BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041672
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SB61|Y4466_ARATH ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana
GN=At4g24660 PE=1 SV=1
Length = 220
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%), Gaps = 3/61 (4%)
Query: 13 VRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKE---IGCDA 69
+RY+ECLKNHA IGG A DGC EFMPSGE+G++++LKC+AC CHRNFHRKE IG A
Sbjct: 47 IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRA 106
Query: 70 H 70
H
Sbjct: 107 H 107
>sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana
GN=At5g65410 PE=1 SV=1
Length = 279
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 45/53 (84%)
Query: 13 VRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEI 65
R++ECLKN A IGG A DGCGEFMP+G EG+I++LKC+AC CHRNFHRKE+
Sbjct: 73 FRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKEL 125
>sp|Q9SEZ1|HB29_ARATH Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1
Length = 242
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 70/135 (51%), Gaps = 22/135 (16%)
Query: 13 VRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIE--SLKCSACNCHRNFHRKEIGCDAH 70
V YKECLKNHAA +GG A DGCGEFMPS S + SL+C+AC CHRNFHR++ + +
Sbjct: 29 VCYKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFHRRDPSENLN 88
Query: 71 YHHLHQQAMMMLSGNSG------------SAHSASDEKVERRGVVVGRPAPADDD----- 113
+ L + SG S ++++ + G P P+D D
Sbjct: 89 F--LTAPPISSPSGTESPPSRHVSSPVPCSYYTSAPPHHVILSLSSGFPGPSDQDPTVVR 146
Query: 114 -DHQKRMMMRKRFRT 127
++ R MRKR RT
Sbjct: 147 SENSSRGAMRKRTRT 161
>sp|B7K1G5|MNMA_CYAP8 tRNA-specific 2-thiouridylase MnmA OS=Cyanothece sp. (strain PCC
8801) GN=mnmA PE=3 SV=1
Length = 349
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 37 FMPSGEEGSIESLKCSACN------CHRNFHRKEIGCD 68
++ SG E I L CS CN N+ R+E+GCD
Sbjct: 77 YLVSGYEAGITPLPCSQCNRAVKFGPMLNYARQELGCD 114
>sp|Q18CD2|SYP1_CLOD6 Proline--tRNA ligase 1 OS=Clostridium difficile (strain 630)
GN=proS1 PE=3 SV=1
Length = 571
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 23 AAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKE 64
+ AIGGS + EFM E G E + CS C+ N R E
Sbjct: 199 SGAIGGSTS---AEFMVKSEVGEDEVVFCSGCDYAANVERAE 237
>sp|A6LPP0|SYP_CLOB8 Proline--tRNA ligase OS=Clostridium beijerinckii (strain ATCC 51743
/ NCIMB 8052) GN=proS PE=3 SV=1
Length = 570
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 17 ECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHR 62
+C+ + AIGGS + EFM E G + + CS CN N +
Sbjct: 193 KCVAADSGAIGGSNS---AEFMVKSEVGEDDVVFCSECNYAANIEK 235
>sp|B0THP0|SYP_HELMI Proline--tRNA ligase OS=Heliobacterium modesticaldum (strain ATCC
51547 / Ice1) GN=proS PE=3 SV=1
Length = 575
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 AAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKE 64
AIGG T G EFM E G E + C AC+ N + E
Sbjct: 200 GAIGG--TGGSHEFMVLAESGEAEIVYCDACDYAANTEKAE 238
>sp|B2TIF5|SYP_CLOBB Proline--tRNA ligase OS=Clostridium botulinum (strain Eklund 17B /
Type B) GN=proS PE=3 SV=1
Length = 570
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 17 ECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHR 62
+C++ + AIGGS + EFM E G + + C+ CN N +
Sbjct: 193 KCVEADSGAIGGSNS---AEFMVKSEVGEDDIVFCTECNYAANIEK 235
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,484,967
Number of Sequences: 539616
Number of extensions: 1963784
Number of successful extensions: 4761
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4755
Number of HSP's gapped (non-prelim): 17
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)