Query 041672
Match_columns 127
No_of_seqs 117 out of 185
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 16:11:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fnf_X Putative RAS effector N 41.5 14 0.00047 23.9 1.9 31 28-64 35-67 (72)
2 1faq_A RAF-1; transferase, ser 40.4 14 0.00047 21.6 1.6 29 29-64 15-45 (52)
3 1k81_A EIF-2-beta, probable tr 38.1 7.8 0.00027 22.5 0.3 14 46-59 19-32 (36)
4 1nee_A EIF-2-beta, probable tr 37.0 10 0.00035 27.9 0.8 16 45-60 120-135 (138)
5 3uej_A NPKC-delta, protein kin 29.8 20 0.00068 22.1 1.2 33 29-64 21-55 (65)
6 2enz_A NPKC-theta, protein kin 28.5 39 0.0013 20.8 2.4 33 29-64 24-58 (65)
7 2g2k_A EIF-5, eukaryotic trans 28.5 16 0.00056 27.9 0.7 16 46-61 117-132 (170)
8 3gj5_B Nuclear pore complex pr 27.8 21 0.00071 20.8 1.0 12 45-56 18-29 (34)
9 3cw2_K Translation initiation 27.0 20 0.00069 26.3 1.0 16 45-60 121-136 (139)
10 2e9h_A EIF-5, eukaryotic trans 26.4 16 0.00056 27.5 0.4 17 45-61 123-139 (157)
11 3gj3_B Nuclear pore complex pr 25.7 24 0.00081 20.4 0.9 11 45-55 18-28 (33)
12 1rfh_A RAS association (ralgds 25.7 27 0.00092 21.5 1.2 28 29-62 23-52 (59)
13 2d74_B Translation initiation 25.4 29 0.00098 25.9 1.6 16 45-60 122-137 (148)
14 2ebv_A Nuclear pore complex pr 24.2 41 0.0014 21.6 1.9 13 44-56 41-53 (57)
15 2ebr_A Nuclear pore complex pr 22.0 34 0.0011 21.1 1.2 13 44-56 21-33 (47)
16 2yuu_A NPKC-delta, protein kin 21.5 49 0.0017 21.3 2.0 35 28-65 28-64 (83)
17 2enn_A NPKC-theta, protein kin 20.1 49 0.0017 21.1 1.7 34 29-65 35-70 (77)
No 1
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=41.50 E-value=14 Score=23.89 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=22.1
Q ss_pred CccccCccccccCCCCCCccccccccc--cccccccccc
Q 041672 28 GSATDGCGEFMPSGEEGSIESLKCSAC--NCHRNFHRKE 64 (127)
Q Consensus 28 ghavDGCgEFmpsg~~gt~~aL~CaAC--gCHRnFHRre 64 (127)
...=|=|++|| .. ..++|..| .||+.=+.+.
T Consensus 35 pt~C~~C~~~l--~~----qG~kC~~C~~~cHkkC~~~V 67 (72)
T 2fnf_X 35 PGWCDLCGREV--LR----QALRCANCKFTCHSECRSLI 67 (72)
T ss_dssp CCBCTTTSSBC--SS----CCEECTTSSCEECTGGGGGC
T ss_pred CcchhhhhHHH--Hh----CcCccCCCCCeechhhhccC
Confidence 34457899999 33 46999999 5777665544
No 2
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=40.37 E-value=14 Score=21.59 Aligned_cols=29 Identities=24% Similarity=0.630 Sum_probs=20.0
Q ss_pred ccccCccccccCCCCCCcccccccccc--ccccccccc
Q 041672 29 SATDGCGEFMPSGEEGSIESLKCSACN--CHRNFHRKE 64 (127)
Q Consensus 29 havDGCgEFmpsg~~gt~~aL~CaACg--CHRnFHRre 64 (127)
..=|=|++||- ..++|..|+ ||+.-+.+.
T Consensus 15 t~C~~C~~~l~-------qG~~C~~C~~~~H~~C~~~v 45 (52)
T 1faq_A 15 AFCDICQKFLL-------NGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp EECTTSSSEEC-------SEEECTTTTCCBCSTTSSSS
T ss_pred cCCCCcccccc-------cCCEeCCCCCeEChhHHhhC
Confidence 33467899985 379999985 666655543
No 3
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=38.09 E-value=7.8 Score=22.52 Aligned_cols=14 Identities=43% Similarity=0.835 Sum_probs=10.6
Q ss_pred cccccccccccccc
Q 041672 46 IESLKCSACNCHRN 59 (127)
Q Consensus 46 ~~aL~CaACgCHRn 59 (127)
.-.|+|.|||=.|.
T Consensus 19 ~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 19 VHLLKCMACGAIRP 32 (36)
T ss_dssp EEEEEEETTTEEEE
T ss_pred cEEEEhhcCCCccc
Confidence 34789999996654
No 4
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=36.99 E-value=10 Score=27.93 Aligned_cols=16 Identities=38% Similarity=0.764 Sum_probs=12.5
Q ss_pred Cccccccccccccccc
Q 041672 45 SIESLKCSACNCHRNF 60 (127)
Q Consensus 45 t~~aL~CaACgCHRnF 60 (127)
..-.|+|.|||-+|..
