Query 041672
Match_columns 127
No_of_seqs 117 out of 185
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 16:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041672.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041672hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k81a_ g.59.1.1 (A:) Zinc-bin 40.8 2.5 0.00019 23.9 -0.1 14 46-59 19-32 (36)
2 d1neea2 g.59.1.1 (A:99-135) Zi 24.1 12 0.00088 21.0 0.9 16 44-59 18-33 (37)
3 d1xa6a3 g.49.1.1 (A:209-270) B 21.0 20 0.0014 20.5 1.5 33 28-63 15-49 (62)
4 d1j2oa2 g.39.1.3 (A:31-63) Rho 20.7 14 0.00099 20.6 0.6 9 49-57 1-9 (33)
5 d2gqea1 g.41.11.1 (A:3-31) Nuc 19.7 18 0.0013 19.2 1.0 10 46-55 16-25 (29)
6 d1ul5a_ g.72.1.1 (A:) Squamosa 17.0 23 0.0017 23.0 1.3 36 30-68 5-59 (86)
7 d1ptqa_ g.49.1.1 (A:) Protein 16.1 29 0.0021 19.0 1.4 26 31-59 14-41 (50)
8 d1wj0a_ g.72.1.1 (A:) Squamosa 16.0 32 0.0023 20.8 1.6 13 31-43 6-18 (58)
9 d2aqaa1 g.41.16.1 (A:2-58) H/a 15.2 32 0.0024 20.9 1.5 20 107-126 33-52 (57)
10 d1iyma_ g.44.1.1 (A:) EL5 RING 13.0 45 0.0033 18.6 1.7 14 48-63 21-34 (55)
No 1
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=40.75 E-value=2.5 Score=23.90 Aligned_cols=14 Identities=43% Similarity=0.835 Sum_probs=11.4
Q ss_pred cccccccccccccc
Q 041672 46 IESLKCSACNCHRN 59 (127)
Q Consensus 46 ~~aL~CaACgCHRn 59 (127)
.--|+|.|||-.|+
T Consensus 19 ~~~l~C~aCGa~r~ 32 (36)
T d1k81a_ 19 VHLLKCMACGAIRP 32 (36)
T ss_dssp EEEEEEETTTEEEE
T ss_pred EEEEEeccCCCCCc
Confidence 45799999998775
No 2
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.06 E-value=12 Score=20.99 Aligned_cols=16 Identities=44% Similarity=0.860 Sum_probs=12.3
Q ss_pred CCcccccccccccccc
Q 041672 44 GSIESLKCSACNCHRN 59 (127)
Q Consensus 44 gt~~aL~CaACgCHRn 59 (127)
+-.--|+|.|||=.|.
T Consensus 18 ~R~~~l~C~aCGa~r~ 33 (37)
T d1neea2 18 GRISLLKCEACGAKAP 33 (37)
T ss_dssp TTTTEEECSTTSCCCC
T ss_pred CCEEEEEeccCCCCcc
Confidence 3345799999998775
No 3
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.04 E-value=20 Score=20.54 Aligned_cols=33 Identities=21% Similarity=0.487 Sum_probs=21.6
Q ss_pred CccccCccccccCCCCCCcccccccccc--cccccccc
Q 041672 28 GSATDGCGEFMPSGEEGSIESLKCSACN--CHRNFHRK 63 (127)
Q Consensus 28 ghavDGCgEFmpsg~~gt~~aL~CaACg--CHRnFHRr 63 (127)
...=|=|.++|.... ..+++|..|+ ||+.=..+
T Consensus 15 pt~C~~C~~~i~g~~---~~g~~C~~C~~~~H~~C~~~ 49 (62)
T d1xa6a3 15 PHWCEYCANFMWGLI---AQGVRCSDCGLNVHKQCSKH 49 (62)
T ss_dssp CCBCTTTCCBCCTTT---TCEECCSSSCCCBCTGGGTT
T ss_pred CCCCcccCccccccc---cCeEEcCCCCchhhHHHHhh
Confidence 344577999997533 2589999986 56554433
No 4
>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.70 E-value=14 Score=20.62 Aligned_cols=9 Identities=44% Similarity=1.438 Sum_probs=7.4
Q ss_pred ccccccccc
Q 041672 49 LKCSACNCH 57 (127)
Q Consensus 49 L~CaACgCH 57 (127)
|+|..|+|-
T Consensus 1 LkC~cC~cR 9 (33)
T d1j2oa2 1 LSCDLCGCR 9 (33)
T ss_dssp CCCSSSCSC
T ss_pred Ccccccccc
Confidence 689999993
No 5
>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.75 E-value=18 Score=19.24 Aligned_cols=10 Identities=50% Similarity=1.112 Sum_probs=8.4
Q ss_pred cccccccccc
Q 041672 46 IESLKCSACN 55 (127)
Q Consensus 46 ~~aL~CaACg 55 (127)
.++.+|.||.
