Your job contains 1 sequence.
>041678
MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG
RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF
IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI
LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV
RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV
GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI
EGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041678
(402 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2026699 - symbol:MURE species:3702 "Arabidopsi... 1788 2.5e-184 1
TIGR_CMR|BA_4053 - symbol:BA_4053 "UDP-N-acetylmuramoylal... 578 2.6e-67 2
TIGR_CMR|CHY_2074 - symbol:CHY_2074 "UDP-N-acetylmuramoyl... 537 1.3e-63 2
TIGR_CMR|GSU_3074 - symbol:GSU_3074 "UDP-N-acetylmuramoyl... 634 4.8e-62 1
UNIPROTKB|Q83F28 - symbol:murE "UDP-N-acetylmuramoyl-L-al... 495 1.8e-56 2
TIGR_CMR|CBU_0123 - symbol:CBU_0123 "UDP-N-acetylmuramoyl... 495 1.8e-56 2
TIGR_CMR|SO_4224 - symbol:SO_4224 "UDP-N-acetylmuramoylal... 439 2.9e-50 2
UNIPROTKB|P22188 - symbol:murE species:83333 "Escherichia... 417 2.0e-49 2
UNIPROTKB|Q604V3 - symbol:murE "UDP-N-acetylmuramoyl-L-al... 406 4.2e-49 2
UNIPROTKB|Q9X6N4 - symbol:murE "UDP-N-acetylmuramoyl-L-al... 418 6.0e-46 2
TIGR_CMR|VC_2406 - symbol:VC_2406 "UDP-N-acetylmuramoylal... 418 6.0e-46 2
TIGR_CMR|CPS_4470 - symbol:CPS_4470 "UDP-N-acetylmuramoyl... 392 1.2e-41 2
UNIPROTKB|Q0BXT7 - symbol:murE "UDP-N-acetylmuramoyl-L-al... 364 1.2e-41 2
UNIPROTKB|P65477 - symbol:murE "UDP-N-acetylmuramoyl-L-al... 420 2.3e-39 1
TIGR_CMR|SPO_1182 - symbol:SPO_1182 "UDP-N-acetylmuramoyl... 343 1.1e-38 2
TIGR_CMR|CJE_1813 - symbol:CJE_1813 "UDP-N-acetylmuramoyl... 255 1.0e-24 2
TIGR_CMR|GSU_3068 - symbol:GSU_3068 "UDP-N-acetylmuramate... 148 2.3e-07 1
UNIPROTKB|Q48EF4 - symbol:murF "UDP-N-acetylmuramoyl-trip... 146 3.7e-07 1
TIGR_CMR|CPS_4464 - symbol:CPS_4464 "UDP-N-acetylmuramate... 133 1.2e-05 1
UNIPROTKB|Q9KPG3 - symbol:VC_2405 "UDP-N-acetylmuramoyl-t... 131 1.7e-05 1
TIGR_CMR|VC_2405 - symbol:VC_2405 "UDP-N-acetylmuramoylal... 131 1.7e-05 1
TIGR_CMR|BA_4051 - symbol:BA_4051 "UDP-N-acetylmuramoylal... 129 2.8e-05 1
TIGR_CMR|CHY_2071 - symbol:CHY_2071 "UDP-N-acetylmuramoyl... 129 2.8e-05 1
TIGR_CMR|SPO_1187 - symbol:SPO_1187 "UDP-N-acetylmuramoyl... 126 6.4e-05 1
UNIPROTKB|Q2GEF7 - symbol:NSE_0245 "Putative uncharacteri... 126 6.4e-05 1
TIGR_CMR|NSE_0245 - symbol:NSE_0245 "conserved hypothetic... 126 6.4e-05 1
TIGR_CMR|BA_0246 - symbol:BA_0246 "UDP-N-acetylmuramoylal... 125 8.0e-05 1
UNIPROTKB|Q9KPG5 - symbol:murD "UDP-N-acetylmuramoylalani... 123 0.00013 1
TIGR_CMR|VC_2403 - symbol:VC_2403 "UDP-N-acetylmuramoylal... 123 0.00013 1
UNIPROTKB|P11880 - symbol:murF species:83333 "Escherichia... 122 0.00017 1
TIGR_CMR|CBU_0131 - symbol:CBU_0131 "UDP-N-acetylmuramoyl... 120 0.00027 1
TIGR_CMR|CBU_0124 - symbol:CBU_0124 "UDP-N-acetylmuramoyl... 120 0.00027 1
>TAIR|locus:2026699 [details] [associations]
symbol:MURE species:3702 "Arabidopsis thaliana"
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0009058 "biosynthetic process" evidence=IEA;ISS] [GO:0016874
"ligase activity" evidence=IEA;ISS] [GO:0016881 "acid-amino acid
ligase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0009658 "chloroplast organization"
evidence=RCA;IMP] [GO:0010020 "chloroplast fission" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0006399 "tRNA
metabolic process" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0034660 "ncRNA metabolic process"
evidence=RCA] [GO:0042793 "transcription from plastid promoter"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] HAMAP:MF_00208 InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005761 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
EMBL:CP002684 GO:GO:0005524 GO:GO:0009507 GO:GO:0051301
GO:GO:0008360 GO:GO:0007049 GO:GO:0009252 GO:GO:0010020
GO:GO:0009295 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 GO:GO:0008765 TIGRFAMs:TIGR01085
OMA:RPLMGEA IPI:IPI00529969 RefSeq:NP_176555.4 UniGene:At.36093
ProteinModelPortal:F4I3P9 SMR:F4I3P9 PRIDE:F4I3P9
EnsemblPlants:AT1G63680.1 GeneID:842672 KEGG:ath:AT1G63680
Uniprot:F4I3P9
Length = 772
Score = 1788 (634.5 bits), Expect = 2.5e-184, P = 2.5e-184
Identities = 337/404 (83%), Positives = 369/404 (91%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTT--PDAVMVQNLMAKMLHNGTEAVVMEASSHGLA 58
MG+RTGM S+VS YIHGDNKL++P T PDAV+VQ+LMAKMLHNGTE++VMEAS LA
Sbjct: 369 MGVRTGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHNGTESLVMEASPQELA 428
Query: 59 LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNAT 118
LG+C EVDFDIAVFTNLTR++ DF GT+EEYR+A+AKLFSRMVDPERHRKVVNIDDPNA
Sbjct: 429 LGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDPERHRKVVNIDDPNAA 488
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
F+ QGNP+VPVVTFAMEN KADVHPLKFELSLFETQVLVNTP GILEISSGLLGRHNIY
Sbjct: 489 FFVQQGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGILEISSGLLGRHNIY 548
Query: 179 NILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
NIL PLEDIVRG+EEVDAVPGRCELIDEEQAFGVIVD+A+TPD LSRLLD
Sbjct: 549 NILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFGVIVDHANTPDGLSRLLD 608
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
S+REL PRRIITV+GC GE++RGKRPLMTKIAT+KSDVT+LTSDNP NEDPLDILDDML+
Sbjct: 609 SIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTSDNPRNEDPLDILDDMLS 668
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+GWTMQEYLK+GE+DYYPPL NGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE Y
Sbjct: 669 GIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAY 728
Query: 359 QIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
Q+EG+KKEF+DDREE REALQYVDELHQAGIDTSEFPWRLPESH
Sbjct: 729 QLEGEKKEFYDDREECREALQYVDELHQAGIDTSEFPWRLPESH 772
>TIGR_CMR|BA_4053 [details] [associations]
symbol:BA_4053
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase"
species:198094 "Bacillus anthracis str. Ames" [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] [GO:0016881
"acid-amino acid ligase activity" evidence=ISS] HAMAP:MF_00208
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005761
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 HOGENOM:HOG000268118 RefSeq:NP_846293.1
RefSeq:YP_020695.1 RefSeq:YP_030016.1 ProteinModelPortal:Q81WC7
DNASU:1086243 EnsemblBacteria:EBBACT00000008767
EnsemblBacteria:EBBACT00000016254 EnsemblBacteria:EBBACT00000023692
GeneID:1086243 GeneID:2815156 GeneID:2848185 KEGG:ban:BA_4053
KEGG:bar:GBAA_4053 KEGG:bat:BAS3765 eggNOG:COG0769 KO:K01928
OMA:MAKDNGA ProtClustDB:PRK00139
BioCyc:BANT260799:GJAJ-3823-MONOMER
BioCyc:BANT261594:GJ7F-3941-MONOMER GO:GO:0008765
TIGRFAMs:TIGR01085 Uniprot:Q81WC7
Length = 491
Score = 578 (208.5 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 120/311 (38%), Positives = 183/311 (58%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 VEYMR--STAATVVTYGIDTT-SDVMAKDIAMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+L LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYL 308
G E +
Sbjct: 423 HGANGNNYEVI 433
Score = 124 (48.7 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 321 NGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
NG+ + R+ A+ A+ + D++++AGKGHETYQI G FDDRE ++EA+
Sbjct: 426 NGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQIIGKDVHHFDDREVAKEAI 483
>TIGR_CMR|CHY_2074 [details] [associations]
symbol:CHY_2074 "UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate ligase" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0009252 "peptidoglycan biosynthetic
process" evidence=ISS] [GO:0016881 "acid-amino acid ligase
activity" evidence=ISS] HAMAP:MF_00208 InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005761 InterPro:IPR013221
InterPro:IPR018109 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
PROSITE:PS01011 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0007049 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 GO:GO:0004326 HOGENOM:HOG000268118
