BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041678
(402 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224058479|ref|XP_002299528.1| predicted protein [Populus trichocarpa]
gi|222846786|gb|EEE84333.1| predicted protein [Populus trichocarpa]
Length = 777
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/402 (91%), Positives = 387/402 (96%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MGLRTGMLS+V+YYIHGDNKLE+P T P A++VQNLMAKMLHNGTEAVVMEA+S GLALG
Sbjct: 376 MGLRTGMLSTVAYYIHGDNKLEAPNTIPGAILVQNLMAKMLHNGTEAVVMEATSQGLALG 435
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
RC EVDFDIAVFTNLTRDH+DFHGTEEEY+NAKAKLF+RMVDPERHRKVVN+DDPNA F
Sbjct: 436 RCDEVDFDIAVFTNLTRDHLDFHGTEEEYKNAKAKLFARMVDPERHRKVVNVDDPNAPFF 495
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
IAQGN +VPVVTFAMENK ADVHPLK+ELSLFETQVLVNTPHGILEISSGLLG+HNIYNI
Sbjct: 496 IAQGNQEVPVVTFAMENKNADVHPLKYELSLFETQVLVNTPHGILEISSGLLGKHNIYNI 555
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAAVAVGIAVGAPLEDIVRGIEE+DAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV
Sbjct: 556 LAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 615
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
REL P+RIITV+GC GE DRGKRP+MTKIATDKSD+TILTSDNP EDPLDILDDMLAGV
Sbjct: 616 RELRPKRIITVIGCGGERDRGKRPIMTKIATDKSDMTILTSDNPRGEDPLDILDDMLAGV 675
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
GW+MQEYLK+GENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI
Sbjct: 676 GWSMQEYLKHGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 735
Query: 361 EGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
EGDKKEFFDDREE REALQYVDELHQAGIDTSEFPWRLPESH
Sbjct: 736 EGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 777
>gi|365222938|gb|AEW69821.1| Hop-interacting protein THI138 [Solanum lycopersicum]
Length = 771
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/402 (90%), Positives = 384/402 (95%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MGLRTGMLS+V YYI+GDNKLESP TTPDAV+VQ LMAKM+HNGTEA+VMEASSHGLA+G
Sbjct: 370 MGLRTGMLSTVGYYIYGDNKLESPHTTPDAVLVQKLMAKMVHNGTEALVMEASSHGLAVG 429
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
RC EVDFDIAVFTNLTRDH+DFHGTEEEYR+AKAKLF+RMVDP RHRK+VNIDD NAT F
Sbjct: 430 RCDEVDFDIAVFTNLTRDHLDFHGTEEEYRDAKAKLFARMVDPARHRKIVNIDDTNATFF 489
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+AQGNPDVPVVTFAM+NK ADVHPLKF+LSLFETQVLVNTP GILEISSGLLGRHNIYNI
Sbjct: 490 VAQGNPDVPVVTFAMDNKSADVHPLKFQLSLFETQVLVNTPQGILEISSGLLGRHNIYNI 549
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAAVAVGIAVGAPLEDIV+GIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD V
Sbjct: 550 LAAVAVGIAVGAPLEDIVKGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDYV 609
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
REL PRR+ITV GCAGESDRGKRP+M KIATDKSDVTILTSDNP EDPLDILDDMLAGV
Sbjct: 610 RELGPRRVITVFGCAGESDRGKRPIMAKIATDKSDVTILTSDNPKTEDPLDILDDMLAGV 669
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
GWTMQ+YLKYGENDYYPPLPNGHRLF+HDIRRVAVRC VAMGEEGD+VVVAGKGHE +QI
Sbjct: 670 GWTMQDYLKYGENDYYPPLPNGHRLFVHDIRRVAVRCGVAMGEEGDIVVVAGKGHEAFQI 729
Query: 361 EGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
EG+K+EFFDDREE REALQYVDELHQAGIDTSEFPWRLPESH
Sbjct: 730 EGEKREFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 771
>gi|255537491|ref|XP_002509812.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
putative [Ricinus communis]
gi|223549711|gb|EEF51199.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
putative [Ricinus communis]
Length = 780
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/401 (91%), Positives = 384/401 (95%), Gaps = 1/401 (0%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MGLRTGM S+V+YY+HGDNKLESP TTPDAV+VQNLMAKMLHNGTEAVVMEASSHGLA G
Sbjct: 375 MGLRTGMFSTVAYYVHGDNKLESPNTTPDAVLVQNLMAKMLHNGTEAVVMEASSHGLASG 434
Query: 61 RCSEVDFDIAVFTNLTRDHMD-FHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
RC EVDFDIAVFTNLT DH+D FHGTEEEYR+AKAKLF+RMVDPERHRK+VNIDD NA+
Sbjct: 435 RCDEVDFDIAVFTNLTGDHLDSFHGTEEEYRDAKAKLFARMVDPERHRKIVNIDDSNASF 494
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
FIAQGNPDVPVVTFA+ENK ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN
Sbjct: 495 FIAQGNPDVPVVTFAIENKSADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 554
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD LS LLDS
Sbjct: 555 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDGLSILLDS 614
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
VREL P+RIITV+GCAGE DRGKRP+MTK+ATDKS+VT+LTSDNP NEDPLDILDDMLAG
Sbjct: 615 VRELKPKRIITVIGCAGEGDRGKRPMMTKVATDKSEVTMLTSDNPKNEDPLDILDDMLAG 674
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
VGW+MQ+YLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVV+AGKGHETYQ
Sbjct: 675 VGWSMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVIAGKGHETYQ 734
Query: 360 IEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPE 400
IEGDKKEFFDDREE REALQYVDELHQAGIDTSEFPWR E
Sbjct: 735 IEGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRKRE 775
>gi|359474007|ref|XP_002270348.2| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase-like [Vitis vinifera]
Length = 774
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/402 (91%), Positives = 384/402 (95%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MGLRTGMLS+V+YY+HG NKLE+P TTPDAV++Q LMAKMLHNGTEAVVMEASSHGLALG
Sbjct: 373 MGLRTGMLSTVAYYVHGKNKLEAPYTTPDAVLIQKLMAKMLHNGTEAVVMEASSHGLALG 432
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
RC+EVDFDIAVFTNLTRDHMDFH +EE+YRNAKAKLFSRMVDP+RHRK+VNIDDPNA F
Sbjct: 433 RCNEVDFDIAVFTNLTRDHMDFHESEEDYRNAKAKLFSRMVDPDRHRKIVNIDDPNAPFF 492
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
IAQGNPDVPVVTFAMENK ADVHPLKFELSLFETQVLV TP GILEISSGLLGRHNIYNI
Sbjct: 493 IAQGNPDVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKGILEISSGLLGRHNIYNI 552
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAAVAVGIAVGAPLEDIVRGIEE+DAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV
Sbjct: 553 LAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 612
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
REL RRIITV GCAGESDRGKRP+MTKIATDKSDV ILTSDNP NEDPLDILDDMLAGV
Sbjct: 613 RELGARRIITVFGCAGESDRGKRPIMTKIATDKSDVVILTSDNPKNEDPLDILDDMLAGV 672
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
GWTM +YLKYG NDYYPPLPNGHRLFLHDIRRVAVR AVAMGEEGD+VVVAGKGHETYQI
Sbjct: 673 GWTMHDYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDIVVVAGKGHETYQI 732
Query: 361 EGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
EGDKKEFFDDREE REALQYVDELHQAGIDTSEFPWRLPESH
Sbjct: 733 EGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 774
>gi|240254313|ref|NP_176555.4| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein
[Arabidopsis thaliana]
gi|332196011|gb|AEE34132.1| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein
[Arabidopsis thaliana]
Length = 772
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/404 (86%), Positives = 380/404 (94%), Gaps = 2/404 (0%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTT--PDAVMVQNLMAKMLHNGTEAVVMEASSHGLA 58
MG+RTGM S+VS YIHGDNKL++P T PDAV+VQ+LMAKMLHNGTE++VMEAS LA
Sbjct: 369 MGVRTGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHNGTESLVMEASPQELA 428
Query: 59 LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNAT 118
LG+C EVDFDIAVFTNLTR++ DF GT+EEYR+A+AKLFSRMVDPERHRKVVNIDDPNA
Sbjct: 429 LGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDPERHRKVVNIDDPNAA 488
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
F+ QGNP+VPVVTFAMEN KADVHPLKFELSLFETQVLVNTP GILEISSGLLGRHNIY
Sbjct: 489 FFVQQGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGILEISSGLLGRHNIY 548
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
NILAAVAVGIAVGAPLEDIVRG+EEVDAVPGRCELIDEEQAFGVIVD+A+TPD LSRLLD
Sbjct: 549 NILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFGVIVDHANTPDGLSRLLD 608
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
S+REL PRRIITV+GC GE++RGKRPLMTKIAT+KSDVT+LTSDNP NEDPLDILDDML+
Sbjct: 609 SIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTSDNPRNEDPLDILDDMLS 668
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+GWTMQEYLK+GE+DYYPPL NGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE Y
Sbjct: 669 GIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAY 728
Query: 359 QIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
Q+EG+KKEF+DDREE REALQYVDELHQAGIDTSEFPWRLPESH
Sbjct: 729 QLEGEKKEFYDDREECREALQYVDELHQAGIDTSEFPWRLPESH 772
>gi|238908349|emb|CAZ40334.1| putative UDP-N-acetylmuranoylanalyl-D-2-6-diaminoligase [Raphanus
sativus]
Length = 871
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/402 (86%), Positives = 377/402 (93%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG+RTGM SSVS Y+HGDNK++S T+PDAV+VQ++MAKMLHNGTEA+VMEAS LA G
Sbjct: 470 MGVRTGMFSSVSCYVHGDNKMDSTTTSPDAVLVQSMMAKMLHNGTEALVMEASPQELASG 529
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
+C EVDFDIAVFTNL R+ F GT+EEYR+A+AKLF+RMVDPERHRKVVNIDDPNA F
Sbjct: 530 KCDEVDFDIAVFTNLAREDSGFRGTDEEYRDAEAKLFARMVDPERHRKVVNIDDPNAAFF 589
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ QGNPDVPVVTFAMEN KADVHPLKFELSLFETQVL+NTP GILEISSGLLGRHNIYNI
Sbjct: 590 VQQGNPDVPVVTFAMENTKADVHPLKFELSLFETQVLLNTPQGILEISSGLLGRHNIYNI 649
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAAVAVGIAVGAPLEDIVRG+EEVDAVPGRCELIDEEQAFGVIVD+A+TPD LSRLLDSV
Sbjct: 650 LAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFGVIVDHANTPDGLSRLLDSV 709
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
REL PRRIITV+GCAGE++RGKRP+MTKIAT+KSDVT+LTSDNP NEDPLDILDDMLAG+
Sbjct: 710 RELKPRRIITVIGCAGETERGKRPVMTKIATEKSDVTMLTSDNPGNEDPLDILDDMLAGI 769
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
GWTMQEYLK+GE+DYYPPL NGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE YQ+
Sbjct: 770 GWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQL 829
Query: 361 EGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
EGDKKEF+DDREE REALQYVDELHQAGIDTSEFPWRLPESH
Sbjct: 830 EGDKKEFYDDREECREALQYVDELHQAGIDTSEFPWRLPESH 871
>gi|12324934|gb|AAG52413.1|AC011622_1 putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase; 54319-51679 [Arabidopsis
thaliana]
Length = 767
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/399 (85%), Positives = 375/399 (93%), Gaps = 2/399 (0%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTT--PDAVMVQNLMAKMLHNGTEAVVMEASSHGLA 58
MG+RTGM S+VS YIHGDNKL++P T PDAV+VQ+LMAKMLHNGTE++VMEAS LA
Sbjct: 369 MGVRTGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHNGTESLVMEASPQELA 428
Query: 59 LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNAT 118
LG+C EVDFDIAVFTNLTR++ DF GT+EEYR+A+AKLFSRMVDPERHRKVVNIDDPNA
Sbjct: 429 LGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDPERHRKVVNIDDPNAA 488
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
F+ QGNP+VPVVTFAMEN KADVHPLKFELSLFETQVLVNTP GILEISSGLLGRHNIY
Sbjct: 489 FFVQQGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGILEISSGLLGRHNIY 548
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
NILAAVAVGIAVGAPLEDIVRG+EEVDAVPGRCELIDEEQAFGVIVD+A+TPD LSRLLD
Sbjct: 549 NILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFGVIVDHANTPDGLSRLLD 608
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
S+REL PRRIITV+GC GE++RGKRPLMTKIAT+KSDVT+LTSDNP NEDPLDILDDML+
Sbjct: 609 SIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTSDNPRNEDPLDILDDMLS 668
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+GWTMQEYLK+GE+DYYPPL NGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE Y
Sbjct: 669 GIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAY 728
Query: 359 QIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWR 397
Q+EG+KKEF+DDREE REALQYVDELHQAGIDTSEFPWR
Sbjct: 729 QLEGEKKEFYDDREECREALQYVDELHQAGIDTSEFPWR 767
>gi|449452306|ref|XP_004143900.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase-like [Cucumis sativus]
gi|449495779|ref|XP_004159942.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase-like [Cucumis sativus]
Length = 779
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/402 (87%), Positives = 376/402 (93%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MGLRTG+L +V+YY+HGDNKLE P TTPDA++VQNLMAKMLHNGTEAVVME SS GLA G
Sbjct: 378 MGLRTGLLGTVAYYLHGDNKLELPSTTPDAILVQNLMAKMLHNGTEAVVMEVSSDGLARG 437
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
RC EVDFDIAVFTNLTRDH+DF G+EEEYR+AKAKLF RMVDP+RHRKV+NIDDPNA F
Sbjct: 438 RCDEVDFDIAVFTNLTRDHLDFQGSEEEYRDAKAKLFKRMVDPDRHRKVINIDDPNAPFF 497
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I QGNPDVPVVTFAMENK ADVHPLK+ELSLFETQVLV+TP GILEISSGLLG+HNIYNI
Sbjct: 498 IGQGNPDVPVVTFAMENKNADVHPLKYELSLFETQVLVHTPQGILEISSGLLGKHNIYNI 557
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAAVAVGIAVGAPLEDIVRG+EEVDAVPGR ELIDEEQAFGVIVD+AHTPD LSRLLDSV
Sbjct: 558 LAAVAVGIAVGAPLEDIVRGVEEVDAVPGRFELIDEEQAFGVIVDHAHTPDGLSRLLDSV 617
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
REL PRRIITV GC GE DRGKRP+MTKIATDKSDVTILTSDNP NEDPLDILDDMLAG+
Sbjct: 618 RELGPRRIITVFGCCGEHDRGKRPMMTKIATDKSDVTILTSDNPRNEDPLDILDDMLAGI 677
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
GWTMQ+YLK+GENDYYPPL NGHR+FLHDIRRVAVR AVAMGEEGD+VVVAGKGHETYQI
Sbjct: 678 GWTMQDYLKHGENDYYPPLSNGHRIFLHDIRRVAVRAAVAMGEEGDVVVVAGKGHETYQI 737
Query: 361 EGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
E DK +FFDDREE REALQYVDELHQAGIDTSEFPWRLPESH
Sbjct: 738 EDDKTDFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 779
>gi|297840127|ref|XP_002887945.1| PDE316 [Arabidopsis lyrata subsp. lyrata]
gi|297333786|gb|EFH64204.1| PDE316 [Arabidopsis lyrata subsp. lyrata]
Length = 767
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/399 (85%), Positives = 374/399 (93%), Gaps = 2/399 (0%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR--TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLA 58
MG+RTGM S+VS YIHGDNKL++P T PDAV+VQ+LMAKMLHNGTEA+VMEAS LA
Sbjct: 369 MGVRTGMFSTVSCYIHGDNKLDTPNATTNPDAVLVQSLMAKMLHNGTEALVMEASPQELA 428
Query: 59 LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNAT 118
LG+C EVDFDIAVFTNLTR++ DF GT+EEYR+A+AKLF+RMVDP RHRKVVNIDDPNAT
Sbjct: 429 LGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFARMVDPGRHRKVVNIDDPNAT 488
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
F+ QGNP+VPVVTFAMEN KADVHPL FELSLFETQVLVNTP GILEISSGLLGRHNIY
Sbjct: 489 FFVQQGNPNVPVVTFAMENTKADVHPLMFELSLFETQVLVNTPQGILEISSGLLGRHNIY 548
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
NILAAVAVGIAVGAPLEDIVRG+EEVDAVPGRCELIDEEQAFGVIVD+A+TPD LSRLLD
Sbjct: 549 NILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFGVIVDHANTPDGLSRLLD 608
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
S+REL PRRIITV+GC GE++RGKRPLMTKIAT+KSDVT+LTSDNP NEDPLDILDDMLA
Sbjct: 609 SIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTSDNPRNEDPLDILDDMLA 668
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+GWTMQEYLK+GE+DYYPPL NGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE Y
Sbjct: 669 GIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAY 728
Query: 359 QIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWR 397
Q+EG+KKEF+DDREE REALQYVDELHQAGIDTSEFPWR
Sbjct: 729 QLEGEKKEFYDDREECREALQYVDELHQAGIDTSEFPWR 767
>gi|356511484|ref|XP_003524456.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase-like [Glycine max]
Length = 748
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/402 (85%), Positives = 371/402 (92%), Gaps = 7/402 (1%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MGLRTGML+SV+ Y+HGDNK++ PD+V+VQNLMAKM+HNGTEAVVMEA HGL G
Sbjct: 354 MGLRTGMLNSVASYVHGDNKMDLGNMVPDSVLVQNLMAKMIHNGTEAVVMEAGGHGLGDG 413
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
+ EVDFDIAVFTNL+++ EE R+A+AKLFSRMVDPERHRKVVNIDDPNA+ F
Sbjct: 414 KYDEVDFDIAVFTNLSKE-------EEGDRDAQAKLFSRMVDPERHRKVVNIDDPNASFF 466
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
++QG+ +VPVVTFAMENK+ADVHPLKFELSLFETQVLVNTP GILEISSGLLG+HNIYNI
Sbjct: 467 VSQGSQEVPVVTFAMENKEADVHPLKFELSLFETQVLVNTPTGILEISSGLLGKHNIYNI 526
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYA TPDALSRLLDSV
Sbjct: 527 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYASTPDALSRLLDSV 586
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
REL PRR+ITV+GC GE DRGKRP+MTKIATDKS+VT+LTSDNP NEDPLDILDDMLAGV
Sbjct: 587 RELGPRRVITVIGCCGEGDRGKRPVMTKIATDKSEVTMLTSDNPKNEDPLDILDDMLAGV 646
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
GWTMQ+YLKYGENDYYPPLPNGHRLFLHDIRRVAVR AVAMGEEGDM+VVAGKGHETYQ+
Sbjct: 647 GWTMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDMIVVAGKGHETYQV 706
Query: 361 EGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
EGDKKEFFDDREE REALQYVDELHQAGIDTSEFPWRLPESH
Sbjct: 707 EGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 748
>gi|356528442|ref|XP_003532812.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase-like [Glycine max]
Length = 750
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/402 (85%), Positives = 369/402 (91%), Gaps = 7/402 (1%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MGLRTGML+SV+ Y+HGDNKLE PDAV+VQNLMAKM+HNGTE VVMEA +HGL G
Sbjct: 356 MGLRTGMLNSVASYVHGDNKLELGNAVPDAVLVQNLMAKMIHNGTEVVVMEAGAHGLGDG 415
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
+ EVDFDIAVFTNL+++ EE +A+AKLFSRMVDPERHRKVVNIDDPNA F
Sbjct: 416 KYDEVDFDIAVFTNLSQE-------EEGDIDAQAKLFSRMVDPERHRKVVNIDDPNAPFF 468
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
++QGN +VPVVTFAMENK+ADVHPLKFELSLFETQVLVNTP GILEISSGLLG+HNIYNI
Sbjct: 469 VSQGNREVPVVTFAMENKEADVHPLKFELSLFETQVLVNTPTGILEISSGLLGKHNIYNI 528
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYA TPDALSRLLDSV
Sbjct: 529 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYASTPDALSRLLDSV 588
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
REL PRR+ITV+GC GE DRGKRP+MTKIATDKS+VT+LTSDNP +EDPLDILDDMLAGV
Sbjct: 589 RELGPRRVITVIGCCGEGDRGKRPVMTKIATDKSEVTMLTSDNPKSEDPLDILDDMLAGV 648
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
GWTMQ+YLKYGENDYYPPLPNGHRLFLHDIRRVAVR AVAMGEEGD+VVVAGKGHETYQ+
Sbjct: 649 GWTMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDVVVVAGKGHETYQV 708
Query: 361 EGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
EGDKKEFFDDREE REALQYVDELHQAGIDTSEFPWRLPESH
Sbjct: 709 EGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 750
>gi|168031535|ref|XP_001768276.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680454|gb|EDQ66890.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 539
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 289/402 (71%), Positives = 345/402 (85%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MGL+ G+L +++YYI+G KLE+ TTPDAV +Q MA M+H+GT+A +ME SSH + LG
Sbjct: 138 MGLQAGLLGTINYYINGKKKLEATHTTPDAVHLQKHMASMVHHGTDACIMEVSSHAMHLG 197
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
RC EVDFD+AVFTNLT D DFH +E+EY+ A KLF++MV+PE+HRK+VNIDDP + F
Sbjct: 198 RCKEVDFDVAVFTNLTHDPEDFHKSEDEYKEASGKLFAKMVNPEKHRKIVNIDDPQSDYF 257
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ QGN DVPVVT+AM NK ADV+PL+ +LSLFE+++LV TP G LEISSGLLGRHN+YNI
Sbjct: 258 VTQGNQDVPVVTYAMGNKNADVYPLEVQLSLFESELLVRTPRGNLEISSGLLGRHNVYNI 317
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAAVAVGIAV APLEDIVRGIEEVDAVPGRCELIDEEQAF VIVD+A+TPD LSRLLD+V
Sbjct: 318 LAAVAVGIAVDAPLEDIVRGIEEVDAVPGRCELIDEEQAFAVIVDHANTPDGLSRLLDTV 377
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
RE PRRIITV+G G+ D+ KRPLM KIATDKSDV I TSDNP +EDPLD++DDMLAGV
Sbjct: 378 RECGPRRIITVLGSQGDRDKAKRPLMAKIATDKSDVCIFTSDNPRSEDPLDVIDDMLAGV 437
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
GW+M+EY K+GE+DYYPPLPNGHRLF ++IR +AVR VAMGEEGD VV+AGKGH TY+I
Sbjct: 438 GWSMEEYCKWGEDDYYPPLPNGHRLFCYEIRTIAVRAGVAMGEEGDAVVIAGKGHNTYEI 497
Query: 361 EGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
GD KE+FDDREE REALQ+VD+LH AG+DTSEFPWR+PES+
Sbjct: 498 IGDNKEYFDDREECREALQHVDDLHAAGVDTSEFPWRVPESN 539
>gi|297742512|emb|CBI34661.3| unnamed protein product [Vitis vinifera]
Length = 347
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 317/402 (78%), Positives = 331/402 (82%), Gaps = 55/402 (13%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MGLRTGMLS+V+YY+HG NKLE+P TTPD AV+++
Sbjct: 1 MGLRTGMLSTVAYYVHGKNKLEAPYTTPD-----------------AVLIQ--------- 34
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
+NAKAKLFSRMVDP+RHRK+VNIDDPNA F
Sbjct: 35 -----------------------------KNAKAKLFSRMVDPDRHRKIVNIDDPNAPFF 65
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
IAQGNPDVPVVTFAMENK ADVHPLKFELSLFETQVLV TP GILEISSGLLGRHNIYNI
Sbjct: 66 IAQGNPDVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKGILEISSGLLGRHNIYNI 125
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAAVAVGIAVGAPLEDIVRGIEE+DAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV
Sbjct: 126 LAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 185
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
REL RRIITV GCAGESDRGKRP+MTKIATDKSDV ILTSDNP NEDPLDILDDMLAGV
Sbjct: 186 RELGARRIITVFGCAGESDRGKRPIMTKIATDKSDVVILTSDNPKNEDPLDILDDMLAGV 245
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
GWTM +YLKYG NDYYPPLPNGHRLFLHDIRRVAVR AVAMGEEGD+VVVAGKGHETYQI
Sbjct: 246 GWTMHDYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDIVVVAGKGHETYQI 305
Query: 361 EGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
EGDKKEFFDDREE REALQYVDELHQAGIDTSEFPWRLPESH
Sbjct: 306 EGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 347
>gi|242035159|ref|XP_002464974.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor]
gi|241918828|gb|EER91972.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor]
Length = 761
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 304/404 (75%), Positives = 344/404 (85%), Gaps = 2/404 (0%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLES-PRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLA- 58
MG+RTG++ + Y G NKL++ P + D + Q LMA MLHNGTEAVV+E ++ G+
Sbjct: 358 MGVRTGLVGVLGAYAFGSNKLDARPDASSDPIAAQKLMATMLHNGTEAVVLETATDGIPP 417
Query: 59 LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNAT 118
G SE+D+DIAV TN+ + T E+Y ++ A LFSRMVDP+RHRKVVNIDDP A
Sbjct: 418 SGVGSEIDYDIAVLTNVRHTDGEDGMTYEQYMSSMASLFSRMVDPDRHRKVVNIDDPCAP 477
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
F AQG DVPVVT++ ENKKADVH LK++LSLFET+VLV TPHGILEISSGLLGR NIY
Sbjct: 478 FFAAQGGHDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHGILEISSGLLGRENIY 537
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
NILA VAVGIAVGAPLEDIVRGIEEVDA+PGRCELIDEEQAFGVIVD+A TP+ALSRLLD
Sbjct: 538 NILATVAVGIAVGAPLEDIVRGIEEVDAIPGRCELIDEEQAFGVIVDHARTPEALSRLLD 597
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
VREL PRRI+TVVGC GE +RGKRP+MTKIA DKSDV +LTSDNP NEDPLDILDDMLA
Sbjct: 598 GVRELGPRRIVTVVGCCGEKERGKRPVMTKIAADKSDVVMLTSDNPANEDPLDILDDMLA 657
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GVGWTM+EYLKYG NDYYPPLPNGHRLFLHDIRRVAVR AVAMGE+GD+VV+ GKG++TY
Sbjct: 658 GVGWTMEEYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEQGDVVVITGKGNDTY 717
Query: 359 QIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
QIEGDK EFFDDREE REALQYVD+LH+AGIDTSEFPWRLPESH
Sbjct: 718 QIEGDKSEFFDDREECREALQYVDQLHRAGIDTSEFPWRLPESH 761
>gi|302781769|ref|XP_002972658.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
gi|300159259|gb|EFJ25879.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
Length = 532
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 284/399 (71%), Positives = 332/399 (83%), Gaps = 1/399 (0%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MGL+TG++ ++SY IHG +K ++P TTPDAV +Q LMA M+HN TE VME SSH LA
Sbjct: 131 MGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVCVMEVSSHALAQD 190
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
RC E+DFD+AVFTNLTRDHMD+H E+ Y+ AK KLF+ MVDP RHRKVVNIDDPNA F
Sbjct: 191 RCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARHRKVVNIDDPNAGYF 250
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
++ GNP VPVVTF ME K ADVHPL +L+LFET VLV TP G +EISSGLLGRHN+YNI
Sbjct: 251 VSLGNPKVPVVTFGME-KSADVHPLDIQLTLFETNVLVKTPRGNIEISSGLLGRHNVYNI 309
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAAV+VGIAV APLEDIVRGIEEVD+VPGR EL+DEEQ F VIVDYAHTPDALSRLLD+V
Sbjct: 310 LAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELVDEEQPFAVIVDYAHTPDALSRLLDTV 369
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
RE PRRIITVVGC G+ DRGKRP+M KIA KS+V I TSDNP +EDPL+ILDDMLAGV
Sbjct: 370 RECGPRRIITVVGCGGDRDRGKRPVMAKIAAAKSEVCIFTSDNPRSEDPLEILDDMLAGV 429
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
GW+M EYLK GE YYPP+ NG+R+F++D+R++AVR AVAMGEEGD VV+AGKGHE YQI
Sbjct: 430 GWSMDEYLKCGERSYYPPIWNGNRVFVYDLRKIAVRAAVAMGEEGDAVVIAGKGHEKYQI 489
Query: 361 EGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLP 399
G ++++ DDREE REAL +VD LH +GIDTSE PW+ P
Sbjct: 490 IGKERKYHDDREECREALLHVDMLHASGIDTSEIPWKFP 528
>gi|226507610|ref|NP_001141424.1| uncharacterized protein LOC100273534 [Zea mays]
gi|194704536|gb|ACF86352.1| unknown [Zea mays]
Length = 540
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 304/404 (75%), Positives = 342/404 (84%), Gaps = 2/404 (0%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLES-PRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLA- 58
MG+RTG++ + Y NKL++ P + D + Q LMA MLHNGTEAVV+E + G+
Sbjct: 137 MGVRTGLVGVLGTYAFSSNKLDARPDASSDPIAAQKLMATMLHNGTEAVVLEKGTDGMPP 196
Query: 59 LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNAT 118
G SE+D+DIAV TN+ + T EEY + A LFSRMVDPERHRKVVNIDDP+A
Sbjct: 197 SGVDSEIDYDIAVLTNVRHTDEENGMTYEEYMSRMASLFSRMVDPERHRKVVNIDDPSAP 256
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
F AQG DVPVVT++ ENKKADVH LK++LSLFET+VLV TPHGILEISSGLLGR NIY
Sbjct: 257 FFAAQGGHDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHGILEISSGLLGRDNIY 316
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
+ILA VAVGIAVGAPLEDIVRGIEEVDA+PGRCELIDEEQAFGVIVD+A TP+ALSRLLD
Sbjct: 317 SILATVAVGIAVGAPLEDIVRGIEEVDAIPGRCELIDEEQAFGVIVDHARTPEALSRLLD 376
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
VREL PRRI+TVVGC GE +RGKRP+MTKIA DKSDV +LTSDNP NEDPLDILDDMLA
Sbjct: 377 GVRELGPRRIVTVVGCCGEKERGKRPVMTKIAADKSDVVMLTSDNPANEDPLDILDDMLA 436
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GVGWTM+EYLKYG NDYYPPLPNGHRLFLHDIRRVAVR AVAMGE+GD+VV+ GKG++TY
Sbjct: 437 GVGWTMEEYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEQGDVVVITGKGNDTY 496
Query: 359 QIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
QIEGDK EFFDDREE REALQYVD+LH+AGIDTSEFPWRLPESH
Sbjct: 497 QIEGDKNEFFDDREECREALQYVDQLHRAGIDTSEFPWRLPESH 540
>gi|413955276|gb|AFW87925.1| hypothetical protein ZEAMMB73_630035 [Zea mays]
Length = 760
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 304/404 (75%), Positives = 342/404 (84%), Gaps = 2/404 (0%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLES-PRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLA- 58
MG+RTG++ + Y NKL++ P + D + Q LMA MLHNGTEAVV+E + G+
Sbjct: 357 MGVRTGLVGVLGTYAFSSNKLDARPDASSDPIAAQKLMATMLHNGTEAVVLEKGTDGMPP 416
Query: 59 LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNAT 118
G SE+D+DIAV TN+ + T EEY + A LFSRMVDPERHRKVVNIDDP+A
Sbjct: 417 SGVDSEIDYDIAVLTNVRHTDEENGMTYEEYMSRMASLFSRMVDPERHRKVVNIDDPSAP 476
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
F AQG DVPVVT++ ENKKADVH LK++LSLFET+VLV TPHGILEISSGLLGR NIY
Sbjct: 477 FFAAQGGHDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHGILEISSGLLGRDNIY 536
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
+ILA VAVGIAVGAPLEDIVRGIEEVDA+PGRCELIDEEQAFGVIVD+A TP+ALSRLLD
Sbjct: 537 SILATVAVGIAVGAPLEDIVRGIEEVDAIPGRCELIDEEQAFGVIVDHARTPEALSRLLD 596
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
VREL PRRI+TVVGC GE +RGKRP+MTKIA DKSDV +LTSDNP NEDPLDILDDMLA
Sbjct: 597 GVRELGPRRIVTVVGCCGEKERGKRPVMTKIAADKSDVVMLTSDNPANEDPLDILDDMLA 656
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GVGWTM+EYLKYG NDYYPPLPNGHRLFLHDIRRVAVR AVAMGE+GD+VV+ GKG++TY
Sbjct: 657 GVGWTMEEYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEQGDVVVITGKGNDTY 716
Query: 359 QIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
QIEGDK EFFDDREE REALQYVD+LH+AGIDTSEFPWRLPESH
Sbjct: 717 QIEGDKNEFFDDREECREALQYVDQLHRAGIDTSEFPWRLPESH 760
>gi|115483276|ref|NP_001065308.1| Os10g0548900 [Oryza sativa Japonica Group]
gi|13876527|gb|AAK43503.1|AC020666_13 putative UDP-N-acetylmuramoylananyl-D-glutamate-2,6
-diaminopimelate ligase [Oryza sativa Japonica Group]
gi|31433391|gb|AAP54910.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein,
expressed [Oryza sativa Japonica Group]
gi|113639840|dbj|BAF27145.1| Os10g0548900 [Oryza sativa Japonica Group]
Length = 757
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 297/404 (73%), Positives = 348/404 (86%), Gaps = 2/404 (0%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLES-PRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGL-A 58
MG+RTGM+ + Y G+NKL++ P + D + VQ LMA ML+NG EA ++EA++ G+ +
Sbjct: 354 MGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNGAEAALLEATTDGMPS 413
Query: 59 LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNAT 118
G SE+D+DIAV TN+ + T EEY N+ A LFSRMVDPERHRKVVNIDDP+A
Sbjct: 414 SGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDPERHRKVVNIDDPSAP 473
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
F AQG DVPVVT++ ENKKADVH LK++LSLFET+VLV TPHGILEISSGLLGR NIY
Sbjct: 474 FFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHGILEISSGLLGRDNIY 533
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
NILA+VAVG+AVGAPLEDIV+GIEEVDA+PGRCELIDEEQAFGVIVD+A TP++LSRLLD
Sbjct: 534 NILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELIDEEQAFGVIVDHARTPESLSRLLD 593
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
V+EL PRRI+TV+GC GE +RGKRP+MTK+A +KSDV +LTSDNP NEDPLDILDDMLA
Sbjct: 594 GVKELGPRRIVTVIGCCGERERGKRPVMTKVAAEKSDVVMLTSDNPANEDPLDILDDMLA 653
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GVGWTM+EYLK+G NDYYPPLPNGHR+FLHDIRRVAVR AVAMGE+GD+VV+ GKG++TY
Sbjct: 654 GVGWTMEEYLKHGTNDYYPPLPNGHRIFLHDIRRVAVRAAVAMGEQGDVVVITGKGNDTY 713
Query: 359 QIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
QIE DKKEFFDDREE REALQYVD+LH+AGIDTSEFPWRLPESH
Sbjct: 714 QIEVDKKEFFDDREECREALQYVDQLHRAGIDTSEFPWRLPESH 757
>gi|357147315|ref|XP_003574298.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase-like [Brachypodium distachyon]
Length = 755
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 298/404 (73%), Positives = 345/404 (85%), Gaps = 2/404 (0%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLES-PRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLA- 58
MG+RTGM+ + Y G NKL++ P + D++ VQ LMA MLHNG EA V+E ++ G+
Sbjct: 352 MGVRTGMVGVLGAYAFGSNKLDAQPDASGDSIAVQKLMATMLHNGAEAAVLETTTDGMPP 411
Query: 59 LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNAT 118
G SE+D+DIAV TN+ + T EEY ++ A LFSRMVDPERHRKVVNIDDP+A
Sbjct: 412 SGVDSEIDYDIAVLTNVRHADWEAGMTYEEYMSSMASLFSRMVDPERHRKVVNIDDPSAP 471
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
F AQG DVPVVT++ ENKKADVH LK++LSLFET+VLV TP GILEISSGLLGR NIY
Sbjct: 472 FFAAQGGHDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPDGILEISSGLLGRDNIY 531
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
NILA VAVG+AVGAPLEDIV+GIEEVDA+PGRCELIDEEQAFGVI+D+A TP+ALSRLLD
Sbjct: 532 NILATVAVGVAVGAPLEDIVKGIEEVDAIPGRCELIDEEQAFGVIIDHARTPEALSRLLD 591
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
V+EL PRRI+TVVGC GE +RGKRP+MTKIA +KSDV +LTSDNP +EDPLDILDDML+
Sbjct: 592 CVKELGPRRIVTVVGCCGEKERGKRPVMTKIAAEKSDVVMLTSDNPASEDPLDILDDMLS 651
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GVGWTM+EYLKYG NDYYPPLPNGHRLFLHDIRRVAVR AVAMGE+GD+VVV GKG++TY
Sbjct: 652 GVGWTMEEYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEQGDVVVVTGKGNDTY 711
Query: 359 QIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
Q+EGDKKEFFDDREE REALQYVD+LH++GIDTSEFPWRLPESH
Sbjct: 712 QLEGDKKEFFDDREECREALQYVDQLHRSGIDTSEFPWRLPESH 755
>gi|125575608|gb|EAZ16892.1| hypothetical protein OsJ_32369 [Oryza sativa Japonica Group]
Length = 770
Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust.
Identities = 297/417 (71%), Positives = 348/417 (83%), Gaps = 15/417 (3%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLES-PRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGL-A 58
MG+RTGM+ + Y G+NKL++ P + D + VQ LMA ML+NG EA ++EA++ G+ +
Sbjct: 354 MGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNGAEAALLEATTDGMPS 413
Query: 59 LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNAT 118
G SE+D+DIAV TN+ + T EEY N+ A LFSRMVDPERHRKVVNIDDP+A
Sbjct: 414 SGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDPERHRKVVNIDDPSAP 473
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
F AQG DVPVVT++ ENKKADVH LK++LSLFET+VLV TPHGILEISSGLLGR NIY
Sbjct: 474 FFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHGILEISSGLLGRDNIY 533
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
NILA+VAVG+AVGAPLEDIV+GIEEVDA+PGRCELIDEEQAFGVIVD+A TP++LSRLLD
Sbjct: 534 NILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELIDEEQAFGVIVDHARTPESLSRLLD 593
Query: 239 SVRELAPRRIIT-------------VVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPM 285
V+EL PRRI+T V+GC GE +RGKRP+MTK+A +KSDV +LTSDNP
Sbjct: 594 GVKELGPRRIVTVLRIEVPAMMFDVVIGCCGERERGKRPVMTKVAAEKSDVVMLTSDNPA 653
Query: 286 NEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEG 345
NEDPLDILDDMLAGVGWTM+EYLK+G NDYYPPLPNGHR+FLHDIRRVAVR AVAMGE+G
Sbjct: 654 NEDPLDILDDMLAGVGWTMEEYLKHGTNDYYPPLPNGHRIFLHDIRRVAVRAAVAMGEQG 713
Query: 346 DMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
D+VV+ GKG++TYQIE DKKEFFDDREE REALQYVD+LH+AGIDTSEFPWRLPESH
Sbjct: 714 DVVVITGKGNDTYQIEVDKKEFFDDREECREALQYVDQLHRAGIDTSEFPWRLPESH 770
>gi|168040796|ref|XP_001772879.1| MurE synthetase [Physcomitrella patens subsp. patens]
gi|76880172|dbj|BAE45858.1| MurE synthetase [Physcomitrella patens subsp. patens]
gi|76880184|dbj|BAE45863.1| MurE synthetase [Physcomitrella patens subsp. patens]
gi|162675790|gb|EDQ62281.1| MurE synthetase [Physcomitrella patens subsp. patens]
Length = 606
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 267/379 (70%), Positives = 314/379 (82%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MGL+ G+L ++ YYI G NKLE+ TTP+A+ +QNLMA M+ NGTE +ME SSHGL LG
Sbjct: 225 MGLQVGLLGTIQYYIGGKNKLEADHTTPEALNLQNLMASMVQNGTEVCIMEVSSHGLVLG 284
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
RC +++FD+AVFTNLTRDHMDFH TEEEYR AK LF++MVDPER RKVVNIDDPN + F
Sbjct: 285 RCEDIEFDVAVFTNLTRDHMDFHKTEEEYRRAKGLLFAKMVDPERQRKVVNIDDPNVSYF 344
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
++QGN DVPVVTF M +K ADV+PL +LSL E++VLV TP G +EISS LLGRHN+YNI
Sbjct: 345 VSQGNQDVPVVTFGMGDKSADVYPLAVKLSLVESEVLVRTPQGDVEISSRLLGRHNVYNI 404
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L AVAVGIAVGAPLEDIVRGIE VDAVPGRCELIDE Q F V+VDYAHTPDA++RLLD+V
Sbjct: 405 LTAVAVGIAVGAPLEDIVRGIEAVDAVPGRCELIDEGQTFAVLVDYAHTPDAVARLLDTV 464
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
RE P+RIITV+GC G+ D+GKRP+M KIA DKSDV I+TSDNP E PLDI+DDMLAGV
Sbjct: 465 RECGPKRIITVLGCGGDRDKGKRPIMAKIAADKSDVCIITSDNPRTEKPLDIIDDMLAGV 524
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
GW+M++Y K+ E+ YP LPNGHRLF +IR A+R AVAM EEGD VV+AGKGHETYQI
Sbjct: 525 GWSMEQYCKWEEDSSYPLLPNGHRLFCQEIRSKAIRAAVAMAEEGDAVVIAGKGHETYQI 584
Query: 361 EGDKKEFFDDREESREALQ 379
G+ K FDDREE REAL+
Sbjct: 585 IGEIKGHFDDREECREALR 603
>gi|302812929|ref|XP_002988151.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
gi|300144257|gb|EFJ10943.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
Length = 507
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 265/397 (66%), Positives = 312/397 (78%), Gaps = 20/397 (5%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MGL+TG++ ++SY IHG +K ++P TTPDAV +Q LMA M+HN TE VME SSH LA
Sbjct: 131 MGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVCVMEVSSHALAQD 190
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
RC E+DFD+AVFTNLTRDHMD+H E+ Y+ AK KLF+ MVDP RHRKVVNIDDPNA F
Sbjct: 191 RCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARHRKVVNIDDPNAGYF 250
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
++ GNP VPVVTF ME K ADVHPL +L+LFET VLV TP G +EISSGLLGRHN+YNI
Sbjct: 251 VSLGNPKVPVVTFGME-KSADVHPLDIQLTLFETNVLVKTPRGNIEISSGLLGRHNVYNI 309
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAAV+VGIAV APLEDIVRGIEEVD+VPGR EL+DEEQ F VIVDYAHTPDALSRLLD+V
Sbjct: 310 LAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELVDEEQPFAVIVDYAHTPDALSRLLDTV 369
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
RE PRRIITVVGC G+ DRGKRP+M KIA KS+V I TSDNP +EDP
Sbjct: 370 RECGPRRIITVVGCGGDRDRGKRPVMAKIAAAKSEVCIFTSDNPRSEDP----------- 418
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ E YYPP+ NG+R+F++D+R++AVR AVAMGEEGD VV+AGKGHE YQI
Sbjct: 419 --------RKFERSYYPPIWNGNRVFVYDLRKIAVRAAVAMGEEGDAVVIAGKGHEKYQI 470
Query: 361 EGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWR 397
G ++++ DDREE REAL +VD LH +GIDTSE PW+
Sbjct: 471 IGKERKYHDDREECREALLHVDMLHASGIDTSEIPWK 507
>gi|218184973|gb|EEC67400.1| hypothetical protein OsI_34565 [Oryza sativa Indica Group]
Length = 889
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/305 (65%), Positives = 240/305 (78%), Gaps = 15/305 (4%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLES-PRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGL-A 58
MG+RTGM+ + Y G+NKL++ P + D + VQ LMA ML+NG EA ++E ++ G+ +
Sbjct: 354 MGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNGAEAALLEVTTDGMPS 413
Query: 59 LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNAT 118
G SE+D+DIAV TN+ + T EEY N+ A LFSRMVDPERHRKVVNIDDP+A
Sbjct: 414 SGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDPERHRKVVNIDDPSAP 473
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
F AQG DVPVVT++ ENKKADVH LK++LSLFET+VLV TPHGILEISSGLLGR NIY
Sbjct: 474 FFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHGILEISSGLLGRDNIY 533
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
NILA+VAVG+AVGAPLEDIV+GIEEVDA+PGRCELIDEEQAFGVIVD+A TP++LSRLLD
Sbjct: 534 NILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELIDEEQAFGVIVDHARTPESLSRLLD 593
Query: 239 SVRELAPRRIIT-------------VVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPM 285
V+EL PRRI+T V+GC GE +RGKRP+MTK+A +KSDV +LTSDNP
Sbjct: 594 GVKELGPRRIVTVLRIEVPAMMFDVVIGCCGERERGKRPVMTKVAAEKSDVVMLTSDNPA 653
Query: 286 NEDPL 290
NEDPL
Sbjct: 654 NEDPL 658
>gi|303280806|ref|XP_003059695.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458350|gb|EEH55647.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 614
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 191/404 (47%), Positives = 245/404 (60%), Gaps = 26/404 (6%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
+ G++ +V Y I GD K E P TTPDA+ Q ++A M+ G A ME SSH L LGR
Sbjct: 223 VSCGVVGTVGYEI-GDGKYEVPNTTPDALQTQQILAGMIDAGAGACAMEVSSHALELGRV 281
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI- 121
E DFD+AVFTNL+RDH+DFHG+ E+YR AKAKLF ++ DP R R NA FI
Sbjct: 282 DECDFDVAVFTNLSRDHLDFHGSMEKYREAKAKLFHKLTDPARQRAKDRDTFDNAAYFIE 341
Query: 122 -AQGNPDVPVVTFAMENKK---ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
A G VP++T+A + K ADV +L+LFET + + TP G E G++G+ N+
Sbjct: 342 AAGGGDRVPIITYATQPSKEGQADVFVSDVKLALFETTLTIQTPVGEFEAVCGVVGKINV 401
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
NI AAVAVG+A+ PL+ I G+EE+ VPGR ELIDE Q F VIVDYAHTPDAL R +
Sbjct: 402 TNIAAAVAVGVALEIPLDVIAAGVEEMTPVPGRMELIDEGQPFSVIVDYAHTPDALKRAI 461
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
S+R R +ITV GC G+ D KR M +IA SD+ +T+DNP EDP ILDD
Sbjct: 462 TSLRAANVRNVITVFGCGGDRDASKRKEMGEIADTYSDIVFVTNDNPRTEDPYKILDD-- 519
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
TMQ L N R ++ R A+R A+AM E D V++ GKGHE
Sbjct: 520 -----TMQ-------------LQNMCRRYVIVDRWYAIRGAIAMAGEDDAVLICGKGHED 561
Query: 358 YQIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPES 401
Y + G K +FDDR E+R+AL+ V + +AG+DT PW P S
Sbjct: 562 YIVVGGNKHWFDDRVEARDALRKVVAVQEAGVDTQNLPWGRPGS 605
>gi|384249344|gb|EIE22826.1| Mur ligase [Coccomyxa subellipsoidea C-169]
Length = 544
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 181/410 (44%), Positives = 243/410 (59%), Gaps = 40/410 (9%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
K E+P PD + VQ L+A M G + V+E + GL GR VD +IAVFTNL D
Sbjct: 127 GKYEAPNEAPDGLEVQKLLAGMADRGADVAVVECNPEGLDQGRMDHVDLNIAVFTNLATD 186
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNA---TSFIAQGNPDVPVVTFAM 135
+ G EE A+ +F R+ DP R ++N+DDP A +F AQ VPVVT+AM
Sbjct: 187 AAE-DGDFEELLEAQGAIFRRLTDPTTQRAIINLDDPYADDIRAFAAQ----VPVVTYAM 241
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGA--- 192
NK ADV P K S++ET++ V TP G L I + L+GRHN+YNILAAVAVG+AV
Sbjct: 242 YNKSADVWPEKMRFSMWETEIKVQTPVGPLLIITPLIGRHNVYNILAAVAVGLAVTVDGD 301
Query: 193 --PLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIIT 250
PL+ IV+GIE + VPGRCE+IDE+Q FG +VD A TP ALSRL+D +RE P+R+I
Sbjct: 302 PIPLKTIVQGIEATEIVPGRCEVIDEDQPFGCVVDAADTPAALSRLMDGLRECHPKRLIL 361
Query: 251 VVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKY 310
V+GC GE D+GKRP M +IA K+D+ I+T+D+P E P +I+ DM+AG LK
Sbjct: 362 VLGCPGEQDQGKRPFMGEIAHYKADLVIMTNDSPRGEAPNEIIADMVAGY---PDSILKR 418
Query: 311 GENDYYPPL---------PNGHRLFLHDI----------RRVAVRCAVAMGEEGDMVVVA 351
+ Y P N F H+ R A+R A+ + D VV+A
Sbjct: 419 NASVPYQPGFLQDPGRVDYNALEFFWHNCYEYRRYVVEDRWTAIRWAIGSAQTDDCVVIA 478
Query: 352 GKGHE---TYQIEGDK-KEFFDDREESREALQYVDELHQ-AGIDTSEFPW 396
G+GH+ + I+G+ + +FDDR E+R AL V +L Q +G D +E PW
Sbjct: 479 GRGHKDFVEWGIDGENLRGWFDDRVEARNALAKVAKLWQISGFDHAELPW 528
>gi|384134944|ref|YP_005517658.1| UDP-N-acetylmuramyl tripeptide synthetase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289029|gb|AEJ43139.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 516
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 171/384 (44%), Positives = 218/384 (56%), Gaps = 27/384 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ +V + G P TTP+AV V + + G VME SSH L R
Sbjct: 148 GRRAGLIGTVGAKL-GQASWPLPNTTPEAVEVHRWLRRFADEGATHAVMEVSSHALVERR 206
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV-----DPERH-RKVVNIDDP 115
+ V F A FTNLT+DH+DFHGT E Y AKA LFSR+ DP R V+N DDP
Sbjct: 207 AAGVSFACAAFTNLTQDHLDFHGTMERYAAAKALLFSRLGNGAGDDPARSVYAVLNADDP 266
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
S++ P++T+ ME + ADV LS + V++P G EI + L+GR
Sbjct: 267 --WSWVMAEASAAPILTYGME-RSADVKARDVRLSASGARFWVDSPAGAFEIETPLIGRF 323
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAAVA+ + G +I GI +VPGR E IDE Q F V VDYAHTPD L
Sbjct: 324 NVYNTLAAVAIALVEGLTPTEIRDGIRSYPSVPGRMERIDEGQPFSVFVDYAHTPDGLEN 383
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +VRE AP R++ VVGC G+ DR KRP M ++A +D I TSDNP +EDP IL D
Sbjct: 384 VLAAVREFAPARVLVVVGCGGDRDRTKRPKMAEVAVRLADRAIFTSDNPRSEDPFAILAD 443
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
M AGV QE+ E D RR A+ A++ E GD+VV+AGKGH
Sbjct: 444 MRAGVH-AAQEHKVREEVD----------------RRRAIEMAISEAEPGDVVVIAGKGH 486
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
E YQI G +K FDDREE+R A++
Sbjct: 487 EDYQIIGAEKRHFDDREEARRAIR 510
>gi|258511257|ref|YP_003184691.1| UDP-N-acetylmuramyl tripeptide synthetase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257477983|gb|ACV58302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 498
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 169/384 (44%), Positives = 222/384 (57%), Gaps = 27/384 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V + G P TTP+AV V + + + G VME SSH L R
Sbjct: 130 GRKAGLIGTVGAKL-GQASWPLPNTTPEAVEVHRWLRRFVDAGATHAVMEVSSHALVERR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV-----DPERH-RKVVNIDDP 115
+ V F A FTNLT+DH+DFHGT E Y AKA LFSR+ DP R V+N+DDP
Sbjct: 189 AAGVSFACAAFTNLTQDHLDFHGTMERYAGAKALLFSRLGNGTGDDPARSVYAVINVDDP 248
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+S +A+ + P++T+ +E + DV LS + V++P G EI + L+GR
Sbjct: 249 -WSSVMAEASA-APILTYGIE-RAGDVRARDVRLSASGARFFVDSPAGAFEIETPLIGRF 305
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAAVA+ + G +I GI +VPGR E IDE Q F V VDYAHTPD L
Sbjct: 306 NVYNTLAAVAIALVEGLTPTEIQEGIRSYPSVPGRMERIDEGQPFSVFVDYAHTPDGLEN 365
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L SVRE AP R++ VVGC G+ DR KRP M ++A +D I TSDNP +EDP+ IL D
Sbjct: 366 VLASVREFAPARVLVVVGCGGDRDRTKRPKMAEVAVRLADRAIFTSDNPRSEDPVAILAD 425
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
M GV E Y H++ RR A+ A+A E GD+VV+AGKGH
Sbjct: 426 MRGGV-----------EPAY------AHKVREEVDRRRAIEMAIAEAEPGDVVVIAGKGH 468
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
E YQI G +K FDDREE+R A++
Sbjct: 469 EDYQIIGAEKRHFDDREEARRAIR 492
>gi|218289895|ref|ZP_03494085.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
acidocaldarius LAA1]
gi|218240035|gb|EED07221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
acidocaldarius LAA1]
Length = 498
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 169/384 (44%), Positives = 222/384 (57%), Gaps = 27/384 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V + G P TTP+AV V L+ + + G VME SSH L R
Sbjct: 130 GRKAGLIGTVGAKL-GSTSWSLPNTTPEAVEVHRLLRRFVDAGATHAVMEVSSHALVERR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV-----DPERH-RKVVNIDDP 115
+ V F A FTNLT+DH+DFHGT E Y AKA LFSR+ DP R V+N DDP
Sbjct: 189 AAGVSFACAAFTNLTQDHLDFHGTMERYAAAKALLFSRLGNGTGDDPARSVYAVINADDP 248
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+ +A+ + P++T+ +E + ADV LS + V++P G EI + L+GR
Sbjct: 249 -WSPVMAEASA-APILTYGIE-RAADVRARDVRLSASGARFWVDSPAGAFEIETPLIGRF 305
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAAVA+ + G +I GI +VPGR E IDE Q F V VDYAHTPD L
Sbjct: 306 NVYNTLAAVAIALVEGLAASEIQEGIRSYPSVPGRMERIDEGQPFSVFVDYAHTPDGLEN 365
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L SVRE AP R++ VVGC G+ DR KRP M ++A +D I TSDNP +EDP+ IL +
Sbjct: 366 VLASVREFAPARVLVVVGCGGDRDRTKRPKMAEVAVRLADRAIFTSDNPRSEDPVAILAE 425
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
M GV E Y H++ RR A+ A+A E GD+VV+AGKGH
Sbjct: 426 MRGGV-----------EPAY------AHKVREEVDRRRAIEMAIAEAEPGDVVVIAGKGH 468
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
E YQI G +K FDDREE+R A++
Sbjct: 469 EDYQIIGAEKRHFDDREEARRAIR 492
>gi|239826518|ref|YP_002949142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacillus sp. WCH70]
gi|239806811|gb|ACS23876.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. WCH70]
Length = 490
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/386 (41%), Positives = 227/386 (58%), Gaps = 40/386 (10%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ +V I GD+ + TTP+++++Q +M+ G + VME SSH L +GR
Sbjct: 129 KTGLIGTVHIKI-GDHTYPTKNTTPESLLLQRTFKQMVDEGVDVAVMEVSSHALHMGRVH 187
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATS 119
D+D+AVFTNLT+DH+D+HGT EEYRNAK LF+++ + H + V+N DDP +
Sbjct: 188 GCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDHERPKFAVLNNDDPASKY 247
Query: 120 FIAQGNPDVPVVTFAMEN------KKADVHPLKFELSLFETQVLVNTPHGILEISSGLLG 173
+ + V+T+ +E KK D+ P L TP+G + + + L+G
Sbjct: 248 Y--KHMTAASVITYGIETDSDIMAKKIDIVPSGMSFDLI-------TPNGTVRVKTRLIG 298
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
N+YN+LAAV+ + G PL IV IEE+ V GR E +DE Q F VIVDYAHTPD+L
Sbjct: 299 LFNVYNLLAAVSACLVSGIPLPVIVEAIEEISGVAGRFETVDEGQNFTVIVDYAHTPDSL 358
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L ++R+ A +++ VVGC G+ DR KRPLM K A +DV I TSDNP +EDP IL
Sbjct: 359 ENVLKTIRQFAQKKVYVVVGCGGDRDRTKRPLMAKTAVKYADVAIFTSDNPRSEDPEQIL 418
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
DM AGV G R R+ A+ A+ +EGD++++AGK
Sbjct: 419 RDMEAGV--------------------PGERYVTIVDRKEAIYYAIEQAQEGDIILIAGK 458
Query: 354 GHETYQIEGDKKEFFDDREESREALQ 379
GHETYQI GD+ FDDR +REA++
Sbjct: 459 GHETYQIIGDRVIDFDDRLVAREAIK 484
>gi|387927132|ref|ZP_10129811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus methanolicus PB1]
gi|387589276|gb|EIJ81596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus methanolicus PB1]
Length = 486
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 153/382 (40%), Positives = 234/382 (61%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ I G+ E+ TTP+++ +Q +M+ +G E VME SSH L GR
Sbjct: 127 GQKTGLIGTIYTKI-GNQTFETKNTTPESLRLQKTFKQMIDSGVETAVMEVSSHALVYGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+++AVFTNLT+DH+D+H T +EYR AK+ LFS++ + H K V+N DDP +
Sbjct: 186 VHGCDYNVAVFTNLTQDHLDYHKTMDEYRRAKSLLFSQLGNTFSHDKPKFAVLNADDPAS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+I + VVT+ ++ + AD+ +++ T + TPHG+ +IS L+G+ ++
Sbjct: 246 REYIQ--STAAHVVTYGID-QPADIKAANLKIAANGTVFDLITPHGVEKISMKLIGKFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LA++ + G L+ +++ IEEV+ VPGR EL++E Q F VIVDYAHTPD+L +L
Sbjct: 303 YNVLASIGACLVSGISLKQMIKSIEEVEGVPGRFELVNEGQDFAVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++++ A R I VVGC G+ DR KRPLM KIA + I TSDNP NEDPL I+ DM
Sbjct: 363 KTIKQFAERNIYVVVGCGGDRDRTKRPLMAKIACQYATHPIFTSDNPRNEDPLQIIRDME 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV + Y P+ + R+ A+ A+ ++GD++++AGKGHET
Sbjct: 423 EGV-----------KGKQYKPIVD---------RKEAIYYAINNAQKGDVILIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ G + FDDR ++EA++
Sbjct: 463 YQQIGSEVFDFDDRVVAKEAIE 484
>gi|414154498|ref|ZP_11410816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411453895|emb|CCO08720.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 490
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 164/379 (43%), Positives = 228/379 (60%), Gaps = 28/379 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL+ G++ ++ I G+ L TTP+++ +Q L+A+M+ + V ME SSH LAL R
Sbjct: 129 GLKPGVIGTIHNLI-GEQALPVTNTTPESLDLQKLLARMVEENVKGVAMEVSSHALALNR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF- 120
+ V +D+AVFTN+T+DH+DFHGT EEY AKAKLF+ + V+N DDP A
Sbjct: 188 VAGVAYDMAVFTNITQDHLDFHGTMEEYLAAKAKLFTMDI----KYAVINADDPAAAYLT 243
Query: 121 -IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+++G V T+A+E ++ADV +++ V P G ++ L GR N+YN
Sbjct: 244 KVSRGK----VYTYAIE-QQADVMATDIQVTAKGVSFTVRGPWGEHKLQLKLTGRFNVYN 298
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
LAA G+A+G P D++ + V V GR EL+DE Q F VIVDYAHTPD L+ +L++
Sbjct: 299 ALAAYTAGLALGLPAPDVITALAGVSGVAGRFELVDEGQDFAVIVDYAHTPDGLANILET 358
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
R++ R+ITV GC G+ DR KRP+M +IA SD+ ++TSDNP EDP I+ D+L G
Sbjct: 359 ARQITGGRLITVFGCGGDRDRTKRPIMGEIAARYSDLAVVTSDNPRTEDPGRIIQDVLEG 418
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V K D Y L L D RR A+ AV + GD+VV+AGKGHE YQ
Sbjct: 419 VS-------KAASPDSY--------LVLED-RREAINRAVDLARPGDVVVIAGKGHEDYQ 462
Query: 360 IEGDKKEFFDDREESREAL 378
I G K FDDR E+R+A+
Sbjct: 463 IIGTTKYPFDDRLEARQAI 481
>gi|229019118|ref|ZP_04175952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus AH1273]
gi|229025361|ref|ZP_04181779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus AH1272]
gi|228735946|gb|EEL86523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus AH1272]
gi|228742134|gb|EEL92300.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus AH1273]
Length = 491
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 229/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + ++N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAILNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VASDIMARDIVMTSGGTTFTLVTPYETVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +A + + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGNVYCIVGCGGDRDRTKRPIMASVAAEYATHAIYTSDNPRSEDPKAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ CA+A ++ D++++AGKGHET
Sbjct: 423 NG--------------------ANGNNYEVIIDRKEAIHCAIAKAKDADIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G K FDDRE ++EA+
Sbjct: 463 YQIIGKKVHHFDDREVAKEAI 483
>gi|392375350|ref|YP_003207183.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
(UDP-N-acetylmuramyl-tripeptide synthetase) [Candidatus
Methylomirabilis oxyfera]
gi|258593043|emb|CBE69354.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
(UDP-N-acetylmuramyl-tripeptide synthetase) [Candidatus
Methylomirabilis oxyfera]
Length = 504
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 161/382 (42%), Positives = 229/382 (59%), Gaps = 23/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ Y + + +LE+ RTTP++ +Q L+ +M ++VVME SSH LAL R
Sbjct: 132 GHQVGLIGTIGYRCN-ELELEAARTTPESCDLQALLERMARLRADSVVMEVSSHALALHR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM----VDPERHRKVVNIDDPNA 117
+FD+AVFTNLT+DH+DFHGT E YR+AK +F + VVN+DDP A
Sbjct: 191 VDGCEFDVAVFTNLTQDHLDFHGTMEAYRSAKLSMFEGLGVGSTKTTEKAAVVNLDDPAA 250
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F+ G V ++++E AD+ ++ + + TP G I S LLGR+N+
Sbjct: 251 DLFL--GATRVRRYSYSVEGP-ADLSVADVKMGPDGIRCRLQTPWGTTAIRSPLLGRYNL 307
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
NILAA A G+ +GA L + GI + VPGRCE ++ QAF V+VDYAHTPDAL R+L
Sbjct: 308 SNILAAAATGLHLGADLSAVADGIAALHHVPGRCERVETGQAFSVMVDYAHTPDALRRVL 367
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
R+ P R+I + GC GE DRGKRPLM + A + +D T++TSDNP EDP I++++
Sbjct: 368 RMARQCCPGRLIVLFGCGGERDRGKRPLMGEAALELADFTVITSDNPRGEDPHQIIEEIE 427
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G +G+ Y + + R +A+R A+++ GDMVV+AGKGHET
Sbjct: 428 TGAKKV------WGQGKGYVTILD---------RGMAIREALSLAGRGDMVVIAGKGHET 472
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI D+ FDDR +REAL
Sbjct: 473 YQILRDRTIPFDDRLVAREALH 494
>gi|312111771|ref|YP_003990087.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
gi|336236154|ref|YP_004588770.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Geobacillus thermoglucosidasius C56-YS93]
gi|311216872|gb|ADP75476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
gi|335363009|gb|AEH48689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Geobacillus thermoglucosidasius C56-YS93]
Length = 490
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/386 (40%), Positives = 222/386 (57%), Gaps = 40/386 (10%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ +V I GD+ + TTP+++++Q +M G + +ME SSH L +GR
Sbjct: 129 KTGLIGTVHIKI-GDDAYPTQNTTPESLLLQRTFKQMADEGVDVAIMEVSSHALHMGRVH 187
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATS 119
D+D+AVFTNLT+DH+D+HGT EEYRNAK LF+++ + H + V+N DDP +
Sbjct: 188 GCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDHERPKFAVLNNDDPASQY 247
Query: 120 FIAQGNPDVPVVTFAMEN------KKADVHPLKFELSLFETQVLVNTPHGILEISSGLLG 173
+ + V+T+ + K+ D+ P L TPHG + + L+G
Sbjct: 248 Y--KHMTAATVITYGTKTDSDIMAKRIDIVPNGMAFDLI-------TPHGTARVKTKLIG 298
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
N+YN+LAAV+ + G P IV IEE+ V GR E +DE Q F VIVDYAHTPD+L
Sbjct: 299 LFNVYNLLAAVSACLVSGIPFPVIVEAIEEISGVAGRFETVDEGQDFTVIVDYAHTPDSL 358
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L + ++ A + + VVGC G+ DR KRPLM K+A +DV I TSDNP +EDP IL
Sbjct: 359 ENVLKTAQQFARKNVYVVVGCGGDRDRTKRPLMAKVAVQYADVAIFTSDNPRSEDPEQIL 418
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
DM AGV G R R+ A+ A+ +EGD+V++AGK
Sbjct: 419 RDMEAGV--------------------PGERYVTIVDRKEAIYYAIEQAQEGDIVLIAGK 458
Query: 354 GHETYQIEGDKKEFFDDREESREALQ 379
GHETYQI GD+ FDDR +REA++
Sbjct: 459 GHETYQIIGDRVIAFDDRLVAREAIK 484
>gi|423720687|ref|ZP_17694869.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Geobacillus thermoglucosidans TNO-09.020]
gi|383366040|gb|EID43331.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Geobacillus thermoglucosidans TNO-09.020]
Length = 490
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/386 (40%), Positives = 222/386 (57%), Gaps = 40/386 (10%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ +V I GD+ + TTP+++++Q +M G + +ME SSH L +GR
