENGKGYRCKCKQGFQGN 274 (296)
Q Consensus 246 yaC~~nS~C~d~~~g~GY~C~C~~Gy~GN 274 (296)
..|..+..|++... +|+|.|..||.|+
T Consensus 6 ~~C~~~~~C~~~~~--~~~C~C~~g~~g~ 32 (36)
T cd00053 6 NPCSNGGTCVNTPG--SYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCEEecCCC--CeEeECCCCCccc
Confidence 46777788987663 8999999999997
No 8
>smart00181 EGF Epidermal growth factor-like domain.
Probab=94.03 E-value=0.053 Score=33.45 Aligned_cols=25 Identities=28% Similarity=0.979 Sum_probs=20.5
Q ss_pred CCCCCCceeecCCCCceeEeeCCCCcCC
Q 041671 247 GCGDNTNCYYSENGKGYRCKCKQGFQGN 274 (296)
Q Consensus 247 aC~~nS~C~d~~~g~GY~C~C~~Gy~GN 274 (296)
.|..+ .|++.. .+|+|.|..||+||
T Consensus 7 ~C~~~-~C~~~~--~~~~C~C~~g~~g~ 31 (35)
T smart00181 7 PCSNG-TCINTP--GSYTCSCPPGYTGD 31 (35)
T ss_pred CCCCC-EEECCC--CCeEeECCCCCccC
Confidence 57766 898763 38999999999997
No 9
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=92.28 E-value=0.14 Score=32.05 Aligned_cols=26 Identities=31% Similarity=0.958 Sum_probs=20.5
Q ss_pred CCCCCCceeecCCCCceeEeeCCCCc-CC
Q 041671 247 GCGDNTNCYYSENGKGYRCKCKQGFQ-GN 274 (296)
Q Consensus 247 aC~~nS~C~d~~~g~GY~C~C~~Gy~-GN 274 (296)
.|..+..|++... +|.|.|.+||. |.
T Consensus 10 ~C~~~~~C~~~~g--~~~C~C~~g~~~g~ 36 (39)
T smart00179 10 PCQNGGTCVNTVG--SYRCECPPGYTDGR 36 (39)
T ss_pred CcCCCCEeECCCC--CeEeECCCCCccCC
Confidence 5776678986643 79999999998 64
No 10
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=91.93 E-value=0.16 Score=31.21 Aligned_cols=27 Identities=30% Similarity=0.936 Sum_probs=20.9
Q ss_pred cCCCCCCceeecCCCCceeEeeCCCCcCC
Q 041671 246 DGCGDNTNCYYSENGKGYRCKCKQGFQGN 274 (296)
Q Consensus 246 yaC~~nS~C~d~~~g~GY~C~C~~Gy~GN 274 (296)
..|..+..|.+... +|+|.|.+||.|.
T Consensus 9 ~~C~~~~~C~~~~~--~~~C~C~~g~~g~ 35 (38)
T cd00054 9 NPCQNGGTCVNTVG--SYRCSCPPGYTGR 35 (38)
T ss_pred CCcCCCCEeECCCC--CeEeECCCCCcCC
Confidence 35766678886654 7999999999983
No 11
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=86.46 E-value=0.33 Score=23.96 Aligned_cols=11 Identities=36% Similarity=1.192 Sum_probs=8.6
Q ss_pred eEeeCCCCcCC
Q 041671 264 RCKCKQGFQGN 274 (296)
Q Consensus 264 ~C~C~~Gy~GN 274 (296)
+|.|.+||.|-
T Consensus 1 ~C~C~~G~~G~ 11 (13)
T PF12661_consen 1 TCQCPPGWTGP 11 (13)
T ss_dssp EEEE-TTEETT
T ss_pred CccCcCCCcCC
Confidence 59999999984
No 12
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=81.03 E-value=1 Score=28.88 Aligned_cols=27 Identities=26% Similarity=0.835 Sum_probs=19.6
Q ss_pred CCCCCCceeecCCCCceeEeeCCCCcCC
Q 041671 247 GCGDNTNCYYSENGKGYRCKCKQGFQGN 274 (296)
Q Consensus 247 aC~~nS~C~d~~~g~GY~C~C~~Gy~GN 274 (296)
.|-.||.|+....| -+.|+|..||..+
T Consensus 6 ~cP~NA~C~~~~dG-~eecrCllgyk~~ 32 (37)
T PF12946_consen 6 KCPANAGCFRYDDG-SEECRCLLGYKKV 32 (37)
T ss_dssp ---TTEEEEEETTS-EEEEEE-TTEEEE
T ss_pred cCCCCcccEEcCCC-CEEEEeeCCcccc
Confidence 46689999988876 7999999999743
No 13
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=79.78 E-value=1.2 Score=28.39 Aligned_cols=18 Identities=33% Similarity=1.036 Sum_probs=13.7
Q ss_pred ceeecCCCCceeEeeCCCCc
Q 041671 253 NCYYSENGKGYRCKCKQGFQ 272 (296)
Q Consensus 253 ~C~d~~~g~GY~C~C~~Gy~ 272 (296)
.|.+... +|+|.|.+||.