eggNOG:COG0769 KO:K01928 GO:GO:0008765 TIGRFAMs:TIGR01085
OMA:HTMEEYA GO:GO:0046901 RefSeq:YP_360893.1
ProteinModelPortal:Q3AAE1 STRING:Q3AAE1 GeneID:3727837
KEGG:chy:CHY_2074 PATRIC:21277229
BioCyc:CHYD246194:GJCN-2073-MONOMER Uniprot:Q3AAE1
Length = 492
Score = 537 (194.1 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 123/309 (39%), Positives = 173/309 (55%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD L TTPDA+ +Q L A+M+ + V ME SSH L R
Sbjct: 132 GYKTGLIGTI-YNRIGDKILPVTNTTPDALSLQRLFAEMVKSEVSHVAMEVSSHALVQKR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+DF VFTNLT+DH+DFH + E Y NAK +LF + + + V+N DD +
Sbjct: 191 VLGIDFKTGVFTNLTQDHLDFHESMENYFNAKKELFKILAEQKALPGVINKDDFYGQRIL 250
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ P VT+ ++ ++AD+ EL+ T + + LLG N+YNIL
Sbjct: 251 KEVAH--PFVTYGIK-EQADITAKNVELTNSGTAFTLCYQEEEYPVKVKLLGLFNVYNIL 307
Query: 182 XXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
L DIV+ + ++ VPGR ELIDE Q F VIVDYAHTPD L +L S R
Sbjct: 308 AAVGTLLTLGFSLPDIVKNLPLLNPVPGRFELIDEGQDFAVIVDYAHTPDGLENILKSAR 367
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
+ P R+I V GC G+ D+ KRP M KI+ +D+TI+TSDNP EDP I++++ G
Sbjct: 368 AITPGRVIAVFGCGGDRDKTKRPKMGKISATLADITIITSDNPRTEDPEAIINEIEKGFF 427
Query: 302 WTMQ-EYLK 309
+ +YLK
Sbjct: 428 DALPGKYLK 436
Score = 130 (50.8 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 312 ENDYYPPLPNGHRLFLHDI-RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDD 370
E ++ LP +L ++ R+ A++ A+ + + GD VV+AGKGHE YQI G K FDD
Sbjct: 423 EKGFFDALPGK---YLKEVDRKKAIKTALLLAKPGDTVVIAGKGHEDYQIIGTTKYPFDD 479
Query: 371 REESREALQ 379
R +RE L+
Sbjct: 480 RVVAREILR 488
>TIGR_CMR|GSU_3074 [details] [associations]
symbol:GSU_3074
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008765
"UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
activity" evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic
process" evidence=ISS] HAMAP:MF_00208 InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005761 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360
GO:GO:0007049 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 HOGENOM:HOG000268118 eggNOG:COG0769 KO:K01928
ProtClustDB:PRK00139 GO:GO:0008765 TIGRFAMs:TIGR01085
RefSeq:NP_954115.1 HSSP:P22188 ProteinModelPortal:Q748D2
GeneID:2686302 KEGG:gsu:GSU3074 PATRIC:22029001 OMA:RPLMGEA
BioCyc:GSUL243231:GH27-3031-MONOMER Uniprot:Q748D2
Length = 509
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 154/389 (39%), Positives = 215/389 (55%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ +L ++SY G + +P TTP++V +Q + ++ G +AVVME SSH L R
Sbjct: 129 GIPAAVLGTISYRF-GSKLVPAPHTTPESVELQATIRDLVDEGAKAVVMEVSSHALEQRR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPE----RHRKVVNIDDPNA 117
FD+AVFTNLTRDH+D+H E Y +KA+LF+ +V P+ R +N DD
Sbjct: 188 VDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTELVAPDGVKPRRAAAINRDDSYG 247
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNT---PHGILEISSGLLGR 174
+ PV+++ + AD ++ E +F + T P G S LLGR
Sbjct: 248 ARLVETAV--APVISYGLA---ADA-AVRAENVVFSVDGIAGTLVTPFGTAPFHSHLLGR 301
Query: 175 HNIYNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+YNIL L+ I+ GIE VPGR E + E+ V+VDYAHT DAL
Sbjct: 302 FNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERVHNERGVTVLVDYAHTGDALE 361
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L +V ELA RIITV GC G+ DRGKRP+M +I+ S +TI+TSDNP E+P I+
Sbjct: 362 NVLKTVSELATGRIITVFGCGGDRDRGKRPVMAEISGRYSHLTIVTSDNPRTEEPAAIIK 421
Query: 295 DMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
++L G+ ++EY N + + HD R+A AVA GD+V++AGK
Sbjct: 422 EVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAATVAVA----GDIVLLAGK 477
Query: 354 GHETYQIEGDKKEFFDDREESREALQYVD 382
GHE YQI G +K FDDREE+ A + D
Sbjct: 478 GHEDYQIIGTEKFHFDDREEAIAAFRSSD 506
>UNIPROTKB|Q83F28 [details] [associations]
symbol:murE
"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase" species:227377 "Coxiella burnetii RSA 493" [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] [GO:0016881
"acid-amino acid ligase activity" evidence=ISS] HAMAP:MF_00208
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005761
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 GO:GO:0007049 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 HOGENOM:HOG000268118 eggNOG:COG0769
KO:K01928 ProtClustDB:PRK00139 GO:GO:0008765 TIGRFAMs:TIGR01085
RefSeq:NP_819173.1 ProteinModelPortal:Q83F28 GeneID:1207994
KEGG:cbu:CBU_0123 PATRIC:17928931 OMA:HTMEEYA
BioCyc:CBUR227377:GJ7S-128-MONOMER Uniprot:Q83F28
Length = 489
Score = 495 (179.3 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 115/302 (38%), Positives = 159/302 (52%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+R G++ ++ Y G S TTP+ + +Q A+M G +A+ ME SSH L R
Sbjct: 132 GIRCGVIGTLGYGFLGSLHKTS-HTTPEPIQLQQAFAEMRKQGAKAIAMEVSSHALHQRR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V FDIAVFT L+RDH+D+HG E Y AK LF + P H VVN DD I
Sbjct: 191 VEGVQFDIAVFTQLSRDHLDYHGDMENYARAKELLFQQ---PGLHTGVVNCDDALGKRII 247
Query: 122 AQGNPDVPVVTFAMENKKAD----VHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
A + +V ++ K D V + V V TP G ++ L GR NI
Sbjct: 248 AHYRHQLTLVGYSANGVKDDRVSSVIASAIQPLAQGFSVEVQTPWGEGTFTTPLFGRFNI 307
Query: 178 YNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+L P + + + ++ VPGR +++D ++ +IVDYAHTPDAL + L
Sbjct: 308 SNLLAVLSVLCLCEIPFDKALLELSQLRNVPGRMQVVDSQRQPQIIVDYAHTPDALEKAL 367
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++RE R+I V GC G+ DRGKRP M +A +D ILT+DNP E PL I+ D+
Sbjct: 368 TALREHCQGRLICVFGCGGDRDRGKRPQMAAVAEQHADQIILTNDNPRTESPLTIIQDIQ 427
Query: 298 AG 299
AG
Sbjct: 428 AG 429
Score = 104 (41.7 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 331 RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
R A+R AV M D+V++AGKGHET Q D+ F+D EE+++AL
Sbjct: 442 RAEAIRYAVQMAAVNDIVLIAGKGHETTQTIADQVLPFNDVEEAKKAL 489
>TIGR_CMR|CBU_0123 [details] [associations]
symbol:CBU_0123 "UDP-N-acetylmuramoylalanyl-D-glutamate-2,
6-diaminopimelate ligase" species:227377 "Coxiella burnetii RSA
493" [GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
HAMAP:MF_00208 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005761 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 GO:GO:0007049 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016881 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 HOGENOM:HOG000268118 eggNOG:COG0769 KO:K01928
ProtClustDB:PRK00139 GO:GO:0008765 TIGRFAMs:TIGR01085
RefSeq:NP_819173.1 ProteinModelPortal:Q83F28 GeneID:1207994
KEGG:cbu:CBU_0123 PATRIC:17928931 OMA:HTMEEYA
BioCyc:CBUR227377:GJ7S-128-MONOMER Uniprot:Q83F28
Length = 489
Score = 495 (179.3 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 115/302 (38%), Positives = 159/302 (52%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+R G++ ++ Y G S TTP+ + +Q A+M G +A+ ME SSH L R
Sbjct: 132 GIRCGVIGTLGYGFLGSLHKTS-HTTPEPIQLQQAFAEMRKQGAKAIAMEVSSHALHQRR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V FDIAVFT L+RDH+D+HG E Y AK LF + P H VVN DD I
Sbjct: 191 VEGVQFDIAVFTQLSRDHLDYHGDMENYARAKELLFQQ---PGLHTGVVNCDDALGKRII 247
Query: 122 AQGNPDVPVVTFAMENKKAD----VHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
A + +V ++ K D V + V V TP G ++ L GR NI
Sbjct: 248 AHYRHQLTLVGYSANGVKDDRVSSVIASAIQPLAQGFSVEVQTPWGEGTFTTPLFGRFNI 307
Query: 178 YNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+L P + + + ++ VPGR +++D ++ +IVDYAHTPDAL + L
Sbjct: 308 SNLLAVLSVLCLCEIPFDKALLELSQLRNVPGRMQVVDSQRQPQIIVDYAHTPDALEKAL 367
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++RE R+I V GC G+ DRGKRP M +A +D ILT+DNP E PL I+ D+
Sbjct: 368 TALREHCQGRLICVFGCGGDRDRGKRPQMAAVAEQHADQIILTNDNPRTESPLTIIQDIQ 427
Query: 298 AG 299
AG
Sbjct: 428 AG 429
Score = 104 (41.7 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 331 RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
R A+R AV M D+V++AGKGHET Q D+ F+D EE+++AL
Sbjct: 442 RAEAIRYAVQMAAVNDIVLIAGKGHETTQTIADQVLPFNDVEEAKKAL 489
>TIGR_CMR|SO_4224 [details] [associations]