Sbjct: 129 KTGLIGTVHIKI-GDDAYPTQNTTPESLLLQRTFKQMADEGVDVAIMEVSSHALHMGRVH 187
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATS 119
D+D+AVFTNLT+DH+D+HGT EEYRNAK LF+++ + H + V+N DDP +
Sbjct: 188 GCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDHERPKFAVLNNDDPASQY 247
Query: 120 FIAQGNPDVPVVTFAMEN------KKADVHPLKFELSLFETQVLVNTPHGILEISSGLLG 173
+ + V+T+ + K+ D+ P L TPHG + + L+G
Sbjct: 248 Y--KHMTAATVITYGTKTDSDIMAKRIDIVPNGMAFDLI-------TPHGTARVKTKLIG 298
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
N+YN+LAAV+ + G P IV IEE+ V GR E +DE Q F VIVDYAHTPD+L
Sbjct: 299 LFNVYNLLAAVSACLVSGIPFPVIVEAIEEISGVAGRFETVDEGQDFTVIVDYAHTPDSL 358
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L + ++ A + + VVGC G+ DR KRPLM K+A +DV I TSDNP +EDP IL
Sbjct: 359 ENVLKTAQQFARKNVYVVVGCGGDRDRTKRPLMAKVAVQYADVAIFTSDNPRSEDPEQIL 418
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
DM AGV G R R+ A+ A+ +EGD+V++AGK
Sbjct: 419 RDMEAGV--------------------PGERYVTIVDRKEAIYYAIEQAQEGDIVLIAGK 458
Query: 354 GHETYQIEGDKKEFFDDREESREALQ 379
GHETYQI GD+ FDDR +REA++
Sbjct: 459 GHETYQIIGDRVIAFDDRLVAREAIK 484
>gi|423418177|ref|ZP_17395266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG3X2-1]
gi|401106450|gb|EJQ14411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG3X2-1]
Length = 491
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 229/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + ++N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAILNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VASDIMARDIVMTSGGTTFTLVTPYETVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +A + + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGNVYCIVGCGGDRDRTKRPIMASVAAEYATHAIYTSDNPRSEDPKAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ CA+A ++ D++++AGKGHET
Sbjct: 423 NG--------------------ANGNNYEVIIDRKEAIHCAIAKAKDADIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|448237283|ref|YP_007401341.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Geobacillus sp. GHH01]
gi|445206125|gb|AGE21590.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Geobacillus sp. GHH01]
Length = 489
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/382 (41%), Positives = 231/382 (60%), Gaps = 26/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +V + GD + TTP+++++Q +M+ G E V ME SSH L GR
Sbjct: 127 GKKTGLIGTVHIKV-GDRSYPAANTTPESLILQRTFKQMVDEGVEFVAMEVSSHALHQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+HGT EEYRNAK LF+++ + R+ V+N DDP +
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P+VT+ M +K+DV + ++ + TPHG + + L+G N+
Sbjct: 246 QYY--KHMTAAPIVTYGMR-EKSDVMAEQIRMTAGGMAFRLCTPHGSAAVETKLVGSFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YNILAA A +A G LE I + +V+ VPGR E +DE Q F +IVDYAHTPD+L L
Sbjct: 303 YNILAAAAACLASGFSLETIAAALADVEPVPGRFETVDEGQNFTIIVDYAHTPDSLENAL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+VR+LA R + V+GC G+ DR KRPLM ++A +DV I TSDNP +EDP IL DM
Sbjct: 363 KTVRQLAKRNVYVVIGCGGDRDRSKRPLMAQVAVRYADVAIFTSDNPRSEDPKQILRDME 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV + +++ +P+ R A+R A+ +EGD+V++AGKGHET
Sbjct: 423 AGVSAEIGKHVT---------IPD---------REEAIRYAIGQAQEGDVVLIAGKGHET 464
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G+ FDDR +R A++
Sbjct: 465 YQIIGNDVIEFDDRAVARAAVK 486
>gi|297530718|ref|YP_003671993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3]
gi|297253970|gb|ADI27416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3]
Length = 489
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/382 (41%), Positives = 231/382 (60%), Gaps = 26/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +V + GD + TTP+++++Q +M+ G E V ME SSH L GR
Sbjct: 127 GKKTGLIGTVHIKV-GDRSYPAANTTPESLILQRTFKQMVDEGVEFVAMEVSSHALHQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+HGT EEYRNAK LF+++ + R+ V+N DDP +
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P+VT+ M +K+DV + ++ + TPHG + + L+G N+
Sbjct: 246 QYY--KHMTAAPIVTYGMR-EKSDVMAEQIRITAGGMAFRLCTPHGSAAVETKLVGSFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YNILAA A +A G LE I + +V+ VPGR E +DE Q F +IVDYAHTPD+L L
Sbjct: 303 YNILAAAAACLASGFSLETIAAALADVEPVPGRFETVDEGQNFTIIVDYAHTPDSLENAL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+VR+LA R + V+GC G+ DR KRPLM ++A +DV I TSDNP +EDP IL DM
Sbjct: 363 KTVRQLAKRNVYVVIGCGGDRDRSKRPLMAQVAVRYADVAIFTSDNPRSEDPKQILRDME 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV + +++ +P+ R A+R A+ +EGD+V++AGKGHET
Sbjct: 423 AGVSAEIGKHVT---------IPD---------REEAIRYAIGQAQEGDVVLIAGKGHET 464
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G+ FDDR +R A++
Sbjct: 465 YQIIGNDVIEFDDRAVARAAVK 486
>gi|334341863|ref|YP_004546843.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfotomaculum ruminis
DSM 2154]
gi|334093217|gb|AEG61557.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum ruminis
DSM 2154]
Length = 488
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/379 (43%), Positives = 225/379 (59%), Gaps = 28/379 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL+ G++ ++ I GD L TTP++ +Q L+ +M G +AV ME SSH LAL R
Sbjct: 129 GLKPGVIGTIHNLI-GDKVLPVTNTTPESPDLQRLLGEMTDAGVQAVAMEVSSHALALHR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ V++ + VFTNLT+DH+DFHGT +EY AKAKLF + + V+N DDP A +
Sbjct: 188 VAGVNYKVGVFTNLTQDHLDFHGTMKEYLKAKAKLFQK----DLQYAVINGDDPAAKQLV 243
Query: 122 --AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+QG V T+ +E + DV +++ V P G ++S L GR N+YN
Sbjct: 244 KLSQGK----VYTYGIE-QVVDVRAKDIQVTARGVSFTVTGPWGEQKLSLKLTGRFNVYN 298
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
LAA VG+A+G D+ +EEV V GR EL+D Q F V+VDYAHTPD L +L +
Sbjct: 299 ALAAYTVGMALGFNGADVKSALEEVAGVAGRFELVDRGQDFAVVVDYAHTPDGLKNILTT 358
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
R++ R+ITV GC G+ DR KRPLM +IA + SD+ I+TSDNP EDP+ I++D++ G
Sbjct: 359 ARQITRGRLITVFGCGGDRDRTKRPLMGEIAAEHSDLVIVTSDNPRTEDPVKIIEDVVVG 418
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V ++ P+ +R+ RR A+ AV + EGD+VV+AGKGHE YQ
Sbjct: 419 VEKKIK--------------PDKYRVLTD--RREAITRAVHLAREGDVVVIAGKGHEDYQ 462
Query: 360 IEGDKKEFFDDREESREAL 378
I G K FDDRE EAL
Sbjct: 463 ILGTTKIHFDDREVVGEAL 481
>gi|261419312|ref|YP_003252994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacillus sp. Y412MC61]
gi|319766128|ref|YP_004131629.1| UDP-N-acetylmuramyl tripeptide synthetase [Geobacillus sp.
Y412MC52]
gi|261375769|gb|ACX78512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
Y412MC61]
gi|317110994|gb|ADU93486.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
Y412MC52]
Length = 489
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/382 (41%), Positives = 231/382 (60%), Gaps = 26/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +V + GD + TTP+++++Q +M+ G E V ME SSH L GR
Sbjct: 127 GKKTGLIGTVHIKV-GDRSYPAANTTPESLILQRTFKQMVDEGVEFVAMEVSSHALHQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+HGT EEYRNAK LF+++ + R+ V+N DDP +
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P+VT+ M +K+DV + ++ + TPHG + + L+G N+
Sbjct: 246 QYY--KHMTAAPIVTYGMR-EKSDVMAEQIRITAGGMAFRLCTPHGSAAVETKLVGSFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YNILAA A +A G LE I + +V+ VPGR E +DE Q F +IVDYAHTPD+L L
Sbjct: 303 YNILAAAAACLASGFSLETIAAALADVEPVPGRFETVDEGQNFTIIVDYAHTPDSLENAL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+VR+LA R + V+GC G+ DR KRPLM ++A +DV I TSDNP +EDP IL DM
Sbjct: 363 KTVRQLAKRNVYVVIGCGGDRDRSKRPLMAQVAVRYADVAIFTSDNPRSEDPKQILRDME 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV + +++ +P+ R A+R A+ +EGD+V++AGKGHET
Sbjct: 423 AGVSAEIGKHVT---------IPD---------REEAIRYAIGQAQEGDVVLIAGKGHET 464
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G+ FDDR +R A++
Sbjct: 465 YQIIGNDVIEFDDRAVARAAVK 486
>gi|423389776|ref|ZP_17367002.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG1X1-3]
gi|401641867|gb|EJS59584.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG1X1-3]
Length = 491
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 229/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + ++N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAILNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VASDIMARDIVMTSGGTTFTLVTPYETVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +A + + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGNVYCIVGCGGDRDRTKRPIMASVAAEYATHAIYTSDNPRSEDPKAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N + + + R+ A+ CA+A ++ D++++AGKGHET
Sbjct: 423 NGASG------------------NNYEVIID--RKEAIHCAIAKAKDADIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|89099604|ref|ZP_01172479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. NRRL B-14911]
gi|89085757|gb|EAR64883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. NRRL B-14911]
Length = 463
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/382 (40%), Positives = 226/382 (59%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ + G+ LE+ TTP+++ +Q A M+ EA VME SSH L GR
Sbjct: 104 GKSTGLIGTMYTKVAGET-LETKNTTPESLTLQKTFASMVEKKVEAAVMEVSSHALDEGR 162
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
DF++AVFTNLT+DH+D+H T +EYR AK LF+++ H K V+N DDP +
Sbjct: 163 VHGCDFNVAVFTNLTQDHLDYHKTMDEYRRAKGLLFAQLGSAFYHNKPKYAVLNADDPAS 222
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + + ++T+A++N+ AD+ + ++ T + +P G+ ++ L+G+ ++
Sbjct: 223 AEY--RKSTAAQILTYAIDNE-ADLRAVHIQMDARGTSFDLVSPFGVHPVAMQLIGKFSV 279
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+ +A G LE I+ I V VPGR E +D Q F VIVDYAHTPD+L L
Sbjct: 280 YNVLAAIGAALASGLELEAILESISTVKGVPGRFETVDAGQDFSVIVDYAHTPDSLENAL 339
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++V+E A RI VVGC G+ DR KRPLM KIA + + TSDNP +EDP +IL DM
Sbjct: 340 ETVKEFAEGRIFVVVGCGGDRDRTKRPLMAKIACGLATDAVFTSDNPRSEDPEEILKDMA 399
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV P G+ + D R+ A+ +V +GD++++AGKGHET
Sbjct: 400 AGV-------------------PEGNYTMIAD-RKEAIAYSVGAAGKGDVILIAGKGHET 439
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ G + FDDR +REA+Q
Sbjct: 440 YQQIGGQTFDFDDRTAAREAIQ 461
>gi|212639660|ref|YP_002316180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Anoxybacillus flavithermus WK1]
gi|212561140|gb|ACJ34195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
[Anoxybacillus flavithermus WK1]
Length = 488
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 151/382 (39%), Positives = 230/382 (60%), Gaps = 29/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD+ + TTP+++++QN+ KM+ + V ME SSH L +GR
Sbjct: 127 GKKTGLIGTINMKI-GDDTYDVKNTTPESLVLQNMFRKMVDAHVDIVAMEVSSHALHMGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
DFD+AVFTNLT+DH+D+H T E YR +K LF+++ + H++ ++N DD +
Sbjct: 186 VHGCDFDVAVFTNLTQDHLDYHRTMEHYRWSKGLLFAQLGNRFDHQRPKFAILNADDAAS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + + VVT+ + +K +D+ + E++ T + TP +++ + L+G N+
Sbjct: 246 EEY--KKSTAATVVTYGIHHK-SDIMAKQIEITTSGTTFQLITPIETVQVKTKLIGMFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAVA + PL IV I +++ VPGR E++D Q F VIVDYAHTPD+L +L
Sbjct: 303 YNLLAAVAACLVSNIPLSTIVEAIADIEGVPGRFEVVDAGQPFTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++R+ A +R+ VVGC G+ DR KRPLM +IA SDV I TSDNP +EDPL IL+DM
Sbjct: 363 QTIRQFAKKRVFVVVGCGGDRDRTKRPLMAQIAVKYSDVPIFTSDNPRSEDPLVILNDMK 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV + + R+ A+ A+ E+ D++++AGKGHET
Sbjct: 423 QGVAEDVVCIVD---------------------RKEAITYAIEQAEKDDIILIAGKGHET 461
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G FDDR +REA+Q
Sbjct: 462 YQIIGKDVFHFDDRVVAREAIQ 483
>gi|375008081|ref|YP_004981714.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359286930|gb|AEV18614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
ligase [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 489
Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 159/382 (41%), Positives = 231/382 (60%), Gaps = 26/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +V + GD + TTP+++++Q + +M+ G E V ME SSH L GR
Sbjct: 127 GKKTGLIGTVHIKV-GDRSYPAANTTPESLILQRMFKQMVDEGVEFVAMEVSSHALHQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+HGT EEYRNAK LF+++ + R+ V+N DDP +
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P+VT+ M +K+DV + ++ + TPHG + + L+G N+
Sbjct: 246 QYY--KHMTAAPIVTYGMR-EKSDVMAEQIRMTAGGMAFRLCTPHGSAAVETKLVGSFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YNILAA A +A G LE I + +V+ VPGR E +DE Q F +IVDYAHTPD+L L
Sbjct: 303 YNILAAAAACLASGFSLETIAAALADVEPVPGRFETVDEGQNFTIIVDYAHTPDSLENAL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+VR+LA R + V+GC G+ D KRPLM ++A +DV I TSDNP +EDP IL DM
Sbjct: 363 KTVRQLAKRNVYVVIGCGGDRDPSKRPLMAQVAVRYADVAIFTSDNPRSEDPKQILRDME 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV + +++ +P+ R A+R A+ +EGD+V++AGKGHET
Sbjct: 423 AGVSAEIGKHVT---------IPD---------REEAIRYAIGQAQEGDVVLIAGKGHET 464
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G+ FDDR +R A++
Sbjct: 465 YQIIGNDVIEFDDRAVARAAVK 486
>gi|415886473|ref|ZP_11548253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus methanolicus MGA3]
gi|387587160|gb|EIJ79483.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus methanolicus MGA3]
Length = 486
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/382 (39%), Positives = 231/382 (60%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD E+ TTP+++ +Q +M+ +G E VME SSH L GR
Sbjct: 127 GKKTGLIGTM-YTKIGDQTFETKNTTPESLTLQKTFKQMIDSGVETAVMEVSSHALVYGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+++AVFTNLT+DH+D+H T +EYR AK LFS++ + H K V+N DDP +
Sbjct: 186 VHGCDYNVAVFTNLTQDHLDYHKTMDEYRRAKGLLFSQLGNTFCHDKPKFAVLNADDPAS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+I + V+T+ ++ + AD+ +++ T + TP G+ +IS L+G+ ++
Sbjct: 246 REYIQ--STAAHVITYGID-QPADIKAENLKITANGTVFDLITPFGVEKISMKLIGKFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LA++ + G PL+ +++ IEEV+ VPGR EL++ Q F VIVDYAHTPD+L +L
Sbjct: 303 YNVLASIGACLVSGIPLKQMIKSIEEVEGVPGRFELVNAGQDFAVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+V++ A R I VVGC G+ DR KRPLM KIA + I TSDNP +EDPL I+ DM
Sbjct: 363 KTVKQFAERNIYVVVGCGGDRDRTKRPLMAKIACKYATHPIFTSDNPRSEDPLQIIRDME 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV + Y + + R+ A+ A+ ++GD++++AGKGHET
Sbjct: 423 EGV-----------KGKQYKSIVD---------RKEAITYAINNAQKGDVILIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ G + FDDR ++EA++
Sbjct: 463 YQQIGSEVFDFDDRVVAKEAIE 484
>gi|56419650|ref|YP_146968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacillus kaustophilus HTA426]
gi|81347689|sp|Q5L0Y0.1|MURE_GEOKA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|56379492|dbj|BAD75400.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
[Geobacillus kaustophilus HTA426]
Length = 489
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 159/382 (41%), Positives = 230/382 (60%), Gaps = 26/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +V + GD + TTP+++++Q +M+ G E V ME SSH L GR
Sbjct: 127 GKKTGLIGTVHIKV-GDRSYPAANTTPESLILQRTFKQMVDEGVEFVAMEVSSHALHQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+HGT EEYRNAK LF+++ + R+ V+N DDP +
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P+VT+ M +K+DV + ++ + TPHG + + L+G N+
Sbjct: 246 QYY--KHMTAAPIVTYGMR-EKSDVMAEQIRMTAGGMAFRLCTPHGSAAVETKLVGSFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YNILAA A +A G LE I + +V+ VPGR E +DE Q F +IVDYAHTPD+L L
Sbjct: 303 YNILAAAAACLASGFSLETIAAALADVEPVPGRFETVDEGQNFTIIVDYAHTPDSLENAL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+VR+LA R + V+GC G+ D KRPLM ++A +DV I TSDNP +EDP IL DM
Sbjct: 363 KTVRQLAKRNVYVVIGCGGDRDPSKRPLMAQVAVRYADVAIFTSDNPRSEDPKQILRDME 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV + +++ +P+ R A+R A+ +EGD+V++AGKGHET
Sbjct: 423 AGVSAEIGKHVT---------IPD---------REEAIRYAIGQAQEGDVVLIAGKGHET 464
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G+ FDDR +R A++
Sbjct: 465 YQIIGNDVIEFDDRAVARAAVK 486
>gi|389573367|ref|ZP_10163442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. M 2-6]
gi|388427064|gb|EIL84874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. M 2-6]
Length = 491
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 158/379 (41%), Positives = 226/379 (59%), Gaps = 28/379 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ Y D LE TTP++V +Q +ML + +ME SSH L LGR
Sbjct: 131 KTGLIGTM-YMKVNDEILEVKNTTPESVTLQKTFKQMLDQDVDTAIMEVSSHALHLGRVH 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATS 119
D+DIAVFTNLT+DH+D+H T EEY++AK+ LFS++ +H K ++N DD ++
Sbjct: 190 GCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLFSQLGSAFQHDKPKHAILNADDEASSY 249
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
F + ++T+ +E +++DV ++ TQ + TP G ++ L+G+ N+YN
Sbjct: 250 F--EKVTAAEIMTYGLE-QESDVMAKNIQIKPKGTQFDLITPIGTKNVTVALVGKFNVYN 306
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
ILAAV+VGI G E IV IEE++ V GR EL++ +Q F VIVDYAHTPD+L +L +
Sbjct: 307 ILAAVSVGIVSGLTFETIVSAIEELEGVKGRFELVNCDQDFPVIVDYAHTPDSLENVLTT 366
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
REL RI VVGC G+ D+ KRP M +IA +D + TSDNP +EDP IL DM G
Sbjct: 367 CRELTEGRIFCVVGCGGDRDKTKRPQMAQIAVKYADEPVFTSDNPRSEDPSAILKDMENG 426
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V N YY N R+ A+ A+A ++GD V++AGKGHETYQ
Sbjct: 427 V-----------PNAYYHSFVN---------RKQAIFFAIANAKKGDTVLIAGKGHETYQ 466
Query: 360 IEGDKKEFFDDREESREAL 378
I GD+ FDD + + +A+
Sbjct: 467 IIGDQVYDFDDAKVAADAI 485
>gi|338814771|ref|ZP_08626757.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetonema longum DSM
6540]
gi|337273330|gb|EGO61981.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetonema longum DSM
6540]
Length = 498
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 156/386 (40%), Positives = 225/386 (58%), Gaps = 31/386 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ +++ YI GD L TTPD + +Q+L+ +M + VVME SSH LALGR
Sbjct: 133 GYRVGLIGTINSYI-GDRVLPVKNTTPDVIDLQSLLRQMADAQMDYVVMEVSSHALALGR 191
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK------VVNIDDP 115
+ ++D+ VFTNLT+DH+DFH T E YR AKA+LF+ + +H K ++N+DDP
Sbjct: 192 VAGCEYDVGVFTNLTQDHLDFHKTLENYRCAKAQLFAML--ASQHGKQGSKAAIINLDDP 249
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+ I Q V V+T+ + ++ D+ ++ V TP G L + + G
Sbjct: 250 AGQTMI-QAVGKVKVLTYGI-HQTTDILAQDIDVQAKGASCRVRTPQGDLALQLKITGIF 307
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
NIYN++AA V +A PL + +E +V GR E++D Q+F VIVDYAHTPD L
Sbjct: 308 NIYNMMAACGVALAENVPLATLRSALESFRSVAGRFEIVDAVQSFSVIVDYAHTPDGLEN 367
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +V + A RII+V GC G+ D+ KRP+M K+A SD+ I TSDNP +EDP+ IL +
Sbjct: 368 ILRTVGQFAKGRIISVFGCGGDRDKTKRPIMGKLAAAMSDIVIATSDNPRSEDPVQILKE 427
Query: 296 MLAGV--GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
+ G+ G T Y E RR A++ A+++ + D+V++AGK
Sbjct: 428 IEVGIKEGLTTNTYEVIIE------------------RREAIKRAISLAQPDDIVIIAGK 469
Query: 354 GHETYQIEGDKKEFFDDREESREALQ 379
GHETYQI DK FDDRE +RE +Q
Sbjct: 470 GHETYQILKDKTIHFDDREVAREWIQ 495
>gi|157692192|ref|YP_001486654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus pumilus SAFR-032]
gi|157680950|gb|ABV62094.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus pumilus SAFR-032]
Length = 493
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 158/379 (41%), Positives = 228/379 (60%), Gaps = 28/379 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ Y D+ L+ TTP++V +Q +ML + +ME SSH L LGR
Sbjct: 133 KTGLIGTM-YMKVNDDILDVKNTTPESVTLQKTFKQMLDQDVDTAIMEVSSHALHLGRVH 191
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATS 119
D+DIAVFTNLT+DH+D+H T EEY++AK+ LFS++ H K ++N DD ++
Sbjct: 192 GCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLFSQLGSAFHHNKPKHAILNADDEASSY 251
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
F + V+T+A+E +KADV ++ TQ + TP G +++ L+G+ N+YN
Sbjct: 252 F--EKVTAAEVMTYALE-QKADVMAKNIQIMPKGTQFDLVTPIGTKKVTVALVGKFNVYN 308
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
ILAAV+VGI G E IV IEE++ V GR EL++ +Q F VIVDYAHTPD+L +L +
Sbjct: 309 ILAAVSVGIVSGLTFETIVSAIEELEGVKGRFELVNCDQDFPVIVDYAHTPDSLENVLTT 368
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
REL +I V+GC G+ D+ KRP M +IA +D + TSDNP +EDP IL DM G
Sbjct: 369 CRELTEGKIFCVIGCGGDRDKTKRPQMAQIAVKYADEPVFTSDNPRSEDPSAILKDMENG 428
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V + YY N R+ A+ A+A ++GD V++AGKGHETYQ
Sbjct: 429 V-----------PDAYYHSFVN---------RKQAIFFAIANAKKGDTVLIAGKGHETYQ 468
Query: 360 IEGDKKEFFDDREESREAL 378
I GD+ FDD + + +A+
Sbjct: 469 IIGDQVYDFDDAKIAVDAI 487
>gi|163941654|ref|YP_001646538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus weihenstephanensis KBAB4]
gi|163863851|gb|ABY44910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
weihenstephanensis KBAB4]
Length = 491
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 229/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY+NAK LF+++ + H + ++N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKNAKGLLFAQLGNSYHHNREKYAILNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VASDIMARDIVMTSGGTTFTLVTPYETVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT+ + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAIYTSDNPRSEDPKAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
V NG+ + R+ A+R A++ + D++++AGKGHET
Sbjct: 423 NDV--------------------NGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|229098385|ref|ZP_04229330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock3-29]
gi|229117411|ref|ZP_04246787.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock1-3]
gi|423378233|ref|ZP_17355517.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG1O-2]
gi|423441354|ref|ZP_17418260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG4X2-1]
gi|423448420|ref|ZP_17425299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG5O-1]
gi|423464428|ref|ZP_17441196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG6O-1]
gi|423533770|ref|ZP_17510188.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HuB2-9]
gi|423540974|ref|ZP_17517365.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HuB4-10]
gi|423547212|ref|ZP_17523570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HuB5-5]
gi|423623006|ref|ZP_17598784.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD148]
gi|228666021|gb|EEL21487.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock1-3]
gi|228685002|gb|EEL38935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock3-29]
gi|401129014|gb|EJQ36697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG5O-1]
gi|401172162|gb|EJQ79383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HuB4-10]
gi|401178933|gb|EJQ86106.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HuB5-5]
gi|401259779|gb|EJR65953.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD148]
gi|401636499|gb|EJS54253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG1O-2]
gi|402418015|gb|EJV50315.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG4X2-1]
gi|402420695|gb|EJV52966.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG6O-1]
gi|402463989|gb|EJV95689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HuB2-9]
Length = 491
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 230/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRKKYAVLNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ ++++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VSSDIMAKDIVMTSGGTTFTLVTPYESVDVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +A + + I TSDNP +EDP+ ILDDM+
Sbjct: 363 KTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQAIYTSDNPRSEDPVAILDDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N + + + R+ A+R A++ + D++++AGKGHET
Sbjct: 423 KGAKG------------------NNYEVIVD--RKEAIRYAISKAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|433446205|ref|ZP_20410264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Anoxybacillus flavithermus TNO-09.006]
gi|432000501|gb|ELK21395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Anoxybacillus flavithermus TNO-09.006]
Length = 488
Score = 276 bits (707), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 149/382 (39%), Positives = 230/382 (60%), Gaps = 29/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD+ + TTP+++++QN+ KM+ + V ME SSH L +GR
Sbjct: 127 GKKTGLIGTINMKI-GDDTYDVKNTTPESLILQNMFRKMVDAHVDVVAMEVSSHALHMGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
DFD+AVFTNLT+DH+D+H T + YR +K LF+++ + HR+ ++N DD +
Sbjct: 186 VHGCDFDVAVFTNLTQDHLDYHQTMDHYRWSKGLLFAQLGNRFDHRRPKFAILNADDAAS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + + VVT+ + +K +D+ + E++ T + TP +++ + L+G N+
Sbjct: 246 EEY--KKSTAATVVTYGIHHK-SDIMAKQIEITTSGTTFQLVTPIETVQVRTKLIGMFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAV + PL IV I +++ VPGR E++D Q F VIVDYAHTPD+L +L
Sbjct: 303 YNLLAAVGACLVSNIPLSTIVEAIADIEGVPGRFEVVDAGQPFTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++R+ A +R+ VVGC G+ DR KRPLM +IA DV I TSDNP +EDP+ IL+DM
Sbjct: 363 QTIRQFAKKRVFVVVGCGGDRDRTKRPLMAQIAVKYGDVPIFTSDNPRSEDPMAILNDMK 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV + + + D R+ A+ A+ E+ D++++AGKGHET
Sbjct: 423 QGVTEDV--------------------ICIVD-RKEAITYAIEQAEKDDIILIAGKGHET 461
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G FDDR +REA+Q
Sbjct: 462 YQIIGKDVFHFDDRVVAREAIQ 483
>gi|85858520|ref|YP_460722.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Syntrophus aciditrophicus SB]
gi|85721611|gb|ABC76554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Syntrophus aciditrophicus SB]
Length = 509
Score = 276 bits (707), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 154/382 (40%), Positives = 227/382 (59%), Gaps = 9/382 (2%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G+L +V+Y G +E+P TTP+++ +Q ++ +M+ +G +V E SSH + L R
Sbjct: 131 GFSCGVLGTVNYRYPG-LVMEAPNTTPESLDLQRIIREMVDHGVTHLVAEVSSHAVDLRR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV----DPERHRKVVNIDDPNA 117
+ DFD+ +FTNLT+DH+D+H T E Y AK + FS ++ R+ VN DDP
Sbjct: 190 IDDCDFDLGIFTNLTQDHLDYHKTMENYFQAKKRFFSEVLPGGRKQHRYAMAVNADDPWG 249
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
I + +TF +E +KAD+ F+LSL + + ++ + L+G+ N+
Sbjct: 250 KRLIRETGEISRPLTFGIE-EKADIRASSFDLSLDGIRAEIVVGSMSFDVDTALIGKFNL 308
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAV+ +A+ P+E I RG+ ++AVPGR E + V VDYAHT DAL R+L
Sbjct: 309 YNVLAAVSASVALRVPIEAIRRGVRAMNAVPGRLEKVSGSTQPDVFVDYAHTDDALRRVL 368
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
S+ RIITV GC G+ DRGKRPLM K+AT+ SD+TILTSDNP +EDPL I+ D+
Sbjct: 369 QSLSPFKRGRIITVFGCGGDRDRGKRPLMGKVATNYSDLTILTSDNPRSEDPLSIIRDIE 428
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+ + + G ++ G + RR A+ A+ D+V++AGKGHE
Sbjct: 429 VGIN---SQSIPEGSSEDLSRGMTGRGYVVIPDRREAIGAAIRSARPSDIVLIAGKGHED 485
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G+K+ FFDDR ++E LQ
Sbjct: 486 YQIIGEKRLFFDDRAVAKEFLQ 507
>gi|423612129|ref|ZP_17587990.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD107]
gi|401247136|gb|EJR53480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD107]
Length = 491
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 229/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + ++N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHNTMEEYKHAKGLLFAQLGNSFNHNREKYAILNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ +E +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIE-VSSDIMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+++ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVNLQTIIDVIKQLAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP+ ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPVMASVATKYASQAIYTSDNPRSEDPVAILDDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N + + + R+ A+R A++ + D++++AGKGHET
Sbjct: 423 NGAKG------------------NNYEVIVD--RKEAIRYAISKVKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|118581694|ref|YP_902944.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pelobacter propionicus DSM 2379]
gi|118504404|gb|ABL00887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pelobacter propionicus DSM 2379]
Length = 536
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/394 (40%), Positives = 224/394 (56%), Gaps = 31/394 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ +L ++SY GD + + TTP++ +Q ++ G +A VME SSH L R
Sbjct: 152 GIPAAVLGTISYRF-GDTVITASHTTPESTELQAAFTQLAAAGAKAFVMEVSSHALEQKR 210
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPER----HRKVVNIDDPNA 117
FD+ +F+NLTRDH+D+H T E YR AK +LFS ++ P R +N+DD
Sbjct: 211 VDGCHFDVGIFSNLTRDHLDYHVTMESYREAKLRLFSELLKPTADKPLRRAAINMDDEQG 270
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ A+ PV+ + + + DV + LS+ + + TP G +++SS LLGR N+
Sbjct: 271 ATVAARAA--CPVIGYGI--CRGDVRAEELSLSVDGIRARLVTPKGSIDVSSRLLGRFNL 326
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
NILAAV+ GIA+ PLE I GIE VPGR E +D ++VDYAHT DAL +L
Sbjct: 327 SNILAAVSAGIALDLPLEAIRAGIEGHATVPGRMERVDNRCGITLLVDYAHTGDALENVL 386
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ELA RIITV GC G+ D GKRP+M +IA SD+ I+TSDNP EDP IL+ +
Sbjct: 387 TTLKELAQGRIITVFGCGGDRDPGKRPIMGRIAASMSDLAIVTSDNPRTEDPFSILEQIR 446
Query: 298 AGVG-WTMQEY------------LKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEE 344
G+ ++EY L G + + L N RR A+ AV +
Sbjct: 447 GGITPLGIREYGVDELADRSGKGLAEGADKGFVSLEN---------RREAISLAVRLARP 497
Query: 345 GDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
GD+V++AGKGHE YQI G K FDDREE+R AL
Sbjct: 498 GDIVLLAGKGHEDYQIIGRTKHHFDDREEARLAL 531
>gi|196247739|ref|ZP_03146441.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16]
gi|196212523|gb|EDY07280.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16]
Length = 489
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/382 (42%), Positives = 228/382 (59%), Gaps = 26/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +V I GD + TTP+++++Q +M+ G E V ME SSH L GR
Sbjct: 127 GKKTGLIGTVGTKI-GDRSYPAVNTTPESLVLQRTFKQMVDEGVEFVTMEVSSHALHQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+HGT EEYRNAK LF+++ + R+ V+N DDP +
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P++T+ ++ +K+DV + E++ + TPHG + I + L+G N+
Sbjct: 246 QYY--KHMTAAPIITYGIK-EKSDVMAEQIEMTPGGMAFQLCTPHGTMAIETKLVGLFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A +A G L I + V VPGR E +DE Q F VIVDYAHTPD++ L
Sbjct: 303 YNLLAATAACLASGFSLATIAEALANVSPVPGRFETVDEGQNFTVIVDYAHTPDSVENAL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+VR+ A R + V+GC G+ DR KRPLM + A +DV + TSDNP +EDP IL DM
Sbjct: 363 KTVRQFAKRNVYVVIGCGGDRDRTKRPLMAQAAVRYADVAVFTSDNPRSEDPRQILRDME 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV GE Y +P+ R A+R A+ +EGD+V++AGKGHET
Sbjct: 423 AGVSA--------GEGTYV-TIPD---------REEAIRYAIGQAQEGDVVLIAGKGHET 464
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI GD FDDR +R A++
Sbjct: 465 YQIIGDDVIDFDDRAVARAAVK 486
>gi|336113693|ref|YP_004568460.1| UDP-N-acetylmuramyl tripeptide synthetase [Bacillus coagulans 2-6]
gi|335367123|gb|AEH53074.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 2-6]
Length = 485
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 229/382 (59%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ Y GD LE+ TTPD++ +Q + +M G VME SSH L GR
Sbjct: 126 GRTTGLIGTM-YMKIGDETLETKNTTPDSLTLQKIFHEMNARGVTDCVMEVSSHSLVEGR 184
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD--PERHRK--VVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T EYR AK+ LFS++ + P+ K ++N DD +
Sbjct: 185 VHGCDYDIAVFTNLTQDHLDYHKTMAEYRRAKSLLFSQLGNSCPQDKPKYAILNADDAAS 244
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + VPV+T+ ++ + AD ++ T + TP E+ L+G+ ++
Sbjct: 245 KEF--EQVTAVPVITYGID-RDADFMAENIDMHARGTTFTLVTPFEKREVRLQLVGKFSV 301
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A G+ G PL+ I++ E ++ V GR EL++ Q F VIVDYAHTPD+L +L
Sbjct: 302 YNMLAAIATGVVSGVPLDSIIKTAEAMEGVRGRFELVNGGQDFSVIVDYAHTPDSLENVL 361
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+VR+ A ++I VVGC G+ D+ KRP+M +IA +D I TSDNP +EDPL IL +M
Sbjct: 362 KTVRQFAKKKIFVVVGCGGDRDKTKRPVMAQIACKYADYPIFTSDNPRSEDPLAILREME 421
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV E + Y +P+ RR A++ A+ + GD+V++AGKGHET
Sbjct: 422 KGV-----------EGERYACIPD---------RREAIKTAIFRAKAGDVVLIAGKGHET 461
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G++ FDDRE + E ++
Sbjct: 462 YQIIGNEVHHFDDREVALEMIK 483
>gi|423367959|ref|ZP_17345391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD142]
gi|401082820|gb|EJP91085.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD142]
Length = 491
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 229/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + ++N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAILNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VASDIMARDIVMTSGGTTFTLVTPYETVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT+ + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATYAIYTSDNPRSEDPKAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
V N+Y + R+ A+R A++ + D++++AGKGHET
Sbjct: 423 NDV----------NRNNYEVIVD----------RKEAIRSAISKVKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|423395785|ref|ZP_17372986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG2X1-1]
gi|423406661|ref|ZP_17383810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG2X1-3]
gi|401653527|gb|EJS71071.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG2X1-1]
gi|401659951|gb|EJS77434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG2X1-3]
Length = 491
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 226/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNRYNHNREKYAVLNNDDAVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T ++ TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKDIIMTSGGTTFMLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+ + VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIINVIKNLAGVPGRFEVVDSGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 QTAQQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATYAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 NG--------------------ANGNNYEVITDRKEAIHRAIAKAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|365157050|ref|ZP_09353331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus smithii
7_3_47FAA]
gi|363625784|gb|EHL76795.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus smithii
7_3_47FAA]
Length = 486
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 159/382 (41%), Positives = 221/382 (57%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ Y GD LE+ TTPD++ +Q + +M A ME SSH L GR
Sbjct: 127 GEKAGLIGTM-YIKIGDKTLETKNTTPDSLTLQKVFHQMQKEQVTAAAMEVSSHALVEGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHR-KVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T +EYR AK LF+++ D E+ + V+NIDDP +
Sbjct: 186 VHGCDYDIAVFTNLTQDHLDYHKTMDEYRRAKGLLFAQLGNTFDREKQKFAVLNIDDPAS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
FI + +VT+ +E ++A EL T + P G +I + L G+ N+
Sbjct: 246 EYFIRE--TAAHIVTYGIE-REALFQAKNIELHPSGTTFDLVYPDGECQIKTKLAGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LA++A + IV + +++ V GR +LI E Q F VIVDYAHTPD L +L
Sbjct: 303 YNVLASIAAAYVAKVDFDTIVSAVGDIEGVDGRFQLIHEGQDFSVIVDYAHTPDGLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+VR+L +RI VVGC G+ DR KRPLM K+A + I TSDNP +E+PL IL DM
Sbjct: 363 KTVRQLTDKRIFVVVGCGGDRDRTKRPLMAKVACQYATDPIFTSDNPRSENPLAILKDME 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV E + Y +P+ RR A+ A+ GD+VV+AGKGHET
Sbjct: 423 KGV-----------EGEKYEIIPD---------RREAIFKAIKKASAGDVVVIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI GD+ FDDRE + EAL+
Sbjct: 463 YQIIGDQVLHFDDREVAIEALK 484
>gi|296331093|ref|ZP_06873567.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305674248|ref|YP_003865920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. spizizenii str. W23]
gi|296151737|gb|EFG92612.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305412492|gb|ADM37611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. spizizenii str. W23]
Length = 494
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/381 (41%), Positives = 222/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ Y GD L TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 128 GKRTGLIGTM-YMKIGDETLPVKNTTPESVTLQKTFKKMNDKQVDTAIMEVSSHALSLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T +EYR AK+ LFS++ H R V+N DD +
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEHPKRAVLNADDEAS 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + + T+ ++N ADV ++ T + T G I+ L+G+ N+
Sbjct: 247 AYF--EKVTAAHISTYGIKNN-ADVMAKNITITAQGTSFDLVTNKGTKHITMSLVGQFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAVA IA G P E I +EE+ V GR EL++++Q F VIVDYAHTPD+L +L
Sbjct: 304 YNVLAAVATCIAAGIPFETITAAVEELHGVRGRFELVNQQQEFPVIVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ R++ ++ VVGC G+ D+ KRP M KIA + +D I TSDNP +EDP IL DM
Sbjct: 364 NTCRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV EN+YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 AGV-----------ENEYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G + FDD E + A+
Sbjct: 464 YQQIGSETFDFDDAEVAARAI 484
>gi|229013099|ref|ZP_04170264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus mycoides DSM 2048]
gi|229134724|ref|ZP_04263533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus BDRD-ST196]
gi|229168655|ref|ZP_04296377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus AH621]
gi|423489091|ref|ZP_17465773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BtB2-4]
gi|423494816|ref|ZP_17471460.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus CER057]
gi|423498392|ref|ZP_17475009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus CER074]
gi|423511949|ref|ZP_17488480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HuA2-1]
gi|423518606|ref|ZP_17495087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HuA2-4]
gi|423592089|ref|ZP_17568120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD048]
gi|423598774|ref|ZP_17574774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD078]
gi|423669489|ref|ZP_17644518.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VDM034]
gi|423674332|ref|ZP_17649271.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VDM062]
gi|228614811|gb|EEK71914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus AH621]
gi|228648770|gb|EEL04796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus BDRD-ST196]
gi|228748353|gb|EEL98213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus mycoides DSM 2048]
gi|401150909|gb|EJQ58361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus CER057]
gi|401160441|gb|EJQ67819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus CER074]
gi|401160814|gb|EJQ68189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HuA2-4]
gi|401232222|gb|EJR38724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD048]
gi|401237044|gb|EJR43501.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD078]
gi|401298616|gb|EJS04216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VDM034]
gi|401309883|gb|EJS15216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VDM062]
gi|402432339|gb|EJV64398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BtB2-4]
gi|402450210|gb|EJV82044.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HuA2-1]
Length = 491
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 229/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + ++N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAILNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VASDIMARDIVMTSGGTTFTLVTPYETVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT+ + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAIYTSDNPRSEDPKAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
V NG+ + R+ A+R A++ + D++++AGKGHET
Sbjct: 423 NDV--------------------NGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|423452782|ref|ZP_17429635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG5X1-1]
gi|423470128|ref|ZP_17446872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG6O-2]
gi|401139341|gb|EJQ46903.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG5X1-1]
gi|402437380|gb|EJV69404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG6O-2]
Length = 491
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 230/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + ++N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAILNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VASDIMARDIVMTSGGTTFTLVTPYETVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT+ + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAIYTSDNPRSEDPKAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
ND NG+ + R+ A+R A++ + D++++AGKGHET
Sbjct: 423 ---------------ND-----ANGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|350265828|ref|YP_004877135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349598715|gb|AEP86503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 447
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/381 (41%), Positives = 221/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ Y GD L TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 81 GKRTGLIGTM-YMKIGDETLPVKNTTPESVTLQKTFKKMNDKQVDTAIMEVSSHALSLGR 139
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T +EYR AK+ LFS++ H R V+N DD +
Sbjct: 140 VHGCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEHPKRAVLNADDEAS 199
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + + T+ ++N ADV ++ T + T G I+ L+G+ N+
Sbjct: 200 AYF--EKVTAAHISTYGIKNN-ADVMAKNITITAQGTSFDLVTNKGTKHITMSLVGQFNV 256
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAVA IA G P E I +EE+ V GR EL++++Q F VIVDYAHTPD+L +L
Sbjct: 257 YNVLAAVATCIAAGIPFETITAAVEELHGVRGRFELVNQQQEFPVIVDYAHTPDSLENVL 316
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ R++ ++ VVGC G+ D+ KRP M KIA + +D I TSDNP +EDP IL DM
Sbjct: 317 KTCRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDME 376
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV EN+YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 377 AGV-----------ENEYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 416
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G + FDD E + A+
Sbjct: 417 YQQIGSETFDFDDAEVAARAI 437
>gi|322421367|ref|YP_004200590.1| UDP-N-acetylmuramyl tripeptide synthetase [Geobacter sp. M18]
gi|320127754|gb|ADW15314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18]
Length = 505
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 162/386 (41%), Positives = 227/386 (58%), Gaps = 19/386 (4%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ T +L ++SY G + +P TTP++V +Q ++ ++ G + VME SSH L R
Sbjct: 128 GIPTAVLGTISYRF-GATSIPAPNTTPESVDLQQILRDLVDQGAKGAVMEVSSHSLEQRR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPE----RHRKVVNIDDPNA 117
FD+A+FTNLTRDH+D+H E Y +K +LF+ ++ P R VVN+DDP
Sbjct: 187 ADGCLFDVAIFTNLTRDHLDYHLDMESYYQSKLRLFTDLLAPTGEKPLRRAVVNLDDPYG 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
A+ PV+T+A AD+ + E S+ + +N+P G ++I S LLGR N+
Sbjct: 247 ARIAAEAA--APVLTYAAAGP-ADLTVAEVEFSVHGIRCRLNSPVGEIDIDSDLLGRFNL 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YNIL AV G+A+G P + I GI VPGR E + +Q V+VDYAHT DAL +L
Sbjct: 304 YNILGAVGAGLALGIPKDAIEAGIAGHKKVPGRLERVPNDQGIIVLVDYAHTGDALENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ EL RIIT+ GC G+ D+GKRP+M +IA SD+ I+TSDNP E+P ILDD+
Sbjct: 364 STIAELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSDLAIVTSDNPRTEEPKAILDDIR 423
Query: 298 AGVG-WTMQEYLKYGENDYYPPLPNGHR---LFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
AG+ ++EY L G R + RR AVR A+ GD+V++AGK
Sbjct: 424 AGITPLRLKEY-------SLEELEGGLREKGFATIESRRTAVRAAIMAARPGDIVLLAGK 476
Query: 354 GHETYQIEGDKKEFFDDREESREALQ 379
GHE YQI G +K FDDREE+ AL+
Sbjct: 477 GHEDYQIVGTEKFHFDDREEAAAALK 502
>gi|365840195|ref|ZP_09381396.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Anaeroglobus geminatus F0357]
gi|364562250|gb|EHM40118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Anaeroglobus geminatus F0357]
Length = 406
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/387 (40%), Positives = 227/387 (58%), Gaps = 25/387 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ I D +LE TTPD V +Q L+ M G + VVME SSH LAL R
Sbjct: 39 GYHVGVIGTIHALID-DEELEIRNTTPDVVELQKLLFLMREKGMDYVVMEVSSHALALNR 97
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK-----VVNIDDPN 116
+ +++D AVFTNLT+DH+DFH + E Y AKAKLF+ + E+H K V+N DD +
Sbjct: 98 VAGIEYDTAVFTNLTQDHLDFHKSFENYVAAKAKLFTSLT-TEQHCKDNKTAVINSDDSH 156
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
A + + ++T+ +EN AD+ ++ L + V P G + + + G N
Sbjct: 157 AKEILRAAH--CRILTYGVEND-ADLKGADLKVGLKNSSFTVTGPFGRVSLHMHITGLFN 213
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN LAA+ A G P E + ++ +VPGR EL++ Q F ++VDY+HTPD+L +
Sbjct: 214 VYNTLAAIGAAYAEGIPSETVAGAVQSFRSVPGRFELVEAGQDFAIVVDYSHTPDSLEKA 273
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L + R + PRRII V GC G+ DR KRP+M KI + +D+ I+TSDNP +EDP I+ ++
Sbjct: 274 LTTARAMNPRRIIAVFGCGGDRDRTKRPIMGKIGAENADILIVTSDNPRSEDPECIVSEI 333
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AGV ++ + +Y + + RR A+ AV + E GD+V++AGKGHE
Sbjct: 334 EAGVVTGLK------QGRHYEVITD---------RRAAIMRAVEIAESGDIVLIAGKGHE 378
Query: 357 TYQIEGDKKEFFDDREESREALQYVDE 383
TYQI D FDDRE +REA+Q + E
Sbjct: 379 TYQILKDGTIHFDDREVAREAVQRLKE 405
>gi|134298538|ref|YP_001112034.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfotomaculum
reducens MI-1]
gi|134051238|gb|ABO49209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Desulfotomaculum reducens MI-1]
Length = 486
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 154/378 (40%), Positives = 229/378 (60%), Gaps = 28/378 (7%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
++ G++ ++ I G+ L TTP+++ +Q ++A+ML G + V ME SSH LAL R
Sbjct: 130 VKPGVIGTIHNLI-GEKALAVSNTTPESLDLQKILAQMLDEGVKGVAMEVSSHALALNRV 188
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF-- 120
+ V++D+AVFTN+T+DH+DFH T EEY AKAKLF+ + ++N DDP A
Sbjct: 189 AGVNYDVAVFTNITQDHLDFHNTMEEYLAAKAKLFTTDI----QYAIINADDPAAEELKK 244
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I++G V T+ ++ + AD+ +++ + + P G +++ L GR N+YN
Sbjct: 245 ISRGK----VYTYGID-QAADIRAKDIQVTARGVSFMASGPWGNHQLNLKLTGRFNVYNA 299
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA G+A+G + +V +E+V V GR EL+D+ Q F V+VDYAHTPD L +L +
Sbjct: 300 LAAYTTGMALGFGSDTVVSALEDVPGVAGRFELLDKGQNFAVVVDYAHTPDGLENILTTA 359
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R++ R+ITV GC G+ DR KRP+M +IA SDV ++TSDNP E+P I+ D++ GV
Sbjct: 360 RQITKGRLITVFGCGGDRDRTKRPIMGEIAARYSDVPVVTSDNPRTEEPQKIIQDVVEGV 419
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ DY L L D RR A+ A+ + +EGD+VV+AGKGHE YQI
Sbjct: 420 NRVI------APEDY---------LVLVD-RREAINKAIELAQEGDVVVIAGKGHEDYQI 463
Query: 361 EGDKKEFFDDREESREAL 378
G K FDDR+E+ +AL
Sbjct: 464 IGTTKYSFDDRKEAAKAL 481
>gi|65321241|ref|ZP_00394200.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
anthracis str. A2012]
Length = 491
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 VEYMR--STAATVVTYGIDTT-SDVMAKDIAMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HG--------------------ANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDXHHFDDREVAKEAI 483
>gi|196038596|ref|ZP_03105904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus NVH0597-99]
gi|196030319|gb|EDX68918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus NVH0597-99]
Length = 491
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 225/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV N+Y + R+ A+ AV + D++++AGKGHET
Sbjct: 423 HGVSG----------NNYEVIID----------RKEAIHHAVTKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|386758238|ref|YP_006231454.1| protein MurE [Bacillus sp. JS]
gi|384931520|gb|AFI28198.1| MurE [Bacillus sp. JS]
Length = 494
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 158/381 (41%), Positives = 223/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ Y GD L TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 128 GKRTGLIGTM-YMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T +EYR+AK+ LFS++ H R V+N DD +
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEAS 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + + T+ ++N ADV ++ T + T G I+ L+G+ N+
Sbjct: 247 AYF--EKVTAAHISTYGIKNN-ADVMAKNINITAQGTSFDLVTNKGTKHITMSLVGQFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAVA IA G P E I +EE+ V GR EL++++Q F VIVDYAHTPD+L +L
Sbjct: 304 YNVLAAVATCIAAGIPFEIITEAVEELRGVRGRFELVNQQQEFPVIVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ R++ ++ VVGC G+ D+ KRP M KIA + +D I TSDNP +EDP IL DM
Sbjct: 364 ETCRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV EN YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 AGV-----------ENAYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 464 YQQIGNETFDFDDAEVAARAI 484
>gi|423483505|ref|ZP_17460195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG6X1-2]
gi|401141056|gb|EJQ48611.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG6X1-2]
Length = 491
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 229/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + ++N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAILNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VASDIMARDIVMTSGGTTFTLVTPYETVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPKAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
ND NG+ + R+ A+R A++ + D++++AGKGHET
Sbjct: 423 ---------------ND-----ANGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|229061520|ref|ZP_04198864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus AH603]
gi|228717754|gb|EEL69404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus AH603]
Length = 491
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 229/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + ++N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAILNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VASDIMARDIVMTSGGTTFTLVTPYETVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT+ + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAIYTSDNPRSEDPKAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
V D Y + + R+ A+R A++ + D++++AGKGHET
Sbjct: 423 NDVN-----------RDNYEVIVD---------RKEAIRSAISKVKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|418033337|ref|ZP_12671814.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. SC-8]
gi|351469485|gb|EHA29661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. SC-8]
Length = 447
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 158/381 (41%), Positives = 223/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ Y GD L TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 81 GKRTGLIGTM-YMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGR 139
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T +EYR+AK+ LFS++ H R V+N DD +
Sbjct: 140 VHGCDYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEAS 199
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + + T+ ++N ADV ++ T + T G I+ L+G+ N+
Sbjct: 200 AYF--EKVTAAHISTYGIKND-ADVMAKNISITAQGTSFDLVTNKGTKHITMSLVGQFNV 256
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAVA IA G P E I +EE+ V GR EL++++Q F VIVDYAHTPD+L +L
Sbjct: 257 YNVLAAVATCIAAGIPFEIITEAVEELHGVRGRFELVNQQQEFPVIVDYAHTPDSLENVL 316
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ R++ ++ VVGC G+ D+ KRP M KIA + +D I TSDNP +EDP IL DM
Sbjct: 317 ETCRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDME 376
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV EN YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 377 AGV-----------ENAYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 416
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 417 YQQIGNETFDFDDAEVAARAI 437
>gi|302391526|ref|YP_003827346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Acetohalobium arabaticum DSM 5501]
gi|302203603|gb|ADL12281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Acetohalobium arabaticum DSM 5501]
Length = 496
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/380 (37%), Positives = 228/380 (60%), Gaps = 16/380 (4%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ + D +S RTTP+A+ + L+A+M+ G VVME SSH L L R
Sbjct: 130 GYKLGLIGTIKNKV-SDQTFDSQRTTPEALDINKLLAQMIDKGVTHVVMEVSSHALDLNR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+++DFD+A+FTN+T+DH+DFH + EY AK KLFS + D ++NIDDP++ F+
Sbjct: 189 VAKIDFDVAIFTNITQDHLDFHDSFSEYLAAKKKLFSSLKDSSEKTAIINIDDPHSDEFL 248
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
N V+T+ +E K A++ +S + + + G +E+ + G N+YN L
Sbjct: 249 EAANS--KVLTYGIE-KDANLKAKDITISPTGVEFGLESTIGEMELDLNITGLFNVYNTL 305
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
+A+ G+++G L++I G+EE+ + GR E+I+E Q FGVIVDYAHTPD+L +L++
Sbjct: 306 SAIGAGLSLGVDLDEIKAGLEEIQGIAGRFEIIEEAQDFGVIVDYAHTPDSLRNILETAH 365
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
+ RII V GC G+ D+ KRP+M ++A + D ++TSDNP +E+P +I+ D+ VG
Sbjct: 366 DFVEGRIIVVFGCGGDRDKDKRPIMGQVAVELGDFAVVTSDNPRSEEPAEIIADI--EVG 423
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
++ +K + DY + + D R A+ + + D+V + GKGHETYQ
Sbjct: 424 IKEKDKIKGEDCDY---------IIIED-RAEAINYGIESAQPDDLVFIVGKGHETYQTF 473
Query: 362 GDKKEFFDDREESREALQYV 381
DK FDDRE +R +L +
Sbjct: 474 KDKTIPFDDREVARRSLAKI 493
>gi|30263916|ref|NP_846293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. Ames]
gi|47529346|ref|YP_020695.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. 'Ames Ancestor']
gi|49186764|ref|YP_030016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. Sterne]
gi|165872264|ref|ZP_02216901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. A0488]
gi|167636591|ref|ZP_02394885.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. A0442]
gi|167641159|ref|ZP_02399414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. A0193]
gi|170688860|ref|ZP_02880063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. A0465]
gi|170709238|ref|ZP_02899659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. A0389]
gi|177655552|ref|ZP_02936962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. A0174]
gi|190565826|ref|ZP_03018745.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. Tsiankovskii-I]
gi|227813176|ref|YP_002813185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. CDC 684]
gi|229602560|ref|YP_002868150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. A0248]
gi|254683375|ref|ZP_05147235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. CNEVA-9066]
gi|254735955|ref|ZP_05193661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. Western North America USA6153]
gi|254743850|ref|ZP_05201533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. Kruger B]
gi|254754375|ref|ZP_05206410.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. Vollum]
gi|254756742|ref|ZP_05208771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. Australia 94]
gi|386737737|ref|YP_006210918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus anthracis str. H9401]
gi|421507456|ref|ZP_15954376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. UR-1]
gi|421639670|ref|ZP_16080261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. BF1]
gi|46576983|sp|Q81WC7.1|MURE_BACAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|30258560|gb|AAP27779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. Ames]
gi|47504494|gb|AAT33170.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. 'Ames Ancestor']
gi|49180691|gb|AAT56067.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. Sterne]