T Consensus 16 ~~~~~CvAC~ 25 (29)
T d2gqea1 16 PEAIKCVACE 25 (29)
T ss_dssp TTCSBCSSSC
T ss_pred hhCCEEeecC
Confidence 4689999996
No 6
>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=17.00 E-value=23 Score=22.98 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=22.3
Q ss_pred cccCccccccCCCC-------------------CCccccccccccccccccccccCCC
Q 041672 30 ATDGCGEFMPSGEE-------------------GSIESLKCSACNCHRNFHRKEIGCD 68 (127)
Q Consensus 30 avDGCgEFmpsg~~-------------------gt~~aL~CaACgCHRnFHRre~~~~ 68 (127)
-||||+.-+.+..+ +.....-|-.|+ .||--..-++
T Consensus 5 qV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~---rFH~L~eFD~ 59 (86)
T d1ul5a_ 5 QVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCG---KFHLLPDFDE 59 (86)
T ss_dssp EETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTS---SEEEGGGBCS
T ss_pred eeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhc---cccChhhhcc
Confidence 37888888877544 223455677774 6776655443
No 7
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.12 E-value=29 Score=18.95 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=17.8
Q ss_pred ccCccccccCCCCCCcccccccccc--cccc
Q 041672 31 TDGCGEFMPSGEEGSIESLKCSACN--CHRN 59 (127)
Q Consensus 31 vDGCgEFmpsg~~gt~~aL~CaACg--CHRn 59 (127)
=|=|.++|.... ..+++|..|+ ||+.
T Consensus 14 C~~C~~~i~g~~---~qg~~C~~C~~~~H~~ 41 (50)
T d1ptqa_ 14 CDHCGSLLWGLV---KQGLKCEDCGMNVHHK 41 (50)
T ss_dssp CTTTCCBCCSSS---SCEEEETTTCCEECHH
T ss_pred CcccCCcccCcc---cCcEECCCCCCeeChh
Confidence 456888886532 2589999986 5543
No 8
>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=16.04 E-value=32 Score=20.84 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=9.5
Q ss_pred ccCccccccCCCC
Q 041672 31 TDGCGEFMPSGEE 43 (127)
Q Consensus 31 vDGCgEFmpsg~~ 43 (127)
||||+.-+.+..+
T Consensus 6 V~gC~~dl~~~k~ 18 (58)
T d1wj0a_ 6 VDNCGADLSKVKD 18 (58)
T ss_dssp STTCCCEETSCCS
T ss_pred eCCcchhhhhhHH
Confidence 7888888776544
No 9
>d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex subunit 3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.22 E-value=32 Score=20.94 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=14.2
Q ss_pred CCCCCCchHHHhhhcccccC
Q 041672 107 PAPADDDDHQKRMMMRKRFR 126 (127)
Q Consensus 107 ~~~~~~~~~~~~~~~KKRFR 126 (127)
..+++|..-.|+-..||||-
T Consensus 33 RFSPdDkysr~Ri~lKkrfg 52 (57)
T d2aqaa1 33 RFSPDDKYSRQRVTLKKRFG 52 (57)
T ss_dssp CCCSSSTTSHHHHSCCCSCC
T ss_pred cCCcccccHHHHHHHHHHhc
Confidence 34555666678888999994
No 10
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=13.04 E-value=45 Score=18.60 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=8.7
Q ss_pred cccccccccccccccc
Q 041672 48 SLKCSACNCHRNFHRK 63 (127)
Q Consensus 48 aL~CaACgCHRnFHRr 63 (127)
.+++..|+ | .||..
T Consensus 21 ~~~l~~C~-H-~Fh~~ 34 (55)
T d1iyma_ 21 ARFLPRCG-H-GFHAE 34 (55)
T ss_dssp CEECSSSC-C-EECTT
T ss_pred EEEeCCCC-C-cccHH
Confidence 34555566 5 78875
Done!