symbol:SO_4224
"UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
ligase" species:211586 "Shewanella oneidensis MR-1" [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] [GO:0016881
"acid-amino acid ligase activity" evidence=ISS] HAMAP:MF_00208
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005761
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 GO:GO:0007049 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 HOGENOM:HOG000268118 eggNOG:COG0769
KO:K01928 ProtClustDB:PRK00139 TIGRFAMs:TIGR01085
RefSeq:NP_719752.2 ProteinModelPortal:Q8E9P3 GeneID:1171828
KEGG:son:SO_4224 PATRIC:23528086 OMA:GMDMRAL Uniprot:Q8E9P3
Length = 491
Score = 439 (159.6 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
Identities = 100/282 (35%), Positives = 151/282 (53%)
Query: 21 LESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM 80
++S TT DA+ + + + + G ME SSHGL GR V FD+AVFTNLTRDH+
Sbjct: 151 VDSGNTTADAITLMRQLHEFANKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHL 210
Query: 81 DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ-GNPDVPVVTFAME-NK 138
D+HG E Y AK LF D RH ++N+DDP +++A+ N + F++E +K
Sbjct: 211 DYHGDMENYAAAKQMLFR--FDSLRHG-LLNLDDPIGGAWLAELKNVPAKIWGFSIEAHK 267
Query: 139 KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILXXXXXXXXXXXPLEDIV 198
A + + Q + P G ++ISS LLG N+ N+L + +
Sbjct: 268 AAAFYTKNVRFNDQGVQATLVWPEGEIDISSPLLGAFNLSNLLAALSALYLQGMDMRALA 327
Query: 199 RGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258
+ + V GR E ++VDYAHTPDA+ + L+++R + V GC G+
Sbjct: 328 AKVPYLVPVAGRMERFTTADNITLVVDYAHTPDAIEQALNALRRHCAGVLWCVFGCGGDR 387
Query: 259 DRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
D+GKRPLM + A +D ++TSDN +EDP I+ D++ G+
Sbjct: 388 DKGKRPLMGQAAEQFADRIMVTSDNARSEDPNQIITDIIQGL 429
Score = 101 (40.6 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 327 LHDIRRVA-VRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESRE 376
L ++ RVA ++ VA + GD++++AGKGHETYQ + +D+R +R+
Sbjct: 436 LTEVDRVAAIKQVVAQAKSGDVILLAGKGHETYQEAAGVRHDYDERALARQ 486
>UNIPROTKB|P22188 [details] [associations]
symbol:murE species:83333 "Escherichia coli K-12"
[GO:0047482 "UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
ligase activity" evidence=IDA] [GO:0009058 "biosynthetic process"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0008360
"regulation of cell shape" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0071555 "cell wall organization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008765
"UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
activity" evidence=IEA] [GO:0009252 "peptidoglycan biosynthetic
process" evidence=IEA] HAMAP:MF_00208 InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005761 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0007049 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 EMBL:X55034 EMBL:X55814
HOGENOM:HOG000268118 eggNOG:COG0769 KO:K01928 ProtClustDB:PRK00139
GO:GO:0008765 TIGRFAMs:TIGR01085 EMBL:U67894 PIR:S14384
RefSeq:NP_414627.1 RefSeq:YP_488390.1 PDB:1E8C PDBsum:1E8C
ProteinModelPortal:P22188 SMR:P22188 DIP:DIP-10280N IntAct:P22188
MINT:MINT-1230964 SWISS-2DPAGE:P22188 PaxDb:P22188 PRIDE:P22188
EnsemblBacteria:EBESCT00000000614 EnsemblBacteria:EBESCT00000000615
EnsemblBacteria:EBESCT00000000616 EnsemblBacteria:EBESCT00000000617
EnsemblBacteria:EBESCT00000016958 GeneID:12932647 GeneID:944791
KEGG:ecj:Y75_p0084 KEGG:eco:b0085 PATRIC:32115275 EchoBASE:EB0616
EcoGene:EG10621 OMA:GALAYVD
BioCyc:EcoCyc:UDP-NACMURALGLDAPLIG-MONOMER
BioCyc:ECOL316407:JW0083-MONOMER
BioCyc:MetaCyc:UDP-NACMURALGLDAPLIG-MONOMER
EvolutionaryTrace:P22188 Genevestigator:P22188 GO:GO:0047482
Uniprot:P22188
Length = 495
Score = 417 (151.9 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 104/288 (36%), Positives = 157/288 (54%)
Query: 21 LESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM 80
+ + TT AV VQ+ +A ++ G ME SSHGL R + + F +VFTNL+RDH+
Sbjct: 153 IPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHL 212
Query: 81 DFHGTEEEYRNAKAKLFSRMVDPERH--RKVVNIDDPNATSFIAQGNPDVPVVTFAMENK 138
D+HG E Y AK L+S E H + ++N DD ++A+ PD V +ME+
Sbjct: 213 DYHGDMEHYEAAKWLLYS-----EHHCGQAIINADDEVGRRWLAK-LPDA--VAVSMEDH 264
Query: 139 -KADVHP--LKF-ELSLFETQVLV--NTPHGILEISSGLLGRHNIYNILXXXXXXXXXXX 192
+ H LK E++ ++ + ++ G EI S L+G N+ N+L
Sbjct: 265 INPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGY 324
Query: 193 PLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVV 252
PL D+++ + V GR E+ V+VDYAHTPDAL + L + R ++ V
Sbjct: 325 PLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVF 384
Query: 253 GCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
GC G+ D+GKRPLM IA + +DV ++T DNP E+P I++D+LAG+
Sbjct: 385 GCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGM 432
Score = 115 (45.5 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 319 LPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDR 371
L GH + R AV CAV +E D+V+VAGKGHE YQI G+++ + DR
Sbjct: 433 LDAGHAKVMEG-RAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDR 484
>UNIPROTKB|Q604V3 [details] [associations]
symbol:murE
"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase" species:243233 "Methylococcus capsulatus str. Bath"
[GO:0008765
"UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
activity" evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic
process" evidence=ISS] HAMAP:MF_00208 InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005761 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360
GO:GO:0007049 GO:GO:0009252 EMBL:AE017282 GenomeReviews:AE017282_GR
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 HOGENOM:HOG000268118 KO:K01928 GO:GO:0008765
TIGRFAMs:TIGR01085 OMA:HTMEEYA RefSeq:YP_114847.1
ProteinModelPortal:Q604V3 GeneID:3104896 KEGG:mca:MCA2433
PATRIC:22608728 Uniprot:Q604V3
Length = 479
Score = 406 (148.0 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 105/304 (34%), Positives = 155/304 (50%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
T ++ ++ + + G N TTPDA+ + ++A + G +EASSHG A GR +
Sbjct: 119 TAVIGTLGWGLPG-NLRRIAHTTPDAIEIHAILATLKAQGFRLAALEASSHGQAQGRING 177
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
V A++T +TRDH+++HGT E Y AK L + +P V +DDP+ + +
Sbjct: 178 VHCRGALYTRITRDHLNYHGTFESYLAAKLGL---LANPALEFVAVTLDDPSVDAILRSV 234
Query: 125 NPDVPVVTFAMEN-KKADVHPLKFELSLFETQ----VLVNTPHGILEISSGLLGRHNIYN 179
V V+ +++ + D L+ E +L +T+ + V+ +EI + + G N N
Sbjct: 235 PAGVKVIGYSLGGGESVDFPVLRVE-ALEQTREGLHLKVDYAGRTIEIDAPVYGDFNAEN 293
Query: 180 ILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+L P E + V VPGR E E VIVDYAHTPDAL +L S
Sbjct: 294 LLGTLAVLVGLGYPAEAAASRVGRVRPVPGRMERF-RENGLTVIVDYAHTPDALRNVLTS 352
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R R+ V GC G+ DRGKRP M IA +D I+T DNP +E I+ D+LAG
Sbjct: 353 LRRHCRERLWVVFGCGGDRDRGKRPEMGAIAARIADHVIVTDDNPRSEPGDAIVQDILAG 412
Query: 300 VGWT 303
G T
Sbjct: 413 CGET 416
Score = 123 (48.4 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 331 RRVAVRCAVAMGEEGDMVVVAGKGHETYQ-IEGDKKEFFDDREESREAL 378
RR A+R A+A +GD+V+VAGKGHE +Q + G EF DREE R+AL
Sbjct: 424 RRTAIRAAIAQAGDGDIVLVAGKGHEAFQEVAGVFYEF-SDREEVRKAL 471
>UNIPROTKB|Q9X6N4 [details] [associations]
symbol:murE
"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] [GO:0016881 "acid-amino acid ligase activity"
evidence=ISS] HAMAP:MF_00208 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005761 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0007049 GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0769
KO:K01928 ProtClustDB:PRK00139 GO:GO:0008765 TIGRFAMs:TIGR01085
OMA:HTMEEYA EMBL:AF141867 PIR:B82082 RefSeq:NP_232036.1
ProteinModelPortal:Q9X6N4 SMR:Q9X6N4 DNASU:2613075 GeneID:2613075
KEGG:vch:VC2406 PATRIC:20083833 Uniprot:Q9X6N4
Length = 495
Score = 418 (152.2 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 98/295 (33%), Positives = 156/295 (52%)
Query: 19 NKLE-SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTR 77
