BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041675
         (71 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4J2F|A Chain A, Crystal Structure Of A Glutathione Transferase Family
           Member From Ricinus Communis, Target Efi-501866
          Length = 223

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 1   MFFSTGQVLENAMKAALEMLQTVEKHGPG--EKKFFNGDDIGLADLAFGAIAYWLQVLED 58
           +F + G+ LE A+K  LE+L+T+E+H  G  + K+F GD IG+ D+AF  IA+WL V+E+
Sbjct: 111 IFRTKGEELEKAVKNCLEVLKTIEEHAMGVSDDKYFGGDKIGIVDIAFCGIAHWLGVIEE 170

Query: 59  VMEV 62
           V  V
Sbjct: 171 VAGV 174


>pdb|2VO4|A Chain A, Glutathione Transferase From Glycine Max
 pdb|2VO4|B Chain B, Glutathione Transferase From Glycine Max
 pdb|3FHS|A Chain A, Glutathione Transferase From Glycine Max At 2.7 Resolution
 pdb|3FHS|B Chain B, Glutathione Transferase From Glycine Max At 2.7 Resolution
          Length = 219

 Score = 35.4 bits (80), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 4   STGQVLENAMKAALEMLQTVEKHGPGEKKFFNGDDIGLADLAFGAIAYWLQVLEDVMEVN 63
           S G+  E A K  +E L+ +E+   G+K +F GD++G  D+A      W +  E    +N
Sbjct: 116 SKGEEKEAAKKEFIEALKLLEEQ-LGDKTYFGGDNLGFVDIALVPFYTWFKAYETFGTLN 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,083,993
Number of Sequences: 62578
Number of extensions: 66563
Number of successful extensions: 121
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 5
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)