gi|164711940|gb|EDR17480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. A0488]
gi|167510939|gb|EDR86330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. A0193]
gi|167528014|gb|EDR90820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. A0442]
gi|170125845|gb|EDS94751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. A0389]
gi|170667215|gb|EDT17975.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. A0465]
gi|172080081|gb|EDT65178.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. A0174]
gi|190562745|gb|EDV16711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. Tsiankovskii-I]
gi|227006695|gb|ACP16438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. CDC 684]
gi|229266968|gb|ACQ48605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. A0248]
gi|384387589|gb|AFH85250.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus anthracis str. H9401]
gi|401822590|gb|EJT21740.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. UR-1]
gi|403393335|gb|EJY90580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. BF1]
Length = 491
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 VEYMR--STAATVVTYGIDTT-SDVMAKDIAMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HG--------------------ANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|194014718|ref|ZP_03053335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
(UDP-N-acetylmuramyl-tripeptide synthetase)
(Meso-diaminopimelate-adding enzyme)
(UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
ATCC 7061]
gi|194013744|gb|EDW23309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
(UDP-N-acetylmuramyl-tripeptide synthetase)
(Meso-diaminopimelate-adding enzyme)
(UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
ATCC 7061]
Length = 493
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 156/379 (41%), Positives = 227/379 (59%), Gaps = 28/379 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ Y D+ L+ TTP++V +Q +ML + +ME SSH L LGR
Sbjct: 133 KTGLIGTM-YMKVNDDILDVKNTTPESVTLQKTFKQMLDQDVDTAIMEVSSHALHLGRVH 191
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATS 119
D+DIAVFTNLT+DH+D+H T EEY++AK+ LFS++ H K ++N DD ++
Sbjct: 192 GCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLFSQLGSAFHHNKPKHAILNADDEASSY 251
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
F + V+T+A+E +KADV ++ TQ + TP G +++ L+G+ N+YN
Sbjct: 252 F--EKVTAAEVMTYALE-RKADVMAKNIQIMPKGTQFDLVTPIGTKKVTVALVGKFNVYN 308
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
ILAAV+VGI G E IV IEE++ V GR EL++ +Q F VIVDYAHTPD+L +L +
Sbjct: 309 ILAAVSVGIVSGLTFETIVSAIEELEGVKGRFELVNCDQDFPVIVDYAHTPDSLENVLTT 368
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+EL +I V+GC G+ D+ KRP M +IA +D + TSDNP +EDP IL DM G
Sbjct: 369 CKELTEGKIFCVIGCGGDRDKTKRPQMAQIAVKYADEPVFTSDNPRSEDPSAILKDMENG 428
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V + YY N R+ A+ A+A ++GD V++AGKGHETYQ
Sbjct: 429 V-----------PDAYYHSFVN---------RKQAIFFAIANAKKGDTVLIAGKGHETYQ 468
Query: 360 IEGDKKEFFDDREESREAL 378
I D+ FDD + + +A+
Sbjct: 469 IIDDQVYDFDDAKVAIDAI 487
>gi|52141574|ref|YP_085255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus E33L]
gi|51975043|gb|AAU16593.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus E33L]
Length = 491
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 149/381 (39%), Positives = 225/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV N+Y + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HGVSG----------NNYEVIID----------RKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|423522254|ref|ZP_17498727.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HuA4-10]
gi|401176003|gb|EJQ83202.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HuA4-10]
Length = 491
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 229/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + ++N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAILNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VASDIMARDIVMTSGGTTFTLVTPYETVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT+ + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAIYTSDNPRSEDPKAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
ND NG+ + R+ A+R A++ + D++++AGKGHET
Sbjct: 423 ---------------ND-----ANGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++E +
Sbjct: 463 YQIIGKEVHHFDDREVAKEVI 483
>gi|403234895|ref|ZP_10913481.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. 10403023]
Length = 487
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 146/384 (38%), Positives = 228/384 (59%), Gaps = 32/384 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y G+ +E TTP++V++Q KM+ VME SSH + +GR
Sbjct: 127 GQKTGLVGTM-YTKIGERMIEMKNTTPESVVLQKYFHKMVTEKVNTAVMEVSSHAIDIGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK------VVNIDDP 115
DF++AVF+NLT+DH+D+H T EEYR K LFS + R K ++N DDP
Sbjct: 186 VHGCDFNVAVFSNLTQDHLDYHHTIEEYRRVKGLLFSSL--GNRFEKDNPKFAILNNDDP 243
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+ + + ++T+ ++ + AD+ ++ T+ + TP G+ +I L+G
Sbjct: 244 ASEEY--ARSTSATIITYGID-QSADIMASNICMTASGTEFDLITPLGLFKIKMNLVGLF 300
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
++YN+LAA+A I G + +++ +E+V VPGR E++ E Q F VIVDYAHTPD+L
Sbjct: 301 SVYNVLAAIATCIVSGIAISTVIKAVEKVKGVPGRFEIVKEGQNFTVIVDYAHTPDSLEN 360
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +V++ + RII +VGC G+ DR KRP+M +IAT +DV I TSDNP +EDP+ IL +
Sbjct: 361 VLQTVKQFSKGRIIVLVGCGGDRDRSKRPIMAQIATKYADVPIFTSDNPRSEDPIQILKE 420
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
M AGV + ++Y +P+ R A+ A++ E D++++AGKGH
Sbjct: 421 MEAGV-----------QGEFYVTIPD---------REKAIFYAISNAAENDIIIIAGKGH 460
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQI G+K FDDR + A++
Sbjct: 461 ETYQIIGNKTHSFDDRLVAARAIK 484
>gi|16078582|ref|NP_389401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. 168]
gi|221309391|ref|ZP_03591238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. 168]
gi|221313717|ref|ZP_03595522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221318640|ref|ZP_03599934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. JH642]
gi|221322914|ref|ZP_03604208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. SMY]
gi|321315282|ref|YP_004207569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis BSn5]
gi|384175260|ref|YP_005556645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|402775763|ref|YP_006629707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacillus subtilis QB928]
gi|428279112|ref|YP_005560847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. natto BEST195]
gi|452914381|ref|ZP_21963008.1| UDP-N-acetylmuramyl-tripeptide synthetase family protein [Bacillus
subtilis MB73/2]
gi|417328|sp|Q03523.1|MURE_BACSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|40162|emb|CAA78767.1| murE [Bacillus subtilis subsp. subtilis str. 168]
gi|2633889|emb|CAB13391.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. 168]
gi|291484069|dbj|BAI85144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bacillus subtilis subsp. natto BEST195]
gi|320021556|gb|ADV96542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis BSn5]
gi|349594484|gb|AEP90671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|402480946|gb|AFQ57455.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino pimelate
[Bacillus subtilis QB928]
gi|407958925|dbj|BAM52165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Synechocystis sp. PCC 6803]
gi|407964502|dbj|BAM57741.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis BEST7003]
gi|452116801|gb|EME07196.1| UDP-N-acetylmuramyl-tripeptide synthetase family protein [Bacillus
subtilis MB73/2]
Length = 494
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 158/381 (41%), Positives = 223/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ Y GD L TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 128 GKRTGLIGTM-YMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T +EYR+AK+ LFS++ H R V+N DD +
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEAS 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + + T+ ++N ADV ++ T + T G I+ L+G+ N+
Sbjct: 247 AYF--EKVTAAHISTYGIKND-ADVMAKNISITAQGTSFDLVTNKGTKHITMSLVGQFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAVA IA G P E I +EE+ V GR EL++++Q F VIVDYAHTPD+L +L
Sbjct: 304 YNVLAAVATCIAAGIPFEIITEAVEELHGVRGRFELVNQQQEFPVIVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ R++ ++ VVGC G+ D+ KRP M KIA + +D I TSDNP +EDP IL DM
Sbjct: 364 ETCRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV EN YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 AGV-----------ENAYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 464 YQQIGNETFDFDDAEVAARAI 484
>gi|449094212|ref|YP_007426703.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis XF-1]
gi|449028127|gb|AGE63366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis XF-1]
Length = 466
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 158/381 (41%), Positives = 222/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ Y GD L TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 100 GKRTGLIGTM-YMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGR 158
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T +EYR+AK+ LFS++ H R V+N DD +
Sbjct: 159 VHGCDYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEAS 218
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + + T+ ++N ADV ++ T + T G I+ L+G+ N+
Sbjct: 219 AYF--EKVTAAHISTYGIKND-ADVMAKNISITAQGTSFDLVTNKGTKHITMSLVGQFNV 275
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAVA IA G P E I +EE+ V GR EL++++Q F VIVDYAHTPD+L +L
Sbjct: 276 YNVLAAVATCIAAGIPFEIITEAVEELHGVRGRFELVNQQQEFPVIVDYAHTPDSLENVL 335
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ R++ ++ VVGC G+ D+ KRP M KIA +D I TSDNP +EDP IL DM
Sbjct: 336 ETCRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVKLADEPIFTSDNPRSEDPRAILRDME 395
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV EN YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 396 AGV-----------ENAYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 435
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 436 YQQIGNETFDFDDAEVAARAI 456
>gi|301055405|ref|YP_003793616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus cereus biovar anthracis str. CI]
gi|423550337|ref|ZP_17526664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus ISP3191]
gi|300377574|gb|ADK06478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus cereus biovar anthracis str. CI]
gi|401189953|gb|EJQ97003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus ISP3191]
Length = 491
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 VEYMR--STAATVVTYGIDTT-SDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HG--------------------ANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|196045834|ref|ZP_03113063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus 03BB108]
gi|196023274|gb|EDX61952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus 03BB108]
Length = 491
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HG--------------------ANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|229075671|ref|ZP_04208653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock4-18]
gi|228707447|gb|EEL59638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock4-18]
Length = 491
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 230/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DDP
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRKKYAVLNSDDPVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ ++++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VSSDIMAKDIVMTSGGTTFTLVTPYESVDVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +A + + I TSDNP +EDP+ ILDDM
Sbjct: 363 KTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQAIYTSDNPRSEDPVAILDDM- 421
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
+K + + Y + + R+ A+R A++ + D++++AGKGHET
Sbjct: 422 ----------IKDAKGNNYEVIVD---------RKEAIRYAISKAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|229104477|ref|ZP_04235144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock3-28]
gi|228678919|gb|EEL33129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock3-28]
Length = 491
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 230/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DDP
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRKKYAVLNSDDPVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ ++++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VSSDIMAKDIVMTSGGTTFTLVTPYESVDVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +A + + I TSDNP +EDP+ ILDDM
Sbjct: 363 KTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQAIYTSDNPRSEDPVAILDDM- 421
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
+K + + Y + + R+ A+R A++ + D++++AGKGHET
Sbjct: 422 ----------IKDAKGNNYEVIVD---------RKEAIRYAISKAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|398304272|ref|ZP_10507858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus vallismortis DV1-F-3]
Length = 494
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 220/381 (57%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ Y GD L TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 128 GKRTGLIGTM-YMKIGDETLPVKNTTPESVTLQKTFKKMNDKQVDTAIMEVSSHALSLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T +EYR AK+ LFS++ H + V+N DD +
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHERPKCAVLNADDEAS 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + + T+ ++N ADV ++ T + T G I+ L+G+ N+
Sbjct: 247 AYF--EKVTAAHISTYGIKNN-ADVMAKNITITAQGTSFDLVTNKGTKHITMSLVGQFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAV IA G P E I ++E+ V GR EL++++Q F VIVDYAHTPD+L +L
Sbjct: 304 YNVLAAVTTCIAAGIPFETITEAVQELHGVRGRFELVNQQQEFPVIVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ +++ ++ VVGC G+ D+ KRP M KIA + SD I TSDNP +EDP IL DM
Sbjct: 364 KTCKDMTEGKLFVVVGCGGDRDKSKRPKMAKIAVELSDEPIFTSDNPRSEDPRAILRDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV EN YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 AGV-----------ENAYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G+K FDD E + A+
Sbjct: 464 YQQIGNKTFDFDDAEVAARAI 484
>gi|323701283|ref|ZP_08112958.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
nigrificans DSM 574]
gi|323533885|gb|EGB23749.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
nigrificans DSM 574]
Length = 492
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 159/381 (41%), Positives = 225/381 (59%), Gaps = 29/381 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+GL+ G++ ++ I G+ L TTP+++ + LMA+M+ + V ME SSH LAL
Sbjct: 133 VGLKPGVVGTIHNLI-GEKALPVTNTTPESLDLHKLMAEMVREDVQGVAMEVSSHALALN 191
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + V +D+AVFTN+T+DH+DFHG E+Y AKAKLF + + V+N DD A
Sbjct: 192 RVAGVKYDVAVFTNITQDHLDFHGNMEDYLAAKAKLFEKDI----KYAVINADDQAAEQL 247
Query: 121 --IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
I++G V T+ +EN ADV +++ VN+P G + L GR N+Y
Sbjct: 248 FKISRGK----VYTYGIENN-ADVRAKDIQVTARGVSFTVNSPWGEQRLELKLTGRFNVY 302
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N LAA VG+ +G D+ +E V V GR EL+D+ Q F V+VDYAHTPD L +L
Sbjct: 303 NSLAAYTVGMVLGYNGMDVKAALEGVTGVAGRFELVDQGQDFAVVVDYAHTPDGLENILT 362
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ R++ R+ITV GC G+ DR KRP+M +IA SD+ ++TSDNP EDP I++D+L
Sbjct: 363 TARQITKGRLITVFGCGGDRDRTKRPIMGEIAARYSDLPVVTSDNPRTEDPQKIIEDILV 422
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ G++ G L + D RR A+ A+ + E GD+VV+AGKGHE Y
Sbjct: 423 GL---------QGKDP-------GSYLVIAD-RREAINRAINLAEPGDVVVIAGKGHEDY 465
Query: 359 QIEGDKKEFFDDREESREALQ 379
QI G K FDDRE + EAL+
Sbjct: 466 QIIGTTKYHFDDREVAAEALK 486
>gi|49481794|ref|YP_037976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|196035932|ref|ZP_03103334.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus W]
gi|218905045|ref|YP_002452879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus AH820]
gi|228916552|ref|ZP_04080118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228928963|ref|ZP_04091995.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228947634|ref|ZP_04109924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229123428|ref|ZP_04252632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus 95/8201]
gi|254721449|ref|ZP_05183238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. A1055]
gi|49333350|gb|AAT63996.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|195991581|gb|EDX55547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus W]
gi|218535272|gb|ACK87670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus AH820]
gi|228660204|gb|EEL15840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus 95/8201]
gi|228812154|gb|EEM58485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228830770|gb|EEM76375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228843131|gb|EEM88213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
Length = 491
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 VEYMR--STAATVVTYGIDTT-SDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HG--------------------ANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|118479134|ref|YP_896285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis str. Al Hakam]
gi|376267811|ref|YP_005120523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus F837/76]
gi|118418359|gb|ABK86778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis str. Al Hakam]
gi|364513611|gb|AEW57010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bacillus cereus F837/76]
Length = 491
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G D Y + + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HG-----------ANGDNYEVIID---------RKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|228935230|ref|ZP_04098056.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228824395|gb|EEM70201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
Length = 491
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 VEYMR--STAATVVTYGIDTT-SDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HG--------------------ANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|229186155|ref|ZP_04313324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus BGSC 6E1]
gi|228597331|gb|EEK54982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus BGSC 6E1]
Length = 491
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDIMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HG--------------------ANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|218233439|ref|YP_002368714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus B4264]
gi|218161396|gb|ACK61388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus B4264]
Length = 491
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 227/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G G+N Y + + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 HGAS---------GKN--YEMIID---------RKEAIHHAIAKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|228909740|ref|ZP_04073563.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis IBL 200]
gi|228850029|gb|EEM94860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis IBL 200]
Length = 482
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 226/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 118 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 176
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 177 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 236
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ + +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 237 EEYMR--STAATVVTYGIDTR-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 293
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 294 YNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 353
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 354 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 413
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N + + + R+ A+ A+A + D++++AGKGHET
Sbjct: 414 QGASG------------------NNYEVIID--RKEAIHHAIANVKADDIIIIAGKGHET 453
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 454 YQIIGKEVHHFDDREVAKEAI 474
>gi|430756000|ref|YP_007209780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. BSP1]
gi|430020520|gb|AGA21126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. BSP1]
Length = 494
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/381 (41%), Positives = 223/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ Y GD L TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 128 GKRTGLIGTM-YMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T +EYR+AK+ LFS++ H R V+N DD +
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEAS 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + + T+ ++N ADV ++ T + T G I+ L+G+ N+
Sbjct: 247 AYF--EKVTAAHISTYGIKND-ADVMAKNISITAQGTSFDLVTNKGTKHITMSLVGQFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAVA IA G P E I +EE+ V GR EL++++Q F VIVDYAHTPD+L +L
Sbjct: 304 YNVLAAVATCIAAGIPFEIITEAVEELHGVRGRFELVNQQQEFPVIVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ R++ ++ VVGC G+ D+ KRP M +IA + +D I TSDNP +EDP IL DM
Sbjct: 364 ETCRDMTEGKLFVVVGCGGDRDKTKRPKMAQIAVELADEPIFTSDNPRSEDPRAILRDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV EN YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 AGV-----------ENAYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 464 YQQIGNETFDFDDAEVAARAI 484
>gi|138894650|ref|YP_001125103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacillus thermodenitrificans NG80-2]
gi|166224776|sp|A4IM04.1|MURE_GEOTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|134266163|gb|ABO66358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Geobacillus thermodenitrificans NG80-2]
Length = 489
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/382 (41%), Positives = 226/382 (59%), Gaps = 26/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V I GD + TTP+++++Q +M+ G E V ME SSH L GR
Sbjct: 127 GKKIGLIGTVGTKI-GDRSYPAVNTTPESLVLQRTFKQMVDEGVEFVTMEVSSHALHQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+HGT EEYRNAK LF+++ + R+ V+N DDP +
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P++T+ ++ +K+DV + E++ + TPHG + I + L+G N+
Sbjct: 246 QYY--KHMTAAPIITYGIK-EKSDVMAEQIEMTPGGMAFQLCTPHGTMAIETKLVGLFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A +A G L I + V VPGR E +DE Q F VIVDYAHTPD++ L
Sbjct: 303 YNLLAATAACLASGFSLATIAEALANVSPVPGRFETVDEGQNFTVIVDYAHTPDSVENAL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+VR+ A R + V+GC G+ DR KRPLM + A +DV + TSDNP +EDP IL DM
Sbjct: 363 KTVRQFAKRNVYVVIGCGGDRDRTKRPLMAQAAVRYADVAVFTSDNPRSEDPRQILRDME 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV + Y +P+ R A+R A+ +EGD+V++AGKGHET
Sbjct: 423 AGVS---------AGDGTYVTIPD---------REEAIRYAIGQAQEGDVVLIAGKGHET 464
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI GD FDDR +R A++
Sbjct: 465 YQIIGDDVIDFDDRAVARAAVK 486
>gi|423558523|ref|ZP_17534825.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus MC67]
gi|401191791|gb|EJQ98813.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus MC67]
Length = 491
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 228/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + ++N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAILNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VASDIMARDIVMTSGGTTFTLVTPYETVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT+ + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAIYTSDNPRSEDPNAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
V N + + + R+ A+R ++ + D++++AGKGHET
Sbjct: 423 NDVKG------------------NNYEVIVD--RKEAIRSTISKVKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|225865896|ref|YP_002751274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus 03BB102]
gi|225787861|gb|ACO28078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus 03BB102]
Length = 491
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 223/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ + +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGI-GTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G D Y + + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HG-----------ANGDNYEVIID---------RKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|333924514|ref|YP_004498094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333750075|gb|AEF95182.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 492
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/381 (41%), Positives = 224/381 (58%), Gaps = 29/381 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+GL+ G++ ++ I G+ L TTP+++ + LMA+M+ + V ME SSH LAL
Sbjct: 133 VGLKPGVVGTIHNLI-GEKALPVTNTTPESLDLHKLMAEMVREDVQGVAMEVSSHALALN 191
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + V +D+AVFTN+T+DH+DFHG E+Y AKAKLF + + V+N DD A
Sbjct: 192 RVAGVKYDVAVFTNITQDHLDFHGNMEDYLAAKAKLFEKDI----KYAVINADDQAAEQL 247
Query: 121 --IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
I++G V T+ +EN ADV +++ VN P G + L GR N+Y
Sbjct: 248 FKISRGK----VYTYGIENN-ADVRAKDIQVTARGVSFTVNGPWGEQRLELKLTGRFNVY 302
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N LAA VG+ +G D+ +E V V GR EL+D+ Q F V+VDYAHTPD L +L
Sbjct: 303 NSLAAYTVGMVLGYNGMDVKAALEGVTGVAGRFELVDQGQDFAVVVDYAHTPDGLENILT 362
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ R++ R+ITV GC G+ DR KRP+M +IA SD+ ++TSDNP EDP I++D+L
Sbjct: 363 TARQITKGRLITVFGCGGDRDRTKRPIMGEIAARYSDLPVVTSDNPRTEDPQKIIEDILV 422
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ G++ G L + D RR A+ A+ + E GD+VV+AGKGHE Y
Sbjct: 423 GL---------QGKDP-------GSYLVIAD-RREAINRAINLAEPGDVVVIAGKGHEDY 465
Query: 359 QIEGDKKEFFDDREESREALQ 379
QI G K FDDRE + EAL+
Sbjct: 466 QIIGTTKYHFDDREVAAEALK 486
>gi|206971010|ref|ZP_03231961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus AH1134]
gi|228954191|ref|ZP_04116219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|229071414|ref|ZP_04204636.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus F65185]
gi|365159306|ref|ZP_09355487.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412282|ref|ZP_17389402.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG3O-2]
gi|423426049|ref|ZP_17403080.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG3X2-2]
gi|423431933|ref|ZP_17408937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG4O-1]
gi|423503409|ref|ZP_17480001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HD73]
gi|449090856|ref|YP_007423297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus thuringiensis serovar kurstaki str. HD73]
gi|206733782|gb|EDZ50953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus AH1134]
gi|228711705|gb|EEL63658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus F65185]
gi|228805511|gb|EEM52102.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|363625304|gb|EHL76345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104350|gb|EJQ12327.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG3O-2]
gi|401110796|gb|EJQ18695.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG3X2-2]
gi|401116689|gb|EJQ24527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG4O-1]
gi|402459630|gb|EJV91367.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HD73]
gi|449024613|gb|AGE79776.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 491
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 227/382 (59%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G G+N Y + + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HGAS---------GKN--YEVIID---------RKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G + FDDRE ++EA++
Sbjct: 463 YQIIGKEVHHFDDREVAKEAIK 484
>gi|423437367|ref|ZP_17414348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG4X12-1]
gi|401120522|gb|EJQ28318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG4X12-1]
Length = 491
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 227/382 (59%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTAFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G G+N Y + + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HGAS---------GKN--YEVIID---------RKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G + FDDRE ++EA++
Sbjct: 463 YQIIGKEVHHFDDREVAKEAIK 484
>gi|423661246|ref|ZP_17636415.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VDM022]
gi|401301287|gb|EJS06876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VDM022]
Length = 491
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 228/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + ++N DD A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAILNSDDSVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VASDIMARDIVMTSGGTTFTLVTPYETVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPKAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
ND NG+ + R+ A+R A++ + D++++AGKGHET
Sbjct: 423 ---------------ND-----ANGNNYEVVVDRKEAIRSAISKVKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|302036127|ref|YP_003796449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate
ligase [Candidatus Nitrospira defluvii]
gi|300604191|emb|CBK40523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate
ligase [Candidatus Nitrospira defluvii]
Length = 502
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 161/381 (42%), Positives = 219/381 (57%), Gaps = 25/381 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ +V+Y + G + + TTP A+ +Q L A+M + VVME SSH LAL R +
Sbjct: 134 QVGLIGTVAYLV-GKESIPASHTTPGALELQKLFARMREARLDTVVMEVSSHALALDRTA 192
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPNAT 118
+FD+AVFTNLT+DH+DFH E Y AK KLF+ + V P R R ++N DDP
Sbjct: 193 GSEFDVAVFTNLTQDHLDFHLDMERYFQAKLKLFAELGRAGAVKP-RKRAIINADDPWGA 251
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
+ VPV T+ + +++AD++ LS T + +P G I S L+G HN+
Sbjct: 252 RI--RSACTVPVWTYGL-HQQADIYADGVRLSPAGTSFTLRSPAGTCPIKSRLVGEHNVS 308
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N+LAA+ V + G L+ + +E V VPGR EL++ Q F V+VDYAHT DAL RLL
Sbjct: 309 NLLAAIGVVLHEGLTLDQVRSAVETVTNVPGRFELVEAGQDFSVVVDYAHTEDALVRLLT 368
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ + L RIITV GC G+ DR KRP M + A SDV ILTSDNP EDP IL ++
Sbjct: 369 AAQALRTGRIITVFGCGGDRDRTKRPKMGRAAVKYSDVVILTSDNPRTEDPAAILREVEV 428
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGH-RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV + E GH R + RR A+ A+ + GDMV++AGKGHE
Sbjct: 429 GVKEALAE--------------RGHVRYRMVADRREAIEAAIREAKPGDMVLIAGKGHED 474
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G K FDDRE +R+ +
Sbjct: 475 YQIVGTTKHHFDDREVARDTI 495
>gi|229111384|ref|ZP_04240937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock1-15]
gi|229152112|ref|ZP_04280307.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus m1550]
gi|423585676|ref|ZP_17561763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD045]
gi|423649776|ref|ZP_17625346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD169]
gi|228631461|gb|EEK88095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus m1550]
gi|228672160|gb|EEL27451.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock1-15]
gi|401233022|gb|EJR39518.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD045]
gi|401283056|gb|EJR88953.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD169]
Length = 491
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 227/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALNLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+++ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G G+N Y + + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 HGAS---------GKN--YEMIID---------RKEAIHHAIAKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|228922667|ref|ZP_04085967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|423635313|ref|ZP_17610966.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD156]
gi|228837096|gb|EEM82437.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|401278064|gb|EJR84000.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD156]
Length = 491
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 225/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAVILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N+Y + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 HGARG----------NNYEVIID----------RKEAIHHAIAKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|30022003|ref|NP_833634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus ATCC 14579]
gi|229047599|ref|ZP_04193189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus AH676]
gi|229129192|ref|ZP_04258165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus BDRD-Cer4]
gi|229146486|ref|ZP_04274857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus BDRD-ST24]
gi|296504408|ref|YP_003666108.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus thuringiensis BMB171]
gi|423641007|ref|ZP_17616625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD166]
gi|46576978|sp|Q819Q0.1|MURE_BACCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|29897559|gb|AAP10835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus ATCC 14579]
gi|228637119|gb|EEK93578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus BDRD-ST24]
gi|228654429|gb|EEL10294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus BDRD-Cer4]
gi|228723846|gb|EEL75201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus AH676]
gi|296325460|gb|ADH08388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus thuringiensis BMB171]
gi|401280068|gb|EJR85990.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD166]
Length = 491
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 227/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+++ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G G+N Y + + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 HGAS---------GKN--YEMIID---------RKEAIHHAIAKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|229092962|ref|ZP_04224094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock3-42]
gi|228690416|gb|EEL44201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock3-42]
Length = 491
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 223/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE + I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETTIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HG--------------------ANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|228902420|ref|ZP_04066574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis IBL 4222]
gi|228857164|gb|EEN01670.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis IBL 4222]
Length = 482
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 225/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 118 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 176
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 177 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 236
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 237 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 293
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 294 YNVLAATAAGLVSGVKLQTIIAVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 353
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 354 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 413
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N + + + R+ A+ A+A + D++++AGKGHET
Sbjct: 414 QGASG------------------NNYEVIID--RKEAIHHAIANVKADDIIIIAGKGHET 453
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 454 YQIIGKEVHHFDDREVAKEAI 474
>gi|229086479|ref|ZP_04218651.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock3-44]
gi|228696796|gb|EEL49609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock3-44]
Length = 491
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 227/382 (59%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +M+ + VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFHRMIEENVNSAVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHDREKYAVLNNDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + V+T+ ++ +D+ ++ T + TP+ + I+ L+G+ N+
Sbjct: 246 EEYMR--STAATVITYGIDTH-SDIMAKDIVMTSGGTTFTLVTPNESINITMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAVA G+ G PL+ IV ++++ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAAVAAGLVSGVPLQTIVDVVKKLTGVPGRFEVVDGGQDYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + ILTSDNP +EDP ILDDML
Sbjct: 363 ITAKQFAKGNVYCIVGCGGDRDRTKRPIMAAVATKYATHAILTSDNPRSEDPKLILDDML 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N + + + R+ A+ A++ + D++++AGKGHET
Sbjct: 423 TGAKG------------------NNYEVIID--RKEAIFHAISEAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREIAKEAIS 484
>gi|228987059|ref|ZP_04147184.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|228772653|gb|EEM21094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
Length = 491
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/381 (39%), Positives = 225/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDVVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +E+P ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEEPGAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+A + D+V++AGKGHET
Sbjct: 423 HG--------------------ANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|229157493|ref|ZP_04285570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus ATCC 4342]
gi|228625943|gb|EEK82693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus ATCC 4342]
Length = 491
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/381 (39%), Positives = 225/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDVVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +E+P ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEEPGAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+A + D+V++AGKGHET
Sbjct: 423 HG--------------------ANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|423615822|ref|ZP_17591656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD115]
gi|401260359|gb|EJR66532.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD115]
Length = 491
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 230/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRKKYAVLNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ ++++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VSSDIMAKDIVMTSGGTTFTLVTPYESVDVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAAAAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +A + + I TSDNP +EDP+ ILDDM+
Sbjct: 363 KTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQAIYTSDNPRSEDPVAILDDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N + + + R+ A+R A++ + D++++AGKGHET
Sbjct: 423 KGAKG------------------NNYEVIID--RKEAIRYAISKAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|407977700|ref|ZP_11158537.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. HYC-10]
gi|407415953|gb|EKF37534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. HYC-10]
Length = 491
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 226/379 (59%), Gaps = 28/379 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ Y D+ L+ TTP++V +Q +ML + + +ME SSH L +GR
Sbjct: 131 KTGLIGTM-YMKVNDDILDVKNTTPESVTLQKTFKQMLDHDVDTAIMEVSSHALQMGRVH 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATS 119
D+DIAVFTNL++DH+D+H T EEY++AK+ LFS++ +H K ++N DD ++
Sbjct: 190 GCDYDIAVFTNLSQDHLDYHNTMEEYKHAKSLLFSQLGSAFQHDKPKHAILNADDEVSSY 249
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
F + + T+ +E + ADV +++ TQ + TP G ++ L+G+ N+YN
Sbjct: 250 F--EKVTAAEITTYGIE-QDADVMAKNIQINPKGTQFDLITPIGTKNVTVALIGKFNVYN 306
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
ILAAV+VGI G E IV IE+++ V GR EL++ +Q F VI+DYAHTPD+L +L +
Sbjct: 307 ILAAVSVGIVSGLTFETIVSAIEDLEGVKGRFELVNCDQDFPVIIDYAHTPDSLENVLTT 366
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
REL RI V+GC G+ D+ KRP M +IA +D + TSDNP +EDP IL DM G
Sbjct: 367 CRELTEGRIFCVIGCGGDRDKTKRPQMAQIAVKYADEPVFTSDNPRSEDPSAILKDMENG 426
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V YY N R+ A+ A+A ++GD V++AGKGHETYQ
Sbjct: 427 VPEA-----------YYHSFVN---------RKQAIFFAIANAKKGDTVLIAGKGHETYQ 466
Query: 360 IEGDKKEFFDDREESREAL 378
I GD+ FDD + + +A+
Sbjct: 467 IIGDQVYDFDDAKVAMDAI 485
>gi|423561680|ref|ZP_17537956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus MSX-A1]
gi|434377019|ref|YP_006611663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis HD-789]
gi|401201937|gb|EJR08802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus MSX-A1]
gi|401875576|gb|AFQ27743.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis HD-789]
Length = 491
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 225/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLQTIIAVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N+Y + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 QGASG----------NNYEVIID----------RKEAIHHAIANVKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|218899068|ref|YP_002447479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus G9842]
gi|402564741|ref|YP_006607465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis HD-771]
gi|423359049|ref|ZP_17336552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD022]
gi|218545862|gb|ACK98256.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus G9842]
gi|401084921|gb|EJP93167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD022]
gi|401793393|gb|AFQ19432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis HD-771]
Length = 491
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 225/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLQTIIAVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N+Y + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 QGASG----------NNYEVIID----------RKEAIHHAIANVKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|423656775|ref|ZP_17632074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD200]
gi|401290516|gb|EJR96210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD200]
Length = 491
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 226/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+++ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G G N Y + + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 HGAS---------GRN--YEMIID---------RKEAIHHAIAKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|228966868|ref|ZP_04127912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228792967|gb|EEM40525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar sotto str.
T04001]
Length = 482
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 225/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 118 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 176
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 177 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 236
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 237 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 293
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 294 YNVLAATAAGLVSGVKLQTIIAVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 353
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 354 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 413
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N + + + R+ A+ A+A + D++++AGKGHET
Sbjct: 414 QGASG------------------NNYEVIID--RKEAIHHAIANVKADDIIIIAGKGHET 453
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 454 YQIIGKEVHHFDDREVAKEAI 474
>gi|229180190|ref|ZP_04307534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus 172560W]
gi|229192084|ref|ZP_04319053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus ATCC 10876]
gi|228591410|gb|EEK49260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus ATCC 10876]
gi|228603399|gb|EEK60876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus 172560W]
Length = 491
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 226/382 (59%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR----KVVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHQTMEEYKHAKGLLFAQLGNSYNHNGEKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G G+N Y + + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HGAS---------GKN--YEVIID---------RKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G + FDDRE ++EA++
Sbjct: 463 YQIIGKEVHHFDDREVAKEAIK 484
>gi|229081167|ref|ZP_04213677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock4-2]
gi|228702211|gb|EEL54687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus Rock4-2]
Length = 491
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 226/382 (59%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + + L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVMMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G G+N Y + + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HGAS---------GKN--YEVIID---------RKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G + FDDRE ++EA++
Sbjct: 463 YQIIGKEVHHFDDREVAKEAIK 484
>gi|423582124|ref|ZP_17558235.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD014]
gi|401213003|gb|EJR19744.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD014]
Length = 491
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 225/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAVILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N+Y + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 HGARG----------NNYEVIID----------RKEAIHHALAKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|407706372|ref|YP_006829957.1| hypothetical protein MC28_3136 [Bacillus thuringiensis MC28]
gi|407384057|gb|AFU14558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis MC28]
Length = 491
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 230/381 (60%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DDP A
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRKKYAVLNSDDPVA 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ ++++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGID-VSSDIMAKDIVMTSGGTTFTLVTPYESVDVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G L+ I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAAAAAGLVSGVSLQTIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +A + + I TSDNP +EDP+ ILDDM+
Sbjct: 363 KTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQAIYTSDNPRSEDPVAILDDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N + + + R+ A+R A++ + D++++AGKGHET
Sbjct: 423 KGAKG------------------NNYEVIVD--RKEAIRYAISKAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|262316882|emb|CAZ44331.1| putative UDP-N-acetylmuramoylanalyl-D-glutamate-2-6-diaminoligase
[Raphanus sativus]
Length = 137
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 126/137 (91%), Positives = 133/137 (97%)
Query: 266 MTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRL 325
MTKIAT+KSDVT+LTSDNP NEDPLDILDDMLAG+GWTMQEYLK+GE+DYYPPL NGHRL
Sbjct: 1 MTKIATEKSDVTMLTSDNPGNEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRL 60
Query: 326 FLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDELH 385
FLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE YQ+EGDKKEF+DDREE REALQYVDELH
Sbjct: 61 FLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQLEGDKKEFYDDREECREALQYVDELH 120
Query: 386 QAGIDTSEFPWRLPESH 402
QAGIDTSEFPWRLPESH
Sbjct: 121 QAGIDTSEFPWRLPESH 137
>gi|294501023|ref|YP_003564723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bacillus megaterium QM B1551]
gi|294350960|gb|ADE71289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bacillus megaterium QM B1551]
Length = 487
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 221/380 (58%), Gaps = 28/380 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I GD + TTP+++ +Q +M+ E +ME SSH L LGR
Sbjct: 129 KTGLIGTIEIRI-GDTSYDVKNTTPESLTLQKTFHQMVEENVEVAMMEVSSHALDLGRVH 187
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATS 119
DFD+AVF+NLT+DH+D+H T E+YR AK LF+++ + H + V+N DD
Sbjct: 188 GCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHNRPKFAVLNADDAATEE 247
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+I N V+T+ + ++ +D+ +++ T + TP + + L+G+ ++YN
Sbjct: 248 YIK--NTAATVITYGI-DRDSDIRATNIQITNSGTTFDLTTPTETVRVEMKLIGKFSVYN 304
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA A + G PL IV I+ ++ V GR E++D EQ F VIVDYAHTPD+L +L +
Sbjct: 305 VLAATASCLVSGIPLSVIVEEIKVLEGVSGRFEVVDAEQDFTVIVDYAHTPDSLENVLKT 364
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
V+E A R I +VGC G+ DR KRP+M +IA + S ILTSDNP +EDPL IL DM G
Sbjct: 365 VKEFAKRNIYVIVGCGGDRDRTKRPIMARIAAEYSTQAILTSDNPRSEDPLAILKDMEEG 424
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ + D Y + + R A+R AV D+VV+AGKGHETYQ
Sbjct: 425 L-----------DTDNYVTIAD---------RAEAIRYAVEAAHADDVVVIAGKGHETYQ 464
Query: 360 IEGDKKEFFDDREESREALQ 379
I G K FDDRE +R+ ++
Sbjct: 465 IIGKKVFDFDDREVARKMIE 484
>gi|228960132|ref|ZP_04121796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|423629009|ref|ZP_17604758.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD154]
gi|228799648|gb|EEM46601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|401268554|gb|EJR74602.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD154]
Length = 491
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 227/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPNESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+++ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G G+N Y + + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 HGAS---------GKN--YEMIID---------RKEAIHHAIAKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|384045123|ref|YP_005493140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus megaterium WSH-002]
gi|345442814|gb|AEN87831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus megaterium WSH-002]
Length = 490
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 221/380 (58%), Gaps = 28/380 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I GD + TTP+++ +Q +M+ E +ME SSH L LGR
Sbjct: 132 KTGLIGTIEIRI-GDTSYDVKNTTPESLTLQKTFHQMVEENVEVAMMEVSSHALDLGRVH 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATS 119
DFD+AVF+NLT+DH+D+H T E+YR AK LF+++ + H + V+N DD
Sbjct: 191 GCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHNRPKFAVLNADDAATEE 250
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+I N V+T+ + ++ +D+ +++ T + TP + + L+G+ ++YN
Sbjct: 251 YIK--NTAATVITYGI-DRDSDIRATNIQITNSGTTFDLTTPTETVRVEMKLIGKFSVYN 307
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA A + G PL IV I+ ++ V GR E++D EQ F VIVDYAHTPD+L +L +
Sbjct: 308 VLAATASCLVSGIPLSVIVEEIKVLEGVSGRFEVVDAEQDFTVIVDYAHTPDSLENVLKT 367
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
V+E A R I +VGC G+ DR KRP+M +IA + S ILTSDNP +EDPL IL DM G
Sbjct: 368 VKEFAKRNIYVIVGCGGDRDRTKRPIMARIAAEYSTQAILTSDNPRSEDPLAILKDMEEG 427
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ + D Y + + R A+R AV D++V+AGKGHETYQ
Sbjct: 428 L-----------DTDNYVTIAD---------RAEAIRYAVETAHADDVIVIAGKGHETYQ 467
Query: 360 IEGDKKEFFDDREESREALQ 379
I G K FDDRE +R+ ++
Sbjct: 468 IIGKKVFDFDDREVARKMIE 487
>gi|206976777|ref|ZP_03237681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus H3081.97]
gi|217961336|ref|YP_002339904.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus AH187]
gi|229140563|ref|ZP_04269118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus BDRD-ST26]
gi|375285840|ref|YP_005106279.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
[Bacillus cereus NC7401]
gi|423353618|ref|ZP_17331245.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus IS075]
gi|423374288|ref|ZP_17351626.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus AND1407]
gi|423567189|ref|ZP_17543436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus MSX-A12]
gi|206745087|gb|EDZ56490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus H3081.97]
gi|217067561|gb|ACJ81811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus AH187]
gi|228643124|gb|EEK99400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus BDRD-ST26]
gi|358354367|dbj|BAL19539.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus NC7401]
gi|401089431|gb|EJP97602.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus IS075]
gi|401094200|gb|EJQ02282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus AND1407]
gi|401214277|gb|EJR21007.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus MSX-A12]
Length = 491
Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 226/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +E+P ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATHAIYTSDNPRSEEPGAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G + N + + + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 HG------------------AIGNNYEVIID--RKEAIYHAIANAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREIAKEAI 483
>gi|42783008|ref|NP_980255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus ATCC 10987]
gi|229198026|ref|ZP_04324740.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus m1293]
gi|402555961|ref|YP_006597232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus FRI-35]
gi|423574479|ref|ZP_17550598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus MSX-D12]
gi|423604458|ref|ZP_17580351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD102]
gi|42738935|gb|AAS42863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus ATCC 10987]
gi|228585505|gb|EEK43609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus m1293]
gi|401212004|gb|EJR18750.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus MSX-D12]
gi|401245078|gb|EJR51436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus VD102]
gi|401797171|gb|AFQ11030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus FRI-35]
Length = 491
Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 225/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +E+P ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATHAIYTSDNPRSEEPGAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 HG--------------------ANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREIAKEAI 483
>gi|228941003|ref|ZP_04103561.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228973934|ref|ZP_04134509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980523|ref|ZP_04140833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis Bt407]
gi|384187975|ref|YP_005573871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis serovar chinensis CT-43]
gi|410676290|ref|YP_006928661.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Bacillus thuringiensis Bt407]
gi|452200356|ref|YP_007480437.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus thuringiensis serovar thuringiensis str.
IS5056]
gi|228779343|gb|EEM27600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis Bt407]
gi|228785800|gb|EEM33804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818682|gb|EEM64749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326941684|gb|AEA17580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis serovar chinensis CT-43]
gi|409175419|gb|AFV19724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Bacillus thuringiensis Bt407]
gi|452105749|gb|AGG02689.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus thuringiensis serovar thuringiensis str.