N LE + TT +A+ +Q + + G + +E SSHGL GR ++ F VF+NL+R
Sbjct: 153 NALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSR 212
Query: 78 DHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMEN 137
DH+D+HGT E Y AK LFS + ++N+DD ++ Q P V+ +
Sbjct: 213 DHLDYHGTMEAYAAAKFSLFS---EHACQNAIINVDDAVGAQWVKQ-LPQAIGVSLVTKP 268
Query: 138 KKADVHPLKFELSLFETQVLVN--TPHGILEISSGLLGRHNIYNILXXXXXXXXXXXPLE 195
A + E++ E+ + +N + G E+ + L+G N N+L
Sbjct: 269 NTAQAIWAR-EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGFEKS 327
Query: 196 DIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCA 255
++ ++ V GR EL EQ ++VDYAHTPDAL + L ++R ++ +VGC
Sbjct: 328 ALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDALEKALRALRVHCAGQLWAIVGCG 387
Query: 256 GESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKY 310
G+ DRGKRP+M IA +D ILT DNP +E P I+ DM+AG+ + + ++++
Sbjct: 388 GDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTYPERAHIEH 442
Score = 81 (33.6 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 346 DMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
D++++AGKGHE YQ+ ++ + DRE +++ L+
Sbjct: 459 DIILLAGKGHEDYQVLANETIHYSDRETAQQLLE 492
>TIGR_CMR|VC_2406 [details] [associations]
symbol:VC_2406
"UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
ligase" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] [GO:0016881
"acid-amino acid ligase activity" evidence=ISS] HAMAP:MF_00208
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005761
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0007049
GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0769 KO:K01928
ProtClustDB:PRK00139 GO:GO:0008765 TIGRFAMs:TIGR01085 OMA:HTMEEYA
EMBL:AF141867 PIR:B82082 RefSeq:NP_232036.1
ProteinModelPortal:Q9X6N4 SMR:Q9X6N4 DNASU:2613075 GeneID:2613075
KEGG:vch:VC2406 PATRIC:20083833 Uniprot:Q9X6N4
Length = 495
Score = 418 (152.2 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 98/295 (33%), Positives = 156/295 (52%)
Query: 19 NKLE-SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTR 77
N LE + TT +A+ +Q + + G + +E SSHGL GR ++ F VF+NL+R
Sbjct: 153 NALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSR 212
Query: 78 DHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMEN 137
DH+D+HGT E Y AK LFS + ++N+DD ++ Q P V+ +
Sbjct: 213 DHLDYHGTMEAYAAAKFSLFS---EHACQNAIINVDDAVGAQWVKQ-LPQAIGVSLVTKP 268
Query: 138 KKADVHPLKFELSLFETQVLVN--TPHGILEISSGLLGRHNIYNILXXXXXXXXXXXPLE 195
A + E++ E+ + +N + G E+ + L+G N N+L
Sbjct: 269 NTAQAIWAR-EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGFEKS 327
Query: 196 DIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCA 255
++ ++ V GR EL EQ ++VDYAHTPDAL + L ++R ++ +VGC
Sbjct: 328 ALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDALEKALRALRVHCAGQLWAIVGCG 387
Query: 256 GESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKY 310
G+ DRGKRP+M IA +D ILT DNP +E P I+ DM+AG+ + + ++++
Sbjct: 388 GDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTYPERAHIEH 442
Score = 81 (33.6 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 346 DMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
D++++AGKGHE YQ+ ++ + DRE +++ L+
Sbjct: 459 DIILLAGKGHEDYQVLANETIHYSDRETAQQLLE 492
>TIGR_CMR|CPS_4470 [details] [associations]
symbol:CPS_4470
"UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
ligase" species:167879 "Colwellia psychrerythraea 34H" [GO:0008765
"UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
activity" evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic
process" evidence=ISS] HAMAP:MF_00208 InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005761 InterPro:IPR013221
InterPro:IPR018109 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
PROSITE:PS01011 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 GO:GO:0007049 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009252 Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623 GO:GO:0004326
HOGENOM:HOG000268118 eggNOG:COG0769 KO:K01928 GO:GO:0008765
TIGRFAMs:TIGR01085 OMA:GALAYVD GO:GO:0046901 RefSeq:YP_271118.1
STRING:Q47VQ4 GeneID:3519095 KEGG:cps:CPS_4470 PATRIC:21471773
BioCyc:CPSY167879:GI48-4479-MONOMER Uniprot:Q47VQ4
Length = 530
Score = 392 (143.0 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 96/286 (33%), Positives = 143/286 (50%)
Query: 18 DNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTR 77
DN TTP A + L + V ME SSH L+ R FDIA+FTNL+R
Sbjct: 161 DNLHPIENTTPGACELHQLFKRFSDEQFSYVAMEVSSHALSQNRVQADLFDIAIFTNLSR 220
Query: 78 DHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMEN 137
DH+D+HG+ Y +K ++FS D + VVN DD A ++ + ++ E
Sbjct: 221 DHLDYHGSMASYGESKKQIFS--ADSNQVA-VVNFDDQQAKKWLENWPKQQTLWLYSRET 277
Query: 138 KKADVHPLKFELSLFETQVLVN---TPH-GILEISSGLLGRHNIYNILXXXXXXXXXXXP 193
++ + + V+ H G ++I+S LLG NI N+L P
Sbjct: 278 DNSNYKNFVTAKGINHHRHGVSFTLMSHLGDIDITSPLLGDFNIDNLLAAISVLLIQGIP 337
Query: 194 LEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVG 253
L +I + +V A+ GR E + +VDYAHTPDAL + L + R+ + V G
Sbjct: 338 LSEIPHLVTQVSAIAGRMEATSAKNLATAVVDYAHTPDALEKALQACRQHCAGELYVVFG 397
Query: 254 CAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
C G+ D+GKRPLM + A +D ++T+DNP +ED I +D++AG
Sbjct: 398 CGGDRDKGKRPLMAQAAEKYADHLVVTNDNPRSEDAQLIANDIVAG 443
Score = 66 (28.3 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 320 PNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
P+ ++ + R AV + + GD+V++AGKGHE Y I
Sbjct: 447 PDAEQISIILEREQAVLKTLNKAKPGDIVLLAGKGHEDYVI 487
>UNIPROTKB|Q0BXT7 [details] [associations]
symbol:murE
"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase" species:228405 "Hyphomonas neptunium ATCC 15444"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
HAMAP:MF_00208 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005761 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 GO:GO:0007049 GO:GO:0009252
EMBL:CP000158 GenomeReviews:CP000158_GR Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623
HOGENOM:HOG000268118 eggNOG:COG0769 KO:K01928 GO:GO:0008765
TIGRFAMs:TIGR01085 OMA:HTMEEYA RefSeq:YP_761706.1 STRING:Q0BXT7
GeneID:4288249 KEGG:hne:HNE_3029 PATRIC:32218935
ProtClustDB:CLSK777713 BioCyc:HNEP228405:GI69-3035-MONOMER
Uniprot:Q0BXT7
Length = 478
Score = 364 (133.2 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 96/283 (33%), Positives = 132/283 (46%)
Query: 20 KLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDH 79
K++ TTPD V V M + G MEASSHGL R VD F NLT+DH
Sbjct: 137 KVDIGHTTPDPVTVSETMKALARQGVTHCAMEASSHGLEQHRLDGVDLSAVAFLNLTQDH 196
Query: 80 MDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPN--ATSFIAQGNPDVPVVTFAMEN 137
+D+H T E Y +AK +LF R + P +VN D + A A+ + VV+F
Sbjct: 197 LDYHATMEAYLDAKVRLF-RDLAPRGIPAIVNADSDHREAVEETAR-KAGLQVVSFGWRG 254
Query: 138 KKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILXXXXXXXXXXXPLEDI 197
+ + L + +T L I L+G N L +
Sbjct: 255 EDLWIDEL-MPKATGQTLFLYWKDVEQKPIELPLIGEFQTLNALAAAALCLSLGMEFPAV 313
Query: 198 VRGIEEVDAVPGRCELIDE-EQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAG 256
G+ + V GR E + + E V VDYAHTPD L LL +VR R+ + GC G
Sbjct: 314 ADGLANLKPVKGRLEFVGKTETGAAVFVDYAHTPDGLDVLLRAVRPHTAGRLKVIFGCGG 373
Query: 257 ESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+ D KRP+M +IA+ ++D I+T DNP +EDP I +L G
Sbjct: 374 DRDAKKRPIMGEIASRQADDVIVTDDNPRSEDPAKIRASVLGG 416
Score = 94 (38.1 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 331 RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
R A+ V ++GD +V+AGKGHET QI G + F D++E+ AL+
Sbjct: 426 RAEAIHAVVRELKKGDTLVIAGKGHETGQIIGSQVLPFSDQDEALAALK 474
>UNIPROTKB|P65477 [details] [associations]
symbol:murE
"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase" species:1773 "Mycobacterium tuberculosis" [GO:0005829
"cytosol" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0008765
"UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
activity" evidence=IDA] [GO:0009252 "peptidoglycan biosynthetic