T Consensus 120 r~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 120 RISLLKCEACGAKAPL 135 (138)
T ss_dssp TTTEEECSTTSCCCCS
T ss_pred CeEEEEccCCCCCccc
Confidence 3457999999988764
No 5
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=29.83 E-value=20 Score=22.09 Aligned_cols=33 Identities=27% Similarity=0.542 Sum_probs=21.7
Q ss_pred ccccCccccccCCCCCCcccccccccc--ccccccccc
Q 041672 29 SATDGCGEFMPSGEEGSIESLKCSACN--CHRNFHRKE 64 (127)
Q Consensus 29 havDGCgEFmpsg~~gt~~aL~CaACg--CHRnFHRre 64 (127)
..=|=|++||-.-. ...++|..|+ ||+.-+.+.
T Consensus 21 t~C~~C~~~l~Gl~---~qg~~C~~C~~~~Hk~C~~~v 55 (65)
T 3uej_A 21 TFCDHCGSLLWGLV---KQGLKCEDCGMNVHHKCREKV 55 (65)
T ss_dssp CBCTTTCCBCCSSS---SCEEEETTTCCEECHHHHTTS
T ss_pred CcccccChhhhccC---ceeeECCCCCCeEchhHhhhC
Confidence 34477999996522 2479999986 666555443
No 6
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=28.49 E-value=39 Score=20.76 Aligned_cols=33 Identities=30% Similarity=0.594 Sum_probs=23.0
Q ss_pred ccccCccccccCCCCCCccccccccc--cccccccccc
Q 041672 29 SATDGCGEFMPSGEEGSIESLKCSAC--NCHRNFHRKE 64 (127)
Q Consensus 29 havDGCgEFmpsg~~gt~~aL~CaAC--gCHRnFHRre 64 (127)
..=|=|++||-... ..+++|..| .||+.-+.+.
T Consensus 24 t~C~~C~~~l~Gl~---~qg~~C~~C~~~~Hk~C~~~v 58 (65)
T 2enz_A 24 TFCEHCGTLLWGLA---RQGLKCDACGMNVHHRCQTKV 58 (65)
T ss_dssp CBCSSSCCBCCCSS---SCSEEESSSCCEECTTTTTTS
T ss_pred cCchhcChhheecC---CcccccCCCCCccCHhHHhhC
Confidence 44577999996422 257999999 4777766654
No 7
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=28.45 E-value=16 Score=27.89 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=12.7
Q ss_pred cccccccccccccccc
Q 041672 46 IESLKCSACNCHRNFH 61 (127)
Q Consensus 46 ~~aL~CaACgCHRnFH 61 (127)
.-.|+|.|||.+|.-.
T Consensus 117 ~~~l~C~ACGa~~~V~ 132 (170)
T 2g2k_A 117 TIGNSCKACGYRGMLD 132 (170)
T ss_dssp EEEEEETTTCCCCCSC
T ss_pred EEEEEccccCCccccc
Confidence 4579999999887654
No 8
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=27.83 E-value=21 Score=20.81 Aligned_cols=12 Identities=42% Similarity=0.852 Sum_probs=9.5
Q ss_pred Cccccccccccc
Q 041672 45 SIESLKCSACNC 56 (127)
Q Consensus 45 t~~aL~CaACgC 56 (127)
..++++|.||.-
T Consensus 18 ~~~~~kC~aCet 29 (34)
T 3gj5_B 18 KADSTKCIACES 29 (34)
T ss_dssp CSSCSBCTTTCC
T ss_pred ccccCEEcccCC
Confidence 457899999963
No 9
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=26.98 E-value=20 Score=26.34 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=7.0
Q ss_pred Cccccccccccccccc
Q 041672 45 SIESLKCSACNCHRNF 60 (127)
Q Consensus 45 t~~aL~CaACgCHRnF 60 (127)
..-.|+|.|||-+|..
T Consensus 121 r~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 121 KSWYIVCLACGAQTPV 136 (139)
T ss_dssp STTTSSCCC-------
T ss_pred CeEEEEecCCCCCCcc
Confidence 3458999999988753
No 10
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.41 E-value=16 Score=27.54 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=13.0
Q ss_pred Ccccccccccccccccc
Q 041672 45 SIESLKCSACNCHRNFH 61 (127)
Q Consensus 45 t~~aL~CaACgCHRnFH 61 (127)
-.-.|+|.|||-+|..-
T Consensus 123 r~~~l~C~ACGa~~~V~ 139 (157)
T 2e9h_A 123 QTIGNSCKACGYRGMLD 139 (157)
T ss_dssp TEEEEECSSSCCEEECC
T ss_pred CEEEEEccCCCCCCccc
Confidence 34579999999887654
No 11
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=25.68 E-value=24 Score=20.36 Aligned_cols=11 Identities=45% Similarity=0.984 Sum_probs=9.0
Q ss_pred Ccccccccccc
Q 041672 45 SIESLKCSACN 55 (127)
Q Consensus 45 t~~aL~CaACg 55 (127)
.+++++|.||.