IS5056]
Length = 491
Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N+Y + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HGASG----------NNYEVIID----------RKEAIHHAITKVKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|423385416|ref|ZP_17362672.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG1X1-2]
gi|423528226|ref|ZP_17504671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HuB1-1]
gi|401635472|gb|EJS53227.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG1X1-2]
gi|402451889|gb|EJV83708.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus HuB1-1]
Length = 491
Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G N+Y + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HGASG----------NNYEVIID----------RKEAIHHAITKVKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|47565786|ref|ZP_00236825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus G9241]
gi|47557066|gb|EAL15395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus G9241]
Length = 491
Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 225/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD + TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFDVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDVVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +E+P ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEEPGAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+A + D+V++AGKGHET
Sbjct: 423 HG--------------------ANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|443632815|ref|ZP_21116994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443347638|gb|ELS61696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 494
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 219/381 (57%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ Y GD L TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 128 GKSTGLIGTM-YMKIGDETLPVKNTTPESVTLQKTFKKMNDKQVDTAIMEVSSHALSLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR----KVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T +EYR AK+ LFS++ H V+N DD +
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEHPKHAVLNADDEAS 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + + T+ ++N ADV ++ T + T G I+ L+G+ N+
Sbjct: 247 AYF--EKVTAAHISTYGIKNN-ADVMAKNITITAQGTSFDLVTNKGTKHITMSLVGQFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAVA IA G P E I +EE+ V GR EL++++Q F VIVDYAHTPD+L +L
Sbjct: 304 YNVLAAVATCIAAGIPFETITEAVEELHGVRGRFELVNQQQEFPVIVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ R++ ++ VVGC G+ D+ KRP M KIA + +D I TSDNP +EDP IL DM
Sbjct: 364 KTCRDMTVGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV EN+YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 AGV-----------ENEYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G + FDD E + A+
Sbjct: 464 YQQIGSETFDFDDAEVAARAI 484
>gi|451979762|ref|ZP_21928174.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate
ligase [Nitrospina gracilis 3/211]
gi|451763041|emb|CCQ89373.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate
ligase [Nitrospina gracilis 3/211]
Length = 522
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 222/375 (59%), Gaps = 22/375 (5%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
+G++ S++Y + D +P TTP+A+ + ++A+M G + VME SSH LAL R E
Sbjct: 163 SGVIGSINYR-YADTLRPAPMTTPEALEINRMLAEMWAAGVQRCVMEVSSHSLALKRVRE 221
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
+ F AVFTN +RDH+D+H T + Y+ +K LF +D ++V+NIDD ++
Sbjct: 222 LKFAAAVFTNFSRDHLDYHKTLDHYKKSKKSLF---LDCTVGKQVINIDDAVGREIASE- 277
Query: 125 NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAV 184
D +T +E + DV ++ + ++ TP+G EI S LLGRHNIYNIL+A
Sbjct: 278 -LDSVTLTTGLE-QSVDVTAENVKIDPDGVRFILKTPYGDTEIQSTLLGRHNIYNILSAA 335
Query: 185 AVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELA 244
AVG+ L+ I RG+ E+ VPGR E ++ Q F V VDYAHT DAL +L + R ++
Sbjct: 336 AVGLIQNISLDTIARGVRELPRVPGRFEKVEMGQNFIVAVDYAHTDDALLNVLKAARTIS 395
Query: 245 PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTM 304
++I VVGC G+ D KRP+M +IA + +D ++TSDNP EDP I+D +L G+ +
Sbjct: 396 SGKVIVVVGCGGDRDNTKRPVMGRIAAELADFAVITSDNPRTEDPNRIIDQILEGIPDNI 455
Query: 305 QEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDK 364
+ Y LP RR A+R A+ + GD+V++AGKGHE YQI G +
Sbjct: 456 N------PEERYMVLPE---------RRDAIRFAIHKAQSGDLVLIAGKGHEDYQILGTE 500
Query: 365 KEFFDDREESREALQ 379
K FDDREE+ EALQ
Sbjct: 501 KIHFDDREEAAEALQ 515
>gi|222097360|ref|YP_002531417.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus Q1]
gi|384181730|ref|YP_005567492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis serovar finitimus YBT-020]
gi|221241418|gb|ACM14128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus Q1]
gi|324327814|gb|ADY23074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis serovar finitimus YBT-020]
Length = 491
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDVMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +E+P ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATHAIYTSDNPRSEEPGAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 HG--------------------ANGKNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREIAKEAI 483
>gi|255086996|ref|XP_002505421.1| predicted protein [Micromonas sp. RCC299]
gi|226520691|gb|ACO66679.1| predicted protein [Micromonas sp. RCC299]
Length = 462
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/377 (42%), Positives = 217/377 (57%), Gaps = 27/377 (7%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
+R G++ + Y + + + P ++PDA+ Q LMA ML NG A ME SS LA GR
Sbjct: 112 VRCGVIGTTGYSL---DDYDVPTSSPDALQCQQLMAGMLDNGARATAMEVSSRDLAQGRV 168
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122
DFD+AVFTNL DH G RNA A+LF R+ DPER R V+N+D A
Sbjct: 169 DCCDFDVAVFTNLRGDH--HEGDAASCRNATAELFRRLTDPERQRAVINLDVSTAED--- 223
Query: 123 QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILA 182
P F+ ADV + +LSLFET V + TP G + +GL+G N+ N+ A
Sbjct: 224 GEKPFDDAAYFSEAASAADVFVERADLSLFETAVTIRTPVGTFDAITGLVGEVNVSNVAA 283
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRE 242
AVA GIA+ PL+ I G+E ++ PGR EL+DE Q F V+VDYA TP+AL R ++SVR+
Sbjct: 284 AVAAGIALEIPLDVIAEGVEAMEPAPGRMELVDEGQPFSVVVDYAQTPEALKRAIESVRK 343
Query: 243 LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGW 302
+ITV GC G+ D KR M ++A + SD+ +T+DNP EDP ILDD+
Sbjct: 344 TGANNVITVFGCGGDRDASKRAEMGRVADEYSDIVFVTNDNPRTEDPYKILDDI------ 397
Query: 303 TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEG 362
TM+ L N R ++ R A+R A+AM E D V++ GKGHE Y + G
Sbjct: 398 TMK-------------LQNMCRRYVIVDRFYAIRAAIAMAGEDDAVLICGKGHEDYIVVG 444
Query: 363 DKKEFFDDREESREALQ 379
KK +FDDR E+R+ALQ
Sbjct: 445 TKKHWFDDRVEARDALQ 461
>gi|295706372|ref|YP_003599447.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus megaterium DSM 319]
gi|294804031|gb|ADF41097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bacillus megaterium DSM 319]
Length = 490
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 222/380 (58%), Gaps = 28/380 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I GD + TTP+++ +Q +M+ E +ME SSH L LGR
Sbjct: 132 KTGLIGTIEIRI-GDTSYDVKNTTPESLTLQKTFHQMVEENVEVAMMEVSSHALDLGRVH 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATS 119
DFD+AVF+NLT+DH+D+H T E+YR AK LF+++ + H + V+N DD
Sbjct: 191 GCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHNRPKFAVLNADDAATEE 250
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+I N V+T+ ++ +++D+ +++ T + TP + + L+G+ ++YN
Sbjct: 251 YIK--NTAATVITYGID-RESDIRATNIQITNSGTTFDLTTPTETVRVGMKLIGKFSVYN 307
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA A + G PL IV I+ ++ V GR E++D EQ F VIVDYAHTPD+L +L +
Sbjct: 308 VLAATASCLVSGIPLSVIVEEIKVLEGVSGRFEVVDAEQDFTVIVDYAHTPDSLENVLKT 367
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
V+E A R I +VGC G+ DR KRP+M +IA + S ILTSDNP +EDPL IL DM G
Sbjct: 368 VKEFAKRNIYVIVGCGGDRDRTKRPIMARIAAEYSTQAILTSDNPRSEDPLAILKDMEEG 427
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ + D Y + + R A+R AV D++V+AGKGHETYQ
Sbjct: 428 L-----------DTDNYVTIAD---------RAEAIRYAVETVHADDVIVIAGKGHETYQ 467
Query: 360 IEGDKKEFFDDREESREALQ 379
I G K FDDRE +R+ ++
Sbjct: 468 IIGKKVFDFDDREVARKMIE 487
>gi|423401243|ref|ZP_17378416.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG2X1-2]
gi|423478053|ref|ZP_17454768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG6X1-1]
gi|401654233|gb|EJS71776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG2X1-2]
gi|402428215|gb|EJV60312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG6X1-1]
Length = 491
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q KM+ NG ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFLKMVENGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHEREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDIMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE ++ I+++ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +E+P ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEEPGAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 QG--------------------ANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|319649668|ref|ZP_08003824.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2]
gi|317398830|gb|EFV79512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2]
Length = 486
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/382 (37%), Positives = 229/382 (59%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y D E TTP+++ +Q+ KM G ++ VME SSH L GR
Sbjct: 127 GRKTGLIGTM-YTKIADETFEVKNTTPESLTLQSTFKKMADAGVDSAVMEVSSHALDEGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
DF+IAVFTNLT+DH+D+H T +EYR AK LF+++ H + ++N DDP +
Sbjct: 186 IHGCDFNIAVFTNLTQDHLDYHKTMDEYRRAKGLLFAQLGSSYNHEEPKYAILNSDDPAS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + + V+++ ++ ++AD+ + +++ T+ + +P G ++S ++G+ +I
Sbjct: 246 AEY--EKSTAAHVISYGID-QEADLRAINIQMTSGGTEFDLISPFGKHKVSLKMIGKFSI 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LA++ GIA G + I++ EEV V GR E +D Q F VIVDY+HTPD+L L
Sbjct: 303 YNVLASIGAGIASGISISQIIKSAEEVKGVAGRFETVDAGQDFSVIVDYSHTPDSLKNAL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++V++ A +RI T+VGC G+ DR KRPLM +IA S I TSDNP +EDP+ IL DM
Sbjct: 363 ETVKQFALKRIFTIVGCGGDRDRSKRPLMAEIACQYSTDPIFTSDNPRSEDPIQILRDME 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV + + Y + + R+ A+ AV +GD++++AGKGHET
Sbjct: 423 EGV-----------KGESYKTIAD---------RKEAIHYAVKNASKGDVILIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ G++ FDDR ++EA++
Sbjct: 463 YQQVGNQVFDFDDRLVAKEAIE 484
>gi|386008802|ref|YP_005927080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Listeria monocytogenes L99]
gi|386027412|ref|YP_005948188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Listeria monocytogenes M7]
gi|307571612|emb|CAR84791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Listeria monocytogenes L99]
gi|336023993|gb|AEH93130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Listeria monocytogenes M7]
Length = 491
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 223/382 (58%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T +EY NAK+ LF+++ + V+N DD A
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKMAVLNADD--A 243
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
S Q V+TF ++ ++AD +++ + + TP G + ++G ++
Sbjct: 244 ESVRMQTATAAHVITFGIK-QQADFKASNIQITSHGSTFDLTTPVGEFTVKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+E + +E + V GR EL++ QAF VIVDYAHTPD L +L
Sbjct: 303 YNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNAGQAFPVIVDYAHTPDGLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ E A +R+ VVGC G+ D+GKRP M KIA D S I TSDNP +E+P I++DM+
Sbjct: 363 ETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYSSNPIFTSDNPRSENPHAIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV P+ +H+ RR A+R AV E GD++++AGKGHE
Sbjct: 423 QGV-------------------PDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 464 YQLIGDEVIDFDDRVEARIAIE 485
>gi|164687944|ref|ZP_02211972.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM
16795]
gi|164602357|gb|EDQ95822.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium bartlettii DSM 16795]
Length = 485
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/376 (36%), Positives = 217/376 (57%), Gaps = 25/376 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G + ++ Y G + S TTP+++ +Q + +M+ N + VME SSH L L R
Sbjct: 130 KVGSIGTIEIY-DGKKTITSINTTPESLDIQKNLNEMIKNNCKYCVMEVSSHALVLNRID 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
+D++ AVFTNLT+DH+DFH T E Y+NAK KLF + + + NIDD F +
Sbjct: 189 NIDYEAAVFTNLTQDHLDFHKTLENYKNAKEKLFYKT----KSINIFNIDDKVGEEFFNK 244
Query: 124 G-NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILA 182
N D+ T+ +E K+AD +L T+ + ++S+ +LG N+YN LA
Sbjct: 245 SLNRDIKTYTYGVE-KEADFKAANIKLYDDRTEYDLIIDKQKYKVSTPILGNFNVYNTLA 303
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRE 242
A+ I +G ED+++ ++ + +V GR + ++ ++ +IVDYAHTPDAL +L S R
Sbjct: 304 AITTCILLGLSREDVIKRVQNLKSVSGRLDKVENDKNVNIIVDYAHTPDALLNILKSARL 363
Query: 243 LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGW 302
RII V GC G D+ KRP+M KIA +D++I+TSDNP E +DI++D+L G+
Sbjct: 364 FTKNRIILVFGCGGNRDKAKRPIMGKIAQQNADISIITSDNPRFEKEMDIIEDILCGIDK 423
Query: 303 TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEG 362
T+ Y F+ R +++ A+ + E GD++++AGKGHE YQI+G
Sbjct: 424 TLDNY------------------FVVQDREDSIKKAIELYEVGDLIIIAGKGHENYQIKG 465
Query: 363 DKKEFFDDREESREAL 378
DKK FFDD+ +++ L
Sbjct: 466 DKKYFFDDKLIAKKIL 481
>gi|398813803|ref|ZP_10572494.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevibacillus sp. BC25]
gi|398037856|gb|EJL31033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevibacillus sp. BC25]
Length = 472
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 225/378 (59%), Gaps = 23/378 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I GD E TTPDA+ +Q +M T+ ++E SSH L LGR
Sbjct: 109 QTGLIGTIHMRI-GDVTEEVKNTTPDAIDLQRSFRRMCDVNTDYAIIEVSSHALELGRVR 167
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHRKVVNIDDPNATSF 120
+ AVFTNLT+DH+D+H T E YR AK+ LFS++ D +R + V D A+
Sbjct: 168 GCEIHTAVFTNLTQDHLDYHKTMENYRYAKSLLFSQLGNSYDTDRLKTAVLNADDEASEL 227
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
A P V+T+ + ++ ADV + E++ T V + G ++ L+G+ N+YN
Sbjct: 228 YATVTP-ARVITYGI-DQPADVRAKQIEITSKGTSFTVESFAGSARLNLKLMGKFNVYNA 285
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA+AV +A G PLE+I +EEV V GR E +D Q F V+VDY+HTPD+L L +V
Sbjct: 286 LAAIAVTLAEGIPLEEIKASLEEVAGVNGRFEAVDAGQPFAVLVDYSHTPDSLENALMTV 345
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
+E A + +VGC G+ DR KRP+M +IAT +D+T+LTSDNP +E+P ILDDMLAG+
Sbjct: 346 KEFARGNVFCIVGCGGDRDRTKRPIMAQIATKYADLTVLTSDNPRSEEPQAILDDMLAGL 405
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+D Y L + RR A+ AV++ + D++++AGKGHETYQI
Sbjct: 406 SEVA--------SDRYTALAD---------RREAIAHAVSLAKPDDVILIAGKGHETYQI 448
Query: 361 EGDKKEFFDDREESREAL 378
D+ FDDRE +REA+
Sbjct: 449 IKDQVLPFDDREVAREAI 466
>gi|357037246|ref|ZP_09099046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum gibsoniae DSM 7213]
gi|355361411|gb|EHG09166.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum gibsoniae DSM 7213]
Length = 498
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 168/383 (43%), Positives = 224/383 (58%), Gaps = 29/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL+TG++ ++ I GD L TTP++ +Q L+A+M G AV ME SSH L L R
Sbjct: 129 GLKTGLIGTIHNCI-GDRVLPVAHTTPESADLQRLLAEMAGEGVNAVTMEVSSHALVLHR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD----PERHRKVVNIDDPNA 117
E FDIAVFTNLT+DH+DFHG ++Y AKA LF+ + P R VVN DDP A
Sbjct: 188 VGECAFDIAVFTNLTQDHLDFHGDMQQYLEAKALLFAGLGQDDHKPGRKCAVVNADDPAA 247
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSL--FETQVLVNTPHGILEISSGLLGRH 175
I VPV+T+ + + AD+ ++ Q L L++ L G+
Sbjct: 248 ERIIKACR--VPVITYGLYSD-ADIKARDVLVTARGVAFQTLAGGEKVNLQLR--LTGKF 302
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAAVA G+A PL I +E V VPGR EL+D Q F V+VDYAHTPD L
Sbjct: 303 NVYNALAAVAAGVADNIPLSTIKGALERVSGVPGRFELVDRGQPFAVVVDYAHTPDGLEN 362
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L + RE+ R+ITV GC G+ DR KRPLM KIA SD+ ++TSDNP +EDP+ I+ D
Sbjct: 363 VLSTAREITAGRLITVFGCGGDRDRAKRPLMGKIAAGMSDLAVVTSDNPRSEDPMAIIKD 422
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+LAGV + + Y +P+ RR A+R A+ GD+V++AGKGH
Sbjct: 423 ILAGV--------RQVDGARYTVVPD---------RREAIRQAIRDAASGDVVLIAGKGH 465
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E YQI G+++ FDDREE+ AL
Sbjct: 466 EDYQIIGNQRLHFDDREEAFNAL 488
>gi|347750612|ref|YP_004858177.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
gi|347583130|gb|AEO99396.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
Length = 485
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/382 (39%), Positives = 226/382 (59%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ Y GD LE+ TTPD++ +Q +M G VME SSH L GR
Sbjct: 126 GRTTGLIGTM-YMKIGDETLETKNTTPDSLTLQKTFHEMNARGVTDCVMEVSSHSLVEGR 184
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD--PERHRK--VVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T EYR AK+ LFS++ + P+ K ++N DD +
Sbjct: 185 VHGCDYDIAVFTNLTQDHLDYHKTMAEYRRAKSLLFSQLGNSCPQDKPKYAILNADDAAS 244
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + VPV+T+ +++ AD ++ T + TP E+ L G+ ++
Sbjct: 245 KEF--EQVTAVPVITYGIDHD-ADFMAENIDMHARGTTFTLVTPFEKREVRLKLAGKFSV 301
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A G+ G PL+ +++ E ++ V GR EL++ Q F VIVDYAHTPD+L +L
Sbjct: 302 YNMLAAIAAGVVSGVPLDSVIKTAEAMEGVRGRFELVNGGQDFSVIVDYAHTPDSLENVL 361
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++R+ A ++I VVGC G+ D+ KRP+M +IA + I TSDNP +EDP+ IL +M
Sbjct: 362 KTIRQFARKKIFVVVGCGGDRDKTKRPVMAQIACKYAHYPIFTSDNPRSEDPIAILREME 421
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV E + Y +P+ RR A++ A+ E GD+V++AGKGHET
Sbjct: 422 KGV-----------EGEQYECIPD---------RREAIKTAIFRAEAGDVVLIAGKGHET 461
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G++ FDDRE + E ++
Sbjct: 462 YQIIGNEVHHFDDREVALEMIK 483
>gi|373857220|ref|ZP_09599962.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus sp. 1NLA3E]
gi|372452870|gb|EHP26339.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus sp. 1NLA3E]
Length = 497
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/384 (39%), Positives = 229/384 (59%), Gaps = 30/384 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG +TG++ ++ Y G+ E+ TTP+++ +Q KM+ E VME SSH L +G
Sbjct: 133 MGKKTGLIGTM-YTKIGETIFETKNTTPESLTLQKTFKKMVDEQVEVAVMEVSSHALDMG 191
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPN 116
R D++ AVFTNLT+DH+D+H T EEY+ AK LFS++ + + V+N+DD
Sbjct: 192 RVHGCDYNTAVFTNLTQDHLDYHQTMEEYKRAKGLLFSQLGNAFLQQTPKFAVLNVDD-E 250
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
AT + ++T+ +++ AD+ + ++ T+ + TP G ++S L+G+ +
Sbjct: 251 ATKVYTKSTA-AHILTYGIDHN-ADLRAINISMNAGGTKFDLITPMGTEKLSIQLIGKFS 308
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN+LA++ V + G P++ I+ IEEV V GR EL+D Q+F VIVDYAHTPD+L +
Sbjct: 309 VYNVLASIGVALVYGVPIKQIITSIEEVKGVSGRFELVDAGQSFPVIVDYAHTPDSLENV 368
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V++ A +RI VVGC G+ DR KRPLM KIA + I TSDNP +EDP +IL +M
Sbjct: 369 LKTVQQFAKKRIFVVVGCGGDRDRTKRPLMAKIACTYATDPIFTSDNPRSEDPKEILKEM 428
Query: 297 LAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
AGV G T Q + R+ A+ A+ + E GD++++AGKGH
Sbjct: 429 EAGVSGETYQVIVD---------------------RKAAIINAINVAEPGDVILIAGKGH 467
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQ G + FDDR ++EA++
Sbjct: 468 ETYQQIGHEILDFDDRIVAKEAIK 491
>gi|290892185|ref|ZP_06555181.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J2-071]
gi|404408474|ref|YP_006691189.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2376]
gi|290558308|gb|EFD91826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J2-071]
gi|404242623|emb|CBY64023.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2376]
Length = 491
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 149/382 (39%), Positives = 223/382 (58%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T +EY NAK+ LF+++ + V+N DD A
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKMAVLNADD--A 243
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
S Q V+TF ++ ++AD +++ + + TP G + ++G ++
Sbjct: 244 ESVRMQTATAAHVITFGIK-QQADFKASNIQITSHGSTFDLTTPVGEFTVKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+E + +E + V GR EL++ QAF VIVDYAHTPD L +L
Sbjct: 303 YNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNAGQAFPVIVDYAHTPDGLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+
Sbjct: 363 ETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYASNPIFTSDNPRSENPHAIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV P+ +H+ RR A+R AV E GD++++AGKGHE
Sbjct: 423 QGV-------------------PDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 464 YQLIGDEVIDFDDRVEARIAIE 485
>gi|116873468|ref|YP_850249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria welshimeri serovar 6b str. SLCC5334]
gi|116742346|emb|CAK21470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria welshimeri serovar 6b str. SLCC5334]
Length = 491
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 221/382 (57%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML NG VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRNMLMNGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY AK+ LF+++ + V+NIDD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNPKVAVINIDDAES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ Q V+TF ++ K+AD +++ + + TP G + ++G ++
Sbjct: 246 SRM--QTATAAHVITFGIK-KQADFRASNIKIASHGSTFDLRTPVGNFTLKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+ + + +E++ V GR EL+ Q F VIVDY+HTPD+L +L
Sbjct: 303 YNVLAAIATSFALKIPINNAIATVEDIPGVKGRFELVSAGQDFPVIVDYSHTPDSLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E A +R+ +VGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+
Sbjct: 363 QTIDEFAEKRVFVIVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPHAIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV P +H+ RR A+R AV E GD++++AGKGHE
Sbjct: 423 QGV-------------------PESDSYVVHENRRDAIRFAVNEAETGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI GD+ FDDR E+R A++
Sbjct: 464 YQIIGDEVIDFDDRVEARIAIE 485
>gi|16804077|ref|NP_465562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes EGD-e]
gi|386051013|ref|YP_005969004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes FSL R2-561]
gi|404284535|ref|YP_006685432.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2372]
gi|404414116|ref|YP_006699703.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC7179]
gi|405759089|ref|YP_006688365.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2479]
gi|21362688|sp|Q8Y5L9.1|MURE_LISMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|16411508|emb|CAD00116.1| murE [Listeria monocytogenes EGD-e]
gi|346424859|gb|AEO26384.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes FSL R2-561]
gi|404234037|emb|CBY55440.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2372]
gi|404236971|emb|CBY58373.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2479]
gi|404239815|emb|CBY61216.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC7179]
Length = 491
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/380 (38%), Positives = 222/380 (58%), Gaps = 23/380 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP--ERHRKVVNIDDPNATS 119
D+D+AVF NL++DH+D+H T EEY NAK+ LF+++ + + K+ ++ +A S
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDAES 245
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
Q ++TF ++ ++AD +++ + + TP G + ++G ++YN
Sbjct: 246 VRMQKATAAHIITFGIK-QEADFQASNIKITSHGSTFDLGTPVGNFTLKIKMIGNFSVYN 304
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA+A A+ P+E ++ +E + V GR EL+ Q F VIVDYAHTPD L +L++
Sbjct: 305 VLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTPDGLLNVLET 364
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+ G
Sbjct: 365 IDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPRAIIEDMIQG 424
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V P +H+ RR A+R AV E GD++++AGKGHE YQ
Sbjct: 425 V-------------------PESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKGHEDYQ 465
Query: 360 IEGDKKEFFDDREESREALQ 379
+ GD+ FDDR E+R A++
Sbjct: 466 VVGDEVIDFDDRVEARIAIE 485
>gi|254827074|ref|ZP_05231761.1| MurE [Listeria monocytogenes FSL N3-165]
gi|254912596|ref|ZP_05262608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes J2818]
gi|254936923|ref|ZP_05268620.1| MurE [Listeria monocytogenes F6900]
gi|284802485|ref|YP_003414350.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
gi|284995627|ref|YP_003417395.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
gi|386047690|ref|YP_005966022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes J0161]
gi|386054292|ref|YP_005971850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes Finland 1998]
gi|258599457|gb|EEW12782.1| MurE [Listeria monocytogenes FSL N3-165]
gi|258609523|gb|EEW22131.1| MurE [Listeria monocytogenes F6900]
gi|284058047|gb|ADB68988.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
gi|284061094|gb|ADB72033.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
gi|293590588|gb|EFF98922.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes J2818]
gi|345534681|gb|AEO04122.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes J0161]
gi|346646943|gb|AEO39568.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes Finland 1998]
gi|441471839|emb|CCQ21594.1| 6-diaminopimelate ligase [Listeria monocytogenes]
gi|441474975|emb|CCQ24729.1| 6-diaminopimelate ligase [Listeria monocytogenes N53-1]
Length = 491
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/380 (38%), Positives = 222/380 (58%), Gaps = 23/380 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP--ERHRKVVNIDDPNATS 119
D+D+AVF NL++DH+D+H T EEY NAK+ LF+++ + + K+ ++ +A S
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDAES 245
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
Q ++TF ++ ++AD +++ + + TP G + ++G ++YN
Sbjct: 246 VRMQKATAAHIITFGIK-QEADFQASNIKITSHGSTFDLGTPVGNFTLKIKMIGNFSVYN 304
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA+A A+ P+E ++ +E + V GR EL+ Q F VIVDYAHTPD L +L++
Sbjct: 305 VLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTPDGLLNVLET 364
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+ G
Sbjct: 365 IDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPRAIIEDMIQG 424
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V P +H+ RR A+R AV E GD++++AGKGHE YQ
Sbjct: 425 V-------------------PESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKGHEDYQ 465
Query: 360 IEGDKKEFFDDREESREALQ 379
+ GD+ FDDR E+R A++
Sbjct: 466 VVGDEVIDFDDRVEARIAIE 485
>gi|386044345|ref|YP_005963150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2 [Listeria monocytogenes
10403S]
gi|404411339|ref|YP_006696927.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC5850]
gi|345537579|gb|AEO07019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2 [Listeria monocytogenes
10403S]
gi|404231165|emb|CBY52569.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC5850]
Length = 491
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 147/380 (38%), Positives = 225/380 (59%), Gaps = 23/380 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP--ERHRKVVNIDDPNATS 119
D+D+AVF NL++DH+D+H T EEY NAK+ LF+++ + + K+ ++ +A S
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDAES 245
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
Q ++TF ++ ++AD +++ + + TP G + ++G ++YN
Sbjct: 246 VRMQKATAAHIITFGIK-QEADFQASNIKITSHGSTFDLGTPVGNFTLKIKMIGNFSVYN 304
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA+A A+ P+E ++ +E + V GR EL+ Q F VIVDYAHTPD L +L++
Sbjct: 305 VLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTPDGLLNVLET 364
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+ G
Sbjct: 365 IDEFAKKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPRAIIEDMIQG 424
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V E+D Y +H+ RR A+R AV E GD++++AGKGHE YQ
Sbjct: 425 V----------PESDAY---------VVHENRRDAIRFAVNQAEAGDVILIAGKGHEDYQ 465
Query: 360 IEGDKKEFFDDREESREALQ 379
+ GD+ FDDR E+R A++
Sbjct: 466 VIGDEVIDFDDRVEARIAIE 485
>gi|422810114|ref|ZP_16858525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Listeria monocytogenes FSL J1-208]
gi|378751778|gb|EHY62366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Listeria monocytogenes FSL J1-208]
Length = 491
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 222/382 (58%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T +EY NAK+ LF+++ + V+N DD A
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKMAVLNADD--A 243
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
S Q V+TF ++ ++AD +++ + + TP G + ++G ++
Sbjct: 244 ESVRMQTATAAHVITFGIK-QQADFKASNIQITSHGSTFDLATPVGEYTVKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+E + +E + V GR EL++ QAF VIVDYAHTPD L +L
Sbjct: 303 YNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNAGQAFPVIVDYAHTPDGLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ E A +R+ VVGC G+ D+GKRP M KIA D S I TSDNP +E+P I++DM+
Sbjct: 363 ETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYSTNPIFTSDNPRSENPHAIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV P +H+ RR A+R AV E GD++++AGKGHE
Sbjct: 423 QGV-------------------PESDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 464 YQLIGDEVIDFDDRVEARIAIE 485
>gi|297616976|ref|YP_003702135.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
lipocalidus DSM 12680]
gi|297144813|gb|ADI01570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
lipocalidus DSM 12680]
Length = 493
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 161/379 (42%), Positives = 226/379 (59%), Gaps = 23/379 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLES-PRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+L ++ Y K ES TTP++V ++ + +++ G + VME SSH L LG
Sbjct: 130 GYQVGILGTL--YARWRGKQESMAHTTPESVDLERFIRRVVDEGGDYTVMEVSSHALDLG 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R +DFD AVFTNLT+DH+D+H T ++YR AK KLF R+ + + H V+N DDP+ T F
Sbjct: 188 RVDCLDFDAAVFTNLTQDHLDYHRTMDDYREAKLKLFRRLKNKDGHFAVINRDDPSWTVF 247
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
P VVT+ + ++ A V + + + + P G L +S L G N+ N
Sbjct: 248 -RDATPS-RVVTYGITDEAA-VRATEVRVEPEGSCFTLKWPEGDLRLSLNLSGWFNVSNA 304
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA A + G E I RG+E+V +PGR E + Q F VIVDYAHTPD L +L +
Sbjct: 305 LAAAAFALKEGISPEVIKRGLEKVSGIPGRFETVKCGQDFTVIVDYAHTPDGLENILKTA 364
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R +A +RIITV GC G+ DRGKRPLM KIA + SD +I+TSDNP +EDPL I++D++ GV
Sbjct: 365 RAIAKKRIITVFGCGGDRDRGKRPLMGKIAAECSDFSIITSDNPRSEDPLAIIEDIVTGV 424
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+PN + D RRVA+ A+ M + DMV++AGKGHETYQ+
Sbjct: 425 ----------------KKVPNSRYTVIAD-RRVAIGQAINMAQAEDMVIIAGKGHETYQL 467
Query: 361 EGDKKEFFDDREESREALQ 379
D+ FDDRE ++E ++
Sbjct: 468 LKDEVLPFDDREVAKEFIK 486
>gi|229031546|ref|ZP_04187546.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus AH1271]
gi|228729835|gb|EEL80815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus AH1271]
Length = 491
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 225/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHDREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 PEYMR--STAATVVTYGIDTT-SDIMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE ++ I+++ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +E+P ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEEPGAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 QG--------------------ANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|148265990|ref|YP_001232696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter uraniireducens Rf4]
gi|146399490|gb|ABQ28123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter uraniireducens Rf4]
Length = 506
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 231/387 (59%), Gaps = 21/387 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ +L +V+Y + + +P TTP++V +Q + +++ G + VVME SSH L R
Sbjct: 128 GIPAAVLGTVNYRFR-EKAIPAPNTTPESVDLQRTLRELIDMGAKGVVMEVSSHALQQRR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR----KVVNIDDPNA 117
FD+ VFTNLTRDH+D+H E Y +K +LFS ++ +R + VVNIDDP
Sbjct: 187 VDGCCFDVGVFTNLTRDHLDYHLDMESYFQSKMRLFSELLAADRIKPKRCAVVNIDDPYG 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
I QG PV+++ + A V + S+ ++ TP G + + S LLGR N+
Sbjct: 247 PR-IVQGAA-CPVLSYGISGN-AHVRAERVVFSVAGISCVLVTPQGQINLHSELLGRFNL 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YNILAA A GIA+ PL+ I G+E VPGR E + ++ ++VDYAHT DAL +L
Sbjct: 304 YNILAATAAGIAMELPLDAIHEGLEHHPQVPGRVERVANDRGLTILVDYAHTGDALENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ EL RIITV GC G+ DRGKRP+M +IA SD++I+TSDNP +EDP I+ +
Sbjct: 364 RTLTELKKGRIITVFGCGGDRDRGKRPVMGEIAGRYSDLSIITSDNPRSEDPEKIIAGVR 423
Query: 298 AG-VGWTMQEY----LKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
G V ++EY L++G ++ G+ + RR A+R AVA GD+V++AG
Sbjct: 424 EGIVPLGIREYGSEELRHGFSE------KGYAAV--ESRREAIRLAVAAARPGDIVLLAG 475
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHE YQI G +K FDDREE+ +A +
Sbjct: 476 KGHEDYQIIGSEKHHFDDREEAAQACR 502
>gi|435854483|ref|YP_007315802.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halobacteroides halobius
DSM 5150]
gi|433670894|gb|AGB41709.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halobacteroides halobius
DSM 5150]
Length = 489
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 154/389 (39%), Positives = 220/389 (56%), Gaps = 34/389 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+GL+TG++ ++ + G + + RTTP+++ +Q A+M G VME SSH L LG
Sbjct: 128 LGLKTGLIGTIKNKV-GTSIQGASRTTPESLDIQRFFAQMREEGVTHAVMEVSSHALELG 186
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R E+DFD VFTNL++DH+DFH + E+Y NAK KLF+ P ++N DD A
Sbjct: 187 RVLEIDFDRQVFTNLSQDHLDFHQSLEDYLNAKLKLFTMNDKP----AIINFDDQQADKI 242
Query: 121 IAQGNPDVPV------VTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGR 174
Q ++ V F + K DV + ++L T L + L G+
Sbjct: 243 KEQARGEIISYGLEDEVDFKARDIKIDVKGVNYQLI---------TKQNKLPVKLKLSGK 293
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+YN LAA+A ++G L +I GIE++ VPGR +LID+ Q FGVIVDYAHTPD +
Sbjct: 294 FNVYNSLAAIATVASLGFDLTEIKEGIEDICGVPGRFQLIDQGQDFGVIVDYAHTPDGME 353
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L + E R+I V GC G+ DR KRP+M ++ +D I+TSDNP +EDP+DI+
Sbjct: 354 NVLKTANEFTTGRVIVVFGCGGDRDRKKRPIMGRLGVTLADFAIVTSDNPRSEDPMDIIA 413
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
D++ G+ + K GE+ Y + N R A+ AV M D++++ GKG
Sbjct: 414 DIMPGINELEK---KSGED--YIVIEN---------RGEAINKAVEMANADDIILIIGKG 459
Query: 355 HETYQIEGDKKEFFDDREESREALQYVDE 383
HETYQ GDK FDD E +REAL+Y E
Sbjct: 460 HETYQDLGDKVIDFDDSEVAREALEYRSE 488
>gi|121535924|ref|ZP_01667720.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
carboxydivorans Nor1]
gi|121305495|gb|EAX46441.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
carboxydivorans Nor1]
Length = 496
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 153/382 (40%), Positives = 226/382 (59%), Gaps = 23/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I GD L TTPD V +Q L+A+M+ G + VME SSH LAL R
Sbjct: 131 GYKVGLIGTIHTLI-GDRTLPVKNTTPDVVDLQGLLAEMVAAGMDYAVMEVSSHALALNR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
+ +FDI VFTN+TRDH+DFH T E Y +AKA+LF + P+ + V+N DDP A
Sbjct: 190 TAGCEFDIGVFTNITRDHLDFHITFENYIDAKAELFRLVGRPDNVKTGKSAVINTDDPAA 249
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + +T+ +++ AD+ + + T GI+ ++ + G N+
Sbjct: 250 AHMLREVT--YRAITYGVQDG-ADLTARNINIQADGAKFEAVTTRGIIPLALQITGLFNV 306
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+ V +A G + + +E +VPGR E++D Q F VIVDYAHTPD L +L
Sbjct: 307 YNVLAAIGVALAEGIEPDVVKTALEAFRSVPGRFEIVDAGQPFTVIVDYAHTPDGLENIL 366
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ R+ A RRII V GC G+ DR KRP+M ++A + +DV + TSDNP EDP+ IL ++
Sbjct: 367 KTARQFAQRRIIAVFGCGGDRDRTKRPIMGRLAAEYADVVVATSDNPRTEDPVSILKEIE 426
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+ +E LK G++ Y + + RR A+ A+++ E D+V++AGKGHET
Sbjct: 427 VGI----REGLKPGKS--YEVIVD---------RRQAIERALSLAEPQDIVIIAGKGHET 471
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI DK FDDRE +RE ++
Sbjct: 472 YQILKDKTIPFDDREVAREIIR 493
>gi|228998696|ref|ZP_04158283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus mycoides Rock3-17]
gi|228761164|gb|EEM10123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus mycoides Rock3-17]
Length = 491
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 143/381 (37%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +M+ + VME SSH L+LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFRRMVEQNVNSAVMEVSSHALSLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DDP
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAVLNSDDPVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + V+T+ ++ +D+ ++ T + TP + I+ L+G+ N+
Sbjct: 246 EEYMR--STAATVITYGIDTH-SDIMAKDIVMTSGGTTFTLVTPSESVNITMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A + G L+ I+ + + VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGRFEVVDGGQDYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT+ + ILTSDNP +EDP ILDDML
Sbjct: 363 TTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATHAILTSDNPRSEDPQAILDDML 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AG + + Y + + R+ A+ V+ + D++++AGKGHET
Sbjct: 423 AG-----------AKGNNYEVIVD---------RKEAIFYGVSEAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREIAKEAI 483
>gi|229162850|ref|ZP_04290807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus R309803]
gi|228620732|gb|EEK77601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus R309803]
Length = 491
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 143/381 (37%), Positives = 225/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDIMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE ++ I+++ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETVIDVIKKLAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +E+P ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEEPGTILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A++ + D++++AGKGHET
Sbjct: 423 QG--------------------ANGNNYEVIIDRKEAIYHAISNAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|229174581|ref|ZP_04302111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus MM3]
gi|228608886|gb|EEK66178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus cereus MM3]
Length = 491
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q KM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFLKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHDREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDIMAKDIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE ++ I+++ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +E+P ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEEPGAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 QG--------------------ANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|373454598|ref|ZP_09546464.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dialister
succinatiphilus YIT 11850]
gi|371935873|gb|EHO63616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dialister
succinatiphilus YIT 11850]
Length = 503
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 225/385 (58%), Gaps = 22/385 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ I GD ++ + TTPD + + ++A+M E V ME SSH L LGR
Sbjct: 130 GHKTGVIGTIHALI-GDKEIPTHNTTPDVIDLDRILARMAEEKVEYVCMEVSSHSLVLGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
+ +FD AVFTNLT DH+DFH T + Y AKA LF + + +K VN+DDP A
Sbjct: 189 VAGCEFDDAVFTNLTEDHLDFHKTMDNYAKAKAILFHMVSAKGQIKKGKSAWVNMDDPYA 248
Query: 118 TSFIAQGNPDVPVV---TFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGR 174
+ +G D + T++M + +AD++ + + V + + L GR
Sbjct: 249 -HVMEEGVDDRNICALHTYSMIHPEADLYAHDIHFTGKSSSFKVTYEGKDYDFETRLAGR 307
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+YN L AV ++ G P+E IV G+++ +VPGR ELIDE Q F V+VDYAHTPD L
Sbjct: 308 FNVYNTLGAVGACLSEGVPMETIVEGMKDFKSVPGRFELIDEGQPFTVVVDYAHTPDGLE 367
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
++L + E+ RII V GC G+ DR KRP+M +IA +D+ ++TSDNP EDP I+
Sbjct: 368 KILTTAEEITKGRIIVVFGCGGDRDRMKRPIMGRIAARNADIALVTSDNPRTEDPASIVK 427
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
++ AGV +E K + Y + + RR A+ A+ + + GD+V++AGKG
Sbjct: 428 EVAAGV----EEVKKEKPSLSYEVIVD---------RRSAICRAIELAKPGDIVLIAGKG 474
Query: 355 HETYQIEGDKKEFFDDREESREALQ 379
HE YQI DK FDDREE+R+AL+
Sbjct: 475 HENYQILKDKTIHFDDREEARKALK 499
>gi|228992650|ref|ZP_04152576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus pseudomycoides DSM 12442]
gi|229006198|ref|ZP_04163884.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus mycoides Rock1-4]
gi|228755039|gb|EEM04398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus mycoides Rock1-4]
gi|228766982|gb|EEM15619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Bacillus pseudomycoides DSM 12442]
Length = 491
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/381 (37%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +M+ + VME SSH L+LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFRRMVEQNVNSAVMEVSSHALSLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DDP
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAVLNSDDPVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + V+T+ ++ +D+ ++ T + TP + I+ L+G+ N+
Sbjct: 246 EEYMR--STAATVITYGIDTH-SDIMAKDIVMTSGGTTFTLVTPSESVNITMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A + G L+ I+ + + VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGRFEVVDGGQDYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT+ + ILTSDNP +EDP ILDDML
Sbjct: 363 TTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATHAILTSDNPRSEDPQAILDDML 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AG + + Y + + R+ A+ V+ + D++++AGKGHET
Sbjct: 423 AG-----------AKGNNYEVIVD---------RKEAIFHGVSEAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREIAKEAI 483
>gi|442770731|gb|AGC71438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[uncultured bacterium A1Q1_fos_1070]
Length = 1025
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 150/385 (38%), Positives = 227/385 (58%), Gaps = 12/385 (3%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
LR G++ +V Y G N+ +P TTP A+++ +A+M +G +AV ME SSH LALGR
Sbjct: 137 LRPGLIGTVLYRGPGVNR-SAPFTTPTALLLHRTLAEMAEHGAKAVTMEVSSHALALGRL 195
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH--RKVVNIDDPNATSF 120
V F +A FTNLT+DH+D HGT ++Y AK +LF+ + P R V+N+DD
Sbjct: 196 YGVRFRVAAFTNLTQDHLDLHGTMDDYFAAKCRLFTEHLLPAERGGRAVINLDDEWGRKL 255
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
A P + F+++ ADV L + + ++ TP G + + S L GR N+ N+
Sbjct: 256 FAL-LPPAQRIGFSLDG-PADVSVLSEKTGVEGITAVLKTPVGEVTLRSPLTGRFNLSNL 313
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
+V +G+A+G I RG+ + VPGR E + + V+VDYAHTPDAL R+L ++
Sbjct: 314 ALSVGIGVALGLSATQIGRGLSRLSGVPGRLERVPSRRGPTVLVDYAHTPDALYRVLSTL 373
Query: 241 REL---APR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
++L APR R+I V GC G+ D GKRP M K+A +++D+ I+TSDNP +E+P I+D
Sbjct: 374 KQLTAAAPRRSRLIVVFGCGGDRDAGKRPQMGKVAAEQADLVIVTSDNPRSENPQAIIDM 433
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
++ G+ + + +G+ F+ RR A++ A+ D+V++AGKGH
Sbjct: 434 IVDGIEAMQPSLPQLTDRAQLAAATSGY--FIESDRRQAIQSAIVAASPDDIVLLAGKGH 491
Query: 356 ETYQIEGDKKEFFDDREESREALQY 380
E YQ+ G K+ FDDREE++ ALQ
Sbjct: 492 EDYQVIGATKQHFDDREEAQRALQL 516
>gi|329924128|ref|ZP_08279361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Paenibacillus sp. HGF5]
gi|328940860|gb|EGG37170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Paenibacillus sp. HGF5]
Length = 494
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 161/388 (41%), Positives = 224/388 (57%), Gaps = 31/388 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
GL+TG++ ++ +G PRTTP+A+ +Q + M + GTE VME SSH L G
Sbjct: 126 FGLKTGLIGTIQMK-YGGQSFPMPRTTPEALELQRYLNDMANAGTECCVMEVSSHALEQG 184
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRK--VVNIDD 114
R DF A+FTNLT+DH+D+H T EEYR AK FSR+ + E RK V+N DD
Sbjct: 185 RVKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDESARKYAVLNADD 244
Query: 115 PNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGR 174
+ F Q +V +T+ + + ADV ++ T V+T G +IS ++G+
Sbjct: 245 DASAYFAKQTAAEV--ITYGL-GEDADVRASNISITAQGTSFHVDTFRGSADISIRMVGK 301
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+YN +AA+A + G PLEDI +E V V GR E++DE Q + VIVDYAHTPD L
Sbjct: 302 FNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVVDEGQPYAVIVDYAHTPDGLE 361
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L +V E A R+ITV GC G+ DR KRP+M KIA SDV ++TSDNP EDP IL
Sbjct: 362 NVLRTVNEFAEGRVITVFGCGGDRDRTKRPIMGKIAAKYSDVVLVTSDNPRTEDPELILK 421
Query: 295 DMLAGV---GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
D+ AG+ G + Y +L + RR A+ A+ M GD+V++A
Sbjct: 422 DIEAGLVEDGVAAESY----------------KLIVD--RRKAIEKAIEMASPGDVVLIA 463
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHETYQ+ + FDDR +++A++
Sbjct: 464 GKGHETYQLIAGEVLDFDDRIVAKDAIR 491
>gi|258645238|ref|ZP_05732707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Dialister invisus DSM 15470]
gi|260402588|gb|EEW96135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Dialister invisus DSM 15470]
Length = 499
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/393 (38%), Positives = 230/393 (58%), Gaps = 37/393 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G +TG++ +V I GD ++ + TTPD + +Q ++ +ML V ME SSH L +G
Sbjct: 129 VGYKTGVIGTVHALI-GDKEIPTHNTTPDVIDLQRILYQMLKENVTHVCMEVSSHSLVMG 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR----KVVNIDDPN 116
R +FD AVFTNLT DH+D+H T + Y AK+ LF + D ++ + +N DDP
Sbjct: 188 RVIGCEFDTAVFTNLTEDHLDYHKTMDNYAKAKSILFKMVSDKDQIKDGKSAWINSDDPY 247
Query: 117 ATSFI-AQGNPD-VPVVTFAMEN----KKADVH----PLKFELSLFETQVLVNTPHGILE 166
A A +PD V T+ K +DVH F++ L E + ++ T
Sbjct: 248 AAVMSNAISDPDFCQVSTYGFNGNPDLKASDVHFSGKSSSFKIQLGEKRYVIKTK----- 302
Query: 167 ISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDY 226
L+GR N+YN++AA+ ++ G ++DI + + +V GR ELI+E Q+F V+VDY
Sbjct: 303 ----LIGRFNVYNVMAAIGAALSEGVDIKDIQAALSDFVSVAGRFELIEEGQSFSVVVDY 358
Query: 227 AHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMN 286
AHTPD L ++L + +E+A R+IT GC G+ D+ KRP+M +IA + SDV ++TSDNP
Sbjct: 359 AHTPDGLEKILTTAKEIAKGRLITCFGCGGDRDKLKRPIMGRIAANYSDVVVITSDNPRT 418
Query: 287 EDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGD 346
EDP +I+ ++ AGV Q+ ++ N Y + + RR A++ A+++ D
Sbjct: 419 EDPEEIIREIAAGV----QDISQHKSNLLYKTVTD---------RRAAIQYALSIAHNQD 465
Query: 347 MVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+V++AGKGHE YQI DK FDDREE R+AL+
Sbjct: 466 IVLIAGKGHEDYQILKDKTVHFDDREEVRKALR 498
>gi|408418667|ref|YP_006760081.1| bifunctional
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-
alanine ligase MurEF [Desulfobacula toluolica Tol2]
gi|405105880|emb|CCK79377.1| MurEF: fusion protein;
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,
6-diaminopimelate ligase and
UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine
ligase [Desulfobacula toluolica Tol2]
Length = 987
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 148/389 (38%), Positives = 223/389 (57%), Gaps = 17/389 (4%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ + D ++P TTPD++ +Q + M G V+ME SSHGL L R
Sbjct: 132 GFSTGVIGTINIR-YNDQTFDTPVTTPDSIDLQKNLYNMKQAGVTHVIMEVSSHGLDLNR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR---KVVNIDDPNAT 118
FD VFTNLT+DH+D+H T + Y + K + F+R + ++NIDDP
Sbjct: 191 VDFCRFDAGVFTNLTQDHLDYHKTIDAYFDCKKRFFTRFLGSNGKNDAPAILNIDDPKGE 250
Query: 119 S-FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
S F + P++ V T KK D+ + + + P G +++ L G+ N+
Sbjct: 251 SLFNSLACPNLAVST----KKKTDIFAQSVKDDIHGLSGTICLPGGSFNLTTSLTGKFNL 306
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
NIL A A+ LE I +G+E AVPGR E I+ + VDYAHTPDAL +L
Sbjct: 307 ENILCAAGAAHALNIKLEQIKKGLENCPAVPGRLEKINTPIDRYIFVDYAHTPDALESIL 366
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++++AP+RIITV GC G+ DR KRPLM IA SD+TI+TSDNP +E+P +I++D+
Sbjct: 367 TTLKQMAPKRIITVFGCGGDRDRSKRPLMGCIACKTSDITIITSDNPRSENPDEIINDIC 426
Query: 298 AGVGWTMQEYLKYGENDY-YPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
G + + K END + P G+ + + R+ A++ AV + + GD++V AGKGHE
Sbjct: 427 EG----LDTFDKLSENDLSFDPFKKGYMVEVD--RKKALKKAVFISKPGDIIVAAGKGHE 480
Query: 357 TYQIEGDKKEFFDDREESR-EALQYVDEL 384
TYQI FDD+EE + A+++ D+
Sbjct: 481 TYQITNTGTLHFDDKEELKNSAIEFADQF 509
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 11/233 (4%)
Query: 47 AVVMEASSHGLALGRCSEVDF-DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPER 105
A+V +H + R S + DIAV TN H++ G+ E AKA++F + +
Sbjct: 682 AIVEMGMNHPGEISRLSRIALPDIAVVTNTAGVHLEGLGSVENVATAKAEIFEGI--RKN 739
Query: 106 HRKVVNIDDPNATSFIAQG--NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHG 163
++ DDP A+ N + V F AD + TQ
Sbjct: 740 ATAILFADDPRRCILEAKARENNAIKTVLFFGSGYDADFQSADIKTLAGSTQFTAKFNDQ 799
Query: 164 ILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVI 223
+ S + N LAA+ G + I +G+ V GR + + +I
Sbjct: 800 KIACSINSPALFMVDNCLAAICAASIAGICRKGIKKGLRAFTPVSGRMNIFRLSDSIHMI 859
Query: 224 VD-YAHTPDALSRLLDSVREL-APRRIITVVG----CAGESDRGKRPLMTKIA 270
D Y P ++++ +++++ + A + I V+G +SDR R + KIA
Sbjct: 860 DDTYNANPASVTQAINTLQRVSAGKNSIAVLGDMLELGTKSDRLHRQIGLKIA 912
>gi|423457901|ref|ZP_17434698.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG5X2-1]
gi|401148285|gb|EJQ55778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus cereus BAG5X2-1]
Length = 491
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 223/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q KM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFLKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHDREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ + T + TP+ + ++ L+G+ N+
Sbjct: 246 AEYMR--STAATVVTYGIDTT-SDIMAKDIVMKSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE ++ I+++ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +E+P ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMANVATKYATHAIYTSDNPRSEEPGAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 QG--------------------ANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>gi|254854025|ref|ZP_05243373.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes FSL R2-503]