T Consensus 11 ~C~~~~g--~~~C~C~~Gy~ 28 (36)
T PF14670_consen 11 ICVNTPG--SYRCSCPPGYK 28 (36)
T ss_dssp EEEEETT--SEEEE-STTEE
T ss_pred CCccCCC--ceEeECCCCCE
Confidence 5777743 89999999996
No 14
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=78.60 E-value=2.4 Score=44.80 Aligned_cols=28 Identities=43% Similarity=1.060 Sum_probs=23.6
Q ss_pred CCCCceeEeeCCCCcCCCccCCccCcccc
Q 041671 258 ENGKGYRCKCKQGFQGNPYLGCVDIDECL 286 (296)
Q Consensus 258 ~~g~GY~C~C~~Gy~GNPYlGC~didEC~ 286 (296)
..|.-|.|.|.+||.|+.. -|+|.|||.
T Consensus 804 hGgs~y~C~CLPGfsGDG~-~c~dvDeC~ 831 (1289)
T KOG1214|consen 804 HGGSTYSCACLPGFSGDGH-QCTDVDECS 831 (1289)
T ss_pred cCCceEEEeecCCccCCcc-ccccccccC
Confidence 3445699999999999988 688889995
No 15
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=76.46 E-value=4.1 Score=32.03 Aligned_cols=42 Identities=26% Similarity=0.637 Sum_probs=30.0
Q ss_pred CcEEEEEEEecCCCCCCCCCCCcCCCCCCceeecCCCCceeEeeCCCCcC
Q 041671 224 SNVTIEWVVEEKNCPDDPNSKVDGCGDNTNCYYSENGKGYRCKCKQGFQG 273 (296)
Q Consensus 224 ~p~vLdW~I~~~~C~~a~~~~~yaC~~nS~C~d~~~g~GY~C~C~~Gy~G 273 (296)
.-..+.|....+.|+.- ..|..++.|. .. ..-.|+|.+||+-
T Consensus 67 ~~W~~~~~~p~d~Cd~y-----~~CG~~g~C~-~~--~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 67 QSWSVFWSAPKDQCDVY-----GFCGPNGICN-SN--NSPKCSCLPGFEP 108 (110)
T ss_pred CcEEEEEEecccCCCCc-----cccCCccEeC-CC--CCCceECCCCcCC
Confidence 44566777777789654 2699999993 22 2456999999985
No 16
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=68.97 E-value=4.9 Score=42.60 Aligned_cols=39 Identities=33% Similarity=0.855 Sum_probs=30.2
Q ss_pred CCCCCCceeecCCCCceeEeeCCCCcCCCccCCccCccccC
Q 041671 247 GCGDNTNCYYSENGKGYRCKCKQGFQGNPYLGCVDIDECLD 287 (296)
Q Consensus 247 aC~~nS~C~d~~~g~GY~C~C~~Gy~GNPYlGC~didEC~~ 287 (296)
.|.++..|+..+. ..|.|.|+.||+|.|- -|.|+|||..
T Consensus 701 ~cdt~a~C~pg~~-~~~tcecs~g~~gdgr-~c~d~~eca~ 739 (1289)
T KOG1214|consen 701 MCDTTARCHPGTG-VDYTCECSSGYQGDGR-NCVDENECAT 739 (1289)
T ss_pred ccCCCccccCCCC-cceEEEEeeccCCCCC-CCCChhhhcc
Confidence 4555667765543 4799999999999986 6889999953
No 17
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=67.96 E-value=4.8 Score=24.83 Aligned_cols=24 Identities=29% Similarity=0.765 Sum_probs=18.8
Q ss_pred CCCCCCceeecCCCCceeEeeCCCCcCC
Q 041671 247 GCGDNTNCYYSENGKGYRCKCKQGFQGN 274 (296)
Q Consensus 247 aC~~nS~C~d~~~g~GY~C~C~~Gy~GN 274 (296)
.|..|-.|... ..+|.|.+||.|.