process" evidence=IDA] HAMAP:MF_00208 InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005761 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005829 GO:GO:0005886 GO:GO:0005524 GO:GO:0051301
GO:GO:0008360 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006200 EMBL:BX842578 GO:GO:0007049
GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 HOGENOM:HOG000268118 eggNOG:COG0769
KO:K01928 ProtClustDB:PRK00139 GO:GO:0008765 TIGRFAMs:TIGR01085
OMA:RPLMGEA PIR:B70580 RefSeq:NP_216674.1 RefSeq:NP_336687.2
RefSeq:YP_006515577.1 PDB:2WTZ PDB:2XJA PDBsum:2WTZ PDBsum:2XJA
ProteinModelPortal:P65477 SMR:P65477 PRIDE:P65477
EnsemblBacteria:EBMYCT00000002508 EnsemblBacteria:EBMYCT00000069747
GeneID:13316969 GeneID:887252 GeneID:924244 KEGG:mtc:MT2217
KEGG:mtu:Rv2158c KEGG:mtv:RVBD_2158c PATRIC:18126632
TubercuList:Rv2158c BioCyc:MetaCyc:MONOMER-15226
EvolutionaryTrace:P65477 Uniprot:P65477
Length = 535
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 111/302 (36%), Positives = 153/302 (50%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ + G + L S TTP+A +Q ++A M+ G + VVME SSH LALGR
Sbjct: 172 GRVAGLIGTIGIRVGGAD-LPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR 230
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
F + FTNL+RDH+DFH + +Y AKA LF VV IDD +
Sbjct: 231 VDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMA 290
Query: 122 AQGNPDVPVVTFAMEN---KKADVHPLKFELSLFETQVLVNTPHGI-LEISSGLLGRHNI 177
A+ D V+ A + DV P F T + P G+ I L GR+N+
Sbjct: 291 ARA-ADAITVSAADRPAHWRATDVAPTDAGGQQF-TAI---DPAGVGHHIGIRLPGRYNV 345
Query: 178 YNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N L E V G+ E+ VPGR E ID Q F +VDYAH P+AL +L
Sbjct: 346 ANCLVALAILDTVGVSPEQAVPGLREI-RVPGRLEQIDRGQGFLALVDYAHKPEALRSVL 404
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ RR+ V G G+ D GKR M +IA +D+ ++T DNP +EDP I ++L
Sbjct: 405 TTLAH-PDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREIL 463
Query: 298 AG 299
AG
Sbjct: 464 AG 465
Score = 193 (73.0 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 51/137 (37%), Positives = 73/137 (53%)
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RR+ V G G+ D GKR M +IA +D+ ++T DNP +EDP I ++LAG
Sbjct: 412 RRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAA---- 467
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
+ G + + + RR A+R AVA GD+V++AGKGHET Q G +
Sbjct: 468 ---EVGGDAQVVEIAD---------RRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRV 515
Query: 366 EFFDDREESREALQYVD 382
FDDR E AL+ ++
Sbjct: 516 RPFDDRVELAAALEALE 532
>TIGR_CMR|SPO_1182 [details] [associations]
symbol:SPO_1182 "UDP-N-acetylmuramoylalanyl-D-glutamate-2,
6-diaminopimelate ligase" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0008765
"UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
activity" evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic
process" evidence=ISS] HAMAP:MF_00208 InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005761 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 HOGENOM:HOG000268118 KO:K01928 ProtClustDB:PRK00139
GO:GO:0008765 TIGRFAMs:TIGR01085 OMA:RPLMGEA RefSeq:YP_166429.1
ProteinModelPortal:Q5LU76 GeneID:3194562 KEGG:sil:SPO1182
PATRIC:23375671 Uniprot:Q5LU76
Length = 493
Score = 343 (125.8 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 90/277 (32%), Positives = 133/277 (48%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP+ + + +A+ + NG MEASSHGL R V A FTN T+DH+D+H T
Sbjct: 156 TTPEPITLHRCLAEAVANGVTHAAMEASSHGLEQRRLDGVVLKAAGFTNFTQDHLDYHET 215
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF--IAQGNPDVPVVTFAMENKKADVH 143
E Y AKA LF R++ P+ V+N+DDP IA V+T +
Sbjct: 216 FEAYFAAKAGLFRRVLPPDGVA-VINMDDPKGAEMRAIAAARGQ-NVLTVGRGPCDLSLT 273
Query: 144 PLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILXXXXXXXXXXXPLEDIVRGIEE 203
+F+ + +L + + L+G NIL E + +
Sbjct: 274 NQRFDAT--GQDLLFSWRGKAYQARLDLIGGFQAENILLACGLVIASGGAPERVFETLPH 331
Query: 204 VDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGK 262
+ V GR +L V VDY+HTPDA++ L ++R R++ +VG G+ D K
Sbjct: 332 LGTVRGRMQLAATRANGAAVFVDYSHTPDAVATALRALRPHVMGRLVAIVGAGGDRDPYK 391
Query: 263 RPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
RPLM K A + +D+ I+T DNP +EDP I ++ G
Sbjct: 392 RPLMGKAAVENADIVIITDDNPRSEDPALIRAAVMQG 428
Score = 87 (35.7 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 331 RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
R A+ V E GD +++ GKGHET Q+ GD+ FDD E++ A+
Sbjct: 438 RAEAILRGVDTLEPGDALLICGKGHETGQVVGDQVLPFDDVEQASIAV 485
>TIGR_CMR|CJE_1813 [details] [associations]
symbol:CJE_1813
"UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
ligase" species:195099 "Campylobacter jejuni RM1221" [GO:0008765
"UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
activity" evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic
process" evidence=ISS] HAMAP:MF_00208 InterPro:IPR004101
InterPro:IPR005761 InterPro:IPR013221 InterPro:IPR018109
Pfam:PF02875 Pfam:PF08245 PROSITE:PS01011 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360
GO:GO:0007049 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 GO:GO:0004326 HOGENOM:HOG000268118 eggNOG:COG0769
KO:K01928 ProtClustDB:PRK00139 GO:GO:0008765 TIGRFAMs:TIGR01085
OMA:GALAYVD GO:GO:0046901 RefSeq:YP_179783.1
ProteinModelPortal:Q5HSF2 STRING:Q5HSF2 GeneID:3232440
KEGG:cjr:CJE1813 PATRIC:20045448
BioCyc:CJEJ195099:GJC0-1847-MONOMER Uniprot:Q5HSF2
Length = 427
Score = 255 (94.8 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 73/243 (30%), Positives = 115/243 (47%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G+ + +I+ + E TT + + + +ME SSH L
Sbjct: 84 LGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALIQN 143
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R ++F +FTN+T+DH+DFHGT E Y+ AK F+ + K +N D A F
Sbjct: 144 RIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFFT-----DESLKFIN-KDALAIKF 197
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFE-TQVLVNTPHGILEISSGLLGRHNIYN 179
+ T+ +EN ++ +K SL E +V + I S LLG N+YN
Sbjct: 198 NVRN-----AFTYGIENPA--LYQIK-AYSLEEGISAIVTNKNQTFHIDSPLLGLFNLYN 249
Query: 180 ILXXXXXXXXXXXP-LEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
+L P L+D+ + I V GR E + A GVIVD+AHTPD + ++LD
Sbjct: 250 LLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQV----AKGVIVDFAHTPDGIEKVLD 305
Query: 239 SVR 241
+++
Sbjct: 306 TLK 308
Score = 250 (93.1 bits), Expect = 5.3e-24, Sum P(2) = 5.3e-24
Identities = 61/170 (35%), Positives = 96/170 (56%)
Query: 132 TFAMENKKADVHPLKFELSLFE-TQVLVNTPHGILEISSGLLGRHNIYNILXXXXXXXXX 190
T+ +EN ++ +K SL E +V + I S LLG N+YN+L
Sbjct: 204 TYGIENPA--LYQIK-AYSLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNEL 260
Query: 191 XXP-LEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRII 249
P L+D+ + I V GR E + A GVIVD+AHTPD + ++LD+++ +++I
Sbjct: 261 VKPDLKDLEKAISGFGGVCGRVEQV----AKGVIVDFAHTPDGIEKVLDTLKN---KKLI 313
Query: 250 TVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
V G G+ D+ KRPLM KI + + I+TSDNP +E+P I++++L+G
Sbjct: 314 VVFGAGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSG 363
Score = 80 (33.2 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 325 LFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ-IEGDKKEFFD 369
L + D R+ A++ A+ + E D+VV+ GKG ET Q I+G K F D
Sbjct: 371 LMIED-RKEAIKKALELKENDDLVVILGKGDETTQEIKGIKYPFSD 415
>TIGR_CMR|GSU_3068 [details] [associations]
symbol:GSU_3068 "UDP-N-acetylmuramate--alanine ligase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008763
"UDP-N-acetylmuramate-L-alanine ligase activity" evidence=ISS]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
HAMAP:MF_00046 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005758 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524
GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720
GO:GO:0007049 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 KO:K01924 ProtClustDB:PRK00421
GO:GO:0008763 PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082
HOGENOM:HOG000256031 OMA:YQPHRYS RefSeq:NP_954110.1