gi|404281652|ref|YP_006682550.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2755]
gi|404287463|ref|YP_006694049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|258607417|gb|EEW20025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes FSL R2-503]
gi|404228287|emb|CBY49692.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2755]
gi|404246392|emb|CBY04617.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes serotype 7 str. SLCC2482]
Length = 491
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 222/382 (58%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY NAK+ LF+++ + V+N DD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q V+TF ++ ++AD ++ + + TP G + ++G ++
Sbjct: 246 VRM--QKATAAHVITFGIK-QQADFKASNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+E ++ +E + V GR EL+ Q F VIVDYAHTPD L +L
Sbjct: 303 YNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTPDGLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+
Sbjct: 363 ETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPRAIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV ++ D Y +H+ RR A+R AV E GD++++AGKGHE
Sbjct: 423 QGVPYS----------DSY---------VVHENRRDAIRFAVNEAEAGDIILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 464 YQVIGDEVIDFDDRVEARIAIE 485
>gi|226313428|ref|YP_002773322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Brevibacillus brevis NBRC 100599]
gi|226096376|dbj|BAH44818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Brevibacillus brevis NBRC 100599]
Length = 492
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 223/378 (58%), Gaps = 23/378 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I GD E TTPDA+ +Q +M T+ ++E SSH L LGR
Sbjct: 129 QTGLIGTIHMRI-GDVTEEVKNTTPDAIDLQRSFRRMCDVNTDYAIIEVSSHALELGRVR 187
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHRKVVNIDDPNATSF 120
+ AVFTNLT+DH+D+H T E YR AK+ LFS++ D +R + V D A+
Sbjct: 188 GCEIHTAVFTNLTQDHLDYHKTMENYRYAKSLLFSQLGNGYDTDRLKTAVLNADDEASEL 247
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
A P V+T+ ++ + ADV + E++ T V + G ++ L+G+ N+YN
Sbjct: 248 YATVTP-ARVITYGID-QPADVRAKQIEITSKGTSFTVESFAGSARLNLRLMGKFNVYNA 305
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA+AV +A G PLE I +EEV V GR E +D Q F V+VDY+HTPD+L L +V
Sbjct: 306 LAAIAVTLAEGIPLEAIKASLEEVAGVNGRFEAVDAGQPFAVLVDYSHTPDSLENALMTV 365
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
+E A + +VGC G+ DR KRP+M +IAT +D+T+LTSDNP +E+P ILDDMLAG+
Sbjct: 366 KEFARGNVFCIVGCGGDRDRTKRPIMAQIATKYADLTVLTSDNPRSEEPQAILDDMLAGL 425
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
D Y L + RR A+ AV++ + D++++AGKGHETYQI
Sbjct: 426 SEVAP--------DRYTALTD---------RREAIAHAVSLAKPDDVILIAGKGHETYQI 468
Query: 361 EGDKKEFFDDREESREAL 378
D+ FDDRE +REA+
Sbjct: 469 IKDQVLPFDDREVAREAI 486
>gi|300765473|ref|ZP_07075454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Listeria monocytogenes FSL N1-017]
gi|300513784|gb|EFK40850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Listeria monocytogenes FSL N1-017]
Length = 491
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 222/382 (58%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY NAK+ LF+++ + V+N DD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q V+TF ++ ++AD ++ + + TP G + ++G ++
Sbjct: 246 VRM--QKATAAHVITFGIK-QQADFKASNIRITSHGSAFDLRTPIGNFTLKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+E ++ +E + V GR EL+ Q F VIVDYAHTPD L +L
Sbjct: 303 YNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTPDGLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+
Sbjct: 363 ETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPRAIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV ++ D Y +H+ RR A+R AV E GD++++AGKGHE
Sbjct: 423 QGVPYS----------DSY---------VVHENRRDAIRFAVNEAEAGDIILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 464 YQVIGDEVIDFDDRVEARIAIE 485
>gi|47093590|ref|ZP_00231348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes str. 4b H7858]
gi|226224644|ref|YP_002758751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|254826206|ref|ZP_05231207.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J1-194]
gi|254933466|ref|ZP_05266825.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes HPB2262]
gi|254993141|ref|ZP_05275331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J2-064]
gi|386732781|ref|YP_006206277.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes 07PF0776]
gi|405750393|ref|YP_006673859.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes ATCC 19117]
gi|405756210|ref|YP_006679674.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2540]
gi|406704826|ref|YP_006755180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes L312]
gi|417315692|ref|ZP_12102365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes J1816]
gi|47018014|gb|EAL08789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes str. 4b H7858]
gi|225877106|emb|CAS05818.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
ligase [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|293585028|gb|EFF97060.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes HPB2262]
gi|293595447|gb|EFG03208.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J1-194]
gi|328466072|gb|EGF37245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes J1816]
gi|384391539|gb|AFH80609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes 07PF0776]
gi|404219593|emb|CBY70957.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes ATCC 19117]
gi|404225410|emb|CBY76772.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2540]
gi|406361856|emb|CBY68129.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes L312]
Length = 491
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 222/382 (58%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY NAK+ LF+++ + V+N DD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q V+TF ++ ++AD ++ + + TP G + ++G ++
Sbjct: 246 VRM--QKATAAHVITFGIK-QQADFKASNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+E ++ +E + V GR EL+ Q F VIVDYAHTPD L +L
Sbjct: 303 YNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTPDGLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+
Sbjct: 363 ETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPRAIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV ++ D Y +H+ RR A+R AV E GD++++AGKGHE
Sbjct: 423 QGVPYS----------DSY---------VVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 464 YQVIGDEVIDFDDRVEARIAIE 485
>gi|311068038|ref|YP_003972961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus atrophaeus 1942]
gi|419823983|ref|ZP_14347515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus atrophaeus C89]
gi|310868555|gb|ADP32030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus atrophaeus 1942]
gi|388471882|gb|EIM08673.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus atrophaeus C89]
Length = 490
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 154/382 (40%), Positives = 220/382 (57%), Gaps = 30/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNK-LESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G RTG++ ++ YI D + TTP++V +Q KM N + +ME SSH L++G
Sbjct: 128 GKRTGLIGTM--YIKIDEETFPVKNTTPESVTLQKTFKKMNDNHVDTAIMEVSSHALSMG 185
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPN 116
R D+DIAVFTNLT+DH+D+H T +EYR AK+ LFS++ H R ++N DD
Sbjct: 186 RVHGCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEKPKRAILNADDEA 245
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
+ + + + T+ ++N ADV + + T + T G I+ L+G+ N
Sbjct: 246 SAYY--EKVTAAHISTYGIKND-ADVMAKHIKTTAQGTSFELVTNKGTKPITISLVGQFN 302
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN+LAAVA IA G P E + +EE+ V GR EL+++ Q F VIVDYAHTPD+L +
Sbjct: 303 VYNVLAAVATCIAAGIPFETVAEAVEELHGVRGRFELVNKNQEFPVIVDYAHTPDSLENV 362
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L + +++ ++ VVGC G+ D+ KRP M KIA +D I TSDNP +EDPL IL DM
Sbjct: 363 LKTCKDMTEGKVFVVVGCGGDRDKTKRPKMAKIAVQLADEPIFTSDNPRSEDPLAILRDM 422
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AGV EN+YY + N R A+ A+A +GD+V++AGKGHE
Sbjct: 423 EAGV-----------ENEYYHSIAN---------REQAIFFAIANARKGDVVLIAGKGHE 462
Query: 357 TYQIEGDKKEFFDDREESREAL 378
TYQ G + FDD E + A+
Sbjct: 463 TYQQIGAETFDFDDAEVAARAI 484
>gi|424823808|ref|ZP_18248821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
ligase [Listeria monocytogenes str. Scott A]
gi|332312488|gb|EGJ25583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
ligase [Listeria monocytogenes str. Scott A]
Length = 494
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 222/382 (58%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 130 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY NAK+ LF+++ + V+N DD +
Sbjct: 189 VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEES 248
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q V+TF ++ ++AD ++ + + TP G + ++G ++
Sbjct: 249 VRM--QKATAAHVITFGIK-QQADFKASNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSV 305
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+E ++ +E + V GR EL+ Q F VIVDYAHTPD L +L
Sbjct: 306 YNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTPDGLLNVL 365
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+
Sbjct: 366 ETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPRAIIEDMI 425
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV ++ D Y +H+ RR A+R AV E GD++++AGKGHE
Sbjct: 426 QGVPYS----------DSY---------VVHENRRDAIRFAVNEAEAGDVILIAGKGHED 466
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 467 YQVIGDEVIDFDDRVEARIAIE 488
>gi|260893417|ref|YP_003239514.1| UDP-N-acetylmuramyl tripeptide synthetase [Ammonifex degensii KC4]
gi|260865558|gb|ACX52664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4]
Length = 492
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 156/380 (41%), Positives = 226/380 (59%), Gaps = 22/380 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ Y G+ RTTP+++ +Q+ +A+M+ G E VME SSHGLAL R
Sbjct: 128 GKKVGLIGTL-YVKLGEKAFPGERTTPESLDLQSWLARMVEEGIEVAVMEVSSHGLALER 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV--DPERHRKVVNIDDPNATS 119
+ V FD+AVFTNLT+DH+DFH E+Y KA+LF+ ++ P + V+N DDP
Sbjct: 187 VTGVAFDVAVFTNLTQDHLDFHRDLEDYFQTKARLFTELLGEKPGKKLAVINRDDPYGQR 246
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ V V+T+ + K+ +VH L +EL T++L + +E+ L G N+YN
Sbjct: 247 LTSLCR-GVEVLTYGL--KEGEVHALDYELRPEGTRLLASAGGERVEVKLSLPGIFNVYN 303
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
LAA+AV + G PL+ R + V AVPGRCE IDE Q F V+VDYAHTPD L +L +
Sbjct: 304 ALAALAVAVGEGMPLDLAARALSRVQAVPGRCERIDEGQDFTVLVDYAHTPDGLLNILRT 363
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
RE++ R+I V GC G+ D KRP+M +IA + +D+ ++TSDNP +EDP+ I+ + G
Sbjct: 364 AREISRGRVIVVFGCGGDRDPSKRPVMGRIAGEYADLVVVTSDNPRSEDPVAIMQAIAQG 423
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ PP R L + R A++ A A GD+V++AGKGHE Q
Sbjct: 424 LAQVA------------PP----SRYLLIEDREAAIKEAFARARPGDIVILAGKGHENCQ 467
Query: 360 IEGDKKEFFDDREESREALQ 379
I GDK+ FDDRE +R L+
Sbjct: 468 IIGDKRIPFDDREVARRLLR 487
>gi|424714916|ref|YP_007015631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Listeria monocytogenes serotype 4b str. LL195]
gi|424014100|emb|CCO64640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Listeria monocytogenes serotype 4b str. LL195]
Length = 510
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 222/382 (58%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 146 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 204
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY NAK+ LF+++ + V+N DD +
Sbjct: 205 VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEES 264
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q V+TF ++ ++AD ++ + + TP G + ++G ++
Sbjct: 265 VRM--QKATAAHVITFGIK-QQADFKANNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSV 321
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+E ++ +E + V GR EL+ Q F VIVDYAHTPD L +L
Sbjct: 322 YNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTPDGLLNVL 381
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+
Sbjct: 382 ETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPRAIIEDMI 441
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV ++ D Y +H+ RR A+R AV E GD++++AGKGHE
Sbjct: 442 QGVPYS----------DSY---------VVHENRRDAIRFAVNEAEAGDVILIAGKGHED 482
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 483 YQVIGDEVIDFDDRVEARIAIE 504
>gi|261405661|ref|YP_003241902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
Y412MC10]
gi|261282124|gb|ACX64095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
Y412MC10]
Length = 494
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 160/388 (41%), Positives = 223/388 (57%), Gaps = 31/388 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
GL+TG++ ++ +G PRTTP+A+ +Q + M + GTE VME SSH L G
Sbjct: 126 FGLKTGLIGTIQMK-YGGQSFPMPRTTPEALELQRYLNDMANAGTECCVMEVSSHALEQG 184
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRK--VVNIDD 114
R DF A+FTNLT+DH+D+H T EEYR AK FSR+ + E RK V+N DD
Sbjct: 185 RVKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDESARKYAVLNADD 244
Query: 115 PNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGR 174
+ F Q +V +T+ + + ADV ++ T V+T G +IS ++G+
Sbjct: 245 DASAYFAKQTAAEV--ITYGL-GEDADVRASNISITAQGTSFHVDTFRGSADISIRMVGK 301
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+YN +AA+A + G PLEDI +E V V GR E++DE Q + VIVDYAHTPD L
Sbjct: 302 FNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVVDEGQPYAVIVDYAHTPDGLE 361
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L +V E A R++TV GC G+ DR KRP+M KIA SDV +TSDNP EDP IL
Sbjct: 362 NVLRTVNEFAEGRVLTVFGCGGDRDRTKRPIMGKIAAKYSDVVFVTSDNPRTEDPELILK 421
Query: 295 DMLAGV---GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
D+ AG+ G + Y +L + RR A+ A+ M GD+V++A
Sbjct: 422 DIEAGLVEDGVATESY----------------KLIVD--RRKAIEKAIEMASPGDVVLIA 463
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHETYQ+ + FDDR +++A++
Sbjct: 464 GKGHETYQLIAGEVLDFDDRIVAKDAIR 491
>gi|260886499|ref|ZP_05897762.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
sputigena ATCC 35185]
gi|260863642|gb|EEX78142.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
sputigena ATCC 35185]
Length = 968
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/386 (40%), Positives = 222/386 (57%), Gaps = 35/386 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ + D L TTPD V+++ +A M G + VVME SSH L R
Sbjct: 133 GYKVGLIGTIQILVE-DEALPIHNTTPDVVVLERTLAYMARRGMDFVVMEVSSHALDQNR 191
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLF---SRMVDPERHRKVVNIDDPNAT 118
+ ++FD AVFTNLT+DH+D+H T E Y+ AKA+LF SR E VVN DD
Sbjct: 192 VAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKEGKTAVVNDDDAAGE 251
Query: 119 SFIAQGNPDVPVVTFAMENKKA------DVHPLKFELSLFETQVLVNTPHGILEISSGLL 172
+ +A +T+A++ + A VH EL+L G +++S G+
Sbjct: 252 TMLAHAK--CAHLTYAVKKEAALRAENIRVHARGLELTL-------AGAFGRMDLSLGVT 302
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
G N+YN+++AV +A E I R +E +VPGR EL+D QAF +IVDYAHTPD
Sbjct: 303 GIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDAGQAFSIIVDYAHTPDG 362
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L +L++ RE+A RI+TV GC G+ DR KRP+M +IA SDV ++TSDNP EDP I
Sbjct: 363 LENILNTAREIAAGRILTVFGCGGDRDRTKRPIMGRIAAALSDVVLVTSDNPRTEDPARI 422
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
LD++ GV L+ + + + + RR A+ AVA+ E+ D+V++AG
Sbjct: 423 LDEVEVGV-------LEKIGDKCHEKIAD---------RRTAIVRAVALAEKDDIVIIAG 466
Query: 353 KGHETYQIEGDKKEFFDDREESREAL 378
KGHE YQI DK FDD+E +REA+
Sbjct: 467 KGHENYQILKDKTIHFDDKEVAREAV 492
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 18/224 (8%)
Query: 41 LHNGTEAVVMEASSHGLA--LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFS 98
L EA V+E GL +A+ TN+ HM+ G+ E AKA+L
Sbjct: 654 LRAAHEAAVVEIGMRGLGQIAALAPLAAPTVAIVTNVGEVHMELLGSIENIARAKAELVE 713
Query: 99 RMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLV 158
V+P ++N DD + + V VVTF + ++ ADV + + + ++
Sbjct: 714 -AVEPG-GTVILNADDARVLAMREKAKAGVRVVTFGL-SRDADVRAVAVGKAEGGMRFML 770
Query: 159 --NTPHGILEISSGLL---GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCEL 213
G LE L GRHN+ N LAA+A +G L D+ RG+ AVP ++
Sbjct: 771 EWKNERGRLERHELFLPMPGRHNVSNALAAIAAARVLGLSLADVRRGL----AVPPAQKM 826
Query: 214 ---IDEEQAFGVIVD-YAHTPDALSRLLDSVRELAPRRIITVVG 253
+++ A+ + D Y +P + L ++ E+ R I V+G
Sbjct: 827 RFAVEKCGAYTFVNDAYNASPVSTRASLKTLAEMFAGRKIAVLG 870
>gi|313891502|ref|ZP_07825115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Dialister microaerophilus UPII 345-E]
gi|313120079|gb|EFR43258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Dialister microaerophilus UPII 345-E]
Length = 498
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 220/385 (57%), Gaps = 24/385 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ I GD + E+ TTPD + +Q L+ KM V ME SSH L LGR
Sbjct: 130 GYKTGVIGTIHALI-GDEEFETHNTTPDIIDLQRLLYKMKKAKVTHVCMEVSSHSLVLGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK-----VVNIDDPN 116
+FD AVF+NLT DH+DFH T Y NAKAKLFS MV E K +NIDD
Sbjct: 189 VEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFS-MVSEEGQVKPNKNACINIDDDY 247
Query: 117 ATSFI--AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGR 174
+ I + + TF+M N+ A++ + E + T+ + + ++ L+GR
Sbjct: 248 SHIMIDAIKDRKLCKLHTFSM-NRDAELKVISTEFTGKNTKFICVYKNKEYPVTVKLMGR 306
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+YNI+AA++ ++ G I++ + + VPGR ELIDE Q F V+VDYAHTPD L
Sbjct: 307 FNVYNIMAAMSAALSEGIDFNFIIKALTDFTNVPGRFELIDEGQEFSVVVDYAHTPDGLE 366
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L + RE+ +II V GC G+ D KRP+M +IA SD+ I+TSDNP EDP I++
Sbjct: 367 NILTTAREITTGKIIVVFGCGGDRDPMKRPIMGRIAAKYSDIAIVTSDNPRTEDPNSIVE 426
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
++ GV ++Y N Y L + RR A++ A+ + D+V++AGKG
Sbjct: 427 QVVKGVKENAEKY-----NCKYKVLVD---------RRSAIKEAIEIARVNDIVIIAGKG 472
Query: 355 HETYQIEGDKKEFFDDREESREALQ 379
HE YQI +K FDDREE+R L+
Sbjct: 473 HEDYQILKNKTIHFDDREEARRVLR 497
>gi|46908274|ref|YP_014663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes serotype 4b str. F2365]
gi|405753266|ref|YP_006676731.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2378]
gi|67460841|sp|Q71XX5.1|MURE_LISMF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|46881545|gb|AAT04840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes serotype 4b str. F2365]
gi|404222466|emb|CBY73829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2378]
Length = 491
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 222/382 (58%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY NAK+ LF+++ + V+N DD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q V+TF ++ ++AD ++ + + TP G + ++G ++
Sbjct: 246 VRM--QKATAAHVITFGIK-QQADFKANNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+E ++ +E + V GR EL+ Q F VIVDYAHTPD L +L
Sbjct: 303 YNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTPDGLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+
Sbjct: 363 ETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPRAIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV ++ D Y +H+ RR A+R AV E GD++++AGKGHE
Sbjct: 423 QGVPYS----------DSY---------VVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 464 YQVIGDEVIDFDDRVEARIAIE 485
>gi|302389511|ref|YP_003825332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermosediminibacter oceani DSM 16646]
gi|302200139|gb|ADL07709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermosediminibacter oceani DSM 16646]
Length = 485
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 224/378 (59%), Gaps = 28/378 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ I + L + RTTP+++ + + ++M+ G E V ME SSH L L R
Sbjct: 130 GYSTGVVGTIGIRIK-ERLLPAERTTPESLELNEIFSEMVKEGVEYVTMEVSSHSLKLHR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V F++ VFTNLT+DH+DFH + E+Y +K KLF D R + V+N+DD +
Sbjct: 189 VDHVKFEVGVFTNLTQDHLDFHVSFEDYYASKKKLF----DLSR-KAVINVDDESGERLC 243
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
++ N +PV+T+A+E K ADV + V +I+ + GR ++YN L
Sbjct: 244 SELN--IPVITYAIE-KNADVRAENVVIGSDGVSYEVCAGGERRKITYKVPGRFSVYNSL 300
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA++ +++G LE + + +E+V VPGR E +DE Q F VIVDYAHTPD L +L++V+
Sbjct: 301 AAISACLSLGIDLETMAKALEKVRGVPGRFEPVDEGQDFTVIVDYAHTPDGLENVLNTVK 360
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
A RIITV G G+ DRGKRPLM K+ +++SD I+TSDNP EDP I+DD+ GV
Sbjct: 361 TFARGRIITVFGAGGDRDRGKRPLMGKVVSERSDYFIITSDNPRTEDPQAIIDDIEKGV- 419
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
E Y + + RR A+R A+ M GD+V++AGKGHE YQI
Sbjct: 420 ---------TERSNYEKIID---------RREAIRRAIEMALPGDVVLIAGKGHEDYQII 461
Query: 362 GDKKEFFDDREESREALQ 379
GDK FDDRE +RE L+
Sbjct: 462 GDKVLHFDDREVAREFLR 479
>gi|27262268|gb|AAN87415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Heliobacillus mobilis]
Length = 528
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 152/383 (39%), Positives = 222/383 (57%), Gaps = 26/383 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ + G+ + + TTP++ +Q L+A+M +G +AVVME SSH L R
Sbjct: 160 GYSVGVIGTIGNQL-GEKRWPAAHTTPESSDLQKLLAEMRDDGADAVVMEVSSHSLDQHR 218
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH-----RKVVNIDDPN 116
V+FDIA FTNLT+DH+D+H T E YR AK KLF + E R V+N DDP+
Sbjct: 219 VLGVNFDIAAFTNLTQDHLDYHHTLENYRAAKGKLFRELGQKESKKGIVKRAVINADDPS 278
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
A F+ + VP VT+ +E A + ++++ + V P G ++++ L GR N
Sbjct: 279 ADYFLQVSS--VPAVTYGVEEDAA-IRAKDWDVTPQGARCTVQYPGGTVDMTLQLTGRFN 335
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
I N LAA VG VG E IV ++ + VPGR E +D+ Q F VIVDYAHTPD L +
Sbjct: 336 ISNSLAAFTVGWIVGMEPEQIVEALQSLRGVPGRFESVDQGQPFSVIVDYAHTPDGLVNV 395
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L++ LA +I+TV GC G+ DR KRP+M + + SD+ ++TSDNP E+P I++D+
Sbjct: 396 LNTAEALAEGKIVTVFGCGGDRDRTKRPIMGAVVAEMSDIAVVTSDNPRTENPHRIIEDI 455
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
L GV +P G + R+ A+ A++M GD+V++AGKGHE
Sbjct: 456 LPGV----------------QAVP-GIEYKVEPDRKKAIALALSMANPGDLVMIAGKGHE 498
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
YQI G + FDDRE +R+ L+
Sbjct: 499 NYQIVGKEVLPFDDREVARQVLR 521
>gi|315646026|ref|ZP_07899147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
V453]
gi|315278787|gb|EFU42101.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
V453]
Length = 495
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 228/387 (58%), Gaps = 31/387 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL+TG++ ++ +G+ PRTTP+A+ +Q + M + GTE VME SSH L GR
Sbjct: 127 GLKTGLIGTIQMK-YGNQSFPMPRTTPEALELQRYLNDMANAGTECCVMEVSSHALEQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRK--VVNIDDP 115
DF A+FTNLT+DH+D+H T EEYR AK FSR+ + E+ RK V+N DD
Sbjct: 186 VKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDEKSRKYAVLNADD- 244
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+A+++ A+ V+T+ + + ADV ++ T V+T G +IS ++G+
Sbjct: 245 DASAYFAKITA-AEVITYGL-GEDADVRASNISITAQGTSFHVDTFRGSADISIRMVGKF 302
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN +AA+A + G PLEDI +E V V GR E++DE Q + VIVDYAHTPD L
Sbjct: 303 NVYNAMAAIAAALLEGVPLEDIKSSLESVPGVDGRVEVVDEGQPYAVIVDYAHTPDGLEN 362
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +V E A R++TV GC G+ DR KRP+M KIA SDV ++TSDNP EDP IL D
Sbjct: 363 VLRTVNEFAEGRVLTVFGCGGDRDRTKRPIMGKIAAKYSDVVLVTSDNPRTEDPDLILKD 422
Query: 296 MLAGV---GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ AG+ G + Y L + RR A+ A+ M GD+V++AG
Sbjct: 423 IEAGLIEDGVAAESY----------------NLIVD--RRKAIEKAIEMASPGDVVLIAG 464
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHETYQ+ + FDDR +++A++
Sbjct: 465 KGHETYQLIAGEVLDFDDRIVAKDAIR 491
>gi|335040561|ref|ZP_08533687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Caldalkalibacillus thermarum TA2.A1]
gi|334179531|gb|EGL82170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Caldalkalibacillus thermarum TA2.A1]
Length = 508
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/381 (39%), Positives = 227/381 (59%), Gaps = 22/381 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG + +++ I G+ +E TTP+++ +Q ML V+E SSH L +GR
Sbjct: 141 GRKTGRIGTINMKI-GERLVEVKNTTPESLHLQQAFHDMLQAKCSHAVIEVSSHALDMGR 199
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD--PERHRK--VVNIDDPNA 117
+F +A+FTNLT+DH+D+H + EEY+ AK LFS++ + ER K ++N DDP A
Sbjct: 200 VRGCNFGVAIFTNLTQDHLDYHQSMEEYKRAKGLLFSQLGNGISERDLKYAILNADDP-A 258
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+S+ A+ P V+T+ +++++AD+ LS V+ + + L+G N+
Sbjct: 259 SSYYAKITP-AQVLTYGIKSEQADIKAADITLSPRGVSFTVHYGTEQEQFNVPLVGMFNV 317
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAV G+ G L I + EV +PGR E+++ Q F VIVDYAHTPD+L+ +L
Sbjct: 318 YNVLAAVGAGVVEGLSLRQISDSLSEVQGIPGRMEVVEAGQDFTVIVDYAHTPDSLANVL 377
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ R+LA +R+I VVGC G+ DRGKRPLM ++A +D+T+LTSDNP +EDP I+ DM
Sbjct: 378 STARQLARKRLICVVGCGGDRDRGKRPLMAQMAVKYADLTVLTSDNPRSEDPAAIIRDME 437
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+ KY + D RR A+ A+ E+ D++++AGKGHET
Sbjct: 438 KGLIEQDVSQTKYTS--------------IID-RRQAIHWAINKAEKDDVIIIAGKGHET 482
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ ++ FDDRE +REAL
Sbjct: 483 YQEIKGQRFHFDDREVAREAL 503
>gi|330839657|ref|YP_004414237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Selenomonas sputigena ATCC
35185]
gi|329747421|gb|AEC00778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Selenomonas sputigena ATCC
35185]
Length = 966
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/386 (40%), Positives = 222/386 (57%), Gaps = 35/386 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ + D L TTPD V+++ +A M G + VVME SSH L R
Sbjct: 131 GYKVGLIGTIQILVE-DEALPIHNTTPDVVVLERTLAYMARRGMDFVVMEVSSHALDQNR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLF---SRMVDPERHRKVVNIDDPNAT 118
+ ++FD AVFTNLT+DH+D+H T E Y+ AKA+LF SR E VVN DD
Sbjct: 190 VAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKEGKTAVVNDDDAAGE 249
Query: 119 SFIAQGNPDVPVVTFAMENKKA------DVHPLKFELSLFETQVLVNTPHGILEISSGLL 172
+ +A +T+A++ + A VH EL+L G +++S G+
Sbjct: 250 TMLAHAK--CAHLTYAVKKEAALRAENIRVHARGLELTL-------AGAFGRMDLSLGVT 300
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
G N+YN+++AV +A E I R +E +VPGR EL+D QAF +IVDYAHTPD
Sbjct: 301 GIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDAGQAFSIIVDYAHTPDG 360
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L +L++ RE+A RI+TV GC G+ DR KRP+M +IA SDV ++TSDNP EDP I
Sbjct: 361 LENILNTAREIAAGRILTVFGCGGDRDRTKRPIMGRIAAALSDVVLVTSDNPRTEDPARI 420
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
LD++ GV L+ + + + + RR A+ AVA+ E+ D+V++AG
Sbjct: 421 LDEVEVGV-------LEKIGDKCHEKIAD---------RRTAIVRAVALAEKDDIVIIAG 464
Query: 353 KGHETYQIEGDKKEFFDDREESREAL 378
KGHE YQI DK FDD+E +REA+
Sbjct: 465 KGHENYQILKDKTIHFDDKEVAREAV 490
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 18/224 (8%)
Query: 41 LHNGTEAVVMEASSHGLA--LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFS 98
L EA V+E GL +A+ TN+ HM+ G+ E AKA+L
Sbjct: 652 LRAAHEAAVVEIGMRGLGQIAALAPLAAPTVAIVTNVGEVHMELLGSIENIARAKAELVE 711
Query: 99 RMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLV 158
V+P ++N DD + + V VVTF + ++ ADV + + + ++
Sbjct: 712 -AVEPG-GTVILNADDARVLAMREKAKAGVRVVTFGL-SRDADVRAVAVGKAEGGMRFML 768
Query: 159 --NTPHGILEISSGLL---GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCEL 213
G LE L GRHN+ N LAA+A +G L D+ RG+ AVP ++
Sbjct: 769 EWKNERGRLERHELFLPMPGRHNVSNALAAIAAARVLGLSLADVRRGL----AVPPAQKM 824
Query: 214 ---IDEEQAFGVIVD-YAHTPDALSRLLDSVRELAPRRIITVVG 253
+++ A+ + D Y +P + L ++ E+ R I V+G
Sbjct: 825 RFAVEKCGAYTFVNDAYNASPVSTRASLKTLAEMFAGRKIAVLG 868
>gi|255520496|ref|ZP_05387733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J1-175]
Length = 513
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 222/382 (58%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY NAK+ LF+++ + V+N DD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q V+TF ++ ++AD ++ + + TP G + ++G ++
Sbjct: 246 VRM--QKATAAHVITFGIK-QQADFKASNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+E ++ +E + V GR EL+ Q F VIVDYAHTPD L +L
Sbjct: 303 YNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTPDGLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+
Sbjct: 363 ETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPRAIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV ++ D Y +H+ RR A+R AV E GD++++AGKGHE
Sbjct: 423 QGVPYS----------DSY---------VVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 464 YQVIGDEVIDFDDRVEARIAIR 485
>gi|255026329|ref|ZP_05298315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J2-003]
Length = 491
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 144/380 (37%), Positives = 221/380 (58%), Gaps = 23/380 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP--ERHRKVVNIDDPNATS 119
D+D+AVF NL++DH+D+H T EEY NAK+ LF+++ + + K+ ++ +A S
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDAES 245
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
Q ++TF ++ ++AD +++ + + TP G + ++G ++YN
Sbjct: 246 VRMQKATAAHIITFGIK-QEADFQASNIKITSHGSTFDLGTPVGNFTLKIKMIGNFSVYN 304
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA+A A+ +E ++ +E + V GR EL+ Q F VIVDYAHTPD L +L++
Sbjct: 305 VLAAIATSFALHISMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTPDGLLNVLET 364
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+ G
Sbjct: 365 IDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPRAIIEDMIQG 424
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V P +H+ RR A+R AV E GD++++AGKGHE YQ
Sbjct: 425 V-------------------PESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKGHEDYQ 465
Query: 360 IEGDKKEFFDDREESREALQ 379
+ GD+ FDDR E+R A++
Sbjct: 466 VVGDEVIDFDDRVEARIAIE 485
>gi|329122138|ref|ZP_08250746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dialister micraerophilus DSM 19965]
gi|327466945|gb|EGF12461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dialister micraerophilus DSM 19965]
Length = 498
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 153/384 (39%), Positives = 219/384 (57%), Gaps = 22/384 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ I GD + E+ TTPD + +Q L+ KM V ME SSH L LGR
Sbjct: 130 GYKTGVIGTIHALI-GDEEFETHNTTPDVIDLQRLLYKMKKAKVTHVCMEVSSHSLVLGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK-----VVNIDDPN 116
+FD AVF+NLT DH+DFH T Y NAKAKLFS MV E K +NIDD
Sbjct: 189 VEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFS-MVSEEGQVKSNKNACINIDDDY 247
Query: 117 ATSFI-AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+ I A + + + + N+ A++ + E + T+ + + ++ L+GR
Sbjct: 248 SHIMIDAIKDRKLCKLHTSSMNRDAELKVISTEFTGKNTKFICVYKNKEYPVTVKLMGRF 307
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YNI+AA++ I+ G I++ + + VPGR ELIDE Q F V+VDYAHTPD L
Sbjct: 308 NVYNIMAAMSAAISEGIDFNFIIKALTDFTNVPGRFELIDEGQEFSVVVDYAHTPDGLEN 367
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L + RE+ +II V GC G+ D KRP+M +IA SD+ I+TSDNP EDP I++
Sbjct: 368 ILTTAREITTGKIIVVFGCGGDRDPMKRPIMGRIAAKYSDIAIVTSDNPRTEDPNSIVEQ 427
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
++ GV ++Y N Y L + RR A++ A+ + D+V++AGKGH
Sbjct: 428 VVKGVKENAEKY-----NCKYKVLVD---------RRSAIKEAIEIARVNDIVIIAGKGH 473
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
E YQI +K FDDREE+R L+
Sbjct: 474 EDYQILKNKTIHFDDREEARRVLR 497
>gi|402833336|ref|ZP_10881955.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. CM52]
gi|402280647|gb|EJU29348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. CM52]
Length = 966
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 156/386 (40%), Positives = 221/386 (57%), Gaps = 35/386 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ + D L TTPD V+++ +A M G + VVME SSH L R
Sbjct: 131 GYKVGLIGTIQILVE-DEVLPIHNTTPDVVVLERTLAYMARRGMDFVVMEVSSHALDQNR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLF---SRMVDPERHRKVVNIDDPNAT 118
+ ++FD AVFTNLT+DH+D+H T E Y+ AKA+LF SR +VNIDD
Sbjct: 190 VAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKAGKTAIVNIDDAAGE 249
Query: 119 SFIAQGNPDVPVVTFAMENKKA------DVHPLKFELSLFETQVLVNTPHGILEISSGLL 172
+ +A +T+A++ + A VH EL+L G +++S G+
Sbjct: 250 TMLAHAK--CAHLTYAVKKEAALRAENIRVHARGMELTL-------TGAFGRMDLSLGVT 300
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
G N+YN+++AV +A E I R +E +VPGR EL+D QAF +IVDYAHTPD
Sbjct: 301 GIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDAGQAFSIIVDYAHTPDG 360
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L +L++ RE+ RI+TV GC G+ DR KRP+M +IA SDV ++TSDNP EDP I
Sbjct: 361 LENILNTAREITAGRILTVFGCGGDRDRTKRPIMGRIAAALSDVVLVTSDNPRTEDPARI 420
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
LD++ GV K G+ + + D RR A+ AVA+ E+ D+V++AG
Sbjct: 421 LDEVEVGV------LEKIGDKRHEK---------IAD-RRTAIVRAVALAEKDDIVIIAG 464
Query: 353 KGHETYQIEGDKKEFFDDREESREAL 378
KGHE YQI DK FDD+E +REA+
Sbjct: 465 KGHENYQILKDKTIHFDDKEVAREAV 490
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 18/224 (8%)
Query: 41 LHNGTEAVVMEASSHGLA--LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFS 98
L EA V+E GL +A+ TN+ HM+ G+ E AKA+L
Sbjct: 652 LRAAHEAAVVEIGMRGLGQIAALAPLAAPTVAIVTNVGEVHMELLGSIENIARAKAELVE 711
Query: 99 RMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLV 158
V+P ++N DD + V VVTF + ++ ADV + + + ++
Sbjct: 712 -AVEPG-GTVILNADDARVLVMREKAKAGVRVVTFGL-SRSADVRAVAVGKAEGGMRFML 768
Query: 159 --NTPHGILEISSGLL---GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCEL 213
G LE L GRHN+ N LAA+A +G L D+ RG+ AVP ++
Sbjct: 769 EWKNERGRLERHELFLPMPGRHNVSNALAAIAAARVLGLSLVDVRRGL----AVPPAQKM 824
Query: 214 ---IDEEQAFGVIVD-YAHTPDALSRLLDSVRELAPRRIITVVG 253
+++ A+ + D Y +P + L ++ E+ R I V+G
Sbjct: 825 RFAVEKCGAYTFVNDAYNASPASTRASLKTLAEMFAGRKIAVLG 868
>gi|258514337|ref|YP_003190559.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfotomaculum
acetoxidans DSM 771]
gi|257778042|gb|ACV61936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
acetoxidans DSM 771]
Length = 498
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 161/382 (42%), Positives = 220/382 (57%), Gaps = 24/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ + Y + G+ E TTP++ +Q+L++ ML G E V ME SSH L L R
Sbjct: 129 GHRTGLIGT-CYNLIGEEIFEVKHTTPESTDLQSLLSAMLKAGVEVVAMEVSSHALNLHR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV-DPERH---RKVVNIDDPNA 117
+FDIAVFTNLT+DH+DFH E+Y AK+ LFS + D ++ ++N DD A
Sbjct: 188 VDGCEFDIAVFTNLTQDHLDFHENMEDYLAAKSILFSGLQGDGGKNGAKYAIINADDEAA 247
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
V +T+ M KKAD+ + V + G + I+ L G+ N+
Sbjct: 248 ARLTRLSGGQV--ITYGMV-KKADIIAENITVRADGASFTVASRQGKVTINLNLTGKFNV 304
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA +VG+ G + I +E V VPGR EL+DE Q F VIVDYAHTPD L +L
Sbjct: 305 YNALAAYSVGMVSGFSPQVIKHALEGVKGVPGRFELVDEGQDFAVIVDYAHTPDGLRNIL 364
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ RE ++I V GC G+ DR KRPLM +I+ SD TI+TSDNP ED I+ D+L
Sbjct: 365 NTAREFTAGKLINVFGCGGDRDRTKRPLMGEISGRLSDFTIVTSDNPRREDADRIILDIL 424
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+ + E DYY + + RR A++ A+A GD+V++AGKGHET
Sbjct: 425 VGISRVV-------ERDYYTIISD---------RRAAIKAALAQAASGDVVIIAGKGHET 468
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI GD + FDDREE R+AL+
Sbjct: 469 YQIIGDVRYAFDDREEVRQALR 490
>gi|312898965|ref|ZP_07758353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
micronuciformis F0359]
gi|310620127|gb|EFQ03699.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
micronuciformis F0359]
Length = 498
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 155/386 (40%), Positives = 225/386 (58%), Gaps = 23/386 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ I D +LE TTPD V +Q L+A M G + VVME SSH LAL R
Sbjct: 131 GYHVGVIGTIHALID-DKELEIHNTTPDVVELQALLALMCAEGMDYVVMEVSSHALALNR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD--PERHRK--VVNIDDPNA 117
+ +++D AVFTNLT+DH+DFH + E Y AKAKLFS + P + K V+NIDDP+A
Sbjct: 190 VAGIEYDTAVFTNLTQDHLDFHKSFENYVAAKAKLFSGLTAEPPVKKNKTAVINIDDPHA 249
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + V+T+ +E K AD+ ++ L + V P + + + G N+
Sbjct: 250 DEILKATS--CKVLTYGVE-KDADLKGSNLQVGLKSSSFDVVGPFVSVSLHMHITGLFNV 306
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ A G + I + ++ +VPGR EL++ Q F ++VDY+HTPD+L + L
Sbjct: 307 YNTLAAIGAAHAEGVDTDVIDKAVQTFYSVPGRFELVEAGQDFAIVVDYSHTPDSLEKAL 366
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ R + P RIITV GC G+ DR KRP+M IA +D+ I+TSDNP +EDP I+ ++
Sbjct: 367 TTARAMKPNRIITVFGCGGDRDRTKRPIMGGIAAQYADIPIVTSDNPRSEDPEFIISEVE 426
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV ++E G R + RR A+ A+ + E GD+V++AGKGHET
Sbjct: 427 GGVRAALKE---------------GQRHEVIVDRRQAIYKAIEIAEPGDIVLIAGKGHET 471
Query: 358 YQIEGDKKEFFDDREESREALQYVDE 383
YQI D FDDRE +R+A++ + E
Sbjct: 472 YQILKDGTIHFDDREVARDAVRELKE 497
>gi|452974581|gb|EME74401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sonorensis L12]
Length = 488
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 153/382 (40%), Positives = 223/382 (58%), Gaps = 30/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKL-ESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G RTG++ ++ Y+ +N++ + TTP++V +Q KM+ + +ME SSH L +G
Sbjct: 128 GSRTGLIGTM--YMKINNEIFDVKNTTPESVTLQKTFKKMVDQNVDTAIMEVSSHALHMG 185
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPN 116
R D+DIA FTNLT+DH+D+H T EEY++AK+ LFS++ H V+N DDP
Sbjct: 186 RVHGCDYDIAAFTNLTQDHLDYHQTMEEYKHAKSLLFSQLGGAFNHENPKWAVLNADDP- 244
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
A+ + AQ ++T+ + N AD+ E++ T + TP G ++ L+GR N
Sbjct: 245 ASEYFAQVT-SAHLLTYGISNS-ADIMAKHIEMAPKGTTFDLVTPKGTERVTIPLVGRFN 302
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN+L A A+G A P + IV I+ + V GR EL+D Q F VIVDYAHTPD+L +
Sbjct: 303 VYNVLTAAAIGFAADIPFDVIVEAIKGLQGVRGRFELVDAGQDFPVIVDYAHTPDSLENV 362
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L++ R L ++ VVGC G+ D+ KRP M KIA + +D I T+DNP +EDPL IL DM
Sbjct: 363 LNTCRGLTEGKLFVVVGCGGDRDKTKRPKMAKIAAELADEPIFTADNPRSEDPLAILHDM 422
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
GV + YY + N R A+ A+A ++GD+V++AGKGHE
Sbjct: 423 EEGV-----------KGSYYHSIVN---------REQAIFFAIANAKKGDVVLIAGKGHE 462
Query: 357 TYQIEGDKKEFFDDREESREAL 378
TYQ G + FDD E +R A+
Sbjct: 463 TYQQIGGQTFDFDDAEVARRAI 484
>gi|403745269|ref|ZP_10954207.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
hesperidum URH17-3-68]
gi|403121497|gb|EJY55790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
hesperidum URH17-3-68]
Length = 498
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 162/383 (42%), Positives = 219/383 (57%), Gaps = 27/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ +V +GD +L P TTP+AV V L+ G VME SSH L R
Sbjct: 130 GKRTGVIGTVGAK-YGDVELPLPNTTPEAVEVHRLLRVFADAGCSHAVMEVSSHALVERR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP------ERHRKVVNIDDP 115
+ V F A FTNLT+DH+DFHGT E Y AK+ LF+R+ + V+N DDP
Sbjct: 189 AAGVAFASAAFTNLTQDHLDFHGTMERYAAAKSLLFARLGNAFDESTGNAPHAVINADDP 248
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
A + + P++T+ +E ++AD+ +LS + V TP GIL +GL+GR
Sbjct: 249 WAQTMMDATT--APILTYGIE-READIRAEDVQLSAAGAHLRVRTPVGILTAHTGLIGRF 305
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAA+A+ + G L+ I G+ VPGRCE ID Q FGV VDYAHTPD ++
Sbjct: 306 NVYNALAAIAIALVEGVQLDTIATGLASYAGVPGRCERIDGGQPFGVFVDYAHTPDGVAN 365
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L SVRE A R+I V+GC G+ DR KRP M + A +D+ I TSDNP +EDP IL D
Sbjct: 366 ILTSVREFAQGRVIVVIGCGGDRDRTKRPRMAETAAQLADLAIFTSDNPRSEDPHAILAD 425
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
M AG+ + ++ + RR A+R A+ D+VV+AGKGH
Sbjct: 426 MRAGIPANLASKVREQVD-----------------RRQAIRDAIREARPTDIVVIAGKGH 468
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E YQI G ++ FDDREE+R A+
Sbjct: 469 EDYQIIGSERLHFDDREEARLAI 491
>gi|299821554|ref|ZP_07053442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Listeria grayi DSM 20601]
gi|299817219|gb|EFI84455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Listeria grayi DSM 20601]
Length = 494
Score = 263 bits (673), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 150/387 (38%), Positives = 221/387 (57%), Gaps = 27/387 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ Y G LE+ TTPD++ +Q +ML + V ME SSH L GR
Sbjct: 130 GSETGLIGTM-YRKIGREILETKNTTPDSLTLQRTYHEMLAADVQTVAMEVSSHALVQGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHR-KVVNIDDPNA 117
DFDIAVFTNL++DH+D+H T EEY AK+ LF+++ D E+ + ++N DDP +
Sbjct: 189 TYGTDFDIAVFTNLSQDHLDYHKTMEEYAYAKSLLFAQLGNSYDSEKPKYAIINQDDPVS 248
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ PV+T+ + +K AD ++ T ++TP G ++ ++G+ +I
Sbjct: 249 QRM--KTATAAPVITYGI-DKAADFGATDVMVTSSGTTFKLHTPDGDFDVRIKMIGKFSI 305
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+A A+ P+ + +E+V V GR E++D Q F VIVDYAHTPD L +L
Sbjct: 306 YNCLAALATSYALEIPIHQAITSLEKVQGVAGRFEIVDAGQDFTVIVDYAHTPDGLLNVL 365
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ E R+ +VGC G+ D+GKRP M KIA D + + TSDNP +EDP I+ DML
Sbjct: 366 ETIEEFKRSRVFAIVGCGGDRDKGKRPQMAKIAIDYATDPVFTSDNPRSEDPEAIIQDML 425
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AG LP + R+ A+ AV + GD++++AGKGHET
Sbjct: 426 AG-------------------LPANAVYQVRTDRKEAITYAVNEAQAGDVILIAGKGHET 466
Query: 358 YQIEGDKKEFFDDREESREALQYVDEL 384
YQI GD+ FDDR +REA++ + L
Sbjct: 467 YQIIGDQVLDFDDRAVAREAIEKKERL 493
>gi|399052143|ref|ZP_10741708.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevibacillus sp. CF112]
gi|433545446|ref|ZP_20501800.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Brevibacillus agri BAB-2500]
gi|398050009|gb|EJL42399.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevibacillus sp. CF112]
gi|432183269|gb|ELK40816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Brevibacillus agri BAB-2500]
Length = 528
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 221/378 (58%), Gaps = 23/378 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I GD E TTPDAV +Q +M T+ ++E SSH L GR
Sbjct: 165 QTGLIGTIHMRI-GDVTEEVKNTTPDAVDLQRSFRRMCDVHTDYAIIEVSSHALEQGRVR 223
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHRKVVNIDDPNATSF 120
D AVFTNLT+DH+D+H T E YR AK+ LFS++ DP R + V D A+
Sbjct: 224 GCDIHTAVFTNLTQDHLDYHKTMENYRYAKSLLFSQLGNHYDPNRLKTAVLNADDEASKL 283
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
A P V+T+ ++ + ADV E++ T T G + ++ L+G+ N+YN
Sbjct: 284 YATVTP-ARVLTYGID-QPADVRAKDIEITSKGTSFTAETFAGTIRLNLKLMGKFNVYNA 341
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA+AV +A G LEDI +E V V GR E +D Q F V+VDY+HTPD+L L +V
Sbjct: 342 LAAIAVTLAEGVSLEDIKASLEAVLGVNGRFESVDAGQPFAVLVDYSHTPDSLENALVTV 401
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
+E A + +VGC G+ DR KRP+M KIAT +D+T+LTSDNP +E+P I+DDMLAGV
Sbjct: 402 KEFAKGNVFCIVGCGGDRDRTKRPIMAKIATKYADMTVLTSDNPRSEEPQAIIDDMLAGV 461
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ + Y + + RR A+ A+++ + D++++AGKGHETYQI
Sbjct: 462 --------RDVDASRYTAVTD---------RREAIHHAISLAKADDVILIAGKGHETYQI 504
Query: 361 EGDKKEFFDDREESREAL 378
D+ FDDRE +REA+
Sbjct: 505 IKDQVLPFDDREVAREAI 522
>gi|152976276|ref|YP_001375793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cytotoxicus NVH 391-98]
gi|152025028|gb|ABS22798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cytotoxicus NVH
391-98]
Length = 491
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 221/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD TTPDA+ +Q +M+ + VME SSH L GR
Sbjct: 127 GHKTGLIGTINMKI-GDETFAVKNTTPDALTLQQAFHRMVEENVNSAVMEVSSHALDRGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYAVLNNDDAAT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++I + VVT+ ++ +DV ++ T + TPH +I+ L+G+ N+
Sbjct: 246 EAYIR--STAATVVTYGIDTH-SDVMAKDIVMTSGGTTFTLVTPHESKKITMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA A G+ G L+ I+ +E + V GR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNALAATAAGLVSGVSLQTIIDVLEHLTGVAGRFEVVDGGQDYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT+ + ILTSDNP +EDP ILDDML
Sbjct: 363 TTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATHAILTSDNPRSEDPQAILDDML 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV N+Y + R+ A+ A++ + D++++AGKGHET
Sbjct: 423 TGVKG----------NNYEVIVD----------RKKAIFHAISEAQAEDVIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>gi|313893650|ref|ZP_07827218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella sp. oral taxon 158 str. F0412]
gi|313441794|gb|EFR60218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella sp. oral taxon 158 str. F0412]
Length = 494
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 152/383 (39%), Positives = 223/383 (58%), Gaps = 25/383 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V I GD TTPD V +Q+++ +M+ G VME SSH LALGR
Sbjct: 130 GHKVGVIGTVHIMI-GDATYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
S V++D AVFTNLT+DH+DFH T E Y AK KLF ++ P + + ++NIDD
Sbjct: 189 VSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTKSGKGAIINIDDAYG 248
Query: 118 TSFIAQGNPDVPVVTFAME-NKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
+ + P++T++++ N + H + +++ ++ V+ ++ G N
Sbjct: 249 HRVVEK--TKAPIITYSIDGNGTLNAHDV--DMTPKSSRYTVSYDGHDYTVAMNTTGLFN 304
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN LAA+ + G +EDI + ++ AVPGR ELI+E Q F V+VDYAHTPD L +
Sbjct: 305 VYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHTPDGLENI 364
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L + + + RII V GC G+ D KRP+M +IA DV +TSDNP EDP+ I+ D+
Sbjct: 365 LQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPVQIVKDV 424
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AGV +E L+ E YY + + RR A++ A+ + GD+V++AGKGHE
Sbjct: 425 EAGV----KEGLR--EGSYYEVIVD---------RREAIQHAIQNAKPGDIVLIAGKGHE 469
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
YQI DK FDDREE+R AL+
Sbjct: 470 DYQILKDKTIHFDDREEARAALK 492
>gi|238019061|ref|ZP_04599487.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748]
gi|237864316|gb|EEP65606.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748]
Length = 494
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 221/382 (57%), Gaps = 23/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V I GD TTPD V +Q+++ +M+ G VME SSH LALGR
Sbjct: 130 GHKVGVIGTVHIMI-GDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
S V++D AVFTNLT+DH+DFH T E Y AK KLF ++ P + + ++NIDD
Sbjct: 189 VSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTKSGKGAIINIDDEYG 248
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
I + P++T++++ K ++ E++ ++ V+ ++ G N+
Sbjct: 249 HRVIEKTTA--PIITYSIDGK-GTLNAHDVEMTPKSSRYTVSYDGNDYTVAMNTTGLFNV 305
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ + G +EDI + ++ AVPGR ELI+E Q F V+VDYAHTPD L +L
Sbjct: 306 YNTLAAIGACLLEGISMEDIDKAMKTFSAVPGRFELIEEGQPFAVVVDYAHTPDGLENIL 365
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ + + RII V GC G+ D KRP+M +IA D+ +TSDNP EDP+ I+ D+
Sbjct: 366 QTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDIVYVTSDNPRTEDPVQIVKDVE 425
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV +E L+ E +Y + + RR A++ A+ + GD+V++AGKGHE
Sbjct: 426 VGV----KEGLR--EGSHYEVIVD---------RREAIQHAIQNAKPGDIVLIAGKGHED 470
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI DK FDDREE+R AL+
Sbjct: 471 YQILKDKTIHFDDREEARAALK 492
>gi|197116884|ref|YP_002137311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter bemidjiensis Bem]
gi|197086244|gb|ACH37515.1| UDP-N-acetylmuramylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter bemidjiensis Bem]
Length = 505
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/386 (40%), Positives = 226/386 (58%), Gaps = 19/386 (4%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ +L ++SY G+ + +P TTP++V +Q ++ +++ +G VME SSH L R
Sbjct: 128 GVPAAVLGTISYRF-GETNIPAPNTTPESVDLQAILRELVDHGARGAVMEVSSHALEQHR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPER----HRKVVNIDDPNA 117
FD+A+F+NLTRDH+D+H E Y +K +LF+ ++ P R VVN+DDP
Sbjct: 187 VDGCLFDVALFSNLTRDHLDYHLDMESYFKSKLRLFTDLLAPTAEKPLRRAVVNLDDPFG 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ PV+T++M K AD+ + E S+ + +NTP G + ++S LLGR N+
Sbjct: 247 PRIAEKAA--APVLTYSMTGK-ADISVAEAEFSVDGIRCRLNTPVGEISLASELLGRFNL 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YNIL+AV G+A+G E I GIE VPGR E ++ E+ V+VDYAHT DAL +L
Sbjct: 304 YNILSAVGAGLALGYSKEAIRAGIEGHKRVPGRLERVETEEGITVLVDYAHTGDALENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+V EL RIIT+ GC G+ D+GKRP+M +IA SD+ ++TSDNP EDP IL+D+
Sbjct: 364 STVSELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSDLAVITSDNPRTEDPQAILEDVR 423
Query: 298 AGVGWTMQEYLKYGENDY-YPPLPNG-HRLFLHDIRRVAVRCAVAMGEE--GDMVVVAGK 353
AG+ L G +Y L G H I A+ GD+V++AGK
Sbjct: 424 AGI-------LPLGLREYGLEELAAGFHEKGFATIESRRAAIRAALLAAHPGDIVLLAGK 476
Query: 354 GHETYQIEGDKKEFFDDREESREALQ 379
GHE YQI G +K FDDREE+ AL+
Sbjct: 477 GHEDYQIVGTEKFHFDDREEAAAALK 502
>gi|308173483|ref|YP_003920188.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens DSM 7]
gi|307606347|emb|CBI42718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens DSM 7]
Length = 490
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 221/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD TTP++V +Q KM E +ME SSH L+LGR
Sbjct: 128 GRQTGLIGTM-YIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVETAIMEVSSHALSLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T E+YR AK+ LFS++ H R V+N DD +
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKAS 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + ++T+ +EN ADV + E+S T + TP G +I+ L+GR N+
Sbjct: 247 AYF--ERVTAAHILTYGIEND-ADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A IA G P + I +EE+ V GR EL++ Q F V+VDYAHTPD+L +L
Sbjct: 304 YNVLAAAATAIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVVVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ +++ ++ VVGC G+ D+ KRP M +IA +D I TSDNP +EDPL IL DM
Sbjct: 364 NTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAILRDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV E YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 RGV-----------EGTYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 464 YQQIGNETFDFDDAEVAGRAI 484
>gi|387898096|ref|YP_006328392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens Y2]
gi|387172206|gb|AFJ61667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens Y2]