T Consensus 7 ~C~~~G~C~~~----~g~C~C~~g~~G~ 30 (32)
T PF07974_consen 7 ICSGHGTCVSP----CGRCVCDSGYTGP 30 (32)
T ss_pred ccCCCCEEeCC----CCEEECCCCCcCC
Confidence 57777788543 5789999999984
No 18
>PLN03222 rapid alkalinization factor 23-like protein; Provisional
Probab=60.41 E-value=7.7 Score=31.14 Aligned_cols=26 Identities=46% Similarity=1.110 Sum_probs=20.5
Q ss_pred CCCceeEeeCCCCcCCCcc-CCccCccc
Q 041671 259 NGKGYRCKCKQGFQGNPYL-GCVDIDEC 285 (296)
Q Consensus 259 ~g~GY~C~C~~Gy~GNPYl-GC~didEC 285 (296)
.|..|. +|..|=+-|||. ||.-|.-|
T Consensus 91 rG~SYy-nC~~~~~ANPY~RGCs~ITrC 117 (119)
T PLN03222 91 RGASYY-NCRRGAQANPYSRGCSAITRC 117 (119)
T ss_pred CCCCcc-ccCCCCCCCCCCCCchhhccc
Confidence 344555 677788999999 99999877
No 19
>PF15240 Pro-rich: Proline-rich
Probab=58.94 E-value=6.4 Score=34.19 Aligned_cols=18 Identities=44% Similarity=0.501 Sum_probs=13.6
Q ss_pred ChHHHHHHHHHHhhhhcc
Q 041671 1 MLLLWLMLLLLSSLAAAS 18 (296)
Q Consensus 1 m~~~~~~~lll~~~~a~~ 18 (296)
||++||.+.||+|.+|-.
T Consensus 1 MLlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQS 18 (179)
T ss_pred ChhHHHHHHHHHhhhccc
Confidence 888888887777776644
No 20
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=58.86 E-value=4.2 Score=44.43 Aligned_cols=26 Identities=42% Similarity=1.091 Sum_probs=20.6
Q ss_pred ceeecCCCCceeE-eeCCCCcCCCcc----CCc
Q 041671 253 NCYYSENGKGYRC-KCKQGFQGNPYL----GCV 280 (296)
Q Consensus 253 ~C~d~~~g~GY~C-~C~~Gy~GNPYl----GC~ 280 (296)
.|.|.+. ||.| +|.+||.|||-+ ||+
T Consensus 877 ~CqD~T~--G~~CdrCl~GyyGdP~lg~g~~Cr 907 (1758)
T KOG0994|consen 877 DCQDSTT--GHSCDRCLDGYYGDPRLGSGIGCR 907 (1758)
T ss_pred ccccccc--ccchhhhhccccCCcccCCCCCCC
Confidence 3555554 8998 899999999998 675
No 21
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=58.62 E-value=7.5 Score=43.66 Aligned_cols=28 Identities=43% Similarity=1.121 Sum_probs=22.9
Q ss_pred cCCCCCCceeecCCCCceeEeeCCCCcCCC
Q 041671 246 DGCGDNTNCYYSENGKGYRCKCKQGFQGNP 275 (296)
Q Consensus 246 yaC~~nS~C~d~~~g~GY~C~C~~Gy~GNP 275 (296)
..|.+|+.|.--.+ ||+|.|++||.|-=
T Consensus 1245 ~pC~nng~C~srEg--gYtCeCrpg~tGeh 1272 (2531)
T KOG4289|consen 1245 GPCGNNGRCRSREG--GYTCECRPGFTGEH 1272 (2531)
T ss_pred CCCCCCCceEEecC--ceeEEecCCccccc
Confidence 36888999975544 99999999999964
No 22
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.37 E-value=7.1 Score=36.21 Aligned_cols=47 Identities=21% Similarity=0.618 Sum_probs=31.3
Q ss_pred EEEEEEEecCCCCCCCC--CCCcCCCCCCceeecCCCCceeEeeCCCCcCC
Q 041671 226 VTIEWVVEEKNCPDDPN--SKVDGCGDNTNCYYSENGKGYRCKCKQGFQGN 274 (296)
Q Consensus 226 ~vLdW~I~~~~C~~a~~--~~~yaC~~nS~C~d~~~g~GY~C~C~~Gy~GN 274 (296)
-.-.|++....|.+.-. +...-|+.+-.|+|... .|.|.+++||++.