ProteinModelPortal:P61679 GeneID:2686325 KEGG:gsu:GSU3068
PATRIC:22028987 BioCyc:GSUL243231:GH27-3017-MONOMER Uniprot:P61679
Length = 462
Score = 148 (57.2 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 64/253 (25%), Positives = 106/253 (41%)
Query: 69 IAVFTNLTRDHMDFH-GTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
IAV TN+ DH+DF+ G E+ ++ +++ P V+ ++D N IA+ P
Sbjct: 175 IAVVTNIDADHLDFYTGGIEQIKDTFVDFINKI--PFYGLAVLCLEDRN----IAEILPR 228
Query: 128 VP--VVTFAMENKKADVHPLKFELSLFETQVLVNTP-HGILEISSGLLGRHNIYNILXXX 184
V VT+ + ++ AD+ L T + + + + E+S + G HN+ N L
Sbjct: 229 VKKRFVTYGLSSQ-ADIRATHIRLEGGTTSFVAHYKGYRMGEVSFSMPGAHNVLNALACI 287
Query: 185 XXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELA 244
P I G V R ++ E V+ DY H P + L + +
Sbjct: 288 AVAMELDVPFSQIQEGFATFGGVGRRFQVKGEVNGITVVDDYGHHPAEIRATLAAGKSGW 347
Query: 245 PRRIITVVGCAGESDRGKRPLMTKIATD--KSDVTILTSDNPMNEDPLD-ILDDMLAGVG 301
P R + V R R L + T +DV +LT P E P++ + + LA
Sbjct: 348 PERRLVVAFQPHRFSR-TRELFAEFVTCFYDADVLVLTDIYPAGEAPIEGVSAERLA--- 403
Query: 302 WTMQEYLKYGEND 314
+E K+G+ D
Sbjct: 404 ---EEIRKHGQRD 413
>UNIPROTKB|Q48EF4 [details] [associations]
symbol:murF
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0047480 "UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine
ligase activity" evidence=ISS] InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005863 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360
GO:GO:0007049 EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0770 HOGENOM:HOG000268120 KO:K01929
OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766 PANTHER:PTHR23135:SF3
TIGRFAMs:TIGR01143 RefSeq:YP_276234.1 ProteinModelPortal:Q48EF4
STRING:Q48EF4 GeneID:3555860 KEGG:psp:PSPPH_4112 PATRIC:19977689
ProtClustDB:CLSK868642 Uniprot:Q48EF4
Length = 456
Score = 146 (56.5 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 60/239 (25%), Positives = 102/239 (42%)
Query: 44 GTEAVVME-ASSHGLA---LG--RCSEVDFDI-------AVFTNLTRDHMDFHGTEEEYR 90
G ++E AS H A LG R E+ F + A+ TN H+ G ++
Sbjct: 143 GVPLTLLELASEHSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIV 202
Query: 91 NAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ-GNPDVPVVTFAMENKKADVHPLKFEL 149
AK ++ + V+N++D + + GN ++ +TFA+ + AD+H
Sbjct: 203 EAKGEILEGL--NASGTAVLNLEDKAFPVWRKRAGNRNI--LTFALADPAADLHASDLSN 258
Query: 150 SLFETQ-VLVNTPHGILEISSGLLGRHNIYNILXXXXXXXXXXXPLEDIVRGIEEVDAVP 208
+N+P G+ ++ LLG HN+ N L LE IV G+ V V
Sbjct: 259 DARGCPGFTINSPLGVAQVQLNLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVK 318
Query: 209 GRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVRELAPRRIITV--VGCAGE-SDRGKR 263
GR + VI D Y P +++ +D + R ++ + +G GE +++G R
Sbjct: 319 GRAVVQIASNGTRVIDDTYNANPASINAAVDILTGFTGRTVLVLGDIGELGEWAEQGHR 377
>TIGR_CMR|CPS_4464 [details] [associations]
symbol:CPS_4464 "UDP-N-acetylmuramate--alanine ligase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008763
"UDP-N-acetylmuramate-L-alanine ligase activity" evidence=ISS]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
HAMAP:MF_00046 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005758 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524
GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720
GO:GO:0007049 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 KO:K01924 GO:GO:0008763
PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082 HOGENOM:HOG000256031
OMA:YQPHRYS RefSeq:YP_271112.1 ProteinModelPortal:Q47VR0 SMR:Q47VR0
STRING:Q47VR0 GeneID:3522903 KEGG:cps:CPS_4464 PATRIC:21471761
BioCyc:CPSY167879:GI48-4473-MONOMER Uniprot:Q47VR0
Length = 503
Score = 133 (51.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 52/193 (26%), Positives = 90/193 (46%)
Query: 69 IAVFTNLTRDHMD-FHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
++V TN+ DHM+ + G E+ ++ + + P VV ID+P + + +
Sbjct: 198 VSVITNIDADHMETYQGDFEKLKDTYIEFLHNL--PFYGLAVVCIDNPVVRELLPRISRQ 255
Query: 128 VPVVTFAMENKKADVHPLKFE----LSLFETQVLVNTPHGILEISSGLLGRHNIYNILXX 183
V +T+ +K ADV + ++ +S F +V P LE+S L G+HN+ N L
Sbjct: 256 V--ITYGF-SKDADVRAVNYQQNGAVSHFTVEVEGQEP---LEMSVNLPGQHNVLNALAG 309
Query: 184 XXXXXXXXXPLEDIVRGIEEVDAVPGRCE-LIDEEQAFG--VIVD-YAHTPDALSRLLDS 239
E I + + E + + R E L D A G V+VD Y H P + + +
Sbjct: 310 VAVAKDEGVNDEAICKALTEFEGIGRRFEKLTDFSTAAGDMVLVDDYGHHPSEVKATILA 369
Query: 240 VRELAP-RRIITV 251
+R+ P +R++ V
Sbjct: 370 MRQGWPDKRLVMV 382
>UNIPROTKB|Q9KPG3 [details] [associations]
symbol:VC_2405
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0007049
GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 KO:K01929 OMA:GNRNNEI GO:GO:0047480
GO:GO:0008766 PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 HSSP:P11880
PIR:A82082 RefSeq:NP_232035.1 ProteinModelPortal:Q9KPG3
DNASU:2613074 GeneID:2613074 KEGG:vch:VC2405 PATRIC:20083831
ProtClustDB:CLSK874790 Uniprot:Q9KPG3
Length = 453
Score = 131 (51.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 43/179 (24%), Positives = 81/179 (45%)
Query: 40 MLHNGTE---AVVMEASSH-GLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAK 95
+L + TE AV+ ++H G + V D+A+ N+ H++ G+ + + AK +
Sbjct: 145 LLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGVKRAKGE 204
Query: 96 LFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELS-LFET 154
++ + +VN+D N + D V TF+ + AD +P L+ L
Sbjct: 205 IYQGL--QAGAVAIVNLDS-NGGDYWKAVLADKTVKTFSATDHNADFYPRDVRLNALGIA 261
Query: 155 QVLVNTPHGILEISSGLLGRHNIYNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCEL 213
+ TP G + + G++G+HN+ N L L +I +G+ + V GR ++
Sbjct: 262 SFTLVTPVGEVGVELGIMGQHNVANALAAAALSLEMGASLAEIGQGLAHLSKVKGRVDM 320
>TIGR_CMR|VC_2405 [details] [associations]
symbol:VC_2405
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
l-D-alanyl ligase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0007049
GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 KO:K01929 OMA:GNRNNEI GO:GO:0047480
GO:GO:0008766 PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 HSSP:P11880
PIR:A82082 RefSeq:NP_232035.1 ProteinModelPortal:Q9KPG3
DNASU:2613074 GeneID:2613074 KEGG:vch:VC2405 PATRIC:20083831
ProtClustDB:CLSK874790 Uniprot:Q9KPG3
Length = 453
Score = 131 (51.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 43/179 (24%), Positives = 81/179 (45%)
Query: 40 MLHNGTE---AVVMEASSH-GLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAK 95
+L + TE AV+ ++H G + V D+A+ N+ H++ G+ + + AK +
Sbjct: 145 LLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGVKRAKGE 204
Query: 96 LFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELS-LFET 154
++ + +VN+D N + D V TF+ + AD +P L+ L
Sbjct: 205 IYQGL--QAGAVAIVNLDS-NGGDYWKAVLADKTVKTFSATDHNADFYPRDVRLNALGIA 261
Query: 155 QVLVNTPHGILEISSGLLGRHNIYNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCEL 213
+ TP G + + G++G+HN+ N L L +I +G+ + V GR ++
Sbjct: 262 SFTLVTPVGEVGVELGIMGQHNVANALAAAALSLEMGASLAEIGQGLAHLSKVKGRVDM 320
>TIGR_CMR|BA_4051 [details] [associations]
symbol:BA_4051 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:198094 "Bacillus anthracis str. Ames" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 RefSeq:NP_846291.1 RefSeq:YP_020693.1
RefSeq:YP_030014.1 ProteinModelPortal:Q81WC9 IntAct:Q81WC9
DNASU:1086094 EnsemblBacteria:EBBACT00000009521
EnsemblBacteria:EBBACT00000014653 EnsemblBacteria:EBBACT00000023364
GeneID:1086094 GeneID:2819652 GeneID:2850427 KEGG:ban:BA_4051
KEGG:bar:GBAA_4051 KEGG:bat:BAS3763 eggNOG:COG0771
HOGENOM:HOG000049428 KO:K01925 OMA:RCGELDV ProtClustDB:PRK02472
BioCyc:BANT260799:GJAJ-3821-MONOMER
BioCyc:BANT261594:GJ7F-3939-MONOMER GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 Uniprot:Q81WC9
Length = 450
Score = 129 (50.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 48/169 (28%), Positives = 69/169 (40%)
Query: 46 EAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPER 105
E VV E SS L +G IA F NL H+D+HGT++EY AKA +F E
Sbjct: 162 EVVVTELSSFQL-MG-VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT--EN 217
Query: 106 HRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL 165