Length = 500
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 221/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 138 GRQTGLIGTM-YIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEVSSHALSLGR 196
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T E+YR AK+ LFS++ H R V+N DD +
Sbjct: 197 VHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKAS 256
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + ++T+ +EN ADV + E+S T + TP G +I+ L+GR N+
Sbjct: 257 AYF--EKVTAAHILTYGIEND-ADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNV 313
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A IA G P + I +EE+ V GR EL++ Q F VIVDYAHTPD+L +L
Sbjct: 314 YNVLAAAATAIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVIVDYAHTPDSLENVL 373
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ +++ ++ VVGC G+ D+ KRP M +IA +D I TSDNP +EDPL IL DM
Sbjct: 374 NTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAILRDME 433
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV E YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 434 RGV-----------EGTYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 473
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 474 YQQIGNETFDFDDAEVAGRAI 494
>gi|410667608|ref|YP_006919979.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Thermacetogenium phaeum DSM 12270]
gi|409105355|gb|AFV11480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Thermacetogenium phaeum DSM 12270]
Length = 495
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 225/385 (58%), Gaps = 31/385 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ + GD+K RTTP+++ +Q ++ +M+++G AV ME SSH L L R
Sbjct: 130 GEHTGLIGTI-WIKMGDDKQPVERTTPESLDLQRILREMVNSGISAVTMEVSSHALYLDR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
+E +FDI VFTNLT+DH+DFHG ++Y AK +LF + + ++ VVN DDP
Sbjct: 189 VAECEFDIGVFTNLTQDHLDFHGNLKDYLAAKMRLFQGLGEKRTKKRPSYAVVNCDDPAG 248
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + N VPV+T+ + ++ADV L+ + +V+ G + L G N+
Sbjct: 249 RAIVQ--NTKVPVITYGIR-EEADVRARDVRLTGEGSDFIVSCREGDIPFKVSLPGEFNV 305
Query: 178 YNILAAVAVGIAVGAP---LEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
+N LAA+ VG+ G P L+D++R E+ VPGR + +DE Q F VIVDYAHTPD L
Sbjct: 306 FNSLAAICVGLREGVPVPLLQDVLR---EIKGVPGRFQRVDEGQNFTVIVDYAHTPDGLE 362
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L + R +AP R+ITV GC G+ D GKRPLM +I+ + SD ++LTSDNP ED I+
Sbjct: 363 NVLRTARRIAPGRLITVFGCGGDRDAGKRPLMGRISGELSDYSVLTSDNPRTEDAESIIR 422
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
+ G+ K N Y + R +R A+ EGD+VV+AGKG
Sbjct: 423 MIEKGI--------KEVNNASYTVILE---------RYEGIRHALHYAREGDIVVIAGKG 465
Query: 355 HETYQIEGDKKEFFDDREESREALQ 379
HE YQI GD+ FDD + ++E LQ
Sbjct: 466 HENYQIIGDQVIPFDDYQVAKEILQ 490
>gi|384265102|ref|YP_005420809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|380498455|emb|CCG49493.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
Length = 490
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 221/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 128 GRQTGLIGTM-YIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEVSSHALSLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T E+YR AK+ LFS++ H R V+N DD +
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKAS 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + ++T+ +EN ADV + E+S T + TP G +I+ L+GR N+
Sbjct: 247 AYF--EKVTAAHILTYGIEND-ADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A IA G P + I +EE+ V GR EL++ Q F VIVDYAHTPD+L +L
Sbjct: 304 YNVLAAAATAIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVIVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ +++ ++ VVGC G+ D+ KRP M +IA +D I TSDNP +EDPL IL DM
Sbjct: 364 NTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAILRDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV E YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 RGV-----------EGTYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 464 YQQIGNETFDFDDAEVAGRAI 484
>gi|374710331|ref|ZP_09714765.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Sporolactobacillus inulinus CASD]
Length = 491
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 154/384 (40%), Positives = 231/384 (60%), Gaps = 32/384 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNK-LESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G+ TG++ ++ +H NK + TTP+ ++ +A+M G +VVMEASS+ L G
Sbjct: 127 GINTGLIGTMG--MHYKNKSIPVQNTTPEVHLIHQNLAEMKAEGAASVVMEASSNALYDG 184
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRKVVNIDDPN 116
R F++ +FTNLT DH+D HGT ++Y AK+ LFS++ + ++ V+N+DDP
Sbjct: 185 RLHGCAFNVGIFTNLTEDHLDLHGTMKDYMYAKSLLFSQLGNCYGTGQKKAAVLNVDDP- 243
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQ-VLVNTPHGILEISSGLLGRH 175
S + + V+T+ + N AD +++ T+ VL N H +S L+G+
Sbjct: 244 -ASEVYKHMTASHVITYGI-NHSADFRAKAIKINPSGTEFVLENAGHS-YPVSMKLIGKF 300
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
++YN+LAA+A G LE ++ +E++ V GR E +D Q F VIVDY+HTPD+L
Sbjct: 301 SVYNVLAALAACSVSGIALEAMIHTVEQIKGVAGRFEPVDAGQDFTVIVDYSHTPDSLEN 360
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L +++E A +R+IT+ GC G+ +RGKRP+M KIA D SD+ ILT+DNP EDP IL +
Sbjct: 361 ALSTIKEFARKRVITIAGCGGDRERGKRPIMAKIAVDNSDLAILTADNPRTEDPEQILLE 420
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
M AGV T ++Y K +P+ RR A+R AV E GD++++AGKGH
Sbjct: 421 MEAGV--TGRDYRK---------IPD---------RREAIRYAVDEAESGDILLIAGKGH 460
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
E YQI G K FDDREE+R+A++
Sbjct: 461 EDYQIIGTTKHHFDDREEARKAIR 484
>gi|295696467|ref|YP_003589705.1| UDP-N-acetylmuramyl tripeptide synthetase [Kyrpidia tusciae DSM
2912]
gi|295412069|gb|ADG06561.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kyrpidia tusciae DSM
2912]
Length = 500
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 160/396 (40%), Positives = 219/396 (55%), Gaps = 34/396 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ I GD + TTP+AV +Q L A+M G VME SSH L L R
Sbjct: 128 GARTGLIGTIQTRI-GDRSSGAVNTTPEAVELQRLFAQMRDAGVSHAVMEVSSHALELDR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM------VDPERHRKVVNIDDP 115
+ F AVFTNLT+DH+DFHG+ E YR AK KLF+R+ ++ VVN+DDP
Sbjct: 187 VAGTRFHTAVFTNLTQDHLDFHGSMEAYREAKGKLFARLGNEYGDTRADQAFAVVNLDDP 246
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
Q VT+ + ++ AD+ + E+ + + + L GR
Sbjct: 247 VGKWMARQTTAQT--VTYGV-DRPADLRAREVEVDTRGVRFVAEIEGRRTRVHVPLPGRF 303
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
++YN LAA+ G G L+ + + V VPGR E +D Q FGV+VDYAHTPD+L
Sbjct: 304 SVYNTLAAMGAGWIQGLDLDWMADQLARVSGVPGRMERVDAGQPFGVVVDYAHTPDSLDN 363
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L ++RE+A R+I V GC G+ DR KRPLM +IA ++D ILTSDNP EDP ILDD
Sbjct: 364 VLQALREVASGRLIVVFGCGGDRDRTKRPLMGRIAYTRADYAILTSDNPRTEDPERILDD 423
Query: 296 MLAG---VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ AG +G Y + + R A+R A+ + E D+V++AG
Sbjct: 424 IEAGLREIGADTSRYERISD------------------RTEAIRRAIHLAGEKDVVLIAG 465
Query: 353 KGHETYQIEGDKKEFFDDREESREALQYVDELHQAG 388
KGHETYQI G +K FDDR E+R+AL D L+ G
Sbjct: 466 KGHETYQIIGRRKFPFDDRVEARKAL---DALYTPG 498
>gi|385264645|ref|ZP_10042732.1| MurE [Bacillus sp. 5B6]
gi|385149141|gb|EIF13078.1| MurE [Bacillus sp. 5B6]
Length = 500
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 221/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 138 GRQTGLIGTM-YIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEVSSHALSLGR 196
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T E+YR AK+ LFS++ H R V+N DD +
Sbjct: 197 VHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKAS 256
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + ++T+ +EN ADV + E+S T + TP G +I+ L+GR N+
Sbjct: 257 AYF--EKVTAAHILTYGIEND-ADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNV 313
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A IA G P + I +EE+ V GR EL++ Q F V+VDYAHTPD+L +L
Sbjct: 314 YNVLAAAATAIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVVVDYAHTPDSLENVL 373
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ +++ ++ VVGC G+ D+ KRP M +IA +D I TSDNP +EDPL IL DM
Sbjct: 374 NTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAILRDME 433
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV E YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 434 RGV-----------EGTYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 473
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 474 YQQIGNETFDFDDAEVAGRAI 494
>gi|452855468|ref|YP_007497151.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079728|emb|CCP21485.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
Length = 490
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 221/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 128 GRQTGLIGTM-YIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEVSSHALSLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T E+YR AK+ LFS++ H R V+N DD +
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKAS 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + ++T+ +EN ADV + E+S T + TP G +I+ L+GR N+
Sbjct: 247 AYF--EKVTAAHILTYGIEND-ADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A IA G P + I +EE+ V GR EL++ Q F V+VDYAHTPD+L +L
Sbjct: 304 YNVLAAAATAIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVVVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ +++ ++ VVGC G+ D+ KRP M +IA +D I TSDNP +EDPL IL DM
Sbjct: 364 NTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAILRDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV E YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 RGV-----------EGTYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 464 YQQIGNETFDFDDAEVAGRAI 484
>gi|410460850|ref|ZP_11314518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus azotoformans LMG 9581]
gi|409926492|gb|EKN63658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus azotoformans LMG 9581]
Length = 491
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 225/381 (59%), Gaps = 25/381 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y G+ ++ TTP+++++Q M+ + ME SSH L +GR
Sbjct: 130 GEQTGLIGTM-YIKIGNQTIDVKNTTPESLVLQKTFKDMVEHKVTTATMEVSSHALDMGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHRKVVNIDDPNAT 118
D+DIAV TNLT+DH+D+H T E Y AK LF+++ ++ E+ + + +D + +
Sbjct: 189 VRGCDYDIAVLTNLTQDHLDYHKTMENYARAKGILFAQLGSSINYEKPKFAILNNDDSVS 248
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
+ ++T+ ++++ +DV +S T + TP G EIS L+G+ ++Y
Sbjct: 249 ELYKKLTAGAQILTYGIDSE-SDVRATNINMSGQGTSFSLTTPVGEAEISMKLVGKFSVY 307
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N+LAAV+ IA P I+ +E + V GR EL++E Q + VIVDY+HTPD+L L
Sbjct: 308 NVLAAVSTAIAAKVPFRVIIDTVENLQGVAGRFELVNENQDYTVIVDYSHTPDSLENALT 367
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+V++ A ++ +VGC G+ D+ KRP+M +IA SDV I TSDNP EDP+ IL DM A
Sbjct: 368 TVKQFAKGKVYVIVGCGGDRDKTKRPIMAQIAVKNSDVAIFTSDNPRTEDPVQILKDMEA 427
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GV GE +++F+ R+ A+ AV + E+ D++++AGKGHETY
Sbjct: 428 GV---------QGEQ---------YQVFVD--RKEAIYYAVGIAEKDDIILIAGKGHETY 467
Query: 359 QIEGDKKEFFDDREESREALQ 379
QI G + FDDR+ +REA++
Sbjct: 468 QIVGKQILDFDDRKIAREAIK 488
>gi|375362165|ref|YP_005130204.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|394993855|ref|ZP_10386595.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. 916]
gi|421731811|ref|ZP_16170934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum M27]
gi|429505072|ref|YP_007186256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|451347110|ref|YP_007445741.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens IT-45]
gi|371568159|emb|CCF05009.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|393805426|gb|EJD66805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. 916]
gi|407074024|gb|EKE47014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum M27]
gi|429486662|gb|AFZ90586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|449850868|gb|AGF27860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens IT-45]
Length = 490
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 221/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 128 GRQTGLIGTM-YIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEVSSHALSLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T E+YR AK+ LFS++ H R V+N DD +
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKAS 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + ++T+ +EN ADV + E+S T + TP G +I+ L+GR N+
Sbjct: 247 AYF--EKVTAAHILTYGIEND-ADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A IA G P + I +EE+ V GR EL++ Q F V+VDYAHTPD+L +L
Sbjct: 304 YNVLAAAATAIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVVVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ +++ ++ VVGC G+ D+ KRP M +IA +D I TSDNP +EDPL IL DM
Sbjct: 364 NTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAILRDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV E YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 RGV-----------EGTYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 464 YQQIGNETFDFDDAEVAGRAI 484
>gi|431794714|ref|YP_007221619.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784940|gb|AGA70223.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 495
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 211/379 (55%), Gaps = 24/379 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I G +L RTTP+A+ +Q L+ +M+ G + VME SSH L LGR
Sbjct: 134 GKKVGLIGTLGARIAG-RELPGNRTTPEAIDLQKLLKEMVDEGVQLAVMEVSSHALDLGR 192
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
+FD +FTNLT+DH+D+H T EEY AKAKLFS + + + VVN DDP A +
Sbjct: 193 VRGCEFDAGIFTNLTQDHLDYHKTMEEYLQAKAKLFSGLTGAKSPKIGVVNGDDPAAETL 252
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I PV+T+ + D EL+ + V+ +++ G ++YN
Sbjct: 253 IKVAT--APVITYGVNAAHLDYRASDIELTAHGVRFTVHFKGQTEQVNYATPGMFSVYNA 310
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA A G+ G E + + + +V VPGR E I Q F VIVDYAHTPD L+ + +
Sbjct: 311 LATFAWGVESGRSPELVKKALADVQGVPGRFESIRMGQPFQVIVDYAHTPDGLANVCQAA 370
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
E P R+ITV GC G+ D+GKRP M IA SD I+TSDNP EDP I+ D+L G+
Sbjct: 371 LEFTPGRLITVFGCGGDRDKGKRPQMGAIAEQLSDHVIVTSDNPRTEDPRQIIQDILEGI 430
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
E + Y N R+ A+ CA+ + +EGD V++AGKGHE YQI
Sbjct: 431 -----EGIDYTANVK---------------RQEAIECALILAKEGDTVLIAGKGHEDYQI 470
Query: 361 EGDKKEFFDDREESREALQ 379
G + FDDRE +REAL+
Sbjct: 471 IGKEVLPFDDREVAREALR 489
>gi|345021958|ref|ZP_08785571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Ornithinibacillus scapharcae TW25]
Length = 489
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 151/382 (39%), Positives = 219/382 (57%), Gaps = 26/382 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G TG++ ++ I G+ TTPDA+ +Q KM+ + E V+ME SSH L G
Sbjct: 127 FGRTTGVIGTIQMKI-GNKVFPIDNTTPDALFLQQTFRKMIDSRVEQVIMEVSSHALDQG 185
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRKVVNIDDPN 116
R DFDIA+FTNLT+DH+D+H + ++Y AK+ LF+++ + R ++N DDP
Sbjct: 186 RVYGCDFDIAIFTNLTQDHLDYHDSMDDYLRAKSLLFAQLGNQYHKDNRKFAIINQDDPV 245
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
+ + +V VT+ M +K + V L+ T L+ TP+G I+S L+G+ N
Sbjct: 246 SQKLMRSTAQNV--VTYGM-HKDSMVRAKSIRLTPTGTYFLLCTPNGNTAINSKLIGKFN 302
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+ N+LAA A I+ G PL I +E + + GR EL+ F VIVDYAHTPD+L +
Sbjct: 303 VSNMLAAAAAAISYGIPLSVIKEALESISGINGRFELVQHHHPFSVIVDYAHTPDSLENV 362
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L ++R+ A ++ VVGC G+ DR KRPLM KIA SDV I TSDNP EDP IL+DM
Sbjct: 363 LTTIRDFAKGKVYVVVGCGGDRDRTKRPLMAKIAVQYSDVAIFTSDNPRTEDPKIILEDM 422
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ G+ E++ + + + R+ A+ A+ E D++++AGKGHE
Sbjct: 423 IDGLSQ---------EDEMFEVIID---------RKAAIHHAIQQASEDDIILIAGKGHE 464
Query: 357 TYQIEGDKKEFFDDREESREAL 378
TYQ G +K FDDRE + EAL
Sbjct: 465 TYQQIGHRKYHFDDREVALEAL 486
>gi|289435379|ref|YP_003465251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171623|emb|CBH28169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 491
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 144/382 (37%), Positives = 219/382 (57%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q +ML G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY AK+ LF+++ + V+N DD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNPKIAVLNADDEES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q V+TF ++ + AD E++ + + TP G ++ ++G ++
Sbjct: 246 VRM--QTATAAHVITFGIK-ENADFRATNIEITSHGSTFNLTTPAGKFKLKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ PLE+ + +E + V GR EL++ Q F VIVDY+HTPD L +L
Sbjct: 303 YNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNAGQDFPVIVDYSHTPDGLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E A +R+ VVGC G+ D+GKRP M KIA + + TSDNP +E+P I++DM+
Sbjct: 363 QTIDEFANKRVFVVVGCGGDRDKGKRPQMAKIAVQYATNPVFTSDNPRSENPRTIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV P +H+ RR A++ A++ E GD++++AGKGHE
Sbjct: 423 KGV-------------------PESDSYVVHENRRDAIQYAISEAEAGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI GD+ FDDR E+R A++
Sbjct: 464 YQIIGDEVIDFDDRVEARLAIE 485
>gi|39998164|ref|NP_954115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter sulfurreducens PCA]
gi|81701142|sp|Q748D2.1|MURE_GEOSL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|39985110|gb|AAR36465.1| UDP-N-acetylmuramylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter sulfurreducens PCA]
Length = 509
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 159/389 (40%), Positives = 222/389 (57%), Gaps = 19/389 (4%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ +L ++SY G + +P TTP++V +Q + ++ G +AVVME SSH L R
Sbjct: 129 GIPAAVLGTISYRF-GSKLVPAPHTTPESVELQATIRDLVDEGAKAVVMEVSSHALEQRR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPE----RHRKVVNIDDPNA 117
FD+AVFTNLTRDH+D+H E Y +KA+LF+ +V P+ R +N DD
Sbjct: 188 VDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTELVAPDGVKPRRAAAINRDDSYG 247
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNT---PHGILEISSGLLGR 174
+ PV+++ + A ++ E +F + T P G S LLGR
Sbjct: 248 ARLVETAV--APVISYGLAADAA----VRAENVVFSVDGIAGTLVTPFGTAPFHSHLLGR 301
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+YNILAAVA G+ +G L+ I+ GIE VPGR E + E+ V+VDYAHT DAL
Sbjct: 302 FNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERVHNERGVTVLVDYAHTGDALE 361
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L +V ELA RIITV GC G+ DRGKRP+M +I+ S +TI+TSDNP E+P I+
Sbjct: 362 NVLKTVSELATGRIITVFGCGGDRDRGKRPVMAEISGRYSHLTIVTSDNPRTEEPAAIIK 421
Query: 295 DMLAG-VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
++L G + ++EY N + + HD R+A AVA GD+V++AGK
Sbjct: 422 EVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAATVAVA----GDIVLLAGK 477
Query: 354 GHETYQIEGDKKEFFDDREESREALQYVD 382
GHE YQI G +K FDDREE+ A + D
Sbjct: 478 GHEDYQIIGTEKFHFDDREEAIAAFRSSD 506
>gi|384159499|ref|YP_005541572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens TA208]
gi|384164064|ref|YP_005545443.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens LL3]
gi|384168550|ref|YP_005549928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens XH7]
gi|328553587|gb|AEB24079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens TA208]
gi|328911619|gb|AEB63215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens LL3]
gi|341827829|gb|AEK89080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens XH7]
Length = 490
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 221/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 128 GRQTGLIGTM-YIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEVSSHALSLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T E+YR AK+ LFS++ H R V+N DD +
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKAS 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + ++T+ +EN ADV + E+S T + TP G +I+ L+GR N+
Sbjct: 247 AYF--ERVTAAHILTYGIEND-ADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A IA G P + I +EE+ V GR EL++ Q F V+VDYAHTPD+L +L
Sbjct: 304 YNVLAAAATAIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVVVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ +++ ++ VVGC G+ D+ KRP M +IA +D I TSDNP +EDPL IL DM
Sbjct: 364 NTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAILRDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV E YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 RGV-----------EGTYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 464 YQQIGNETFDFDDAEVAGRAI 484
>gi|410583574|ref|ZP_11320680.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermaerobacter
subterraneus DSM 13965]
gi|410506394|gb|EKP95903.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermaerobacter
subterraneus DSM 13965]
Length = 500
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 165/376 (43%), Positives = 215/376 (57%), Gaps = 30/376 (7%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ +V I G L RTTP+A +Q L+A M G VME SSH LAL R +
Sbjct: 132 TGLIGTVHNIIAG-RSLPVERTTPEAADLQKLLAAMRDEGMTHAVMEVSSHALALQRVAG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM--------VDPERHRKVVNIDDPN 116
FD+ VFTNLT+DH+DFH + E+Y AKA+LFSR+ P V+N DDP
Sbjct: 191 CAFDVGVFTNLTQDHLDFHASMEDYAAAKARLFSRLGRNEIPGTTKPGPKAAVINADDPW 250
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
A+ N PVVT+ + N+ AD+ + E+ + ++ +P G + L GR N
Sbjct: 251 GEFMAARSN--APVVTYGL-NRPADITARQVEVEPGGIRFILVSPKGEAPVRLRLTGRFN 307
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN LAA G+A+G + RG+E + AVPGR E ID Q F VIVDYAHTPD L +
Sbjct: 308 VYNALAAAGAGLALGLDPATVARGLESLQAVPGRLERIDRGQPFAVIVDYAHTPDGLDNV 367
Query: 237 LDSVRELAPR-RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L SVRELA + R+I V GC G+ DRGKRP M I+ +D T+LTSDNP +EDP ILDD
Sbjct: 368 LRSVRELAGQGRVICVFGCGGDRDRGKRPQMGAISARLADYTVLTSDNPRSEDPEAILDD 427
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ AGV +P + D R A+R A+ + GD+VV+AGKGH
Sbjct: 428 IEAGVRR----------------VPGAAYERVTD-RAAAIRRALELARPGDVVVIAGKGH 470
Query: 356 ETYQIEGDKKEFFDDR 371
E YQI D+ FDDR
Sbjct: 471 EDYQIFADRTIHFDDR 486
>gi|409913521|ref|YP_006891986.1| UDP-N-acetylmuramylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter sulfurreducens KN400]
gi|298507102|gb|ADI85825.1| UDP-N-acetylmuramylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter sulfurreducens KN400]
Length = 509
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 159/389 (40%), Positives = 222/389 (57%), Gaps = 19/389 (4%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ +L ++SY G + +P TTP++V +Q + ++ G +AVVME SSH L R
Sbjct: 129 GIPAAVLGTISYRF-GSKLVPAPHTTPESVELQATIRDLVDEGAKAVVMEVSSHALEQRR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPE----RHRKVVNIDDPNA 117
FD+AVFTNLTRDH+D+H E Y +KA+LF+ +V P+ R +N DD
Sbjct: 188 VDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTELVAPDGVKPRRAAAINRDDSYG 247
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNT---PHGILEISSGLLGR 174
+ PV+++ + A ++ E +F + T P G S LLGR
Sbjct: 248 ARLVETAVA--PVISYGLAADAA----VRAENVVFSVDGIAGTLVTPFGTALFHSHLLGR 301
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+YNILAAVA G+ +G L+ I+ GIE VPGR E + E+ V+VDYAHT DAL
Sbjct: 302 FNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERVHNERGVTVLVDYAHTGDALE 361
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L +V ELA RIITV GC G+ DRGKRP+M +I+ S +TI+TSDNP E+P I+
Sbjct: 362 NVLKTVSELATGRIITVFGCGGDRDRGKRPVMAEISGRYSHLTIVTSDNPRTEEPAAIIK 421
Query: 295 DMLAG-VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
++L G + ++EY N + + HD R+A AVA GD+V++AGK
Sbjct: 422 EVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAATVAVA----GDIVLLAGK 477
Query: 354 GHETYQIEGDKKEFFDDREESREALQYVD 382
GHE YQI G +K FDDREE+ A + D
Sbjct: 478 GHEDYQIIGTEKFHFDDREEAIAAFRSSD 506
>gi|319646105|ref|ZP_08000335.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus sp. BT1B_CT2]
gi|423682058|ref|ZP_17656897.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus licheniformis WX-02]
gi|317391855|gb|EFV72652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus sp. BT1B_CT2]
gi|383438832|gb|EID46607.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus licheniformis WX-02]
Length = 488
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ IH D E+ TTP++V +Q KM+ G + VME SSH L +GR
Sbjct: 128 GSRTGLIGTMYTKIH-DETFEAKNTTPESVTLQKTFRKMVDQGVDTAVMEVSSHALHMGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+DIA FTNLT+DH+D+H T EEY++AK+ LFS++ H V+N DDP A
Sbjct: 187 VHGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFSQLGGSFNHETPKWAVLNADDP-A 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+++ AQ ++T+ ++N ADV +++ T + TP G +++ L+G N+
Sbjct: 246 SAYFAQVT-SAHLLTYGIQND-ADVMAENIKMAPKGTTFDLVTPKGSAQVTIPLVGLFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+L A A+ IA P I GIE + V GR EL+D Q F VIVDYAHTPD+L +L
Sbjct: 304 YNVLTAAAIAIAADIPFATITEGIEGLKGVRGRFELVDAGQDFPVIVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ R L ++ VVGC G+ D+ KRP M KIA D +D + T+DNP +E+PL IL+DM
Sbjct: 364 NTCRGLTEGKLFVVVGCGGDRDKTKRPKMAKIAVDLADEPVFTADNPRSENPLAILNDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV + YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 EGV-----------KGAYYHSIVN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G + FDD E ++ A+
Sbjct: 464 YQQIGGQTFDFDDAEVAKRAI 484
>gi|52080120|ref|YP_078911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|404489009|ref|YP_006713115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|81385639|sp|Q65JY4.1|MURE_BACLD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|52003331|gb|AAU23273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52347996|gb|AAU40630.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Bacillus licheniformis DSM 13 = ATCC 14580]
Length = 488
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ IH D E+ TTP++V +Q KM+ G + VME SSH L +GR
Sbjct: 128 GSRTGLIGTMYTKIH-DETFEAKNTTPESVTLQKTFRKMVDQGVDTAVMEVSSHALHMGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+DIA FTNLT+DH+D+H T EEY++AK+ LFS++ H V+N DDP A
Sbjct: 187 VHGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFSQLGGSFNHETPKWAVLNADDP-A 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+++ AQ ++T+ ++N ADV +++ T + TP G +++ L+G N+
Sbjct: 246 SAYFAQVT-SAHLLTYGIQND-ADVMAENIKMAPKGTTFDLVTPKGSAQVTIPLVGLFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+L A A+ IA P I GIE + V GR EL+D Q F VIVDYAHTPD+L +L
Sbjct: 304 YNVLTAAAIAIAADIPFATITEGIEGLKGVRGRFELVDAGQDFPVIVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ R L ++ VVGC G+ D+ KRP M KIA D +D + T+DNP +E+PL IL+DM
Sbjct: 364 NTCRGLTEGKLFVVVGCGGDRDKTKRPKMAKIAVDLADEPVFTADNPRSENPLAILNDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV + YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 EGV-----------KGAYYHSIVN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G + FDD E ++ A+
Sbjct: 464 YQQIGGQTFDFDDAEVAKRAI 484
>gi|422419661|ref|ZP_16496616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria seeligeri FSL N1-067]
gi|313632492|gb|EFR99506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria seeligeri FSL N1-067]
Length = 491
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 144/382 (37%), Positives = 218/382 (57%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q +ML G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY AK+ LF+++ + V+N DD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHASNPKIAVLNADDEES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q V+TF ++ + AD E++ + + TP G ++ ++G ++
Sbjct: 246 VRM--QTATAAHVITFGIK-ENADFRATNIEITSHGSTFDLTTPAGKFKLKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ PLE+ + +E + V GR EL++ Q F VIVDY+HTPD L +L
Sbjct: 303 YNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNAGQDFPVIVDYSHTPDGLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E A R+ VVGC G+ D+GKRP M KIA + + TSDNP +E+P I++DM+
Sbjct: 363 QTIDEFANNRVFVVVGCGGDRDKGKRPQMAKIAVQYATNPVFTSDNPRSENPRTIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV P +H+ RR A++ A++ E GD++++AGKGHE
Sbjct: 423 KGV-------------------PESDSYVVHENRRDAIQYAISEAEAGDVILIAGKGHEN 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI GD+ FDDR E+R A++
Sbjct: 464 YQIIGDEVINFDDRVEARLAIE 485
>gi|423098937|ref|ZP_17086645.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Listeria innocua ATCC 33091]
gi|370794764|gb|EHN62527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Listeria innocua ATCC 33091]
Length = 494
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 145/382 (37%), Positives = 219/382 (57%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 130 GEQTGLIGTM-YRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY AK+ LF+++ + V+N DD +
Sbjct: 189 VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKIAVLNADDKES 248
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q ++TF ++ + AD +++ + + TP G + ++G ++
Sbjct: 249 VRM--QTATAAHIITFGIK-EPADFSASNIQITSHGSTFDLKTPVGDFSLKIKMIGNFSV 305
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+ + + +E + V GR EL++ Q F VIVDY+HTPD+L +L
Sbjct: 306 YNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAGQDFPVIVDYSHTPDSLLNVL 365
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +EDP I++DM+
Sbjct: 366 QTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSEDPHAIIEDMI 425
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV P +H+ RR A+R AV M E GD++++AGKGHE
Sbjct: 426 QGV-------------------PGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKGHED 466
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 467 YQVIGDEVIDFDDRVEARIAIE 488
>gi|78044715|ref|YP_360893.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Carboxydothermus hydrogenoformans Z-2901]
gi|77996830|gb|ABB15729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Carboxydothermus hydrogenoformans Z-2901]
Length = 492
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 152/380 (40%), Positives = 216/380 (56%), Gaps = 23/380 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G +TG++ ++ Y GD L TTPDA+ +Q L A+M+ + V ME SSH L
Sbjct: 131 FGYKTGLIGTI-YNRIGDKILPVTNTTPDALSLQRLFAEMVKSEVSHVAMEVSSHALVQK 189
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R +DF VFTNLT+DH+DFH + E Y NAK +LF + + + V+N DD
Sbjct: 190 RVLGIDFKTGVFTNLTQDHLDFHESMENYFNAKKELFKILAEQKALPGVINKDDFYGQRI 249
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ + P VT+ ++ ++AD+ EL+ T + + LLG N+YNI
Sbjct: 250 LKEVAH--PFVTYGIK-EQADITAKNVELTNSGTAFTLCYQEEEYPVKVKLLGLFNVYNI 306
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAAV + +G L DIV+ + ++ VPGR ELIDE Q F VIVDYAHTPD L +L S
Sbjct: 307 LAAVGTLLTLGFSLPDIVKNLPLLNPVPGRFELIDEGQDFAVIVDYAHTPDGLENILKSA 366
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R + P R+I V GC G+ D+ KRP M KI+ +D+TI+TSDNP EDP I++++
Sbjct: 367 RAITPGRVIAVFGCGGDRDKTKRPKMGKISATLADITIITSDNPRTEDPEAIINEI---- 422
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDI-RRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
E ++ LP +L ++ R+ A++ A+ + + GD VV+AGKGHE YQ
Sbjct: 423 -----------EKGFFDALPGK---YLKEVDRKKAIKTALLLAKPGDTVVIAGKGHEDYQ 468
Query: 360 IEGDKKEFFDDREESREALQ 379
I G K FDDR +RE L+
Sbjct: 469 IIGTTKYPFDDRVVAREILR 488
>gi|422422752|ref|ZP_16499705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase, partial [Listeria seeligeri FSL S4-171]
gi|313637026|gb|EFS02597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria seeligeri FSL S4-171]
Length = 440
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 144/382 (37%), Positives = 218/382 (57%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q +ML G VME SSH L GR
Sbjct: 76 GEQTGLIGTM-YRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVMEVSSHALVQGR 134
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY AK+ LF+++ + V+N DD +
Sbjct: 135 VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHASNPKIAVLNADDEES 194
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q V+TF ++ + AD E++ + + TP G ++ ++G ++
Sbjct: 195 VRM--QTATAAHVITFGIK-ENADFRATNIEITSHGSTFNLTTPAGKFKLKIKMIGNFSV 251
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ PLE+ + +E + V GR EL++ Q F VIVDY+HTPD L +L
Sbjct: 252 YNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNAGQDFPVIVDYSHTPDGLLNVL 311
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E A R+ VVGC G+ D+GKRP M KIA + + TSDNP +E+P I++DM+
Sbjct: 312 QTIDEFANNRVFVVVGCGGDRDKGKRPQMAKIAVQYATNPVFTSDNPRSENPRTIIEDMI 371
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV P +H+ RR A++ A++ E GD++++AGKGHE
Sbjct: 372 KGV-------------------PESDSYVVHENRRDAIQYAISEAEAGDVILIAGKGHED 412
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI GD+ FDDR E+R A++
Sbjct: 413 YQIIGDEVINFDDRLEARLAIE 434
>gi|16801210|ref|NP_471478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria innocua Clip11262]
gi|21362704|sp|Q929X9.1|MURE_LISIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|16414658|emb|CAC97374.1| murE [Listeria innocua Clip11262]
Length = 491
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 145/382 (37%), Positives = 219/382 (57%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY AK+ LF+++ + V+N DD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKIAVLNADDKES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q ++TF ++ + AD +++ + + TP G + ++G ++
Sbjct: 246 VRM--QTATAAHIITFGIK-EPADFSASNIQITSHGSTFDLKTPVGDFALKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+ + + +E + V GR EL++ Q F VIVDY+HTPD+L +L
Sbjct: 303 YNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAGQDFPVIVDYSHTPDSLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +EDP I++DM+
Sbjct: 363 QTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSEDPHAIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV P +H+ RR A+R AV M E GD++++AGKGHE
Sbjct: 423 QGV-------------------PGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 464 YQVIGDEVIDFDDRVEARIAIE 485
>gi|332799089|ref|YP_004460588.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Tepidanaerobacter acetatoxydans Re1]
gi|332696824|gb|AEE91281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Tepidanaerobacter acetatoxydans Re1]
Length = 482
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 144/382 (37%), Positives = 227/382 (59%), Gaps = 35/382 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G+ TG++ ++ ++ + KL + TTP+++ + L +KM+ E + ME SSH L L
Sbjct: 128 IGICTGIIGTIGNVLN-NRKLPTSHTTPESLELNQLFSKMVEENIEYLAMEVSSHSLKLQ 186
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + FD+ VFTNLT+DH+DFH T E+Y N+K KLFS + + V+NIDD +
Sbjct: 187 RVEGIKFDVGVFTNLTQDHLDFHKTFEDYFNSKKKLFS-----QSKQAVINIDDESGKRL 241
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQ---VLVNTPHGILEISSGLLGRHNI 177
++ N +P T+ ++ KKAD+ ++ V N + + + GL ++
Sbjct: 242 LSIIN--IPRYTYGLD-KKADLRAENIRMTANGVSYDLVFRNKIYPVFYSTPGLF---SV 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ G+A+G P++D++ +++ VPGR EL++ Q VIVDYAH PD L +L
Sbjct: 296 YNSLAAITAGVALGFPIDDLINTLKKAKGVPGRFELVENNQGIIVIVDYAHKPDGLKNVL 355
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++RE +IITV GC G+ D+GKRP+M KI+++ SD TI+TSDNP +E P I++ +
Sbjct: 356 LTIREFCTGKIITVFGCGGDRDKGKRPIMGKISSELSDYTIITSDNPRSEKPEAIIEQIE 415
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
+G+ G+N Y + R A++ A+++ ++GD V++AGKGHET
Sbjct: 416 SGI---------IGDN--YEKITE---------RAEAIKKAISIAKKGDAVLIAGKGHET 455
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI DK FDDRE ++E L
Sbjct: 456 YQIFNDKIIHFDDREVAKECLS 477
>gi|422416567|ref|ZP_16493524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria innocua FSL J1-023]
gi|313622986|gb|EFR93282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria innocua FSL J1-023]
Length = 491
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 218/382 (57%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY AK+ LF+++ + V+N DD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKIAVLNADDKES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q V+TF ++ + AD +++ + + TP G + ++G +I
Sbjct: 246 VRM--QTATAAHVITFGIK-EPADFSASNIQITSHGSTFDLKTPVGDFSLKIKMIGNFSI 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+ + + +E + V GR EL++ Q F VIVDY+HTPD+L +L
Sbjct: 303 YNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAGQDFPVIVDYSHTPDSLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +EDP I+ DM+
Sbjct: 363 QTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSEDPHAIIADMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV P +H+ RR A+R A+ M E GD++++AGKGHE
Sbjct: 423 QGV-------------------PGSDSYVVHENRRDAIRYAINMAEAGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 464 YQVIGDEVIDFDDRVEARIAIE 485
>gi|438002200|ref|YP_007271943.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Tepidanaerobacter acetatoxydans Re1]
gi|432178994|emb|CCP25967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Tepidanaerobacter acetatoxydans Re1]
Length = 482
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/382 (37%), Positives = 227/382 (59%), Gaps = 35/382 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G+ TG++ ++ ++ + KL + TTP+++ + L +KM+ E + ME SSH L L
Sbjct: 128 IGICTGIIGTIGNVLN-NRKLPTSHTTPESLELNQLFSKMVEENIEYLAMEVSSHSLKLQ 186
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + FD+ VFTNLT+DH+DFH T E+Y N+K KLFS + + V+NIDD +
Sbjct: 187 RVEGIKFDVGVFTNLTQDHLDFHKTFEDYFNSKKKLFS-----QSKQAVINIDDESGKRL 241
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQ---VLVNTPHGILEISSGLLGRHNI 177
++ N +P T+ ++ KKAD+ ++ V N + + + GL ++
Sbjct: 242 LSIIN--IPRYTYGLD-KKADLRAENIRMTANGVSYDLVFRNKIYPVFYSTPGLF---SV 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ G+A+G P++D++ +++ VPGR EL++ Q VIVDYAH PD L +L
Sbjct: 296 YNSLAAITAGVALGFPIDDLINTLKKAKGVPGRFELVENNQGIIVIVDYAHKPDGLKNVL 355
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++RE +IITV GC G+ D+GKRP+M KI+++ SD TI+TSDNP +E P I++ +
Sbjct: 356 LTIREFCTGKIITVFGCGGDRDKGKRPIMGKISSELSDYTIITSDNPRSEKPEAIIEQIE 415
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
+G+ G+N Y + R A++ A+++ ++GD V++AGKGHET
Sbjct: 416 SGI---------IGDN--YEKITE---------RAEAIKKAISIAKKGDAVLIAGKGHET 455
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI DK FDDRE ++E L
Sbjct: 456 YQIFNDKIIHFDDREVAKECLS 477
>gi|416998999|ref|ZP_11939668.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella parvula ACS-068-V-Sch12]
gi|333977152|gb|EGL78011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella parvula ACS-068-V-Sch12]
Length = 494
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 148/383 (38%), Positives = 220/383 (57%), Gaps = 25/383 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V I GD TTPD V +Q+++ +M+ G VME SSH LALGR
Sbjct: 130 GHKVGVIGTVHIMI-GDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
S V++D A+FTNLT+DH+DFH T E Y AK KLF ++ P + + V+NIDD
Sbjct: 189 VSGVEYDTAIFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQIKSGKGAVINIDDAYG 248
Query: 118 TSFIAQGNPDVPVVTFAME-NKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
+ + P++T++++ N + H + +++ ++ V+ ++ G N
Sbjct: 249 HRVVEKTTA--PIITYSIDGNGTLNAHDV--DMTPKSSRYTVSYDGHDYTVAMNTTGLFN 304
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN LAA+ + G +EDI + ++ AVPGR ELI+E Q F V+VDYAHTPD L +
Sbjct: 305 VYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHTPDGLENI 364
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L + + + RII V GC G+ D KRP+M +IA DV +TSDNP EDP+ I+ D+
Sbjct: 365 LQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPVQIVKDV 424
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
GV ++ E +Y + + RR A++ A+ + GD+V++AGKGHE
Sbjct: 425 EVGVKDGLR------EGTHYEVIVD---------RREAIQHAIQHAKSGDIVLIAGKGHE 469
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
YQI DK FDDREE+R AL+
Sbjct: 470 DYQILKDKTIHFDDREEARAALK 492
>gi|251772194|gb|EES52764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Leptospirillum ferrodiazotrophum]
Length = 512
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/386 (39%), Positives = 223/386 (57%), Gaps = 25/386 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GLR G++ +V ++ GD E+P+TTP A+ +Q + L+NG A+ ME SSH L+ R
Sbjct: 146 GLRAGLIGTV-WFDLGDGLSEAPQTTPGALFLQRSFRQALNNGLVAMSMEVSSHALSQDR 204
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR--KVVNIDDPNATS 119
+ F FTNLTRDH+D+H T E+Y NAKA+L V+P+ V+N DDP
Sbjct: 205 VAGTFFSAVHFTNLTRDHLDYHKTFEDYFNAKARLL-HWVNPDGSLPPAVINADDPYGRI 263
Query: 120 FIAQ--GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q D ++T+ +++ +HPL+ +SL + ++ + + S L G N+
Sbjct: 264 LAEQIARRGDRRLLTYG-HSERLSIHPLESVISLDGIKGALSVEGRRISVDSTLPGDFNL 322
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
NI+ AV +A+G E + GI+ + VPGR E + F VIVDYAHT DAL +L
Sbjct: 323 QNIMGAVGCALALGISPEAVEAGIQSLPGVPGRFERANPGGKFAVIVDYAHTDDALKNIL 382
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++R L P R+ITV GC G+ DRGKRP M K+A + SD+ ++TSDNP EDP I+D++
Sbjct: 383 SALRPLTPGRVITVFGCGGDRDRGKRPRMGKVAGELSDIVVVTSDNPRTEDPEFIIDEIE 442
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+ T + YL+ E D RR A+ A+++ + GD V++AGKGHE
Sbjct: 443 PGLNMTGRSYLR--EVD----------------RRTAIARALSLAQPGDAVLIAGKGHEP 484
Query: 358 YQIEGDKKEFFDDREESREALQYVDE 383
YQI G K FDDRE +RE L+ + E
Sbjct: 485 YQIIGHAKSHFDDRETAREILRSMGE 510
>gi|422413576|ref|ZP_16490535.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria innocua FSL S4-378]
gi|313617979|gb|EFR90139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria innocua FSL S4-378]
Length = 491
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 145/382 (37%), Positives = 218/382 (57%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY AK+ LF+++ + V+N DD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKIAVLNADDKES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q ++TF ++ + AD +++ + + TP G + ++G ++
Sbjct: 246 VRM--QTATAAHIITFGIK-EPADFSASNIQITSHGSTFDLKTPVGDFSLKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+ + + +E + V GR EL++ Q F VIVDY+HTPD+L +L
Sbjct: 303 YNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAGQDFPVIVDYSHTPDSLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +EDP I++DM
Sbjct: 363 QTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSEDPHAIIEDMT 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV P +H+ RR A+R AV M E GD++++AGKGHE
Sbjct: 423 QGV-------------------PGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 464 YQVIGDEVIDFDDRVEARIAIE 485
>gi|294792045|ref|ZP_06757193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Veillonella sp. 6_1_27]
gi|294457275|gb|EFG25637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Veillonella sp. 6_1_27]
Length = 496
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 218/382 (57%), Gaps = 23/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V I GD TTPD V +Q+++ +M+ G VME SSH LALGR
Sbjct: 132 GHKVGVIGTVHIMI-GDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
S V++D AVFTNLT+DH+DFH T E Y AK KLF ++ P + + V+NIDD
Sbjct: 191 VSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKGAVINIDDAYG 250
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P++T++++ ++ +++ ++ V+ ++ G N+
Sbjct: 251 HRVVEKTTA--PIITYSIDGS-GTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNV 307
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ + G +EDI + ++ AVPGR ELI+E Q F V+VDYAHTPD L +L
Sbjct: 308 YNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHTPDGLENIL 367
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ + + RII V GC G+ D KRP+M +IA DV +TSDNP EDP+ I+ D+
Sbjct: 368 QTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPVQIVKDVE 427
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV ++ E +Y + + RR A++ A+ + GD+V++AGKGHE
Sbjct: 428 VGVKDGLR------EGTHYEVIVD---------RREAIQHAIQHAKSGDIVLIAGKGHED 472
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI DK FDDREE+R AL+
Sbjct: 473 YQILKDKTIHFDDREEARAALK 494
>gi|296133664|ref|YP_003640911.1| UDP-N-acetylmuramyl tripeptide synthetase [Thermincola potens JR]
gi|296032242|gb|ADG83010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola potens JR]
Length = 495
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 151/382 (39%), Positives = 216/382 (56%), Gaps = 24/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I D L TTP+++ +Q L+A+M+ G + VME SSH L L R
Sbjct: 130 GKKVGLIGTIKNKII-DRVLPVTNTTPESLDLQALLAEMVDAGVDYAVMEVSSHALELNR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
+ ++D A+FTN+T+DH+DFH T + Y AK KLF + R + ++NIDD
Sbjct: 189 VAGCEYDQAIFTNITQDHLDFHETMDNYLAAKQKLFINLGKNSRKSRNKYGIINIDDSKG 248
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
SF+ + V +T+ +++ ADV K +L TP G +++ L G N+
Sbjct: 249 QSFLEVTHGQV--ITYGIQSA-ADVRAEKIDLRSDGVSFTAVTPRGSVDLKLNLTGLFNV 305
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAAVA G+ L I +EEV VPGR E ++ Q F V+VDYAHTPD L +L
Sbjct: 306 YNSLAAVASGLGENIALPVIKEALEEVKGVPGRMEKVEAGQPFAVLVDYAHTPDGLENVL 365
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ RE R+ITV GC G+ DR KRP+M +++ SD T+LTSDNP +E P +IL D+
Sbjct: 366 SAAREFTKGRLITVFGCGGDRDRTKRPIMGEVSAKLSDFTVLTSDNPRSESPAEILRDIE 425
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV P+ + + + R+ A+R A+ M GD+VV+AGKGHET
Sbjct: 426 EGV----------------KPIIGPEKYTVIEDRKEAIRHALNMARAGDVVVIAGKGHET 469
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G K FDDRE + E L+
Sbjct: 470 YQIVGTKVLPFDDREVAMEILK 491
>gi|315304093|ref|ZP_07874494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria ivanovii FSL F6-596]
gi|313627534|gb|EFR96266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria ivanovii FSL F6-596]
Length = 491
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/382 (37%), Positives = 222/382 (58%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q +ML G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDEILETKNTTPDSLTLQETFREMLLQGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY AK+ LF+++ + V+N DD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHSSNPKIAVLNADDEES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q V+TF ++ AD +++ + ++TP G ++ ++G ++
Sbjct: 246 VRM--QTATAAHVITFGIK-AAADFRASNIQITSHGSTFDLDTPGGHFKLKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ PL++ + +E + V GR EL+ Q F VIVDY+HTPD L +L
Sbjct: 303 YNVLAAIATSYALHIPLDNAISTVEAIPGVKGRFELVHAGQDFPVIVDYSHTPDGLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E A +R+ VVGC G+ D+GKRP M K+A + + TSDNP +E+P +I++DM+
Sbjct: 363 QTISEFAEKRVFVVVGCGGDRDKGKRPQMAKVAVKYATNPVFTSDNPRSENPREIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV END Y +H+ RR A++ A++ E GD++++AGKGHE
Sbjct: 423 KGV----------PENDSY---------VVHENRRDAIQYAISKAETGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI GD+ FDDR E+R A++
Sbjct: 464 YQIIGDEVIDFDDRVEARIAIE 485
>gi|189423744|ref|YP_001950921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter lovleyi SZ]
gi|189420003|gb|ACD94401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter lovleyi SZ]
Length = 506
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 162/394 (41%), Positives = 225/394 (57%), Gaps = 35/394 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL +L ++SY G +E+ TTP++ +Q + ++ G +A VME SSH L R
Sbjct: 129 GLPPAVLGTISYRF-GTTCIEASHTTPESTELQGIFRQLADAGAQAFVMEVSSHSLEQRR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPE-----RHRKVVNIDDPN 116
FDI VFTNLTRDH+D+HGT + Y +AK +LFS ++ P+ RH V+N DDP
Sbjct: 188 VDGSVFDIGVFTNLTRDHLDYHGTMQAYGSAKQRLFSELLRPDDRTPLRH-AVINADDPA 246
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVN-------TPHGILEISS 169
A FI PV+ + + E+++ ET VN TP G S
Sbjct: 247 AEEFIRAAA--CPVIRYGLAPGS--------EVTVRETTSSVNGISAILVTPQGEQPFHS 296
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHT 229
LLG N+ NILAA A G+A+G PL+ I++GIE+ VPGR E ++ +VDYAHT
Sbjct: 297 RLLGGFNLSNILAAAAAGVALGLPLQAIIQGIEQHTTVPGRLERVENRAGVTCLVDYAHT 356
Query: 230 PDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDP 289
DAL +L ++++LA RIITV GC G+ D GKRP+M +IA SD+ ++TSDNP EDP
Sbjct: 357 GDALENVLSTLKDLAGARIITVFGCGGDRDNGKRPIMGRIAAGYSDLAVVTSDNPRTEDP 416
Query: 290 LDILDDMLAGVGWTMQEYLKYGENDYYP----PLPNGHRLFLHDIRRVAVRCAVAMGEEG 345
+IL + AG+ L G +Y P P + + RR A+R AV + G
Sbjct: 417 HEILRQIRAGI-------LPLGLREYRPDELTAPPEDKGFVMLENRREAIRLAVRLARPG 469
Query: 346 DMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
D++++AGKGHE YQI G K+ FDDREE+ A +
Sbjct: 470 DILLLAGKGHEDYQIIGQTKQHFDDREEAANAFR 503
>gi|348026407|ref|YP_004766212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera elsdenii DSM
20460]
gi|341822461|emb|CCC73385.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera elsdenii DSM
20460]
Length = 501
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 224/382 (58%), Gaps = 23/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ I D +L TTPD V +Q+ +A M G VVME SSH LAL R
Sbjct: 132 GYHVGVIGTIHALI-DDEELPIHNTTPDVVELQHFLALMQEKGMTHVVMEVSSHALALNR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRKVVNIDDPNA 117
+ +++D AVFTNLT+DH+DFH T E Y AKAKLF + E VVNIDDP +
Sbjct: 191 VAGIEYDTAVFTNLTQDHLDFHKTMENYVAAKAKLFQSLTAADHVKENKTAVVNIDDPWS 250
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + V+T+ +E K AD+ ++ L ++ V P + ++ + G N+
Sbjct: 251 KDILNACH--CKVLTYGVE-KDADLKGSNLKVELKKSSFDVVGPFVNVHLNMNITGLFNV 307
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ A G I + I+ +VPGR EL++ Q F ++VDY+HTPD+L + L
Sbjct: 308 YNTLAAIGAAHAEGVDEATIDKAIQTFHSVPGRFELVEAGQDFAIVVDYSHTPDSLQKAL 367
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ R + P RI+ V GC G+ D+ KRP+M +I + +D+ I+TSDNP +E+P I++++
Sbjct: 368 ETARAMKPNRILAVFGCGGDRDKTKRPIMGRIGAELADIPIVTSDNPRSENPETIVEEVE 427
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV +E LK G++ H + ++ RR A+ AV + + D++V+AGKGHET
Sbjct: 428 AGV----KEGLKPGQH---------HEVIVN--RRDAIYRAVELAQTNDIIVIAGKGHET 472
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI D FDDREE+R A+
Sbjct: 473 YQILNDGTIHFDDREEARNAVH 494
>gi|381183336|ref|ZP_09892080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase,
partial [Listeriaceae bacterium TTU M1-001]
gi|380316781|gb|EIA20156.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase,
partial [Listeriaceae bacterium TTU M1-001]
Length = 397
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/387 (37%), Positives = 226/387 (58%), Gaps = 28/387 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ I D +E+ TTPD++ +Q + +KM VME SSH L GR
Sbjct: 35 GETTGLIGTMYMRI-ADETIETKNTTPDSLTLQRVFSKMNEKEVTTAVMEVSSHALVQGR 93
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD--PERHRK--VVNIDDPNA 117