T Consensus 18 ~~~~~kC~aC~ 28 (33)
T 3gj3_B 18 KPEAVKCVACE 28 (33)
T ss_dssp CTTCSBCTTTC
T ss_pred ccccCEEcccC
Confidence 45789999996
No 12
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=25.67 E-value=27 Score=21.45 Aligned_cols=28 Identities=29% Similarity=0.719 Sum_probs=19.2
Q ss_pred ccccCccccccCCCCCCccccccccc--cccccccc
Q 041672 29 SATDGCGEFMPSGEEGSIESLKCSAC--NCHRNFHR 62 (127)
Q Consensus 29 havDGCgEFmpsg~~gt~~aL~CaAC--gCHRnFHR 62 (127)
..=|=|++|| .. ..++|..| .||+.=+.
T Consensus 23 t~C~~C~~~i--~k----qg~kC~~C~~~cH~kC~~ 52 (59)
T 1rfh_A 23 GWCDLCGREV--LR----QALRCANCKFTCHSECRS 52 (59)
T ss_dssp EECTTTCSEE--CS----CCEECTTTSCEECHHHHT
T ss_pred eEchhcchhh--hh----CccEeCCCCCeEehhhhh
Confidence 4457899999 33 46999998 46654443
No 13
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=25.43 E-value=29 Score=25.87 Aligned_cols=16 Identities=31% Similarity=0.675 Sum_probs=12.6
Q ss_pred Cccccccccccccccc
Q 041672 45 SIESLKCSACNCHRNF 60 (127)
Q Consensus 45 t~~aL~CaACgCHRnF 60 (127)
..-.|+|.|||-.|.-
T Consensus 122 r~~~l~C~ACGa~~~V 137 (148)
T 2d74_B 122 RFHFLKCEACGAETPI 137 (148)
T ss_dssp SSBCCCCSSSCCCCCC
T ss_pred CEEEEEecCCCCCccc
Confidence 3458999999988764
No 14
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.19 E-value=41 Score=21.63 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=10.0
Q ss_pred CCccccccccccc
Q 041672 44 GSIESLKCSACNC 56 (127)
Q Consensus 44 gt~~aL~CaACgC 56 (127)
...++++|.||+-
T Consensus 41 N~a~~~kC~ACet 53 (57)
T 2ebv_A 41 NNAEDNKCVSCMS 53 (57)
T ss_dssp CCSSCSBCSSSCC
T ss_pred CccCCceeeEcCC
Confidence 3467899999973
No 15
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.02 E-value=34 Score=21.14 Aligned_cols=13 Identities=38% Similarity=0.790 Sum_probs=10.1
Q ss_pred CCccccccccccc
Q 041672 44 GSIESLKCSACNC 56 (127)
Q Consensus 44 gt~~aL~CaACgC 56 (127)
...++++|.||+-
T Consensus 21 N~a~~~kC~aC~~ 33 (47)
T 2ebr_A 21 NKADSTKCLACES 33 (47)
T ss_dssp CCSSCSBCSSSCC
T ss_pred CcCCcceecCcCC
Confidence 3467999999974
No 16
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.55 E-value=49 Score=21.31 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=23.8
Q ss_pred CccccCccccccCCCCCCccccccccc--ccccccccccc
Q 041672 28 GSATDGCGEFMPSGEEGSIESLKCSAC--NCHRNFHRKEI 65 (127)
Q Consensus 28 ghavDGCgEFmpsg~~gt~~aL~CaAC--gCHRnFHRre~ 65 (127)
...=|=|++||-... ..+++|..| .||+.-+.+..
T Consensus 28 pt~C~~C~~~lwGl~---kqg~~C~~C~~~~Hk~C~~~v~ 64 (83)
T 2yuu_A 28 PTFCSVCKDFVWGLN---KQGYKCRQCNAAIHKKCIDKII 64 (83)
T ss_dssp CCCCSSSCCCCCSSS---CCEEEETTTCCEECTTGGGTCC
T ss_pred CcChhhcChhhcccc---ccccccCCcCCeeChhhhhhCC
Confidence 344578999996522 247999998 47777666643
No 17
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=20.11 E-value=49 Score=21.14 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=23.7
Q ss_pred ccccCccccccCCCCCCccccccccc--ccccccccccc
Q 041672 29 SATDGCGEFMPSGEEGSIESLKCSAC--NCHRNFHRKEI 65 (127)
Q Consensus 29 havDGCgEFmpsg~~gt~~aL~CaAC--gCHRnFHRre~ 65 (127)
..=|=|++||-.-. ...++|..| .||+.-+.+..
T Consensus 35 t~C~~C~~~lwGl~---kqG~~C~~C~~~~Hk~C~~~v~ 70 (77)
T 2enn_A 35 TFCSVCHEFVWGLN---KQGYQCRQCNAAIHKKCIDKVI 70 (77)
T ss_dssp EECSSSCCEECCTT---CCEEECSSSCCEEESGGGSSCC
T ss_pred cCccccChhhcccc---ccccCcCCCCCcCCHhHHhhCc
Confidence 34477999997532 247999999 47777766643
Done!