T Consensus 222 CkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteG--Sf~C~dk~Gy~~g 270 (350)
T KOG4260|consen 222 CKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEG--SFKCEDKEGYKKG 270 (350)
T ss_pred hcccceecccccccHHHHhcCCCCCChhheeecCCC--ceEecccccccCC
Confidence 34578887666643210 01234668888987654 7999999999985
No 23
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=57.86 E-value=12 Score=44.27 Aligned_cols=37 Identities=27% Similarity=0.644 Sum_probs=20.8
Q ss_pred CCCCCCceeecCCCCceeEeeCCCCcCCCccCCccCcccc
Q 041671 247 GCGDNTNCYYSENGKGYRCKCKQGFQGNPYLGCVDIDECL 286 (296)
Q Consensus 247 aC~~nS~C~d~~~g~GY~C~C~~Gy~GNPYlGC~didEC~ 286 (296)
-|..--.|... +.||.|+|+.||.|-=-- =.+|+||.
T Consensus 3910 PC~~GgtCip~--~n~f~CnC~~gyTG~~Ce-~~Gi~eCs 3946 (4289)
T KOG1219|consen 3910 PCLTGGTCIPF--YNGFLCNCPNGYTGKRCE-ARGISECS 3946 (4289)
T ss_pred CCCCCCEEEec--CCCeeEeCCCCccCceee-cccccccc
Confidence 34433445332 237888888888776432 00288884
No 24
>PLN03221 rapid alkalinization factor 23; Provisional
Probab=57.24 E-value=9.5 Score=31.29 Aligned_cols=27 Identities=44% Similarity=1.042 Sum_probs=20.9
Q ss_pred CCCceeEeeCCCCcCCCcc-CCccCcccc
Q 041671 259 NGKGYRCKCKQGFQGNPYL-GCVDIDECL 286 (296)
Q Consensus 259 ~g~GY~C~C~~Gy~GNPYl-GC~didEC~ 286 (296)
.|..|. +|..+=+-|||. ||.-|.-|.
T Consensus 109 rG~SYy-nC~~~~pANPY~RGCs~ITRCr 136 (137)
T PLN03221 109 RGASYY-NCRRGAQANPYSRGCSAITRCR 136 (137)
T ss_pred CCCCcc-ccCCCCCCCCCCCCcccccccC
Confidence 344554 677788999999 999998773
No 25
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=56.58 E-value=7.7 Score=34.29 Aligned_cols=21 Identities=29% Similarity=0.766 Sum_probs=16.4
Q ss_pred ceeecCCCCceeEeeCCCCcCCC
Q 041671 253 NCYYSENGKGYRCKCKQGFQGNP 275 (296)
Q Consensus 253 ~C~d~~~g~GY~C~C~~Gy~GNP 275 (296)
.|.+.. | .|.|+|..||..+|
T Consensus 200 ~C~~~~-g-~~~c~c~~g~~~~~ 220 (224)
T cd01475 200 VCISTP-G-SYLCACTEGYALLE 220 (224)
T ss_pred eEEcCC-C-CEEeECCCCccCCC
Confidence 576543 3 69999999999876
No 26
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=48.47 E-value=8.4 Score=16.32 Aligned_cols=6 Identities=67% Similarity=1.785 Sum_probs=4.4
Q ss_pred cCCCCC
Q 041671 38 PYPFGI 43 (296)
Q Consensus 38 pYPFGi 43 (296)
||-||+
T Consensus 3 py~fgl 8 (8)
T PF08261_consen 3 PYSFGL 8 (8)
T ss_pred cccccC
Confidence 788875
No 27
>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development.
Probab=46.45 E-value=14 Score=26.84 Aligned_cols=24 Identities=38% Similarity=0.844 Sum_probs=19.2
Q ss_pred ceeEeeCCCCcCCCcc-CCccCcccc
Q 041671 262 GYRCKCKQGFQGNPYL-GCVDIDECL 286 (296)
Q Consensus 262 GY~C~C~~Gy~GNPYl-GC~didEC~ 286 (296)
.|. +|..+=.=|||- ||.-|.-|.