V+N DD + + A V F+ + D +K F+ + +V +L
Sbjct: 218 DYSVINADDADVMALSAYSKGQK--VLFSTTKEIEDGACIKDNALYFKAEKVVEVDDIVL 275
Query: 166 EISSGLLGRHNIYNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELI 214
G+HN+ NIL E I ++ V R E +
Sbjct: 276 P------GQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYV 318
>TIGR_CMR|CHY_2071 [details] [associations]
symbol:CHY_2071 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase
activity" evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic
process" evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101
InterPro:IPR005762 InterPro:IPR006367 InterPro:IPR013221
Pfam:PF02875 Pfam:PF08245 Pfam:PF13241 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0007049 GO:GO:0009252 GO:GO:0019354
GO:GO:0043115 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0771 HOGENOM:HOG000049428
KO:K01925 OMA:RCGELDV GO:GO:0008764 PANTHER:PTHR23135:SF2
TIGRFAMs:TIGR01087 RefSeq:YP_360890.1 STRING:Q3AAE4 GeneID:3727011
KEGG:chy:CHY_2071 PATRIC:21277223 ProtClustDB:PRK14106
BioCyc:CHYD246194:GJCN-2070-MONOMER Uniprot:Q3AAE4
Length = 451
Score = 129 (50.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 65/241 (26%), Positives = 103/241 (42%)
Query: 46 EAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPER 105
+AV +E SS L + + +AV NLT DH+D H T E Y AKA++F ++ +R
Sbjct: 156 DAVSLEVSSFQLETIKSFKPK--VAVLLNLTPDHLDRHKTLEGYLEAKARIF---INQDR 210
Query: 106 HR-KVVNIDDPNATSFIAQGNPDVPVVTFAM-ENKKADVHPLKFELSLFETQVLVNTPHG 163
V+N DDP S + + P V F+ E + V K ++ + V
Sbjct: 211 TDVTVLNYDDPRIRS-LGRKTPG-RVFYFSQKEELEEGVFVKKGKIVVRSLGV----EEE 264
Query: 164 ILEISS-GLLGRHNIYNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGV 222
I++I + L G HN+ N L ++I RG+ V R E + E
Sbjct: 265 IIDIENLPLPGPHNLENALATVAACWSFGVSGKNIERGLRNFQGVAHRLEKVAEINGVLY 324
Query: 223 IVDYAHT-PDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTS 281
+ D T PD+ + L+S R I+ + G G + + + +K TIL
Sbjct: 325 VNDSKGTNPDSTIKALNSYE----RPIVLIAG--GRNKGNSFGELAREIREKVRFTILVG 378
Query: 282 D 282
+
Sbjct: 379 E 379
>TIGR_CMR|SPO_1187 [details] [associations]
symbol:SPO_1187 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0771 HOGENOM:HOG000049428 KO:K01925
OMA:RCGELDV GO:GO:0008764 PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087
RefSeq:YP_166434.1 ProteinModelPortal:Q5LU71 GeneID:3195454
KEGG:sil:SPO1187 PATRIC:23375679 ProtClustDB:PRK01390
Uniprot:Q5LU71
Length = 466
Score = 126 (49.4 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 51/202 (25%), Positives = 83/202 (41%)
Query: 48 VVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR 107
VV+E SS+ L R + D+AVFTNL+ DH+D HG Y AK +LF+ P+R
Sbjct: 171 VVLELSSYQTDLARA--LTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEG-GPDR-- 225
Query: 108 KVVNIDDPNATSFIAQ---GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI 164
V+ +D+ Q G D V+ ++ K F + ++ G
Sbjct: 226 AVIGVDESEGLYLAGQMSEGPGDDRVIRVSVSRKLTGPGWQVFARKGYLSEYRKGRQAGS 285
Query: 165 LEISS--GLLGRHNIYNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGV 222
+++ GL G HN N + I G+ +P R +++ E
Sbjct: 286 IDLRDIRGLPGAHNHQNACAAYAACRALGLSPKAIEAGMRSYPGLPHRSQIVAEAGGVTY 345
Query: 223 IVDYAHTP-DALSRLLDSVREL 243
+ D T DA + L + + +
Sbjct: 346 VNDSKATNVDAALKALGAFKRI 367
>UNIPROTKB|Q2GEF7 [details] [associations]
symbol:NSE_0245 "Putative uncharacterized protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004101 InterPro:IPR013221 Pfam:PF08245 GO:GO:0005524
GO:GO:0009058 GO:GO:0016874 EMBL:CP000237 GenomeReviews:CP000237_GR
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0769 KO:K01928 OMA:GMDMRAL
RefSeq:YP_506139.1 STRING:Q2GEF7 GeneID:3932071 KEGG:nse:NSE_0245
PATRIC:22680581 HOGENOM:HOG000127323 ProtClustDB:CLSK2527621
BioCyc:NSEN222891:GHFU-275-MONOMER Uniprot:Q2GEF7
Length = 469
Score = 126 (49.4 bits), Expect = 6.5e-05, P = 6.4e-05
Identities = 60/258 (23%), Positives = 108/258 (41%)
Query: 29 DAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEE 88
DA + +++ + E + S + V+ A F+NL RD ++ ++
Sbjct: 147 DAADMYSILDDLAGRRIEYCCLAISGAAIESRMIDSVNLKAAAFSNLLRDDLEQPEDIDK 206
Query: 89 YRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFE 148
K +L S ++ PE V+ + T I Q P+ V T+ +D+ + +
Sbjct: 207 RFQMKVRLLSEVL-PEDGIMVLPVASEYTTRII-QHCPNKKVCTYGRAT--SDIQLIS-Q 261
Query: 149 LSLFETQVLVNTPHGI-LEISSGLLGRHNIYNILXXXXXXXXXXXPLEDIVRGIEEVDAV 207
L + Q+L G + I + +LG+ + N++ I E++ +
Sbjct: 262 LPTQKGQILTMKVLGKEMVIHTNILGKFHGNNLVTAMGLAISCGIDPSSIEH--EQISPL 319
Query: 208 PGRCELIDEE-QAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPL- 265
G E ++E + ++ D A TP L LL S++ P +T+V E+ GK L
Sbjct: 320 AGYMEFLEEYGEERKIMTDCAQTPSELHDLLLSIKWHFPYNDVTLVLRCSENYEGKNTLK 379
Query: 266 MTKIATDKSDVTILTSDN 283
M KIA + I TSD+
Sbjct: 380 MAKIAAKMVNRIIFTSDS 397
>TIGR_CMR|NSE_0245 [details] [associations]
symbol:NSE_0245 "conserved hypothetical protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004101 InterPro:IPR013221 Pfam:PF08245 GO:GO:0005524
GO:GO:0009058 GO:GO:0016874 EMBL:CP000237 GenomeReviews:CP000237_GR
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0769 KO:K01928 OMA:GMDMRAL
RefSeq:YP_506139.1 STRING:Q2GEF7 GeneID:3932071 KEGG:nse:NSE_0245
PATRIC:22680581 HOGENOM:HOG000127323 ProtClustDB:CLSK2527621
BioCyc:NSEN222891:GHFU-275-MONOMER Uniprot:Q2GEF7
Length = 469
Score = 126 (49.4 bits), Expect = 6.5e-05, P = 6.4e-05
Identities = 60/258 (23%), Positives = 108/258 (41%)
Query: 29 DAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEE 88
DA + +++ + E + S + V+ A F+NL RD ++ ++
Sbjct: 147 DAADMYSILDDLAGRRIEYCCLAISGAAIESRMIDSVNLKAAAFSNLLRDDLEQPEDIDK 206
Query: 89 YRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFE 148
K +L S ++ PE V+ + T I Q P+ V T+ +D+ + +
Sbjct: 207 RFQMKVRLLSEVL-PEDGIMVLPVASEYTTRII-QHCPNKKVCTYGRAT--SDIQLIS-Q 261
Query: 149 LSLFETQVLVNTPHGI-LEISSGLLGRHNIYNILXXXXXXXXXXXPLEDIVRGIEEVDAV 207
L + Q+L G + I + +LG+ + N++ I E++ +
Sbjct: 262 LPTQKGQILTMKVLGKEMVIHTNILGKFHGNNLVTAMGLAISCGIDPSSIEH--EQISPL 319
Query: 208 PGRCELIDEE-QAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPL- 265
G E ++E + ++ D A TP L LL S++ P +T+V E+ GK L
Sbjct: 320 AGYMEFLEEYGEERKIMTDCAQTPSELHDLLLSIKWHFPYNDVTLVLRCSENYEGKNTLK 379
Query: 266 MTKIATDKSDVTILTSDN 283
M KIA + I TSD+
Sbjct: 380 MAKIAAKMVNRIIFTSDS 397
>TIGR_CMR|BA_0246 [details] [associations]
symbol:BA_0246
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
l-D-alanyl ligase" species:198094 "Bacillus anthracis str. Ames"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 KO:K01929 OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766
PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 HOGENOM:HOG000268119
RefSeq:NP_842799.1 RefSeq:YP_016852.1 RefSeq:YP_026517.1
HSSP:P11880 ProteinModelPortal:Q81VG1 DNASU:1086792
EnsemblBacteria:EBBACT00000011973 EnsemblBacteria:EBBACT00000015874
EnsemblBacteria:EBBACT00000023828 GeneID:1086792 GeneID:2818849
GeneID:2852828 KEGG:ban:BA_0246 KEGG:bar:GBAA_0246 KEGG:bat:BAS0232
ProtClustDB:CLSK886741 BioCyc:BANT260799:GJAJ-254-MONOMER
BioCyc:BANT261594:GJ7F-262-MONOMER Uniprot:Q81VG1
Length = 458
Score = 125 (49.1 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 48/196 (24%), Positives = 79/196 (40%)
Query: 41 LHNGTEAVVMEA--SSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFS 98
L TE V+E SS G + A+ TN+ H+ G+ E AK ++ +
Sbjct: 154 LEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVT 213
Query: 99 RMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLV 158
+ E V N D+P T+ + + N VTF + + D +P L T +
Sbjct: 214 GL--QEGGVFVYNGDEPLLTNRVPEMNLIAETVTFG-DARANDYYPTTVTLQATGTHFKM 270
Query: 159 NTPHGILEISSGLLGRHNIYNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQ 218
N I +LG+HN+YN L E++ G+ + R E++ +
Sbjct: 271 NREENI-SFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDS 329
Query: 219 AFGVIVD-YAHTPDAL 233
+I D Y +P A+
Sbjct: 330 GLTIINDAYNASPTAM 345
>UNIPROTKB|Q9KPG5 [details] [associations]
symbol:murD "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase
activity" evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic
process" evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101
InterPro:IPR005762 InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0771 KO:K01925 OMA:RCGELDV GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 PIR:G82081
RefSeq:NP_232033.2 ProteinModelPortal:Q9KPG5 SMR:Q9KPG5
DNASU:2613072 GeneID:2613072 KEGG:vch:VC2403 PATRIC:20083827
ProtClustDB:PRK04663 Uniprot:Q9KPG5
Length = 440
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 45/182 (24%), Positives = 73/182 (40%)
Query: 46 EAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPER 105
E V+E SS L S + A F NL+ DHMD + E+YR AK ++F
Sbjct: 156 ELYVLELSS--FQLETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHA----- 208
Query: 106 HRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFE-TQVLVNTPHGI 164
VVN DD T + VVTF +E +F L+ + + L +
Sbjct: 209 ETAVVNADD---TQTFPDHAAHLQVVTFGVEQAA------QFSLAQHQGREYLFARDEAV 259
Query: 165 LEISS-GLLGRHNIYNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVI 223
+ + L+GRHN+ N+L + ++ + RC+++ + +
Sbjct: 260 MACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADNHGIKWV 319
Query: 224 VD 225
D
Sbjct: 320 ND 321
>TIGR_CMR|VC_2403 [details] [associations]
symbol:VC_2403 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0771 KO:K01925 OMA:RCGELDV GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 PIR:G82081
RefSeq:NP_232033.2 ProteinModelPortal:Q9KPG5 SMR:Q9KPG5
DNASU:2613072 GeneID:2613072 KEGG:vch:VC2403 PATRIC:20083827
ProtClustDB:PRK04663 Uniprot:Q9KPG5
Length = 440
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 45/182 (24%), Positives = 73/182 (40%)
Query: 46 EAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPER 105
E V+E SS L S + A F NL+ DHMD + E+YR AK ++F
Sbjct: 156 ELYVLELSS--FQLETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHA----- 208
Query: 106 HRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFE-TQVLVNTPHGI 164
VVN DD T + VVTF +E +F L+ + + L +
Sbjct: 209 ETAVVNADD---TQTFPDHAAHLQVVTFGVEQAA------QFSLAQHQGREYLFARDEAV 259
Query: 165 LEISS-GLLGRHNIYNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVI 223
+ + L+GRHN+ N+L + ++ + RC+++ + +
Sbjct: 260 MACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADNHGIKWV 319
Query: 224 VD 225
D
Sbjct: 320 ND 321
>UNIPROTKB|P11880 [details] [associations]
symbol:murF species:83333 "Escherichia coli K-12"
[GO:0047480 "UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine
ligase activity" evidence=IEA;IDA] [GO:0009058 "biosynthetic
process" evidence=IEA] [GO:0008766
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
-D-alanine ligase activity" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0008360 "regulation of cell shape"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0071555
"cell wall organization" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005863 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0007049 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 EMBL:X55034 EMBL:X15432 EMBL:U67891
EMBL:U67893 PIR:F64730 RefSeq:NP_414628.1 RefSeq:YP_488391.1
PDB:1GG4 PDBsum:1GG4 ProteinModelPortal:P11880 SMR:P11880
DIP:DIP-10281N IntAct:P11880 MINT:MINT-1227223 PRIDE:P11880
EnsemblBacteria:EBESCT00000003335 EnsemblBacteria:EBESCT00000003336
EnsemblBacteria:EBESCT00000003337 EnsemblBacteria:EBESCT00000003338
EnsemblBacteria:EBESCT00000015539 GeneID:12932648 GeneID:944813
KEGG:ecj:Y75_p0085 KEGG:eco:b0086 PATRIC:32115277 EchoBASE:EB0617
EcoGene:EG10622 eggNOG:COG0770 HOGENOM:HOG000268120 KO:K01929
OMA:GNRNNEI ProtClustDB:PRK10773
BioCyc:EcoCyc:UDP-NACMURALGLDAPAALIG-MONOMER
BioCyc:ECOL316407:JW0084-MONOMER
BioCyc:MetaCyc:UDP-NACMURALGLDAPAALIG-MONOMER SABIO-RK:P11880
BindingDB:P11880 ChEMBL:CHEMBL2540 EvolutionaryTrace:P11880
Genevestigator:P11880 GO:GO:0047480 GO:GO:0008766
PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 Uniprot:P11880
Length = 452
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 46/192 (23%), Positives = 85/192 (44%)
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ-GNP 126
+ A+ NL H++ G+ AK ++FS + PE ++N D+ + ++ + G+
Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL--PENGIAIMNADNNDWLNWQSVIGSR 234
Query: 127 DVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILXXXXX 186
V F+ +D ++ T+ + TP G +++ L GRHNI N L
Sbjct: 235 KV--WRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAAL 292
Query: 187 XXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVRELAP 245
L+ I G+ + AVPGR I + ++ D Y +++ + + E+
Sbjct: 293 SMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPG 352
Query: 246 RRIITVVGCAGE 257
R++ VVG E
Sbjct: 353 YRVL-VVGDMAE 363
>TIGR_CMR|CBU_0131 [details] [associations]
symbol:CBU_0131 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:227377 "Coxiella burnetii RSA 493" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 GO:GO:0007049 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0009252 Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0771
KO:K01925 OMA:RCGELDV GO:GO:0008764 PANTHER:PTHR23135:SF2
TIGRFAMs:TIGR01087 HOGENOM:HOG000049427 RefSeq:NP_819181.1
ProteinModelPortal:Q83F20 PRIDE:Q83F20 GeneID:1208002
KEGG:cbu:CBU_0131 PATRIC:17928945 ProtClustDB:PRK03803
BioCyc:CBUR227377:GJ7S-134-MONOMER Uniprot:Q83F20
Length = 442
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 49/226 (21%), Positives = 99/226 (43%)
Query: 70 AVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVP 129
A N++ DHM+ + T ++Y AK ++++ P +VN D+P + P
Sbjct: 176 ATILNISEDHMNRYATLQDYLRAKQRIYTDCFIP-----IVNADEPEIWRHLPFNKK--P 228
Query: 130 VVTFAMENKKADV----HPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILXXXX 185
+ +F + N AD H K ++ ++ ++L+ P I E+ L RH++ N L
Sbjct: 229 L-SFGLNNA-ADFSLAEHNQKTSIA-YQGKILM--P--IQELK--LNARHHLQNALAALA 279
Query: 186 XXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL-LDSVRELA 244
P+E+++ + + + RC+ + + + D T +R ++S+ + A
Sbjct: 280 LGTAAKIPIENMLHVLRDFSGIRHRCQWVRKYKEIDYYNDSKGTNVGATRAAIESLGQAA 339
Query: 245 PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPL 290
++I + G G+ PL + V ++ D P+ E L
Sbjct: 340 KGQLILIAGGQGKG-ADFSPLKDVVKRYVKQVILIGEDAPLLEKTL 384
>TIGR_CMR|CBU_0124 [details] [associations]
symbol:CBU_0124
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
l-D-alanyl ligase" species:227377 "Coxiella burnetii RSA 493"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 GO:GO:0007049 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 HOGENOM:HOG000268120 KO:K01929
OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766 PANTHER:PTHR23135:SF3
TIGRFAMs:TIGR01143 HSSP:P11880 RefSeq:NP_819174.1
ProteinModelPortal:Q83F27 GeneID:1207995 KEGG:cbu:CBU_0124
PATRIC:17928933 ProtClustDB:CLSK913851
BioCyc:CBUR227377:GJ7S-129-MONOMER Uniprot:Q83F27
Length = 446
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 52/197 (26%), Positives = 88/197 (44%)
Query: 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDV 128
+A+ TN H++ G+ E AK ++F + V+N DD A F +
Sbjct: 176 VAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGT--AVINNDDHFA-EFWRRLAHSR 232
Query: 129 PVVTFAMENKKADVHPLKFELSLFETQVL-VNTPHGILEISSGLLGRHNIYNILXXXXXX 187
+++F + N+ ADV L+ + P G LEI L+G HN+ N L
Sbjct: 233 RIISFGI-NQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAAA 291
Query: 188 XXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFG-VIVDYAHTPDALSRLLDSVRELA-- 244
+ I G+E V V GR L++++ G +I+D ++ + LS + ++ LA
Sbjct: 292 YAQQLSTDAIKAGLESVVPVKGR--LVEQKGYRGAIIIDDSYNANPLS-VSAAIAVLAKR 348
Query: 245 PRRIITVVGCAGESDRG 261
P + V+G E +G
Sbjct: 349 PGHSVLVLGDMLELGQG 365
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 402 391 0.00094 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 606 (64 KB)
Total size of DFA: 242 KB (2131 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.54u 0.16s 31.70t Elapsed: 00:00:02
Total cpu time: 31.54u 0.16s 31.70t Elapsed: 00:00:02
Start: Sat May 11 00:07:08 2013 End: Sat May 11 00:07:10 2013