D+D+AVFTNL++DH+D+H T EEY AK+ LF+++ + + H K ++N+DD +
Sbjct: 94 VYGTDYDVAVFTNLSQDHLDYHKTMEEYAYAKSLLFAQLGNRYSKNHPKMAILNVDDQAS 153
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + ++T+ + ++KAD K E++ T + +P G + ++G+ ++
Sbjct: 154 KTM--KRATAAHIITYGI-DQKADFRARKMEITSKGTTFELVSPEGTETVHIQMIGKFSV 210
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YNILAA+A G PL++I++ + + V GR EL+ Q F VIVDYAHTPD L +L
Sbjct: 211 YNILAAIATCYVCGVPLKEIMKTLSGIKGVRGRFELVHAGQDFPVIVDYAHTPDGLLNVL 270
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ E A +RI VVGC G+ D+GKRP M KIA + + I TSDNP E+P+ I++DML
Sbjct: 271 ETISEFAEKRIFVVVGCGGDRDKGKRPKMAKIAAEYATNPIFTSDNPRTEEPVAIINDML 330
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV + + Y N R+ A+ AV E+GD++++AGKGHE
Sbjct: 331 EGV-----------QGESYEVRVN---------RKEAIELAVNSAEKGDVILIAGKGHED 370
Query: 358 YQIEGDKKEFFDDREESREALQYVDEL 384
YQI G +K FDDR + EA++ +L
Sbjct: 371 YQIIGTEKHDFDDRLVAHEAIEKKQKL 397
>gi|428774750|ref|YP_007166537.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Halothece sp. PCC 7418]
gi|428689029|gb|AFZ42323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Halothece sp. PCC 7418]
Length = 495
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 209/377 (55%), Gaps = 26/377 (6%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
T + ++ G N++ + TTP +Q +A L G E V+E SSH LA GR
Sbjct: 139 TALFGTLYARWQGYNQVAT-HTTPFPAELQAQLATALSAGNEYAVLEVSSHALAQGRVKG 197
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
F++AVFTNLT+DH+DFH T E Y AKA LF + + R R ++N DDP I +
Sbjct: 198 CAFEVAVFTNLTQDHLDFHETMENYFQAKALLFRK--EYLRDRAIINQDDPYGQRLIQEL 255
Query: 125 NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAV 184
+ V ++ ++ AD++ Q + TP G + S L+G N+ N+LAAV
Sbjct: 256 ATE-KVWRYSRQDTSADLYTENLVYEASGVQGTLKTPQGEITFRSPLVGEFNLSNLLAAV 314
Query: 185 AVGIAVGAPLEDIVRGIEEVDAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRE 242
+ +G LE I + + VPGR E ++ Q VIVDYAHTPD+L LL + R
Sbjct: 315 GAALHLGVELETIAQALPNFTGVPGRMERVVVAPSQDISVIVDYAHTPDSLENLLRAARP 374
Query: 243 LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGW 302
P+R+I V GC G+ DR KRPLM KIA+D +DV ++TSDNP EDP I++D+L G
Sbjct: 375 FIPQRLICVFGCGGDRDRTKRPLMGKIASDLADVPVVTSDNPRTEDPQQIIEDILEG--- 431
Query: 303 TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEG 362
+ N + D R VA+ A+AM + GD V++AGKGHE YQI G
Sbjct: 432 ----------------MANAETIVQRD-RAVAIASAIAMAQPGDGVLIAGKGHEDYQILG 474
Query: 363 DKKEFFDDREESREALQ 379
+K FDDREE+R+ L+
Sbjct: 475 TEKVHFDDREEARKGLE 491
>gi|354582288|ref|ZP_09001190.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus lactis
154]
gi|353199687|gb|EHB65149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus lactis
154]
Length = 494
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 156/387 (40%), Positives = 225/387 (58%), Gaps = 31/387 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL+TG++ ++ G + PRTTP+A+ +Q + +M G + VME SSH L GR
Sbjct: 127 GLKTGLIGTIQMRYAGKS-FPMPRTTPEALELQRNLNEMAEAGMQCCVMEVSSHALEQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRK--VVNIDDP 115
DF A+FTNLT+DH+D+H T EEYR AK FSR+ + E+ RK V+N DD
Sbjct: 186 VKGTDFRTAIFTNLTQDHLDYHHTMEEYRAAKGLFFSRLGNAFPKDEQSRKYAVLNADDE 245
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+ F Q +V + + + ++ADV ++ T V+T G +IS ++G+
Sbjct: 246 ASAYFAKQTAAEV--IYYGL-GEQADVRASNIAITAQGTSFHVDTFRGSTDISIKMVGKF 302
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN +AA+A + G PLEDI +E V V GR E++DE Q + VIVDYAHTPD L
Sbjct: 303 NVYNAMAAIAAALLEGVPLEDIKSSLESVPGVDGRVEVVDEGQPYAVIVDYAHTPDGLEN 362
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +V E A R++TV GC G+ DR KRP+M KIA SD+ ++TSDNP EDP IL D
Sbjct: 363 VLRTVNEFAEGRVLTVFGCGGDRDRTKRPIMGKIAAKYSDIVLVTSDNPRTEDPGAILKD 422
Query: 296 MLAGV---GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ AG+ G + Y +L + RR A++ A+ M GD+V++AG
Sbjct: 423 IEAGLVEDGVSEDRY----------------KLIVD--RREAIQKAIEMASPGDVVLIAG 464
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHETYQ+ + FDDR +++A++
Sbjct: 465 KGHETYQLIAGEVLDFDDRIVAKDAIR 491
>gi|347549434|ref|YP_004855762.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
ligase [Listeria ivanovii subsp. ivanovii PAM 55]
gi|346982505|emb|CBW86503.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
ligase [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 491
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/382 (37%), Positives = 219/382 (57%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q +ML G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY AK+ LF+++ + V+N DD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNPKIAVLNADDEES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q V+TF ++ AD +++ + ++TP G ++ ++G ++
Sbjct: 246 VRM--QTATAAHVITFGIK-AAADFRASNIQITSHGSTFDLDTPEGRFKLKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ PLE+ + +E + V GR EL+ Q F VIVDY+HTPD L +L
Sbjct: 303 YNVLAAIATSYALHIPLENAISTVESIPGVKGRFELVHAGQDFPVIVDYSHTPDGLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E A +R+ VVGC G+ D+GKRP M KIA + + TSDNP +E+P +I++DM+
Sbjct: 363 QTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVKYATNPVFTSDNPRSENPREIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV P +H+ RR A++ A++ E GD++++AGKGHE
Sbjct: 423 NGV-------------------PESDSYVVHENRRDAIQYAISEAETGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI GD+ FDDR E+R A++
Sbjct: 464 YQIIGDEVIDFDDRVEARIAIE 485
>gi|154685937|ref|YP_001421098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens FZB42]
gi|166224771|sp|A7Z4E1.1|MURE_BACA2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|154351788|gb|ABS73867.1| MurE [Bacillus amyloliquefaciens FZB42]
Length = 490
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 222/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 128 GRQTGLIGTM-YIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEVSSHALSLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T E+YR AK+ LFS++ H R V+N DD +
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKAS 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + ++T+ +EN ADV + E+S T + TP G +I+ L+GR N+
Sbjct: 247 AYF--EKVTAAHILTYGIEND-ADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A GIA G P + I +EE+ V GR EL++ Q F V+VDYAHTPD+L +L
Sbjct: 304 YNVLAAAATGIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVVVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ +++ ++ VVGC G+ D+ KRP M +IA +D I TSDNP +EDPL IL DM
Sbjct: 364 NTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAILRDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV E YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 RGV-----------EGTYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 464 YQQIGNETFDFDDAEVAGRAI 484
>gi|294793910|ref|ZP_06759047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Veillonella sp. 3_1_44]
gi|294455480|gb|EFG23852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Veillonella sp. 3_1_44]
Length = 496
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 218/382 (57%), Gaps = 23/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V I GD TTPD V +Q+++ +M+ G VME SSH LALGR
Sbjct: 132 GHKVGVIGTVHIMI-GDTSYPIHNTTPDVVDLQHILHQMVEEGVTYCVMEVSSHALALGR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
S V++D AVFTNLT+DH+DFH T E Y AK KLF ++ P + + V+NIDD
Sbjct: 191 VSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKGAVINIDDAYG 250
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P++T++++ ++ +++ ++ V+ ++ G N+
Sbjct: 251 HRVVEKTTA--PIITYSIDGS-GTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNV 307
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ + G +EDI + ++ AVPGR ELI+E Q F V+VDYAHTPD L +L
Sbjct: 308 YNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHTPDGLENIL 367
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ + + RII V GC G+ D KRP+M +IA DV +TSDNP EDP+ I+ D+
Sbjct: 368 QTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPVQIVKDVE 427
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV ++ E +Y + + RR A++ A+ + GD+V++AGKGHE
Sbjct: 428 VGVKDGLR------EGTHYEVIVD---------RREAIQHAIQNAQPGDIVLIAGKGHED 472
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI DK FDDREE+R AL+
Sbjct: 473 YQILKDKTIHFDDREEARAALK 494
>gi|269798178|ref|YP_003312078.1| UDP-N-acetylmuramyl tripeptide synthetase [Veillonella parvula DSM
2008]
gi|269094807|gb|ACZ24798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM
2008]
Length = 494
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 218/382 (57%), Gaps = 23/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V I GD TTPD V +Q+++ +M+ G VME SSH LALGR
Sbjct: 130 GHKVGVIGTVHIMI-GDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
S V++D AVFTNLT+DH+DFH T E Y AK KLF ++ P + + V+NIDD
Sbjct: 189 VSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQIKSGKGAVINIDDAYG 248
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P++T++++ ++ +++ ++ V+ ++ G N+
Sbjct: 249 HRVVEKTTA--PIITYSIDGS-GTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNV 305
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ + G +EDI + ++ AVPGR ELI+E Q F V+VDYAHTPD L +L
Sbjct: 306 YNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHTPDGLENIL 365
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ + + RII V GC G+ D KRP+M +IA DV +TSDNP EDP+ I+ D+
Sbjct: 366 QTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPIQIVKDVE 425
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV ++ E +Y + + RR A++ A+ + GD+V++AGKGHE
Sbjct: 426 VGVKDGLR------EGTHYEVIVD---------RREAIQHAIQNAKPGDIVLIAGKGHED 470
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI DK FDDREE+R AL+
Sbjct: 471 YQILKDKTIHFDDREEARAALK 492
>gi|392426981|ref|YP_006467975.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfosporosinus
acidiphilus SJ4]
gi|391356944|gb|AFM42643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfosporosinus
acidiphilus SJ4]
Length = 492
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 148/378 (39%), Positives = 217/378 (57%), Gaps = 26/378 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I G + + RTTP+A+ VQ L+ M+ VME SSH L LGR +
Sbjct: 134 KVGIIGTLGARIDGRD-IPGERTTPEAIEVQKLLGAMVAEKVSVAVMEVSSHALDLGRVA 192
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSFIA 122
+FD+ +FTNLT+DH+D+H T EEY NAKAKLFS + ++ + ++N DDP +F+
Sbjct: 193 GCEFDVGIFTNLTQDHLDYHKTMEEYLNAKAKLFSSLKGKKQPKLSILNGDDP---AFLK 249
Query: 123 QGN-PDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
N PVV++ + N++ + K +++ + + EI G ++YN L
Sbjct: 250 LNNASSAPVVSYGIHNQEVNYRAEKVQVTSDGVRFTIQFKGDSQEIWYATPGFFSVYNAL 309
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA G+ G + + + E+ VPGR E + Q F VIVDYAHTPD L ++ + R
Sbjct: 310 AAFVWGVERGYTPKSVAEALAEIPGVPGRFESVRSGQPFQVIVDYAHTPDGLENVVRTAR 369
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
+ R+ITV GC G+ DRGKRPLM K+A++ SD I+TSDNP EDP I+ ++L GV
Sbjct: 370 DFTQGRLITVFGCGGDRDRGKRPLMGKVASEGSDFLIVTSDNPRTEDPELIIQEVLQGV- 428
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
+ DY + L D RR A+ A M + GD +++AGKGHETYQI
Sbjct: 429 ---------SKVDY---------VALTD-RREAIEKACGMAKPGDTILIAGKGHETYQIF 469
Query: 362 GDKKEFFDDREESREALQ 379
G + FDDRE +RE+L+
Sbjct: 470 GTEVHPFDDREVARESLR 487
>gi|410455424|ref|ZP_11309304.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus bataviensis LMG 21833]
gi|409929251|gb|EKN66336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus bataviensis LMG 21833]
Length = 486
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 220/382 (57%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ Y D +E+ TTP+++++Q M+ G VME SSH L LGR
Sbjct: 127 GRTTGLIGTM-YTKIADKTIETKNTTPESLILQKTFQHMVDAGVSLAVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T EY+ AK+ LF+++ + K V+N DDP +
Sbjct: 186 VHGCDYDIAVFTNLTQDHLDYHKTMAEYKRAKSLLFAQLGNSFEKDKPKFAVLNADDPAS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + + V+T+ +E + AD+ +++ T + I + L+G+ ++
Sbjct: 246 EMY--RRSTAAHVITYGIE-QNADLQAENIKMTPRGTNFDLVIEGAIYPVQMQLIGKFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LA+++ + G + DI+ IE V+ V GR EL++ Q F VIVDYAHTPD+L +L
Sbjct: 303 YNVLASISAALVSGIEIHDIIHSIESVEGVAGRVELVNAGQDFTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ A RI +VGC G+ DR KRPLM +IA + + ILTSDNP +EDP IL +M
Sbjct: 363 KTIQHFAKNRIFVIVGCGGDRDRTKRPLMAQIACNWATDPILTSDNPRSEDPQAILKEME 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV + Y +P+ RR A+ AV GD++++AGKGHET
Sbjct: 423 AGV-----------QGKSYQVIPD---------RREAIYSAVHQATAGDVILIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G FDDR +REA++
Sbjct: 463 YQIIGTVVHDFDDRIVAREAIE 484
>gi|253576126|ref|ZP_04853458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844469|gb|EES72485.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 496
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 154/384 (40%), Positives = 214/384 (55%), Gaps = 25/384 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ G S TTP+++ +Q + M G E VME SSH LA GR
Sbjct: 128 GRETGLIGTIQRRFAGQTYPMSG-TTPESLELQQYLHDMAEGGGEYCVMEVSSHALAQGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP------ERHRKVVNIDDP 115
F AVFTNLT+DH+D+H T +EYR AK FSR+ + ER V+N+DDP
Sbjct: 187 VKGTRFRTAVFTNLTQDHLDYHKTMDEYRWAKGLFFSRLGNTYAENPEERSYAVLNVDDP 246
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+ F Q +V +T+ +E + ADV ++ T V+T G +IS ++G+
Sbjct: 247 ASAYFAKQTAAEV--ITYGVE-QDADVRASNISITARGTSFHVDTFRGSADISLRMVGKF 303
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAA++ + G PLE I +E V V GR E +DE Q F VIVDYAHTPD L
Sbjct: 304 NVYNALAAISATLLEGIPLEQIKASLESVKGVEGRVEAVDEGQDFAVIVDYAHTPDGLEN 363
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +V E A R+I V GC G+ DR KRP+M +IA +D ++TSDNP EDP IL D
Sbjct: 364 VLRTVNEFAKGRVICVFGCGGDRDRKKRPIMGQIAAKYADYVLVTSDNPRTEDPQAILRD 423
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ G+ + +Y L + RR A+ A+ M D+V++AGKGH
Sbjct: 424 IEQGLVEDGVDQARY-------------ELIVD--RREAIGKAIEMASREDVVLIAGKGH 468
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQ+ G K FDDR ++EA++
Sbjct: 469 ETYQLIGSKVLDFDDRIVAKEAIR 492
>gi|253699152|ref|YP_003020341.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter sp. M21]
gi|251774002|gb|ACT16583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M21]
Length = 505
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 156/386 (40%), Positives = 225/386 (58%), Gaps = 19/386 (4%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ + +L ++SY ++ +P TTP++V +Q ++ +++ G VME SSH L R
Sbjct: 128 GVPSAVLGTISYRFAA-TEIPAPNTTPESVDLQRILRELVDLGARGAVMEVSSHSLEQRR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPER----HRKVVNIDDPNA 117
FD+A+FTNLTRDH+D+H E Y +K +LF+ ++ P R VVN+DDP
Sbjct: 187 VDGCLFDVALFTNLTRDHLDYHLDMESYFKSKLRLFTDLLAPTAEKPLRRAVVNLDDPFG 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + PV+T++M KAD+ + E ++ + ++TP G + + S LLGR N+
Sbjct: 247 PRIAEKAS--APVLTYSM-TGKADISVAEAEFTVDGIRCRLDTPVGEISLVSELLGRFNL 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YNIL+AV G+A+G E I GIE VPGR E ++ E+ V+VDYAHT DAL +L
Sbjct: 304 YNILSAVGAGLALGYSKEAIRAGIEGHKRVPGRLERVESEEGITVLVDYAHTGDALENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+V EL RIIT+ GC G+ D+GKRP+M +IA SD+ ++TSDNP E+P ILDD+
Sbjct: 364 STVSELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSDLAVITSDNPRTEEPSAILDDVR 423
Query: 298 AGVGWTMQEYLKYGENDY-YPPLPNG-HRLFLHDIRRVAVRCAVAMGEE--GDMVVVAGK 353
AG+ L G +Y L G H I A+ GD+V++AGK
Sbjct: 424 AGI-------LPLGLREYGLEELAAGFHEKGFATIESRRAAIRAALLAARPGDIVILAGK 476
Query: 354 GHETYQIEGDKKEFFDDREESREALQ 379
GHE YQI G +K FDDREE+ AL+
Sbjct: 477 GHEDYQIVGTEKFHFDDREEAAAALK 502
>gi|147678201|ref|YP_001212416.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
thermopropionicum SI]
gi|146274298|dbj|BAF60047.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
thermopropionicum SI]
Length = 496
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 162/391 (41%), Positives = 219/391 (56%), Gaps = 30/391 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ +V+ I GD L TTP++ +Q L+ +M+ +A VME SSH LAL R
Sbjct: 129 GCRVGLIGTVNNRI-GDRVLPVKHTTPESADLQQLLHEMVIEKVDACVMEVSSHALALHR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
+FD+AVFTNLT+DH+DFH E+Y +K KLF + P R+ V+N DDP+A
Sbjct: 188 VDGSEFDLAVFTNLTQDHLDFHRDMEDYLESKLKLFKWLGRPGHKREAGIAVINADDPHA 247
Query: 118 TSFI-AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
FI A G V T+ ++N ADV + V G L + + G N
Sbjct: 248 GQFIRAAGGT---VYTYGIKNA-ADVRAESISIGARGACFGVAGKWGRLRLDLRITGLFN 303
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN LAA A+G P E+I +E+ PGR E++D Q F V+VDYAHTPD L +
Sbjct: 304 VYNALAAFTASAAMGVPAEEIKEALEKARGAPGRFEMVDSGQDFAVVVDYAHTPDGLENI 363
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L + R++ R+ITV GC G+ DR KRPLM IA SD I+TSDNP EDPL I+ +
Sbjct: 364 LKTARKITEGRLITVFGCGGDRDRTKRPLMGGIAARYSDFAIITSDNPRTEDPLKIIKE- 422
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
++E +K + Y P+ RR A+R AV M GD+VV+AGKGHE
Sbjct: 423 -------IEEGMKTAGWERYVTEPD---------RRKAIRLAVEMARRGDVVVIAGKGHE 466
Query: 357 TYQIEGDKKEFFDDREESREALQYVDELHQA 387
YQI G +K F+DR E+ AL+ EL +A
Sbjct: 467 DYQIIGTRKIPFNDRREAAAALK---ELKKA 494
>gi|168206084|ref|ZP_02632089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens E str. JGS1987]
gi|170662428|gb|EDT15111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens E str. JGS1987]
Length = 484
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 147/383 (38%), Positives = 219/383 (57%), Gaps = 34/383 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ YI G+ K+++ RTTP++ + L M+ G E VME SSH L L R
Sbjct: 129 GFMTGLIGTIANYI-GNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP---NAT 118
V F+ +FTNLTRDH+DFH T E Y NAK KLF R + ++N+DDP N
Sbjct: 188 VYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER-----SNHSIINLDDPYGANIV 242
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
I + V TF++E K++D + + ++ VN GI E S + G +NIY
Sbjct: 243 KDIEERGVKTKVSTFSIE-KESDFKAFEIKSHSNGSEFKVNL-EGIEEFSINIPGEYNIY 300
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTPDALSRL 236
N L + + P++ I G+ +V +PGRCEL+ +E+ + +I+DYAHTPD L +
Sbjct: 301 NSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENI 359
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V+ R+I+V GC G+ D+ KRP M KI + SD+ I+TSDNP +E+P+DI++D+
Sbjct: 360 LSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDI 419
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ PL N + R+ A+R A+ M EGD++V+AGKGHE
Sbjct: 420 V-------------------KPL-NYDNFIIEVNRKEAIRKAMNMALEGDVIVIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI D+ FD+RE + L+
Sbjct: 460 TYQILKDETIHFDEREVVYDILE 482
>gi|116626356|ref|YP_828512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Solibacter usitatus Ellin6076]
gi|122251654|sp|Q01Q43.1|MURE_SOLUE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|116229518|gb|ABJ88227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Solibacter usitatus Ellin6076]
Length = 494
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 154/384 (40%), Positives = 213/384 (55%), Gaps = 40/384 (10%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
T M+ ++ Y++ G L++ TTP+++ + + + +L G V ME SSH LALGR
Sbjct: 134 TAMIGTIEYHLAG-RVLKAVNTTPESLDLLQIFSDLLRAGGTHVTMEVSSHALALGRVHG 192
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
++F AVFTNLTRDH+DFHG E Y AK LF V+N DD +
Sbjct: 193 LNFHTAVFTNLTRDHLDFHGDMERYFAAKQMLFEGAGGNPPRFAVLNTDDEYSRRLRLHA 252
Query: 125 NPDVPVVTFAMENKKADVHP---------LKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+ + + M +AD+ P L+F+L + + + +P L+G+
Sbjct: 253 RTER--LWYGM-TPEADLRPRHIVSSFKGLRFDLQFRKQRFTIESP---------LIGKI 300
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YNILAA A G + G E + RGI + AVPGR E +DE Q F V+VDYAHT DAL
Sbjct: 301 NVYNILAACATGFSYGLAPEVVARGIASLKAVPGRFERVDEGQPFVVVVDYAHTDDALRN 360
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
++ R L PRR+IT+ GC G+ DR KRPLM K A + SD +LTSDNP +EDPL I++D
Sbjct: 361 VIAVARGLNPRRVITLFGCGGDRDRAKRPLMGKAAAEASDFVVLTSDNPRSEDPLTIMND 420
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
L G+ T ++ E D R A+R A+ EGD+V++AGKGH
Sbjct: 421 ALVGIRRTDVAHVV--EPD----------------REAAIRRAIKEAREGDIVILAGKGH 462
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQ+ DK FDDR +RE L+
Sbjct: 463 ETYQVLKDKTIDFDDRAVAREVLK 486
>gi|150016456|ref|YP_001308710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium beijerinckii NCIMB 8052]
gi|149902921|gb|ABR33754.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
NCIMB 8052]
Length = 486
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 225/389 (57%), Gaps = 53/389 (13%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ +++ +I GD K+ + RTTP+++ +Q L ++M+ G E VME SSH LAL R
Sbjct: 132 KVGLIGTIANFI-GDEKIHTERTTPESLELQELFSEMVDKGVEYCVMEVSSHSLALDRVY 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSFIA 122
++F + +FTNLTRDH+DFH T E Y AK KLF ER R K+VN+DD I+
Sbjct: 191 GIEFQVGIFTNLTRDHLDFHKTFENYYKAKFKLF------ERSRIKIVNVDDNYGRQVIS 244
Query: 123 QGN----PDV------PVVTFAMENKKADVHPLKFELSLFE-TQVLVNTPHGILEISSGL 171
N D+ + F +++ +KF+L+L E Q ++N P
Sbjct: 245 DLNNLKCDDIYSFSVKSISDFKAFDEEMGSREIKFKLNLKEDEQFVLNIP---------- 294
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYAHT 229
G +NIYN L A+A +G P++DI GIE V V GRCE + +E G +I+DYAHT
Sbjct: 295 -GEYNIYNALGAIAACFKLGMPIKDIKSGIENV-VVLGRCERVAKEYNLGYEIIIDYAHT 352
Query: 230 PDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDP 289
PD L +L + + R+I+V GC G+ D+ KRP M KI+TD +D+TI+TSDNP +E+P
Sbjct: 353 PDGLENILKTAKAFTKGRLISVFGCGGDRDKVKRPEMGKISTDIADITIVTSDNPRSEEP 412
Query: 290 LDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVV 349
L I+ D+ AG+ + D Y + N R+ A++ ++ + + D++V
Sbjct: 413 LSIIKDIEAGI-----------DKDNYFVIEN---------RKEAIKKSIDIALDNDVIV 452
Query: 350 VAGKGHETYQIEGDKKEFFDDREESREAL 378
+AGKGHETYQ+ D+ FD+RE +E L
Sbjct: 453 IAGKGHETYQVLKDETIHFDEREIVKEIL 481
>gi|328952335|ref|YP_004369669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfobacca acetoxidans DSM 11109]
gi|328452659|gb|AEB08488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
ligase [Desulfobacca acetoxidans DSM 11109]
Length = 531
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 220/375 (58%), Gaps = 18/375 (4%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V+ G SP TTP+++ +Q+L+A+M + +ME SSH L L R
Sbjct: 138 GAQVGVIGTVNCRF-GSQVRSSPVTTPESLDLQDLLAEMRAAAVDCAIMEVSSHALDLKR 196
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD-----PERHRKVVNIDDPN 116
V F +FTNL++DH+D+HG E Y K++LF ++ P+ V+N DDP
Sbjct: 197 VQAVRFAAGLFTNLSQDHLDYHGDMESYFAVKSRLFCELLTDCGDGPQL--AVINRDDPW 254
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
+ Q +P PV+T+ AD+ P L+ Q ++TP+G L+I S L+GR+N
Sbjct: 255 GQKLLPQTSP--PVLTYGFA-AGADIRPEDITLTHQGIQARLHTPYGRLDIVSPLMGRYN 311
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YNILAA + +G E +V G+ + V GR E + V+VDYAHTPDAL ++
Sbjct: 312 LYNILAASGAALGLGISPEHVVTGLANITGVDGRLEPVAAPGQPLVLVDYAHTPDALEKV 371
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +++ L RIITV GC G+ DR KRPLM ++ SDV I+TSDNP E+PL I++D+
Sbjct: 372 LAALKALDFDRIITVFGCGGDRDRRKRPLMGQVVARGSDVVIITSDNPRTEEPLAIIEDI 431
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI-RRVAVRCAVAMGEEGDMVVVAGKGH 355
LAG+ L E GHR +L RR A+R A+A+G G+++++AGKGH
Sbjct: 432 LAGLREMNCPRLDVSEAR------EGHRGYLVIADRRQAIRQAIAIGNPGEVILLAGKGH 485
Query: 356 ETYQIEGDKKEFFDD 370
ETYQI G ++ FDD
Sbjct: 486 ETYQILGTRRIHFDD 500
>gi|284048643|ref|YP_003398982.1| UDP-N-acetylmuramyl tripeptide synthetase [Acidaminococcus
fermentans DSM 20731]
gi|283952864|gb|ADB47667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
fermentans DSM 20731]
Length = 497
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 146/380 (38%), Positives = 220/380 (57%), Gaps = 22/380 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ I GD S TTPD V +Q ++ +M+ N + VME SSH LAL R
Sbjct: 132 GHKVGLIGTINVMI-GDEVRTSHNTTPDVVDLQKMLYEMVENHCDTCVMEVSSHALALDR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK--VVNIDDPNATS 119
+ +++D AV TN+T+DH+DFH T E YR AKA LF+R+ + + K V N DDP +S
Sbjct: 191 VAGIEYDTAVLTNITQDHLDFHKTMENYREAKALLFTRLHEGTKPNKTAVFNSDDP--SS 248
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
I ++T+ + K DV+PL F ++ ++ + TP G +++ + G N+YN
Sbjct: 249 AIIMPRVKTKIMTYG-KGKDNDVYPLTFHVAASHMELNLQTPVGEMDLKLHITGEFNVYN 307
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
++ ++ IA G EDI+RG+++ VPGR +LI Q F V+VDYAHTPD L +L +
Sbjct: 308 VMGSICAAIAEGLTREDIIRGLDDFAGVPGRFQLIHAGQPFTVVVDYAHTPDGLENVLKT 367
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
R++ ++ V G G+ DR KRP+M KIA D +D+ ++TSDNP +EDP I+ D
Sbjct: 368 ARQITKGKLWVVFGAGGDRDRKKRPIMGKIALDLADIAVVTSDNPRSEDPEAIIRD---- 423
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
++E LK P G + RR A+ +A + D+V++AGKGHE YQ
Sbjct: 424 ----IEEGLKDN--------PEGKEIHKITDRREAIEYVMAHAKPDDVVMIAGKGHENYQ 471
Query: 360 IEGDKKEFFDDREESREALQ 379
I D+ FDD E R+ Q
Sbjct: 472 ILKDRTIHFDDGEVVRDFFQ 491
>gi|222053876|ref|YP_002536238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter daltonii FRC-32]
gi|221563165|gb|ACM19137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter daltonii
FRC-32]
Length = 508
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 159/384 (41%), Positives = 226/384 (58%), Gaps = 16/384 (4%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL +L +V+Y GD + +P TTP++V +Q + K++ G + +VME SSH L R
Sbjct: 128 GLPAAVLGTVNYRF-GDLSIPAPNTTPESVDLQQTLRKLVDAGAKGIVMEVSSHALQQRR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV-----DPERHRKVVNIDDPN 116
F++ VFTNLTRDH+D+H E Y +K +LFS ++ PERH V+N DD
Sbjct: 187 IDGCSFNVGVFTNLTRDHLDYHLDMESYLQSKTRLFSELLVPDEKKPERH-AVINTDDEY 245
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
IAQ PVVT+ +E K AD++ E S+ + TP G +E+ S L+GR N
Sbjct: 246 GRR-IAQAAA-CPVVTYGIE-KSADINAENVEFSVSGISCTLATPKGRIELRSMLVGRFN 302
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YNI+AA G+A+G PLE I G+E VPGR E ++ V+VDYAHT DAL +
Sbjct: 303 LYNIMAAAGAGVALGLPLESIKEGLEHHGQVPGRLERVENALGVTVLVDYAHTGDALENV 362
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L ++ EL RIIT+ GC G+ D+GKRP+M +IA SD++I+TSDNP E+P +I+ +
Sbjct: 363 LLTMTELKKGRIITLFGCGGDRDKGKRPIMGEIAGRYSDLSIITSDNPRTENPAEIMAQV 422
Query: 297 LAG-VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
G V + EY + Y + + R+ A+R AV GD+V++AGKGH
Sbjct: 423 REGIVRLGICEY-----SSYEAAIFQEKGFVSIEQRQDAIRLAVKAARPGDIVLLAGKGH 477
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
E YQI G +K FDDRE + +A +
Sbjct: 478 EDYQIIGKEKFHFDDREVAAQACR 501
>gi|304437329|ref|ZP_07397288.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304369585|gb|EFM23251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 496
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 217/382 (56%), Gaps = 24/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ I D L + TTPD +++Q ++A+M G + VVME SSH LALGR
Sbjct: 132 GHRVGLIGTIQAMIE-DEVLPTSNTTPDIIVLQQMLAEMRTRGMDTVVMEVSSHALALGR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP---ERHRKVVNIDDPNAT 118
+ ++FD AVFTNLT+DH+DFH T E Y AKA LF + P E V+N DD A
Sbjct: 191 VAGIEFDTAVFTNLTQDHLDFHKTMENYARAKAHLFELVSAPGAKEGKTAVLNADD--AA 248
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQV-LVNTPHGILEISSGLLGRHNI 177
S + P++T+ +++ AD+ +L+ ++ L++ + + +G+ G N+
Sbjct: 249 SETMRAYTRCPIITYGVDHP-ADLTAQDVQLACDGMELTLMHGGKRLFHLHTGITGLFNV 307
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
+N+LAAV +A DI + VPGR EL+ E Q F VIVDYAHTPD + +L
Sbjct: 308 HNVLAAVGASLAEQVAATDIAAALTAFTGVPGRFELVREGQDFAVIVDYAHTPDGMENVL 367
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ R + II V GC G+ DR KRP+M +I + +D+ ILTSDNP EDP I+D++
Sbjct: 368 RTARAVTKGHIIAVFGCGGDRDRTKRPIMGRIGAEMADIAILTSDNPRTEDPTAIVDEVE 427
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV + G+ Y + RR A+ A+ + GD VV+ GKGHET
Sbjct: 428 RGVLPVI------GDKPYEKIVD----------RRTAIFHAIGRAQAGDTVVILGKGHET 471
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI D FDDRE++REA++
Sbjct: 472 YQILKDGTIHFDDREQAREAIR 493
>gi|18310844|ref|NP_562778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens str. 13]
gi|21362685|sp|Q8XJ99.1|MURE_CLOPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|18145526|dbj|BAB81568.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Clostridium perfringens str. 13]
Length = 484
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 146/383 (38%), Positives = 219/383 (57%), Gaps = 34/383 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ YI G+ K+++ RTTP++ + L M+ G E VME SSH L L R
Sbjct: 129 GFMTGLIGTIANYI-GNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP---NAT 118
+ F+ +FTNLTRDH+DFH T E Y NAK KLF R + ++N+DDP N
Sbjct: 188 VYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER-----SNHSIINLDDPYGANIV 242
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
I + V TF++E K++D + + ++ VN GI E S + G +NIY
Sbjct: 243 KDIEERGVKTKVSTFSIE-KESDFKAFEIKSHSNGSEFKVNL-EGIEEFSINIPGEYNIY 300
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTPDALSRL 236
N L + + P++ I G+ +V +PGRCEL+ +E+ + +I+DYAHTPD L +
Sbjct: 301 NSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENI 359
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V+ R+I+V GC G+ D+ KRP M KI + SD+ I+TSDNP +E+P+DI++D+
Sbjct: 360 LSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDI 419
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ PL N + R+ A+R A+ M EGD++V+AGKGHE
Sbjct: 420 V-------------------KPL-NYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI D+ FD+RE + L+
Sbjct: 460 TYQILKDETIHFDEREVVYDILE 482
>gi|422874782|ref|ZP_16921267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens F262]
gi|380304423|gb|EIA16712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens F262]
Length = 484
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 146/383 (38%), Positives = 219/383 (57%), Gaps = 34/383 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ YI G+ K+++ RTTP++ + L M+ G E VME SSH L L R
Sbjct: 129 GFMTGLIGTIANYI-GNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP---NAT 118
+ F+ +FTNLTRDH+DFH T E Y NAK KLF R + ++N+DDP N
Sbjct: 188 VYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER-----SNHSIINLDDPYGANIV 242
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
I + V TF++E K++D + + ++ VN GI E S + G +NIY
Sbjct: 243 KDIEERGVKTKVSTFSIE-KESDFKAFEIKSHSNGSEFKVNL-EGIEEFSINIPGEYNIY 300
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTPDALSRL 236
N L + + P++ I G+ +V +PGRCEL+ +E+ + +I+DYAHTPD L +
Sbjct: 301 NSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENI 359
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V+ R+I+V GC G+ D+ KRP M KI + SD+ I+TSDNP +E+P+DI++D+
Sbjct: 360 LSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDI 419
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ PL N + R+ A+R A+ M EGD++V+AGKGHE
Sbjct: 420 V-------------------KPL-NYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI D+ FD+RE + L+
Sbjct: 460 TYQILKDETIHFDEREVVYDILE 482
>gi|282850407|ref|ZP_06259786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella parvula ATCC 17745]
gi|282579900|gb|EFB85304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella parvula ATCC 17745]
Length = 494
Score = 257 bits (656), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 217/382 (56%), Gaps = 23/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V I GD TTPD V +Q+++ +M+ G VME SSH LALGR
Sbjct: 130 GHKVGVIGTVHIMI-GDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
S V++D AVFTNLT+DH+DFH T E Y AK KLF ++ + + V+NIDD
Sbjct: 189 VSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKSNQVKSGKGAVINIDDAYG 248
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P++T++++ ++ +++ ++ V+ ++ G N+
Sbjct: 249 QRVVEKTTA--PIITYSIDGS-GTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNV 305
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ + G +EDI + ++ AVPGR ELI+E Q F V+VDYAHTPD L +L
Sbjct: 306 YNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHTPDGLENIL 365
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ + + RII V GC G+ D KRP+M +IA DV +TSDNP EDP+ I+ D+
Sbjct: 366 QTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPVQIVKDVE 425
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV ++ E +Y + + RR A++ A+ + GD+V++AGKGHE
Sbjct: 426 VGVKDGLR------EGTHYEVIVD---------RREAIQHAIQHAKSGDIVLIAGKGHED 470
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI DK FDDREE+R AL+
Sbjct: 471 YQILKDKTIHFDDREEARAALK 492
>gi|220931747|ref|YP_002508655.1| UDP-N-acetylmuramyl tripeptide synthetase [Halothermothrix orenii H
168]
gi|219993057|gb|ACL69660.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H
168]
Length = 499
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/378 (40%), Positives = 220/378 (58%), Gaps = 22/378 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ I GD L + RTTP+++ + L A+M+ +G VME SSH L L R
Sbjct: 130 GFNTGLVGTIKNII-GDETLPATRTTPESLDLYRLFARMVDSGVTHAVMEVSSHALDLKR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
++F I VFTN+++DH+D+H + +EY AK++LF R ++P VVNIDD ++ I
Sbjct: 189 VEGMEFKIGVFTNISQDHLDYHKSLDEYLKAKSRLF-RQLEP-GGWAVVNIDDSHSDKII 246
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
++ +T+ +E D+ + LS V+ +I L G N+YN L
Sbjct: 247 KSTTGNI--ITYGIEGD-CDLKANEINLSPTGVSYHVSGKES-FKIDLNLTGLFNVYNSL 302
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA++ G +G E I GIE+V V GR EL++E Q F V+VDYAHTPD + +L++ R
Sbjct: 303 AAISCGHVLGINGETIKAGIEKVQGVAGRFELVNEGQDFAVVVDYAHTPDGMENVLETAR 362
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
E II V GC G+ D+GKRPLM KIAT D I+TSDNP +EDP++I+ D+ G+
Sbjct: 363 EFVKGNIIVVFGCGGDRDKGKRPLMGKIATQLGDYCIITSDNPRSEDPMEIIKDIEKGI- 421
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
+E + + Y P+ RR A+ A+ + DMV++ GKGHETYQI
Sbjct: 422 --QEEVI---SDTPYVKEPD---------RRKAIFSAINSARKDDMVIIFGKGHETYQIF 467
Query: 362 GDKKEFFDDREESREALQ 379
DK FDDRE +REAL+
Sbjct: 468 KDKTIPFDDREVAREALK 485
>gi|402815850|ref|ZP_10865442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Paenibacillus alvei DSM 29]
gi|402506890|gb|EJW17413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Paenibacillus alvei DSM 29]
Length = 498
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 211/361 (58%), Gaps = 24/361 (6%)
Query: 25 RTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHG 84
RTTP+A +Q + M++ G ++V ME SSH L GR F AVFTNLT+DH+D+H
Sbjct: 152 RTTPNAFELQKSLHDMVNEGVDSVAMEVSSHALVQGRVQGCRFRTAVFTNLTQDHLDYHE 211
Query: 85 TEEEYRNAKAKLFSRM------VDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENK 138
T E YR AK LFSR+ V+ ER V+N DDP++ F + + + + M +
Sbjct: 212 TMEAYREAKGLLFSRLGNTFSDVEAERSYAVLNGDDPSSEYFASITTAET--IKYGM-FE 268
Query: 139 KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIV 198
+ADV ++ T V+T G L+I ++G+ N+YN LAA+AVG+ G LE I
Sbjct: 269 QADVRAENIRITAKGTSFTVHTFKGSLDIQLRMVGKFNVYNALAAIAVGLIEGIELEAIR 328
Query: 199 RGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258
++ V V GR E ++ Q+F VIVDYAHTPD L +L +V+E A R+I+V GC G+
Sbjct: 329 DSLQSVPGVDGRVEAVEAGQSFAVIVDYAHTPDGLENVLQTVKEFAEGRVISVFGCGGDR 388
Query: 259 DRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPP 318
DR KRPLM KI+ +D +I+TSDNP EDP I+ D++ G+ +
Sbjct: 389 DRTKRPLMGKISARYADYSIVTSDNPRTEDPDLIIKDIVEGLHEVKLD------------ 436
Query: 319 LPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
P+ + + RR A+ A+ M D+V++AGKGHETYQI G + FDDR ++EA+
Sbjct: 437 -PSRYECIVD--RRAAITKAIEMASPHDVVLIAGKGHETYQIIGKETFDFDDRLVAKEAI 493
Query: 379 Q 379
+
Sbjct: 494 R 494
>gi|168215221|ref|ZP_02640846.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens CPE str. F4969]
gi|170713380|gb|EDT25562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens CPE str. F4969]
Length = 484
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 146/383 (38%), Positives = 218/383 (56%), Gaps = 34/383 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ YI G+ K+++ RTTP++ + L M+ G E VME SSH L L R
Sbjct: 129 GFMTGLIGTIANYI-GNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP---NAT 118
V F+ +FTNLTRDH+DFH T E Y NAK KLF R + ++N+DDP N
Sbjct: 188 VYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER-----SNHSIINLDDPYGANIV 242
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
I + V TF++E K++D + + ++ VN I E S + G +NIY
Sbjct: 243 KDIEERGVKTKVSTFSIE-KESDFKAFEIKSHSNGSEFKVNL-ESIEEFSINIPGEYNIY 300
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTPDALSRL 236
N L + + P++ I G+ +V +PGRCEL+ +E+ + +I+DYAHTPD L +
Sbjct: 301 NSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENI 359
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V+ R+I+V GC G+ D+ KRP M KI + SD+ I+TSDNP +E+P+DI++D+
Sbjct: 360 LSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDI 419
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ PL N + R+ A+R A+ M EGD++V+AGKGHE
Sbjct: 420 V-------------------KPL-NYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI D+ FD+RE + L+
Sbjct: 460 TYQILKDETIHFDEREVVYDILE 482
>gi|303228427|ref|ZP_07315260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella atypica ACS-134-V-Col7a]
gi|303230769|ref|ZP_07317516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella atypica ACS-049-V-Sch6]
gi|302514529|gb|EFL56524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella atypica ACS-049-V-Sch6]
gi|302516929|gb|EFL58838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella atypica ACS-134-V-Col7a]
Length = 494
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 154/388 (39%), Positives = 220/388 (56%), Gaps = 31/388 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V I GD TTPD V +Q+++ +M+ E VME SSH LALGR
Sbjct: 130 GHKVGVIGTVHIMI-GDTSYPIHNTTPDVVDLQHILHQMVQENVEYCVMEVSSHALALGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM--VDPERHRK--VVNIDDPNA 117
S V+FD AVFTNLT+DH+DFH T E Y AK KLF ++ + E+ K V+NIDD
Sbjct: 189 VSGVEFDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAANQEKDNKGAVINIDDSYG 248
Query: 118 TSFIAQGNPDVPVVTFAMENK----KADVHPLKFELSLFETQVLVNTPHGILEISSGLLG 173
+ + P +T++ K +DVH +S +Q VN +S G
Sbjct: 249 HRVMEKTTA--PTITYSTLGKGTLNASDVH-----MSTKNSQYTVNYKGESYPVSMNTTG 301
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
N+YN LAA+ + G +E I ++ +VPGR ELI+E Q F V+VDYAHTPD L
Sbjct: 302 LFNVYNTLAAIGACLQEGISMEAIDTALKTFSSVPGRFELIEEGQDFAVVVDYAHTPDGL 361
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L++ + + RII V GC G+ D KRP+M +IA + D +TSDNP EDP+ I+
Sbjct: 362 QNILETAKAIKENRIIIVFGCGGDRDATKRPIMGRIAAEYGDKIYVTSDNPRTEDPVQIV 421
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
D+ GV +E L+ G + Y + + RR A+ A+ + GD+V++AGK
Sbjct: 422 KDVEVGV----KEALRDGTS--YEVIVD---------RREAINHAIHDAKAGDIVIIAGK 466
Query: 354 GHETYQIEGDKKEFFDDREESREALQYV 381
GHE YQI ++ FDDREE+R+AL+ +
Sbjct: 467 GHENYQILKNETIHFDDREEARKALKEI 494
>gi|238927328|ref|ZP_04659088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas flueggei ATCC 43531]
gi|238884610|gb|EEQ48248.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas flueggei ATCC 43531]
Length = 496
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 218/382 (57%), Gaps = 24/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ I D L + TTPD +++Q ++A+M G + VVME SSH LALGR
Sbjct: 132 GHRVGLIGTIQAMIE-DEVLPTSNTTPDIIVLQQMLAEMRTRGIDTVVMEVSSHALALGR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP---ERHRKVVNIDDPNAT 118
+ ++FD A FTNLT+DH+DFH T E Y AKA LF + P E V+N DD A
Sbjct: 191 VAGIEFDTAAFTNLTQDHLDFHKTMENYALAKAHLFELVSAPGTKEGKTAVLNADD--AA 248
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQV-LVNTPHGILEISSGLLGRHNI 177
S + + PV+T+ +++ AD+ +L+ ++ L++ + + +G+ G N+
Sbjct: 249 SETMRAHTHCPVITYGVDHP-ADLTAQDVQLACDGMELTLMHGGKRLFHLHTGITGLFNV 307
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
+N+LAAV +A DI + VPGR EL+ E Q F VIVDYAHTPD + +L
Sbjct: 308 HNVLAAVGASLAEHVEAADISAALTAFTGVPGRFELVREGQDFAVIVDYAHTPDGMENVL 367
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ R + RII V GC G+ DR KRP+M +I + +D+ ILTSDNP EDP I++++
Sbjct: 368 RTARAVTKGRIIAVFGCGGDRDRTKRPIMGRIGAEMADIAILTSDNPRTEDPAAIVNEVE 427
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV + G+ Y + RR A+ A+ + GD VV+ GKGHET
Sbjct: 428 RGVLPVI------GDKPYEKIVD----------RRTAIFHAIQRAQAGDTVVILGKGHET 471
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI D FDDRE++REA++
Sbjct: 472 YQILKDGTIHFDDREQAREAIR 493
>gi|168210775|ref|ZP_02636400.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens B str. ATCC 3626]
gi|170711101|gb|EDT23283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens B str. ATCC 3626]
Length = 484
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 146/383 (38%), Positives = 218/383 (56%), Gaps = 34/383 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ YI G+ K+++ RTTP++ + L M+ G E VME SSH L L R
Sbjct: 129 GFMTGLIGTIANYI-GNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP---NAT 118
V F+ +FTNLTRDH+DFH T E Y NAK KLF R + ++N+DDP N
Sbjct: 188 VYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER-----SNHSIINLDDPYGANIV 242
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
I + V TF++E K++D + + ++ VN I E S + G +NIY
Sbjct: 243 KDIEERGLKTKVSTFSIE-KESDFKAFEIKSHSNGSEFKVNL-ESIEEFSINIPGEYNIY 300
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTPDALSRL 236
N L + + P++ I G+ +V +PGRCEL+ +E+ + +I+DYAHTPD L +
Sbjct: 301 NSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENI 359
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V+ R+I+V GC G+ D+ KRP M KI + SD+ I+TSDNP +E+P+DI++D+
Sbjct: 360 LSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDI 419
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ PL N + R+ A+R A+ M EGD++V+AGKGHE
Sbjct: 420 V-------------------KPL-NYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI D+ FD+RE + L+
Sbjct: 460 TYQILKDETIHFDEREVVYDILE 482
>gi|182626138|ref|ZP_02953898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens D str. JGS1721]
gi|177908575|gb|EDT71100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens D str. JGS1721]
Length = 484
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 145/383 (37%), Positives = 218/383 (56%), Gaps = 34/383 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ YI G+ K+++ RTTP++ + L M+ G E VME SSH L L R
Sbjct: 129 GFMTGLIGTIANYI-GNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP---NAT 118
+ F+ +FTNLTRDH+DFH T E Y NAK KLF R + ++N+DDP N
Sbjct: 188 VYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER-----SNHSIINLDDPYGANIV 242
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
I + V TF++E K++D + + ++ VN I E S + G +NIY
Sbjct: 243 KDIEERGVKTKVSTFSIE-KESDFKAFEIKSHSNGSEFKVNL-ESIEEFSINIPGEYNIY 300
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTPDALSRL 236
N L + + P++ I G+ +V +PGRCEL+ +E+ + +I+DYAHTPD L +
Sbjct: 301 NSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKKLPYSIIIDYAHTPDGLENI 359
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V+ R+I+V GC G+ D+ KRP M KI + SD+ I+TSDNP +E+P+DI++D+
Sbjct: 360 LSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDI 419
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ PL N + R+ A+R A+ M EGD++V+AGKGHE
Sbjct: 420 V-------------------KPL-NYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI D+ FD+RE + L+
Sbjct: 460 TYQILKDETIHFDEREVVYDILE 482
>gi|239616915|ref|YP_002940237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
19.5.1]
gi|239505746|gb|ACR79233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
19.5.1]
Length = 488
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 149/378 (39%), Positives = 218/378 (57%), Gaps = 23/378 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + + ++ Y + G+ L + TTP ++ +Q ++ ++++ E VVME S+H L R
Sbjct: 131 GKKVALFGTIEYDL-GNRTLPASTTTPQSLELQAMLNELVNKEFEYVVMEVSTHATVLDR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ +FDI VFTN++RDHMDFH T E Y A+ K F R++ R V+NIDDP A I
Sbjct: 190 VTGCEFDIGVFTNISRDHMDFHKTMENYLEAEIKFF-RLLSRTGRRAVINIDDPYAEHII 248
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
N ++T+ + +K AD+ ++S ++ V TP G L GR+N+YN L
Sbjct: 249 K--NTRTEILTYGINDKNADIRAFDIKVSKTGSRFNVITPLGETVFYLRLPGRYNVYNAL 306
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AAV VGI+ G L +I I +VPGR E ID Q+F VIVDYAHTPDAL + L++ R
Sbjct: 307 AAVGVGISEGLNLNEIREAIAHA-SVPGRFERIDCGQSFDVIVDYAHTPDALQKALETAR 365
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
L+ RII V GC + DR RPLM +A SD+ ILTSDN NE+P +I+ D+ +G+
Sbjct: 366 GLSEGRIIVVFGCGDDKDR--RPLMGVVAARMSDIAILTSDNSRNEEPSEIISDIESGI- 422
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
+ N + + + R A+ A+ M +EGD+V++AGKGHE YQI
Sbjct: 423 ---------------KKVDNSFQYLVIEDRFEAITQALEMAKEGDLVLIAGKGHEEYQII 467
Query: 362 GDKKEFFDDREESREALQ 379
D+K F+DR+ + L+
Sbjct: 468 KDRKIPFNDRKVAERILK 485
>gi|422346531|ref|ZP_16427445.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Clostridium perfringens WAL-14572]
gi|373226076|gb|EHP48403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Clostridium perfringens WAL-14572]
Length = 484
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 144/376 (38%), Positives = 215/376 (57%), Gaps = 34/376 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ YI G+ K+++ RTTP++ + L M+ G E VME SSH L L R
Sbjct: 129 GFMTGLIGTIANYI-GNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP---NAT 118
+ F+ +FTNLTRDH+DFH T E Y NAK KLF R + ++N+DDP N
Sbjct: 188 VYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER-----SNHSIINLDDPYGANIV 242
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
I + V TF++E K++D + + ++ VN I E S + G +NIY
Sbjct: 243 KDIEEREVKTKVSTFSIE-KESDFKAFEIKSHSNGSEFKVNL-ESIEEFSINIPGEYNIY 300
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTPDALSRL 236
N L + + P++ I G+ +V +PGRCEL+ +E+ + +I+DYAHTPD L +
Sbjct: 301 NSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENI 359
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V+ R+I+V GC G+ D+ KRP M KI + SD+ I+TSDNP +E+P+DI++D+
Sbjct: 360 LSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDI 419
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ PL N + R+ A+R A+ M EGD++V+AGKGHE
Sbjct: 420 V-------------------KPL-NYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDRE 372
TYQI D+ FD+RE
Sbjct: 460 TYQILKDETIHFDERE 475
>gi|168215491|ref|ZP_02641116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens NCTC 8239]
gi|169343648|ref|ZP_02864647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens C str. JGS1495]
gi|169298208|gb|EDS80298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens C str. JGS1495]
gi|182382071|gb|EDT79550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens NCTC 8239]
Length = 484
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 145/383 (37%), Positives = 218/383 (56%), Gaps = 34/383 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ YI G+ K+++ RTTP++ + L M+ G E VME SSH L L R
Sbjct: 129 GFMTGLIGTIANYI-GNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP---NAT 118
+ F+ +FTNLTRDH+DFH T E Y NAK KLF R + ++N+DDP N
Sbjct: 188 VYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER-----SNHSIINLDDPYGANIV 242
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
I + V TF++E K++D + + ++ VN I E S + G +NIY
Sbjct: 243 KDIEERGVKTKVSTFSIE-KESDFKAFEIKSHSNGSEFKVNL-ESIEEFSINIPGEYNIY 300
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTPDALSRL 236
N L + + P++ I G+ +V +PGRCEL+ +E+ + +I+DYAHTPD L +
Sbjct: 301 NSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENI 359
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V+ R+I+V GC G+ D+ KRP M KI + SD+ I+TSDNP +E+P+DI++D+
Sbjct: 360 LSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDI 419
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ PL N + R+ A+R A+ M EGD++V+AGKGHE
Sbjct: 420 V-------------------KPL-NYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI D+ FD+RE + L+
Sbjct: 460 TYQILKDETIHFDEREVVYDILE 482
>gi|401679967|ref|ZP_10811891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella sp. ACP1]
gi|400219094|gb|EJO49965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella sp. ACP1]
Length = 494
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 154/388 (39%), Positives = 220/388 (56%), Gaps = 31/388 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V I GD TTPD V +Q+++ +M+ E VME SSH LALGR
Sbjct: 130 GHKVGVIGTVHIMI-GDTSYPIHNTTPDVVDLQHILHQMVQENVEYCVMEVSSHALALGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM--VDPERHRK--VVNIDDPNA 117
S V+FD AVFTNLT+DH+DFH T E Y AK KLF ++ + E+ K V+NIDD
Sbjct: 189 VSGVEFDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAANQEKDNKGAVINIDDSYG 248
Query: 118 TSFIAQGNPDVPVVTFAMENK----KADVHPLKFELSLFETQVLVNTPHGILEISSGLLG 173
+ + P +T++ K +DVH +S +Q VN +S G
Sbjct: 249 HRVMEKTTA--PTITYSTLGKGTLNASDVH-----MSTKNSQYTVNYKGESYPVSMNTTG 301
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
N+YN LAA+ + G +E I ++ +VPGR ELI+E Q F V+VDYAHTPD L
Sbjct: 302 LFNVYNTLAAIGACLQEGISMEAIDTALKTFSSVPGRFELIEEGQDFAVVVDYAHTPDGL 361
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L++ + + RII V GC G+ D KRP+M +IA + D +TSDNP EDP+ I+
Sbjct: 362 QNILETAKAIKENRIIIVFGCGGDRDATKRPIMGRIAAEYGDKIYVTSDNPRTEDPVQIV 421
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
D+ GV +E L+ G + Y + + RR A+ A+ + GD+V++AGK
Sbjct: 422 KDVEVGV----KEALRDGTS--YEVIVD---------RREAINHAIHDAKAGDIVIIAGK 466
Query: 354 GHETYQIEGDKKEFFDDREESREALQYV 381
GHE YQI ++ FDDREE+R+AL+ +
Sbjct: 467 GHENYQILKNETIHFDDREEARKALKEI 494
>gi|429759641|ref|ZP_19292139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella atypica KON]
gi|429179602|gb|EKY20849.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella atypica KON]
Length = 494
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 154/388 (39%), Positives = 220/388 (56%), Gaps = 31/388 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V I GD TTPD V +Q+++ +M+ E VME SSH LALGR
Sbjct: 130 GHKVGVIGTVHIMI-GDTSYPIHNTTPDVVDLQHILHQMVQENVEYCVMEVSSHALALGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM--VDPERHRK--VVNIDDPNA 117
S V+FD AVFTNLT+DH+DFH T E Y AK KLF ++ + E+ K V+NIDD
Sbjct: 189 VSGVEFDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAANQEKDNKGAVINIDDSYG 248
Query: 118 TSFIAQGNPDVPVVTFAMENK----KADVHPLKFELSLFETQVLVNTPHGILEISSGLLG 173
+ + P +T++ K +DVH +S +Q VN +S G
Sbjct: 249 HRVMEKTTA--PTITYSTLGKGTLNASDVH-----MSTKNSQYTVNYKGESYPVSMNTTG 301
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
N+YN LAA+ + G +E I ++ +VPGR ELI+E Q F V+VDYAHTPD L
Sbjct: 302 LFNVYNTLAAIGACLQEGISMEAIDTALKTFSSVPGRFELIEEGQDFAVVVDYAHTPDGL 361