T Consensus 41 ~~~-~c~~~~paNpY~RGC~~~~rCr 65 (66)
T PF05498_consen 41 SYY-NCCPRQPANPYSRGCSKITRCR 65 (66)
T ss_pred CCc-ccCCCCCCCCCCCCCCccccCC
Confidence 344 667778899999 999998884
No 28
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=39.73 E-value=22 Score=29.26 Aligned_cols=35 Identities=23% Similarity=0.629 Sum_probs=24.0
Q ss_pred CCCCCCCCCCcCCCCCCceeecCCCCceeEeeCCCCcCC
Q 041671 236 NCPDDPNSKVDGCGDNTNCYYSENGKGYRCKCKQGFQGN 274 (296)
Q Consensus 236 ~C~~a~~~~~yaC~~nS~C~d~~~g~GY~C~C~~Gy~GN 274 (296)
.|++.- +.-|.+. .|.-...-..+.|+|..||.|.
T Consensus 44 ~Cp~ey---~~YClHG-~C~yI~dl~~~~CrC~~GYtGe 78 (139)
T PHA03099 44 LCGPEG---DGYCLHG-DCIHARDIDGMYCRCSHGYTGI 78 (139)
T ss_pred cCChhh---CCEeECC-EEEeeccCCCceeECCCCcccc
Confidence 465542 2356533 7766555568999999999997
No 29
>PF14380 WAK_assoc: Wall-associated receptor kinase C-terminal
Probab=39.55 E-value=41 Score=25.61 Aligned_cols=40 Identities=25% Similarity=0.802 Sum_probs=24.0
Q ss_pred CCcEEEEEEEecCCCCCCCCCCCcCCC-CCCceeecCCCCceeEeeCCC
Q 041671 223 SSNVTIEWVVEEKNCPDDPNSKVDGCG-DNTNCYYSENGKGYRCKCKQG 270 (296)
Q Consensus 223 ~~p~vLdW~I~~~~C~~a~~~~~yaC~-~nS~C~d~~~g~GY~C~C~~G 270 (296)
....+|+|.+....|. +|. ..-.|.-.....-..|.|++|
T Consensus 53 ~~GF~L~w~~~~~~C~--------~C~~SgG~Cgy~~~~~~f~C~C~dg 93 (94)
T PF14380_consen 53 KKGFELEWNADSGDCR--------ECEASGGRCGYDSNSEQFTCFCSDG 93 (94)
T ss_pred hcCcEEEEeCCCCcCc--------ChhcCCCEeCCCCCCceEEEECCCC
Confidence 4678999998665663 233 333342111224678999886
No 30
>PHA02887 EGF-like protein; Provisional
Probab=35.39 E-value=29 Score=28.17 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=20.0
Q ss_pred CCCCCCceeecCCCCceeEeeCCCCcCC
Q 041671 247 GCGDNTNCYYSENGKGYRCKCKQGFQGN 274 (296)
Q Consensus 247 aC~~nS~C~d~~~g~GY~C~C~~Gy~GN 274 (296)
-|. |-.|.-...-....|+|.+||.|-
T Consensus 93 YCi-HG~C~yI~dL~epsCrC~~GYtG~ 119 (126)
T PHA02887 93 FCI-NGECMNIIDLDEKFCICNKGYTGI 119 (126)
T ss_pred Eee-CCEEEccccCCCceeECCCCcccC
Confidence 464 557765555568999999999985
No 31
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=27.70 E-value=28 Score=21.91 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=9.4
Q ss_pred ceeEeeCCCCc
Q 041671 262 GYRCKCKQGFQ 272 (296)
Q Consensus 262 GY~C~C~~Gy~ 272 (296)
.+.|.|.+||-
T Consensus 17 ~~~C~CPeGyI 27 (34)
T PF09064_consen 17 PGQCFCPEGYI 27 (34)
T ss_pred CCceeCCCceE
Confidence 66999999984
No 32
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=26.15 E-value=46 Score=39.89 Aligned_cols=28 Identities=36% Similarity=0.971 Sum_probs=20.4
Q ss_pred CCCCCCceeecCCCCceeEeeCCCCcCCC
Q 041671 247 GCGDNTNCYYSENGKGYRCKCKQGFQGNP 275 (296)
Q Consensus 247 aC~~nS~C~d~~~g~GY~C~C~~Gy~GNP 275 (296)
-|..--.|.....| ||.|+|..-|.||=
T Consensus 3871 pCqhgG~C~~~~~g-gy~CkCpsqysG~~ 3898 (4289)
T KOG1219|consen 3871 PCQHGGTCISQPKG-GYKCKCPSQYSGNH 3898 (4289)
T ss_pred cccCCCEecCCCCC-ceEEeCcccccCcc
Confidence 45544566544444 99999999999983
No 33
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=25.66 E-value=50 Score=37.64 Aligned_cols=22 Identities=36% Similarity=1.016 Sum_probs=16.7
Q ss_pred CceeecCCCCceeEeeCCCCcC
Q 041671 252 TNCYYSENGKGYRCKCKQGFQG 273 (296)
Q Consensus 252 S~C~d~~~g~GY~C~C~~Gy~G 273 (296)
..|+-++...||.|.|..||.|
T Consensus 1728 g~Cv~sp~a~GY~C~C~~g~~G 1749 (2531)
T KOG4289|consen 1728 GTCVRSPGAHGYTCECPPGYTG 1749 (2531)
T ss_pred ceeecCCCCCceeEECCCcccC
Confidence 5566555557999999988876
No 34
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=22.00 E-value=77 Score=30.20 Aligned_cols=37 Identities=41% Similarity=0.999 Sum_probs=26.1
Q ss_pred CCCCCceeecCCCCceeEeeCCCCcCCCccCCccCcccc
Q 041671 248 CGDNTNCYYSENGKGYRCKCKQGFQGNPYLGCVDIDECL 286 (296)
Q Consensus 248 C~~nS~C~d~~~g~GY~C~C~~Gy~GNPYlGC~didEC~ 286 (296)
|..+-.|.+..+ .|+|+|..||.|..-..|.+.++|.
T Consensus 280 c~~~~~C~~~~~--~~~C~C~~g~~g~~~~~~~~~~~C~ 316 (487)
T KOG1217|consen 280 CPNGGTCVNVPG--SYRCTCPPGFTGRLCTECVDVDECS 316 (487)
T ss_pred cCCCCeeecCCC--cceeeCCCCCCCCCCcccccccccc
Confidence 656667766543 2999999999999853355556663
No 35
>PF05953 Allatostatin: Allatostatin; InterPro: IPR010276 This family consists of allatostatins, bombystatins, helicostatins, cydiastatins and schistostatin from several insect species. Allatostatins (ASTs) of the Tyr/Phe-Xaa-Phe-Gly Leu/Ile-NH2 family are a group of insect neuropeptides that inhibit juvenile hormone biosynthesis by the corpora allata [].; GO: 0005184 neuropeptide hormone activity
Probab=21.94 E-value=45 Score=15.70 Aligned_cols=7 Identities=43% Similarity=1.075 Sum_probs=5.3
Q ss_pred cCCCCCC
Q 041671 38 PYPFGIN 44 (296)
Q Consensus 38 pYPFGig 44 (296)
+|-||+|
T Consensus 5 ~Y~FGLG 11 (11)
T PF05953_consen 5 MYSFGLG 11 (11)
T ss_pred ccccCcC
Confidence 4888886
No 36
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=21.06 E-value=79 Score=21.03 Aligned_cols=21 Identities=29% Similarity=0.827 Sum_probs=15.7
Q ss_pred cCCCCCCceeecCCCCceeEeeCCCCc
Q 041671 246 DGCGDNTNCYYSENGKGYRCKCKQGFQ 272 (296)
Q Consensus 246 yaC~~nS~C~d~~~g~GY~C~C~~Gy~ 272 (296)
..|..+|.|.+ -+|.|.+||.
T Consensus 26 ~qC~~~s~C~~------g~C~C~~g~~ 46 (52)
T PF01683_consen 26 EQCIGGSVCVN------GRCQCPPGYV 46 (52)
T ss_pred CCCCCcCEEcC------CEeECCCCCE
Confidence 46777788843 4899999984
No 37
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=20.73 E-value=94 Score=20.66 Aligned_cols=15 Identities=47% Similarity=1.196 Sum_probs=10.2
Q ss_pred ceeE-eeCCCCcCCCc
Q 041671 262 GYRC-KCKQGFQGNPY 276 (296)
Q Consensus 262 GY~C-~C~~Gy~GNPY 276 (296)
|-+| +|.+||.|+|.
T Consensus 29 G~~C~~C~~g~~~~~~ 44 (50)
T cd00055 29 GRRCDRCAPGYYGLPS 44 (50)
T ss_pred CCCCCCCCCCCccCCC
Confidence 4444 67777777775
Done!