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L++ + + RII V GC G+ D KRP+M +IA + D +TSDNP EDP+ I+
Sbjct: 362 QNILETAKVIKENRIIIVFGCGGDRDATKRPIMGRIAAEYGDKIYVTSDNPRTEDPVQIV 421
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
D+ GV +E L+ G + Y + + RR A+ A+ + GD+V++AGK
Sbjct: 422 KDVEVGV----KEALRDGTS--YEVIVD---------RREAINHAIHDAKAGDIVIIAGK 466
Query: 354 GHETYQIEGDKKEFFDDREESREALQYV 381
GHE YQI ++ FDDREE+R+AL+ +
Sbjct: 467 GHENYQILKNETIHFDDREEARKALKEI 494
>gi|312622930|ref|YP_004024543.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203397|gb|ADQ46724.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 486
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 152/382 (39%), Positives = 220/382 (57%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I G ++E+ TTP++ +Q L +M + G ++VVME SSH L L R
Sbjct: 133 GQKVGLIGTIKNMI-GSIEIEAQHTTPESYDLQKLFWQMKNEGVDSVVMEVSSHSLELFR 191
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ DFD+ VFTNLT+DH+DFHGT E Y AK KLF ++VVN DD I
Sbjct: 192 VYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFGM-----SKKRVVNADDMWGKRII 246
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ PD VT+A ++ A V +L + + Q + EI+ + G +IYN L
Sbjct: 247 -EMYPDS--VTYA-KDSDAQVFARNIKLFVNKNQFELWYNGEKEEITLNIPGVFSIYNSL 302
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA A I++G L+DI +G+E + AVPGR E+++ Q F V++DYAHTPD L L+ +V
Sbjct: 303 AASACCISLGIKLDDIKKGLENLKAVPGRFEIVESNQKFTVVIDYAHTPDGLLNLMKTVN 362
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
E+ R + + GC G+ DR KRP+M +IA +D I+TSDNP EDPL I+ D+L G+
Sbjct: 363 EVTDGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTSDNPRTEDPLKIIADILEGIK 422
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
T EY+ +P+ R A++ A+ E D +V+AGKGHETYQI
Sbjct: 423 KTNVEYV---------VIPD---------RYEAIKYAIKNARENDFIVLAGKGHETYQIL 464
Query: 362 GDKKEFFDDREESREALQYVDE 383
DK FD+RE + L+ + E
Sbjct: 465 KDKTIPFDEREVVKNILKEIRE 486
>gi|340758194|ref|ZP_08694785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
[Fusobacterium varium ATCC 27725]
gi|251835109|gb|EES63652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
[Fusobacterium varium ATCC 27725]
Length = 483
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 214/375 (57%), Gaps = 26/375 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+T + +V Y I GD +E+P TTP+++ + + K + G E +VME SSH LALGR
Sbjct: 128 KTARIGTVEYKI-GDEIIEAPNTTPESLDIVKMCKKSVEKGMEYLVMEVSSHALALGRVD 186
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
++FD+++FTNLT DH+DFH T E+Y AK KLF+ M V+NIDD
Sbjct: 187 MLEFDVSMFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYGKRL--- 243
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
+ + +++ M N+ V E +V +N + +I +LGR+N+YN+L A
Sbjct: 244 -SSEFGGISYGMHNE-GRVRGKILEFHGDGQEVEINIDNFSTKIKLAILGRYNVYNVLGA 301
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+++ + +G + I+ I+E+ PGR EL++ Q F VIVDY+HT DAL +L S+ EL
Sbjct: 302 LSIALLLGIERDIILDKIKELKGAPGRYELVNCGQDFTVIVDYSHTGDALENILKSINEL 361
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
+IITV GC G+ D KR +M +IA SD+ I+TSDNP EDP I++ +L G+
Sbjct: 362 KKGKIITVFGCGGDRDPNKRSVMGEIAERLSDIAIVTSDNPRTEDPHKIVEQVLEGM--- 418
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
G + + R +A+ AV + E D++++AGKGHETYQI G
Sbjct: 419 -----------------KGKNHIVEEDRDIAISKAVKLAEAKDIILIAGKGHETYQILGR 461
Query: 364 KKEFFDDREESREAL 378
KK FDDRE +R +
Sbjct: 462 KKIHFDDREIARREI 476
>gi|430750523|ref|YP_007213431.1| UDP-N-acetylmuramyl tripeptide synthetase [Thermobacillus composti
KWC4]
gi|430734488|gb|AGA58433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobacillus composti
KWC4]
Length = 494
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 159/372 (42%), Positives = 211/372 (56%), Gaps = 30/372 (8%)
Query: 17 GDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLT 76
G L TTPDA+ +Q L+A M GT ME SSH L GR F AVFTNLT
Sbjct: 140 GGRSLPMSGTTPDALELQRLLAGMAAEGTAYCAMEVSSHALEQGRVKGAKFRTAVFTNLT 199
Query: 77 RDHMDFHGTEEEYRNAKAKLFSRM--VDP----ERHRKVVNIDDPNATSFIAQGNPDVPV 130
+DH+D+HGT E Y AK LF+R+ V P ER V+N DDP + +F +
Sbjct: 200 QDHLDYHGTMERYAAAKELLFARLGNVYPAQPDERAYAVLNADDPASAAFARATAAET-- 257
Query: 131 VTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAV 190
+T+ + ++ ADV ++ T T G +I+ L+G+ N+YN LAA+A +
Sbjct: 258 ITYGI-DRPADVRAEDIRITARGTSFKAVTFRGEADIALRLVGKFNVYNALAAIAAALVE 316
Query: 191 GAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIIT 250
LED+ G+E V VPGR E +D Q F VIVDYAHTPD L +L +V+E+A RR+I
Sbjct: 317 DVSLEDVKEGLERVQGVPGRVEAVDAGQPFAVIVDYAHTPDGLENVLKAVKEIAERRLIL 376
Query: 251 VVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV---GWTMQEY 307
V GC G+ DRGKRP+M +I +D ILTSDNP E+P ILDD+ AG+ G + Y
Sbjct: 377 VFGCGGDRDRGKRPIMGRIGARYADHVILTSDNPRTENPETILDDIEAGLREDGVPAERY 436
Query: 308 LKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEF 367
+ + RR A+ AV M GD+V++AGKGHETYQI GD+K
Sbjct: 437 ERIAD------------------RRAAIEKAVEMASPGDVVLIAGKGHETYQIIGDRKID 478
Query: 368 FDDREESREALQ 379
FDDR + EA++
Sbjct: 479 FDDRLVAGEAIR 490
>gi|342217828|ref|ZP_08710466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Megasphaera sp. UPII 135-E]
gi|341592815|gb|EGS35675.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Megasphaera sp. UPII 135-E]
Length = 449
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 151/383 (39%), Positives = 224/383 (58%), Gaps = 26/383 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G+L ++ + + D +L TTPD V +Q ++ M G VVME SSH LAL R
Sbjct: 82 GHHVGVLGTI-HALLDDEELPIHNTTPDVVELQRFLSWMYDKGMTHVVMEVSSHALALHR 140
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
+ ++FD AVFTNLT+DH+DFH T E Y AKA+LF + + ++ ++N+DD A
Sbjct: 141 VAGIEFDTAVFTNLTQDHLDFHKTMERYVAAKAELFRGLTENREKKQGKTAIINVDDEWA 200
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVH--PLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
I V+T+ +E +KAD+ ++ EL V N + LE+ + G
Sbjct: 201 QQ-ILDACGTAKVLTYGIE-QKADLRGENVRVELKKASFTVQGNFVNASLEMP--VTGMF 256
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAA+ A G E I + + AVPGR EL++ Q F ++VDY+HTPD+L +
Sbjct: 257 NVYNTLAAMGAAHAEGVDTEVIEQAVRNFHAVPGRFELVEAGQDFAIVVDYSHTPDSLEK 316
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L + R L P+R++ V GC G+ DR KRP+M +IA +D++I+TSDNP +EDP I+ +
Sbjct: 317 ALVTARALNPQRVLVVFGCGGDRDRTKRPIMGRIAAQHADISIVTSDNPRSEDPETIVKE 376
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ GV +E + G+ Y + + RR A++ AV + GD++++AGKGH
Sbjct: 377 IEVGV----KEAITAGKT--YKVIVD---------RRKAIQEAVGLARSGDIIIIAGKGH 421
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
ETYQI DK FDDREE+R+A+
Sbjct: 422 ETYQILCDKTIHFDDREEARQAV 444
>gi|227824965|ref|ZP_03989797.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
gi|226905464|gb|EEH91382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
Length = 496
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 140/380 (36%), Positives = 220/380 (57%), Gaps = 22/380 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ I GD S TTPD V +Q + +M G + VVME SSH LAL R
Sbjct: 132 GHKVGLIGTINIMI-GDEVEASHNTTPDVVDLQRTLCRMADAGCDYVVMEVSSHALALNR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK--VVNIDDPNATS 119
+ +++D A TN+T+DH+DFH T E YR AKA LF+ + + + K + N+DD A+S
Sbjct: 191 VAGIEYDTAALTNITQDHLDFHKTMENYREAKALLFTHLHEGRKKGKTAIFNMDD--ASS 248
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ V+T+ + + DV+P++F + ++ ++TP G +++ + G N+YN
Sbjct: 249 PLIMNRVKTKVMTYG-KARTNDVYPIRFHVGAKHMELSLHTPEGNMDLRLHITGEFNVYN 307
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
++ AV +A G +DIVRG++ VPGR +LID Q F VIVDYAHTPD L +L +
Sbjct: 308 VMTAVCAALAEGLKHDDIVRGLDNFAGVPGRFQLIDAGQPFTVIVDYAHTPDGLDNVLRT 367
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
R++ R+ V GC G+ D KRP+M K+A + +D+ ++TSDNP +EDP I+ D+ G
Sbjct: 368 ARQITKGRLWAVFGCGGDRDAKKRPIMGKLALELADILVVTSDNPRSEDPDTIIRDIETG 427
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ +N P ++ RR A++ A++ D++++AGKGHE YQ
Sbjct: 428 ----------FSDN------PQHKEIYTISDRREAIQFAISHARPEDVIMIAGKGHENYQ 471
Query: 360 IEGDKKEFFDDREESREALQ 379
I D+ FDD E R+ +
Sbjct: 472 ILKDRTIHFDDGEVVRDFFR 491
>gi|222528779|ref|YP_002572661.1| UDP-N-acetylmuramyl tripeptide synthetase [Caldicellulosiruptor
bescii DSM 6725]
gi|222455626|gb|ACM59888.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
bescii DSM 6725]
Length = 486
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 151/382 (39%), Positives = 219/382 (57%), Gaps = 28/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I G ++E+ TTP++ +Q L +M G ++VVME SSH L L R
Sbjct: 133 GQKVGLIGTIKNMI-GSREIEAQHTTPESYDLQKLFWQMKSEGVDSVVMEVSSHSLELFR 191
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ DFD+ VFTNLT+DH+DFHGT E Y AK KLF ++VVN DD I
Sbjct: 192 VYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFGM-----SKKRVVNADDMWGKRII 246
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ PD VT+A ++ A V +L + + Q + EI+ + G +IYN L
Sbjct: 247 -EMYPDS--VTYA-KDSDAQVFARNIKLFVNKNQFELWYNGEKEEITLNIPGVFSIYNSL 302
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA A I++G L+DI +G+E + AVPGR E+++ Q F V++DYAHTPD L L+ +V
Sbjct: 303 AASACCISLGIKLDDIKKGLENLKAVPGRFEIVESNQKFTVVIDYAHTPDGLLNLMKTVN 362
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
E+ R + + GC G+ DR KRP+M +IA +D I+TSDNP EDPL I+ D+L G+
Sbjct: 363 EVTDGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTSDNPRTEDPLKIIADILEGIK 422
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
T EY+ +P+ R A++ A+ E D +V+AGKGHETYQI
Sbjct: 423 KTNVEYV---------VIPD---------RYEAIKYAIKNARENDFIVLAGKGHETYQIL 464
Query: 362 GDKKEFFDDREESREALQYVDE 383
D+ FD+RE + L+ + E
Sbjct: 465 KDRTIPFDEREVVKNILKEIRE 486
>gi|424866321|ref|ZP_18290162.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Leptospirillum sp. Group II 'C75']
gi|124515893|gb|EAY57402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Leptospirillum rubarum]
gi|387223118|gb|EIJ77490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Leptospirillum sp. Group II 'C75']
Length = 509
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 152/378 (40%), Positives = 206/378 (54%), Gaps = 20/378 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL G++ +V + + G + E+P+TTP A+ +Q+L A+ L NG ++V ME SSH L R
Sbjct: 146 GLPCGLIGTVVFDV-GHEETEAPQTTPGAIRIQSLFAESLRNGLKSVSMEVSSHALDQDR 204
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFS-RMVDPERHRKVVNIDDPNATSF 120
+ +F + FTNLTRDH+D+H T E Y AK KL D VV+ D
Sbjct: 205 LAGTNFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGSHPVAVVHTGDEYGARL 264
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ D V E A + PL+ ++ L + + T G + I S L G +N+ NI
Sbjct: 265 AKELERDGRRVLTYGEGADAMIRPLRVDVGLSGIRGTLRTSRGEMSIDSSLSGHYNLQNI 324
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L AV G A+G +E I GI + VPGR E +D F VIVDYAHT DALS LL +V
Sbjct: 325 LGAVGCGEALGLSMEKIAEGIHSLPGVPGRFERVDSPTGFSVIVDYAHTDDALSNLLSAV 384
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R + ++ITV GC G+ DRGKRP M +A SD +LTSDNP E+P ILD++ G+
Sbjct: 385 RPVTRGKVITVFGCGGDRDRGKRPRMGSVAGRLSDFVVLTSDNPRTENPESILDEIEPGL 444
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
T Y++ + R+ A+ A+ GD VV+AGKGHE YQI
Sbjct: 445 RETGTPYVRVSD------------------RKSAIFEAIRRARPGDAVVIAGKGHENYQI 486
Query: 361 EGDKKEFFDDREESREAL 378
G +K FDDRE +R AL
Sbjct: 487 LGKQKIHFDDREIARLAL 504
>gi|410478390|ref|YP_006766027.1| UDP-N-acetylmuramyl tripeptide synthase [Leptospirillum ferriphilum
ML-04]
gi|406773642|gb|AFS53067.1| UDP-N-acetylmuramyl tripeptide synthase [Leptospirillum ferriphilum
ML-04]
Length = 509
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 152/378 (40%), Positives = 206/378 (54%), Gaps = 20/378 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL G++ +V + + G + E+P+TTP A+ +Q+L A+ L NG ++V ME SSH L R
Sbjct: 146 GLPCGLIGTVVFDV-GHEETEAPQTTPGAIRIQSLFAESLRNGLKSVSMEVSSHALDQDR 204
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLF-SRMVDPERHRKVVNIDDPNATSF 120
+ +F + FTNLTRDH+D+H T E Y AK KL D VV+ D
Sbjct: 205 LAGTNFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGSHPVAVVHTGDEYGARL 264
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ D V E A + PL+ ++ L + + T G + I S L G +N+ NI
Sbjct: 265 AKELERDGRRVLTYGEGADAMIRPLRVDVGLSGIRGTLRTSRGEMSIDSSLSGHYNLQNI 324
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L AV G A+G +E I GI + VPGR E +D F VIVDYAHT DALS LL +V
Sbjct: 325 LGAVGCGEALGLSMEKIAEGIHSLPGVPGRFERVDSPTGFSVIVDYAHTDDALSNLLSAV 384
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R + ++ITV GC G+ DRGKRP M +A SD +LTSDNP E+P ILD++ G+
Sbjct: 385 RPVTRGKVITVFGCGGDRDRGKRPRMGSVAGRLSDFVVLTSDNPRTENPESILDEIEPGL 444
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
T Y++ + R+ A+ A+ GD VV+AGKGHE YQI
Sbjct: 445 RETGTPYVRVSD------------------RKSAIFEAIRRARPGDAVVIAGKGHENYQI 486
Query: 361 EGDKKEFFDDREESREAL 378
G +K FDDRE +R AL
Sbjct: 487 LGKQKIHFDDREIARLAL 504
>gi|352684905|ref|YP_004896890.1| UDP-N-acetylmuramyl tripeptide synthetase [Acidaminococcus
intestini RyC-MR95]
gi|350279560|gb|AEQ22750.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
intestini RyC-MR95]
Length = 489
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/380 (36%), Positives = 220/380 (57%), Gaps = 22/380 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ I GD S TTPD V +Q + +M G + VVME SSH LAL R
Sbjct: 125 GHKVGLIGTINIMI-GDEVEASHNTTPDVVDLQRTLCRMADAGCDYVVMEVSSHALALNR 183
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK--VVNIDDPNATS 119
+ +++D A TN+T+DH+DFH T E YR AKA LF+ + + + K + N+DD A+S
Sbjct: 184 VAGIEYDTAALTNITQDHLDFHKTMENYREAKALLFTHLHEGRKKGKTAIFNMDD--ASS 241
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ V+T+ + + DV+P++F + ++ ++TP G +++ + G N+YN
Sbjct: 242 PLIMNRVKTKVMTYG-KARTNDVYPIRFHVGAKHMELSLHTPEGNMDLRLHITGEFNVYN 300
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
++ AV +A G +DIVRG++ VPGR +LID Q F VIVDYAHTPD L +L +
Sbjct: 301 VMTAVCAALAEGLKHDDIVRGLDNFAGVPGRFQLIDAGQPFTVIVDYAHTPDGLDNVLRT 360
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
R++ R+ V GC G+ D KRP+M K+A + +D+ ++TSDNP +EDP I+ D+ G
Sbjct: 361 ARQITKGRLWAVFGCGGDRDAKKRPIMGKLALELADILVVTSDNPRSEDPDTIIRDIETG 420
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ +N P ++ RR A++ A++ D++++AGKGHE YQ
Sbjct: 421 ----------FSDN------PQHKEIYTISDRREAIQFAISHARPEDVIMIAGKGHENYQ 464
Query: 360 IEGDKKEFFDDREESREALQ 379
I D+ FDD E R+ +
Sbjct: 465 ILKDRTIHFDDGEVVRDFFR 484
>gi|302871364|ref|YP_003840000.1| UDP-N-acetylmuramyl tripeptide synthetase [Caldicellulosiruptor
obsidiansis OB47]
gi|302574223|gb|ADL42014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
obsidiansis OB47]
Length = 500
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 220/392 (56%), Gaps = 48/392 (12%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I G ++E+ TTP++ +Q L +M G ++VVME SSH L L R
Sbjct: 147 GQKVGLIGTIKNMI-GSKEIEAQHTTPESYDLQKLFWQMKSEGVDSVVMEVSSHSLELFR 205
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
DFD+ VFTNLT+DH+DFHGT E Y +AK KLF ++VVN DD I
Sbjct: 206 VYACDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLFGM-----SKKRVVNADDSWGKRII 260
Query: 122 AQGNPDVPVVTFA--------MENKKADVHPLKFELSLFETQ--VLVNTPHGILEISSGL 171
+ PD +T+A +N K V+ +F+L + +L+N P
Sbjct: 261 -EMYPDC--ITYAKDSDANVCAQNIKLFVNKNQFDLYYNNKKENILLNIP---------- 307
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD 231
G +IYN LAA A I +G L+ I +G+EE+ AVPGR E+++ Q F V++DYAHTPD
Sbjct: 308 -GLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIVESNQKFTVVIDYAHTPD 366
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
L L+ +V E+A R + + GC G+ DR KRP+M +IA +D I+TSDNP EDPL
Sbjct: 367 GLLNLMKTVNEVADGRKVLLFGCGGDRDRTKRPIMGEIAGKMADFVIVTSDNPRTEDPLK 426
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
I+ D+L G+ T EY+ +P+ R A++ A+ E D +V+A
Sbjct: 427 IIADILEGIKKTNVEYV---------VIPD---------RYEAIKYAIKNARENDFIVLA 468
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQYVDE 383
GKGHETYQI D+ FD+RE + L+ + E
Sbjct: 469 GKGHETYQILKDRTIPFDEREVVKNILKELRE 500
>gi|206602137|gb|EDZ38619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
ligase [Leptospirillum sp. Group II '5-way CG']
Length = 509
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 152/381 (39%), Positives = 205/381 (53%), Gaps = 20/381 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL G++ +V + + GD + E+P+TTP A+ +Q+L A+ L NG ++V ME SSH L R
Sbjct: 146 GLPCGLIGTVVFDV-GDGETEAPQTTPGAIQIQSLFAESLQNGLKSVSMEVSSHALDQDR 204
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFS-RMVDPERHRKVVNIDDPNATSF 120
+ F + FTNLTRDH+D+H T E Y AK KL D VV+ D
Sbjct: 205 LAGTIFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGTHPVAVVHTGDEYGARL 264
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ D V E A + P+ ++ L + + T G + I S L G +N+ NI
Sbjct: 265 AKELERDGRRVLTYGEGADAMIRPIHVDVGLSGIRGTLRTSRGEMSIDSSLSGHYNLQNI 324
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L AV G A+G E I GI + VPGR E +D F VIVDYAHT DALS LL +V
Sbjct: 325 LGAVGCGEALGLSTEKIAEGIHSLSGVPGRFERVDSPAGFSVIVDYAHTDDALSNLLSAV 384
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R + ++ITV GC G+ DRGKRP M +A SD +LTSDNP E+P ILD++ G+
Sbjct: 385 RPVTRGKVITVFGCGGDRDRGKRPRMGNVAGRLSDFVVLTSDNPRTENPESILDEIEPGL 444
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
T Y++ + R+ A+ A+ GD VV+AGKGHE YQI
Sbjct: 445 RETGTPYVRVSD------------------RKSAIFDAIRRARSGDAVVIAGKGHENYQI 486
Query: 361 EGDKKEFFDDREESREALQYV 381
G +K FDDRE +R AL +
Sbjct: 487 LGKEKIHFDDREMARLALAEI 507
>gi|304404005|ref|ZP_07385667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
curdlanolyticus YK9]
gi|304346983|gb|EFM12815.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
curdlanolyticus YK9]
Length = 495
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 153/384 (39%), Positives = 219/384 (57%), Gaps = 25/384 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ G N L TTP A+ +Q +A M G ++ ME SSH L GR
Sbjct: 127 GQSAGVIGTIETRYAG-NTLPMSGTTPGALELQQYLAAMAEAGVDSCAMEVSSHALDQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM------VDPERHRKVVNIDDP 115
F I VFTNLT+DH+D+HGT E+Y AK+ LFSR+ + ER V+N DD
Sbjct: 186 TWGCRFRIGVFTNLTQDHLDYHGTMEKYAAAKSLLFSRLGNTYSEAEAERSYAVLNADD- 244
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+A+ A V ++T+ ++ ++ADV ++ T + T G +IS ++G+
Sbjct: 245 SASDLFANAAA-VEILTYGID-READVRASDIRITSRGTTFRLETFRGGADISIRMVGKF 302
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAA +V + G +E I + +E + VPGR E +D Q + VIVDYAHTPD L
Sbjct: 303 NVYNALAATSVALLEGISIEAIKQSLEALPGVPGRVESVDAGQPYAVIVDYAHTPDGLEN 362
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +V+E RII V GC G+ DR KRP+M +IA +D+ ++TSDNP +E+P IL D
Sbjct: 363 VLRTVKEFVEGRIICVFGCGGDRDRTKRPIMGRIAAKYADICVITSDNPRSENPHAILLD 422
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
++E LK +P+ L + D RR A+ AV M GD+V++AGKGH
Sbjct: 423 --------VEEGLK------ADGIPSNRYLLIED-RRHAIEKAVEMASPGDVVLIAGKGH 467
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQI G K FDDR + EA++
Sbjct: 468 ETYQIIGPKTFDFDDRLVAEEAIR 491
>gi|427412447|ref|ZP_18902639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella ratti
ACS-216-V-Col6b]
gi|425716254|gb|EKU79238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella ratti
ACS-216-V-Col6b]
Length = 494
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 217/382 (56%), Gaps = 23/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V I GD TTPD V +Q+++++M+ G +ME SSH LAL R
Sbjct: 130 GYKVGIIGTVHVMI-GDKTYPIHNTTPDVVDLQHILSQMVAEGVTHCIMEVSSHALALNR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
+ V++D AVFTNLT+DH+DFH T E Y AK KLF ++ P +H+K V+NIDDP
Sbjct: 189 VAGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQHKKNKGAVINIDDPYG 248
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+A+ + P++T+ + K + ++ + + I + G N+
Sbjct: 249 ERVMAKNSA--PLITYGTKGK-GTLEGENLTITAKTSAYDIVYEGKEYPIHMRITGLFNV 305
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ + G +EDI++ + + AVPGR EL++E Q F V+VDYAHTPD L +L
Sbjct: 306 YNTLAAIGACLFEGVSMEDIIKALSDFTAVPGRFELVEEGQPFAVVVDYAHTPDGLENIL 365
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ +++ R II V GC G+ D KRP+M +IA D +TSDNP EDP I+ +
Sbjct: 366 QTAQKIVERHIIVVFGCGGDRDVTKRPIMGRIAAQYGDGIFVTSDNPRTEDPEKIVAQVA 425
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV +E L+ E Y + + RR A+ A+ + GD+V++AGKGHE
Sbjct: 426 EGV----KEGLR--EGSVYTVITD---------RRSAIHAAIKAAKAGDVVIIAGKGHED 470
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI DK FDDRE +REAL+
Sbjct: 471 YQILKDKTIHFDDREVAREALK 492
>gi|110800485|ref|YP_696545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens ATCC 13124]
gi|110675132|gb|ABG84119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens ATCC 13124]
Length = 484
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 144/383 (37%), Positives = 217/383 (56%), Gaps = 34/383 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ YI G+ K+++ RTTP++ + L M+ G E VME SSH L L R
Sbjct: 129 GFMTGLIGTIANYI-GNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP---NAT 118
+ F+ +FTNLTRDH+DFH T E Y NAK KLF R + ++N+DDP N
Sbjct: 188 VYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER-----SNHSIINLDDPYGANIV 242
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
I + V F++E K++D + + ++ VN I E S + G +NIY
Sbjct: 243 KDIEERGLKTKVSAFSIE-KESDFKAFEIKSHSNGSEFKVNL-ESIEEFSINIPGEYNIY 300
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTPDALSRL 236
N L + + P++ I G+ +V +PGRCEL+ +E+ + +I+DYAHTPD L +
Sbjct: 301 NSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENI 359
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V+ R+I+V GC G+ D+ KRP M KI + SD+ I+TSDNP +E+P+DI++D+
Sbjct: 360 LSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDI 419
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ PL N + R+ A+R A+ M EGD++V+AGKGHE
Sbjct: 420 V-------------------KPL-NYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI D+ FD+RE + L+
Sbjct: 460 TYQILKDETIHFDEREVVYDILE 482
>gi|392394928|ref|YP_006431530.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390526006|gb|AFM01737.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 495
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 147/379 (38%), Positives = 208/379 (54%), Gaps = 24/379 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I G +L RTTP+A+ +Q L+ +M+ G + VME SSH L LGR
Sbjct: 134 GKKVGLIGTLGARIAG-RELPGSRTTPEAIDLQKLLREMVDEGVQYAVMEVSSHALVLGR 192
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
+FD +F+NLT+DH+D+H T EEY AKA LFS + + + V+N DDP ++
Sbjct: 193 VKGCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAILFSGLTGAKEPKVGVINGDDPAGSTL 252
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I PVVT+ ++ + D +L+ + V +++ G ++YN
Sbjct: 253 IRLSA--APVVTYGVKAEHLDYRAEDIQLTADGVKFTVRFKGQSVQVEYSTPGMFSVYNA 310
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA A G+ G + + + V VPGR E + Q F VIVDYAHTPD L + +
Sbjct: 311 LAAFAWGVESGRSPQQVREALASVLGVPGRFESVRMGQPFQVIVDYAHTPDGLENVCKTA 370
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
+E R+ITV GC G+ D+GKRP M IA + SD I+TSDNP EDP I+ D+L G+
Sbjct: 371 QEFTQGRLITVFGCGGDRDKGKRPQMGAIAEELSDHVIVTSDNPRTEDPRQIIRDILEGI 430
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
E + Y N RR A+ CA + +EGD V++AGKGHE YQI
Sbjct: 431 -----EGIDYTANVN---------------RREAIECACLLAKEGDTVLIAGKGHEDYQI 470
Query: 361 EGDKKEFFDDREESREALQ 379
G FDDRE +REAL+
Sbjct: 471 IGKDVFPFDDREVAREALR 489
>gi|312134656|ref|YP_004001994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
owensensis OL]
gi|311774707|gb|ADQ04194.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
owensensis OL]
Length = 495
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 149/394 (37%), Positives = 219/394 (55%), Gaps = 52/394 (13%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I G ++E+ TTP++ +Q L +M + G ++VVME SSH L L R
Sbjct: 142 GQKVGLIGTIKNMI-GSKEIEAQHTTPESYDLQKLFWQMRNEGVDSVVMEVSSHSLELFR 200
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDD------- 114
DFD+ VFTNLT+DH+DFHGT E Y +AK KLF ++V+N DD
Sbjct: 201 VYASDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLFGM-----SKKRVINADDSWGKRII 255
Query: 115 ---PNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFET--QVLVNTPHGILEISS 169
P+ ++ N T N K V+ +F+L + ++L+N P
Sbjct: 256 EMYPDCMTYAKDSNA-----TVCARNIKLYVNKNQFDLWYNDKKEEILLNIP-------- 302
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHT 229
G +IYN LAA A I +G L+ I +G+EE+ AVPGR E+++ + F V++DYAHT
Sbjct: 303 ---GLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIVESNEKFTVVIDYAHT 359
Query: 230 PDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDP 289
PD L L+ +V E+A R + + GC G+ DR KRP+M +IA +D I+TSDNP EDP
Sbjct: 360 PDGLLNLMRTVNEVADGRKVLLFGCGGDRDRAKRPIMGEIAGRMADFVIVTSDNPRTEDP 419
Query: 290 LDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVV 349
L I+ D+L G+ T EY+ +P+ R A++ A+ E D +V
Sbjct: 420 LKIIADILEGIKKTNVEYV---------VIPD---------RYEAIKYAIKNARENDFIV 461
Query: 350 VAGKGHETYQIEGDKKEFFDDREESREALQYVDE 383
+AGKGHETYQI D+ FD+RE + L+ + E
Sbjct: 462 LAGKGHETYQILKDRTIPFDEREVVKNILKELRE 495
>gi|374604220|ref|ZP_09677187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Paenibacillus dendritiformis C454]
gi|374390206|gb|EHQ61561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Paenibacillus dendritiformis C454]
Length = 515
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 153/387 (39%), Positives = 223/387 (57%), Gaps = 31/387 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ I G L + T +Q + KM T+ VME +S GL +GR
Sbjct: 143 GYRTGLMGNIGTKI-GRELLHTDINTQPPHRLQANLRKMKDLSTDYCVMEVTSQGLHMGR 201
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHRK---VVNIDDP 115
D+ IAV TN+T+DH+D+HGT E Y AK LFS + P+R R+ ++N DD
Sbjct: 202 VLGCDYRIAVLTNVTQDHLDYHGTMENYMAAKGLLFSGLGNSFSPDRARRKFAILNADDD 261
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+ F + V+T+ + +K ADV + +L+ T +V++ G + + L+G
Sbjct: 262 ASAYF--RDLTSAQVITYGI-HKAADVRAAEIQLTSRGTTFMVHSFAGTMAMELKLVGMF 318
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAA++ +A PL+ +G+ ++ +VPGR E+IDE Q F V+ DYAHTPD L +
Sbjct: 319 NVYNALAAISTALAERIPLDVNRQGLADLTSVPGRMEVIDEGQEFLVLADYAHTPDGLDK 378
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L ++RE A +IITV GC G+ DR KRPLM ++A SDV I+TSDNP +EDP+ IL D
Sbjct: 379 ALAALREFAEGKIITVFGCGGDRDRTKRPLMGQLAAKYSDVVIITSDNPRSEDPVRILKD 438
Query: 296 MLAGV---GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ G+ G Y + + D R+ VR A+ M GD+V++AG
Sbjct: 439 IERGLHEHGACEAAY-----------------VLIEDRRQAIVR-AIEMAGPGDIVLIAG 480
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHETYQ+ D FDDREE+REA++
Sbjct: 481 KGHETYQLINDCALHFDDREEAREAIR 507
>gi|229173249|ref|ZP_04300796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus MM3]
gi|228610219|gb|EEK67494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus MM3]
Length = 500
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 218/389 (56%), Gaps = 39/389 (10%)
Query: 2 GLRTGMLSS------VSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSH 55
G +TG++ + +Y N ESP + M++N HN T+ VME +S
Sbjct: 137 GFQTGIMGNNGVKIGSKWYPTDINTQESPALQRNLQMMKN------HN-TDYCVMEVTSQ 189
Query: 56 GLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD----PERHRKVVN 111
GL + R +F IAVFTNLT+DH+D+HGT EEY++ K LFSR+ + ++ ++N
Sbjct: 190 GLHMERVKGCNFKIAVFTNLTQDHLDYHGTFEEYKHVKGLLFSRLGNDFSATDKKIAILN 249
Query: 112 IDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGL 171
DDP+ F + V+T+ + N ADV LS Q LV++ +G +EI+ L
Sbjct: 250 ADDPSVEYF--KKVTSAEVITYGINNG-ADVQAKSITLSSKGIQFLVSSFNGEIEINLNL 306
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD 231
+GR N+YN LA + + G PL +I + V ++ GR E+IDE Q F VIVDYAH+PD
Sbjct: 307 VGRFNVYNALAVITATLVEGIPLTNISDSLSHVKSIEGRMEIIDENQDFLVIVDYAHSPD 366
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
AL +L ++ E + +IITV GC G+ D KRP+M +IA SD +TSDNP +EDP
Sbjct: 367 ALENVLSTISEFSKAKIITVFGCGGDRDAKKRPIMGEIAGGYSDFVYITSDNPRSEDPQA 426
Query: 292 ILDDMLAGVGWTMQEYLKYG-ENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVV 350
I+ D+ G++ L Y E D R +A+ A+ M D+V++
Sbjct: 427 IMKDIEK--GFSQNNNLNYKVEVD----------------RELAINHAIQMASSNDIVLI 468
Query: 351 AGKGHETYQIEGDKKEFFDDREESREALQ 379
AGKGHETYQI D FDD+E +R+A++
Sbjct: 469 AGKGHETYQILKDSTIHFDDKEIARQAIK 497
>gi|452990665|emb|CCQ98189.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Clostridium ultunense Esp]
Length = 495
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 218/389 (56%), Gaps = 40/389 (10%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ TG++ ++ I GD + TTP+++ +Q + +M+ G VME SSH L++GR
Sbjct: 131 GIPTGLIGTIETVI-GDEHFPAKNTTPESIELQRMFKRMVDKGLTHCVMEVSSHALSMGR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHRKVVNIDDPNAT 118
+ F A+FTNLT+DH+D+HGT E Y AK LF++M +P ++N DD +
Sbjct: 190 VRGIPFSQAIFTNLTQDHLDYHGTLEAYTQAKGLLFAQMGNAYEPRVRPVILNADDETSR 249
Query: 119 SFIAQGNPDVPVVTFAMENK--------KADVHPLKFELSLFETQVLVNTPHGILEISSG 170
F + PV+T+ +E + K D + F L L++ + P +
Sbjct: 250 YFASITAQ--PVITYGIEKESDIRAVDVKTDEEGISFRLILWDGR---EIPARLF----- 299
Query: 171 LLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTP 230
L+GR N+YN LAA+ + G P+E + I EV + GR E + Q F VIVDYAHTP
Sbjct: 300 LMGRFNLYNALAAITSTLFQGIPVEIGLEAIREVHGINGRFERVRAGQDFTVIVDYAHTP 359
Query: 231 DALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPL 290
D L +L ++R+ A RI+ VVG GE DRGKRP M ++A +++ +LTSDNP EDPL
Sbjct: 360 DGLENVLSTIRQFAKGRILCVVGAGGERDRGKRPKMARVAQSYAEILLLTSDNPRREDPL 419
Query: 291 DILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVV 350
IL +M AG L GE + +P+ RR A+ AV + GD++++
Sbjct: 420 VILKEMEAG--------LIPGEK-HVEVIPD---------RREAIERAVELARPGDVLLI 461
Query: 351 AGKGHETYQIEGDKKEFFDDREESREALQ 379
AGKGHETYQI G + FDDRE REA++
Sbjct: 462 AGKGHETYQILGTQVIHFDDREVVREAIR 490
>gi|298492553|ref|YP_003722730.1| UDP-N-acetylmuramyl tripeptide synthetase ['Nostoc azollae' 0708]
gi|298234471|gb|ADI65607.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708]
Length = 494
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 205/356 (57%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A+ + G E VME SSH LA R F++AVFTNLT+DH+D+H
Sbjct: 156 TTPFAVDLQQRLAQAVDAGCEFGVMEVSSHALAQDRVFGCPFEVAVFTNLTQDHLDYHQD 215
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKA LFS D + R ++N DD I G V T+++ N AD+
Sbjct: 216 MEDYFGAKALLFSP--DYLQGRAIINADDEYGQRLIT-GLSKERVWTYSVNNHHADLRMS 272
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+++TP G + SS L+G++N+ N+LAAVA + +G L+ + I +
Sbjct: 273 DLNYQPIGVSGILHTPKGDVAFSSPLVGQYNLENLLAAVAAVLHLGLDLQLVANAISKFT 332
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I + VIVDYAHTPD+L LL SVR P RII V GC G+ DR KR
Sbjct: 333 GVPGRMERVQISHNKDVSVIVDYAHTPDSLGNLLKSVRAFIPGRIICVFGCGGDRDRTKR 392
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA + +D+ ++TSDNP EDP I++D+LAG+ T+Q
Sbjct: 393 PKMGKIAAELADIAVVTSDNPRTEDPERIIEDILAGIPDTLQP----------------- 435
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+ + D R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++REALQ
Sbjct: 436 -MVICD-RATAIRAAILEAKPGDGVLLAGKGHEDYQILGTEKIHFDDREQAREALQ 489
>gi|110803799|ref|YP_699145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens SM101]
gi|110684300|gb|ABG87670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens SM101]
Length = 484
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 217/383 (56%), Gaps = 34/383 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ YI G+ K+++ RTTP++ + L M+ G E VME SSH L L R
Sbjct: 129 GFMTGLIGTIANYI-GNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP---NAT 118
+ F+ +FTNLTRDH+DFH T E Y NAK KLF R + ++N+DDP N
Sbjct: 188 VYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER-----SNHSIINLDDPYGANIV 242
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
I + V TF++E K++D + + ++ VN + + S + G +N+Y
Sbjct: 243 KDIEERGVKTKVSTFSIE-KESDFKAFEIKSHSNGSEFKVNLEE-VEDFSINIPGEYNVY 300
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTPDALSRL 236
N L + + P+ I G+ +V +PGRCEL+ +E+ + +I+DYAHTPD L +
Sbjct: 301 NSLGCIICAYNLNIPMNKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENI 359
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V+ R+I+V GC G+ D+ KRP M KI + SD+ I+TSDNP +E+P+DI++D+
Sbjct: 360 LSTVKAFTRNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDI 419
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ PL N + R+ A+R A+ M EGD++V+AGKGHE
Sbjct: 420 V-------------------KPL-NYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI D+ FD+RE + L+
Sbjct: 460 TYQILKDETIHFDEREVVYDILE 482
>gi|317121703|ref|YP_004101706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermaerobacter marianensis DSM 12885]
gi|315591683|gb|ADU50979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermaerobacter marianensis DSM 12885]
Length = 503
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 162/385 (42%), Positives = 218/385 (56%), Gaps = 32/385 (8%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ +V + I G L RTTP+A +Q L+A M G VVME SSH L L R +
Sbjct: 132 TGLIGTV-HNIIGGRSLPVERTTPEAADLQKLLAAMRDAGLTHVVMEVSSHALTLQRVAG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM--------VDPERHRKVVNIDDPN 116
FD+ VFTNLT+DH+DFH + E+Y AKA+LF+R+ V P V+N DDP
Sbjct: 191 CAFDVGVFTNLTQDHLDFHASMEDYAAAKARLFARLGRNEIPGTVKPGPKAAVINADDPW 250
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
T F+A PV+T+ + + ADV + + ++ T G + + L GR N
Sbjct: 251 GT-FMAD-RSSAPVITYGI-RQAADVTARDVVVEPGGVRFVLGTRDGEVPVRLRLTGRFN 307
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN LAA G+A+G + RG+E + AVPGR E ID Q F V+VDYAHTPD L +
Sbjct: 308 VYNALAAAGAGLALGIDPATVARGLESLPAVPGRLERIDRGQPFTVLVDYAHTPDGLENV 367
Query: 237 LDSVRELAPR-RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L +VRE+A + R++ V GC G+ DRGKRP M IA +D T+LTSDNP +EDP I+DD
Sbjct: 368 LSTVREMAGQGRVLCVFGCGGDRDRGKRPQMGAIAARLADYTVLTSDNPRSEDPEAIIDD 427
Query: 296 MLAGVGWT-MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
+ AGV Y + E R A+R + + GD+VV+AGKG
Sbjct: 428 IEAGVRQVPGAAYERVTE------------------RAAAIRRVLELARPGDVVVIAGKG 469
Query: 355 HETYQIEGDKKEFFDDREESREALQ 379
HE YQI D+ FDDRE + AL+
Sbjct: 470 HEDYQIFADRTIHFDDREVAATALE 494
>gi|427727681|ref|YP_007073918.1| UDP-N-acetylmuramyl tripeptide synthetase [Nostoc sp. PCC 7524]
gi|427363600|gb|AFY46321.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nostoc sp. PCC 7524]
Length = 498
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 149/358 (41%), Positives = 204/358 (56%), Gaps = 28/358 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A+ + G E VME SSH LA GR F++ VF+NLT+DH+D+H
Sbjct: 160 TTPFAVELQQQLAQAVKAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHRD 219
Query: 86 EEEYRNAKAKLFSRMVDPE--RHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVH 143
E+Y AKA LFS PE + R ++N DDP IA NP V ++++ + AD+
Sbjct: 220 MEDYFGAKALLFS----PEYLKGRAIINADDPYGKRLIAALNP-AKVWSYSVNDSSADLW 274
Query: 144 PLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEE 203
++TP G + S L+G++N+ N+LAAV + +G L+ + I E
Sbjct: 275 MSDLSYEPNGVSGTLHTPEGEVTFRSPLVGQYNLENLLAAVGAVLHLGLDLQSVAAAIPE 334
Query: 204 VDAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRG 261
VPGR E I EQ VIVDYAHTPD+L LL + R P ++I V GC G+ DR
Sbjct: 335 FPGVPGRMERVQISPEQDISVIVDYAHTPDSLENLLKAARPFIPGKMICVFGCGGDRDRT 394
Query: 262 KRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPN 321
KRP M KIA + +DV ++TSDNP EDP IL+D+L G+ T++ P+
Sbjct: 395 KRPKMGKIAAELADVAVVTSDNPRTEDPERILEDILGGIPDTIE------------PMVI 442
Query: 322 GHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
G R A+R A+ + GD V++AGKGHE YQI G +K FDDRE +R+ALQ
Sbjct: 443 GD-------RATAIRTAILQAQPGDGVLLAGKGHEDYQILGTEKIHFDDREHARDALQ 493
>gi|379723226|ref|YP_005315357.1| UDP-N-acetylmuramyl tripeptide synthetase [Paenibacillus
mucilaginosus 3016]
gi|378571898|gb|AFC32208.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
mucilaginosus 3016]
Length = 444
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 208/382 (54%), Gaps = 21/382 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ I G+ T +A+ +Q ++ +M GT+ +ME SSHGL +GR
Sbjct: 75 GYRTGLMGNIHIKIGGEYLPNHATNTQEALELQKILRQMADAGTDYCLMEVSSHGLEMGR 134
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPN 116
F +FTNLT+DH+DFHGT E Y+ AK LFSR+ DP + R V D
Sbjct: 135 VKGCLFRSGIFTNLTQDHLDFHGTMERYQAAKGLLFSRLGNDYGADPAQRRFAVLNGDEE 194
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
A+S A+ + + ++N KADV E++ T+ T G EI + L+GR N
Sbjct: 195 ASSDYARLTA-AETIVYGIDNPKADVRAEGIEMTAQGTRFQCVTYRGTAEIRTRLVGRFN 253
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN+L +A +A G LE I + + +V GR E++D Q F V+VDYAHTPD L
Sbjct: 254 VYNVLGVIAAALAEGLELEGIAASLAGIASVEGRMEVVDAGQPFLVLVDYAHTPDGLENA 313
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V + A I V GC G+ DR KRPLM +A SD +TSDNP E+P IL D+
Sbjct: 314 LSTVSQFAEGSIYCVFGCGGDRDRAKRPLMGGVAAKYSDYIYVTSDNPRTENPEAILQDI 373
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ G+ + P + L R+ A+R AV + GD+V++AGKGHE
Sbjct: 374 VPGIEQAGLD-------------PASYELIAD--RKEAIRRAVERAQPGDIVLIAGKGHE 418
Query: 357 TYQIEGDKKEFFDDREESREAL 378
TYQ G K FDDR ++EA+
Sbjct: 419 TYQDIGGVKHPFDDRLVAKEAV 440
>gi|386725949|ref|YP_006192275.1| UDP-N-acetylmuramyl tripeptide synthetase [Paenibacillus
mucilaginosus K02]
gi|384093074|gb|AFH64510.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
mucilaginosus K02]
Length = 496
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 208/382 (54%), Gaps = 21/382 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ I G+ T +A+ +Q ++ +M GT+ +ME SSHGL +GR
Sbjct: 127 GYRTGLMGNIHIKIGGEYLPNHATNTQEALELQKILRQMADAGTDYCLMEVSSHGLEMGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPN 116
F +FTNLT+DH+DFHGT E Y+ AK LFSR+ DP + R V D
Sbjct: 187 VKGCLFRSGIFTNLTQDHLDFHGTMERYQAAKGLLFSRLGNDYGADPAQRRFAVLNGDEE 246
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
A+S A+ + + ++N KADV E++ T+ T G EI + L+GR N
Sbjct: 247 ASSDYARLTA-AETIVYGIDNPKADVRAEGIEMTAQGTRFQCVTYRGTAEIRTRLVGRFN 305
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN+L +A +A G LE I + + +V GR E++D Q F V+VDYAHTPD L
Sbjct: 306 VYNVLGVIAAALAEGLELEGIAASLAGIASVEGRMEVVDAGQPFLVLVDYAHTPDGLENA 365
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V + A I V GC G+ DR KRPLM +A SD +TSDNP E+P IL D+
Sbjct: 366 LSTVSQFAEGSIYCVFGCGGDRDRAKRPLMGGVAAKYSDYIYVTSDNPRTENPEAILQDI 425
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ G+ + P + L R+ A+R AV + GD+V++AGKGHE
Sbjct: 426 VPGIEQAGLD-------------PASYELIAD--RKEAIRRAVERAQPGDIVLIAGKGHE 470
Query: 357 TYQIEGDKKEFFDDREESREAL 378
TYQ G K FDDR ++EA+
Sbjct: 471 TYQDIGGVKHPFDDRLVAKEAV 492
>gi|373498371|ref|ZP_09588885.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fusobacterium sp. 12_1B]
gi|371961880|gb|EHO79496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fusobacterium sp. 12_1B]
Length = 483
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 213/385 (55%), Gaps = 46/385 (11%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+T + +V Y I GD +E+P TTP+++ + + + + G E +VME SSH L LGR
Sbjct: 128 KTARIGTVEYKI-GDEVIEAPNTTPESLDIVKMCKRSVEKGMEYLVMEVSSHALDLGRVD 186
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
++FD+++FTNLT DH+DFH T E+Y AK KLF+ M V+NIDD
Sbjct: 187 MLEFDVSMFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYGKRL--- 243
Query: 124 GNPDVPVVTFAMENK----------KADVHPLKFELSLFETQVLVNTPHGILEISSGLLG 173
+ + +++ M N+ D ++ + F T+ + +LG
Sbjct: 244 -SSEFGGISYGMHNEGRVRGKIVEFHGDGQEVELHIDAFSTRTKL-----------AILG 291
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
R+N+YN+L A+++ + +G E ++ I+E+ PGR EL++ Q F VIVDY+HT DAL
Sbjct: 292 RYNVYNVLGAISIALLLGIERETVLERIKELKGAPGRYELVNCGQDFTVIVDYSHTGDAL 351
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L S+ EL +IITV GC G+ D KRP+M +IA SD+ I+TSDNP EDP I+
Sbjct: 352 ENILKSINELKKGKIITVFGCGGDRDPSKRPVMGEIAERLSDIAIVTSDNPRTEDPHKIV 411
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
+ +L G+ G + + R A+ AV + EE D++++AGK
Sbjct: 412 EQVLEGM--------------------KGKNHIVEEDRDHAISKAVELAEEKDIILIAGK 451
Query: 354 GHETYQIEGDKKEFFDDREESREAL 378
GHETYQI G KK FDDRE +R +
Sbjct: 452 GHETYQILGRKKIHFDDREIARREI 476
>gi|337748310|ref|YP_004642472.1| UDP-N-acetylmuramyl tripeptide synthetase [Paenibacillus
mucilaginosus KNP414]
gi|336299499|gb|AEI42602.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
mucilaginosus KNP414]
Length = 496
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 208/382 (54%), Gaps = 21/382 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ I G+ T +A+ +Q ++ +M GT+ +ME SSHGL +GR
Sbjct: 127 GYRTGLMGNIHIKIGGEYLPNHATNTQEALELQKILRQMADAGTDYCLMEVSSHGLEMGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPN 116
F +FTNLT+DH+DFHGT E Y+ AK LFSR+ DP + R V D
Sbjct: 187 VKGCLFRSGIFTNLTQDHLDFHGTMERYQAAKGLLFSRLGNDYGADPAQRRFAVLNGDEE 246
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
A+S A+ + + ++N KADV E++ T+ T G EI + L+GR N
Sbjct: 247 ASSDYARLTA-AETIVYGIDNPKADVRAEGIEMTAQGTRFQCVTYRGTAEIRTRLVGRFN 305
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN+L +A +A G LE I + + +V GR E++D Q F V+VDYAHTPD L
Sbjct: 306 VYNVLGVIAAALAEGLELEGIAASLAGIASVEGRMEVVDAGQPFLVLVDYAHTPDGLENA 365
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V + A I V GC G+ DR KRPLM +A SD +TSDNP E+P IL D+
Sbjct: 366 LSTVSQFAEGSIYCVFGCGGDRDRAKRPLMGGVAAKYSDYIYVTSDNPRTENPEAILQDI 425
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ G+ + P + L R+ A+R AV + GD+V++AGKGHE
Sbjct: 426 VPGIEQAGLD-------------PASYELIAD--RKEAIRRAVERAQPGDIVLIAGKGHE 470
Query: 357 TYQIEGDKKEFFDDREESREAL 378
TYQ G K FDDR ++EA+
Sbjct: 471 TYQDIGGVKHPFDDRLVAKEAV 492
>gi|170755176|ref|YP_001781095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum B1 str. Okra]
gi|429247504|ref|ZP_19210747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum CFSAN001628]
gi|169120388|gb|ACA44224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum B1 str. Okra]
gi|428755458|gb|EKX78086.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum CFSAN001628]
Length = 483
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 151/392 (38%), Positives = 219/392 (55%), Gaps = 55/392 (14%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+L +++ YI G+ K+ES RTTP+++ +Q L M+ + VME SSH L L R
Sbjct: 131 GYKVGLLGTIANYI-GNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V+F A+FTNLT+DH+DFH T E Y N+K LF V+NIDD +
Sbjct: 190 VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA-----QNSVINIDDSYGEKVL 244
Query: 122 --AQGNPDVPVVTFAMENK---KAD---VHPLKFEL-SLFETQ---VLVNTPHGILEISS 169
A GN +T+ +E KA+ +H E ++F+ + + +N P
Sbjct: 245 KKALGNK----ITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP-------- 292
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYA 227
G++NIYN L ++ + G PL+ I +E++ +VPGRCE++ + G VIVDYA
Sbjct: 293 ---GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYA 349
Query: 228 HTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNE 287
HTPD L +L++ RE R+I+V GC G+ DR KRP+M K+ ++ SD+ I+TSDNP E
Sbjct: 350 HTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTE 409
Query: 288 DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347
DP I+ D+L G+ E D Y + RR A+R A+ M +E D+
Sbjct: 410 DPKLIIKDVLEGI-----------EKDNYIVVEG---------RRDAIRKAMEMAKENDV 449
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+VVAGKGHE YQI DK FD+RE E ++
Sbjct: 450 IVVAGKGHEDYQILKDKTIHFDEREVIEELIK 481
>gi|404367494|ref|ZP_10972857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fusobacterium ulcerans
ATCC 49185]
gi|313688586|gb|EFS25421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fusobacterium ulcerans
ATCC 49185]
Length = 483
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 213/385 (55%), Gaps = 46/385 (11%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+T + +V Y I GD +E+P TTP+++ + + + + G E +VME SSH L LGR
Sbjct: 128 KTARIGTVEYKI-GDEVIEAPNTTPESLDIVKMCKRSVEKGMEYLVMEVSSHALDLGRVD 186
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
++FD+++FTNLT DH+DFH T E+Y AK KLF+ M V+NIDD
Sbjct: 187 MLEFDVSMFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYGKRL--- 243
Query: 124 GNPDVPVVTFAMENK----------KADVHPLKFELSLFETQVLVNTPHGILEISSGLLG 173
+ + +++ M N+ D ++ + F T+ + +LG
Sbjct: 244 -SSEFGGISYGMHNEGRVRGRIVEFHGDGQEVELHIDAFSTRTKL-----------AILG 291
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
R+N+YN+L A+++ + +G E ++ I+E+ PGR EL++ Q F VIVDY+HT DAL
Sbjct: 292 RYNVYNVLGAISIALLLGIEKEIVLERIKELKGAPGRYELVNCGQNFTVIVDYSHTSDAL 351
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L S+ EL ++ITV GC G+ D KRP+M +IA SD+ I+TSDNP EDP I+
Sbjct: 352 ENILKSINELKKGKVITVFGCGGDRDASKRPVMGEIAERLSDIAIVTSDNPRTEDPHKIV 411
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
+ +L G+ G + + R A+ AV + EE D++++AGK
Sbjct: 412 EQVLEGM--------------------KGKNHIVEEDRDHAISKAVELAEEKDIILIAGK 451
Query: 354 GHETYQIEGDKKEFFDDREESREAL 378
GHETYQI G KK FDDRE +R +
Sbjct: 452 GHETYQILGRKKIHFDDREIARREI 476
>gi|383785031|ref|YP_005469601.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Leptospirillum ferrooxidans C2-3]
gi|383083944|dbj|BAM07471.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,
6-diaminopimelate ligase [Leptospirillum ferrooxidans
C2-3]
Length = 504
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 149/378 (39%), Positives = 207/378 (54%), Gaps = 20/378 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ TG++ +V + I GD +E+ +TTP + + L+ + G + ME SSH L GR
Sbjct: 142 GIPTGLIGTVVFDI-GDEVVEATQTTPGILDLHRLLGEAWLKGLRGMSMEVSSHALDQGR 200
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
S + F + FTNLTRDH+D+H E Y AK +LFSR H VVN DD
Sbjct: 201 VSGLSFSVVHFTNLTRDHLDYHPDMESYYQAKKRLFSRQNPDGSHPICVVNGDDSWGKRL 260
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I++ + E++ AD+ P + + + ++ TP G L I S + G +N+ NI
Sbjct: 261 ISELVLEKRTPIIIGESQDADISPKNVSIGIDGIRGVIRTPKGDLHIESPMTGHYNLMNI 320
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
+ + IA+ PL+ I RGI VPGR E+I ++ VIVDYAHT DAL LL +V
Sbjct: 321 MGVIGCSIALEIPLDLISRGISAQHGVPGRFEVIRSDRNISVIVDYAHTDDALENLLGAV 380
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R L ++ITV GC G+ DRGKRP M + A SD+ +LTSDNP EDP ILD++ +
Sbjct: 381 RPLCKGKVITVFGCGGDRDRGKRPRMGEKAGRLSDMVMLTSDNPRTEDPERILDEIEPAL 440
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
T Y + + R+ A+ A+++ GD VV+AGKGHE YQI
Sbjct: 441 KGTGTPYERIAD------------------RKRAIFRAISIARPGDSVVIAGKGHENYQI 482
Query: 361 EGDKKEFFDDREESREAL 378
G K FDDRE +REAL
Sbjct: 483 LGKIKHHFDDREVAREAL 500
>gi|344342789|ref|ZP_08773659.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Marichromatium purpuratum 984]
gi|343805341|gb|EGV23237.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Marichromatium purpuratum 984]
Length = 518
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 158/382 (41%), Positives = 201/382 (52%), Gaps = 38/382 (9%)
Query: 19 NKLESP-RTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTR 77
L SP TTPDA+ +Q L+ + G AV ME SSH L GR S F AVFTNL+R
Sbjct: 161 GALRSPTHTTPDAISLQALLESLRAQGARAVAMEVSSHALDQGRTSAARFSHAVFTNLSR 220
Query: 78 DHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTF---- 133
DH+D+HG Y AK +LF + P V+N+DDP + + P+V V +
Sbjct: 221 DHLDYHGDMTAYGEAKRRLF---LSPGLQWAVLNLDDPFSARLLETLAPEVQVAGYGIDP 277
Query: 134 --------AMENKKADVHPLKFELSL-FETQVLVNTPHGILEISSGLLGRHNIYNILAAV 184
A+ + + P L L E++ T LE+ GL+GR N N+LA +
Sbjct: 278 EGPTPSRCALRLRALAIEPRPHSLYLHVESRTTRRTERAELEV--GLIGRFNAANLLAVL 335
Query: 185 AVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELA 244
AV + G PLE VR + + VPGR E A V+VDYAHTPDAL + L +VRE
Sbjct: 336 AVMCSRGLPLERAVRELARIRGVPGRMECFGGSDAPLVVVDYAHTPDALEKALVNVREHT 395
Query: 245 PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTM 304
R+ITV GC G+ DRGKRPLM IA SD ILT DNP E P I+ D+L GVG
Sbjct: 396 SGRLITVFGCGGDRDRGKRPLMGSIAESLSDGLILTDDNPRTESPEAIVADILEGVG--- 452
Query: 305 QEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDK 364
R+ + R +A+R A+A+ GD VVVAGKGHETYQ GD
Sbjct: 453 ----------------ERERVRVEHQRGLAIRLAIALAGRGDAVVVAGKGHETYQDMGDL 496
Query: 365 KEFFDDREESREALQYVDELHQ 386
K F DR ++ EAL+ E H
Sbjct: 497 KRRFSDRAQAVEALREWREGHH 518
>gi|375309402|ref|ZP_09774683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus sp. Aloe-11]
gi|375078711|gb|EHS56938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus sp. Aloe-11]
Length = 506
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 154/387 (39%), Positives = 213/387 (55%), Gaps = 31/387 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ TG++ ++ +G TTP+AV +Q + M G + VME SSH L GR
Sbjct: 138 GVNTGLIGTIQMR-YGGQSYPMSGTTPEAVELQRYLGNMAEQGVQCCVMEVSSHALEQGR 196
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP------ERHRKVVNIDDP 115
DF A+FTNLT+DH+D+H T EEYR AK LFSR+ + + V+N DDP
Sbjct: 197 VKGTDFRTAIFTNLTQDHLDYHKTMEEYRAAKGLLFSRLGNAFSRDWSDSKYAVLNADDP 256
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
++ F AQ V+T+ +E K++DV + +S T V+T G +I ++G+
Sbjct: 257 ASSYFQAQ--TAAQVITYGVE-KESDVQASRIAISAKGTSFHVSTFKGDTDIELRMVGKF 313
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAA+ + G L DI R +E + V GR E +D Q F VIVDYAHTPD L
Sbjct: 314 NVYNALAAITAALLEGISLADIKRSLESIAGVDGRVEPVDAGQPFAVIVDYAHTPDGLEN 373
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +V+E A +I V GC G+ DR KRPLM KIA SD + +TSDNP EDP IL D
Sbjct: 374 VLRTVKEFAVGKIWCVFGCGGDRDRTKRPLMGKIAARYSDHSFITSDNPRTEDPEVILKD 433
Query: 296 MLAGV---GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ G+ G + Y L + RR A+ A+ M D+V++AG
Sbjct: 434 IEQGLIDEGVAAERY----------------ELIVD--RRAAIHKAIEMASPDDVVLIAG 475
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHETYQ+ G FDDR ++EA++
Sbjct: 476 KGHETYQLIGKTVHEFDDRIVAKEAIR 502
>gi|403386630|ref|ZP_10928687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium sp. JC122]
Length = 481
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 217/375 (57%), Gaps = 36/375 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ YI G+ KL+S RTTP+ + +Q L M+ NG VME SSH L L R
Sbjct: 129 GHKVGLIGTIANYI-GNEKLKSERTTPECLELQELFKNMVDNGVTHCVMEVSSHSLDLYR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLF--SRMVDPERHRKVVNIDDPNATS 119
V F ++FTNLT+DH+DFH T E Y NAK KLF S M ++NIDD
Sbjct: 188 VYGVKFKESIFTNLTQDHLDFHKTFENYFNAKLKLFLASEM-------SIINIDDSYGKQ 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
N ++T++++ +++D+ L + +N + + I+ + G++N+YN
Sbjct: 241 IKDIANN--KIITYSID-EESDLKAYDLNLHSRGIEFKINYNNKVEIINLSIPGKYNVYN 297
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI--DEEQAFGVIVDYAHTPDALSRLL 237
L + + GA +E+I G++ + VPGRCE++ + + + VI+DYAHTPD L ++L
Sbjct: 298 ALGCIVAALNEGATIENIKEGLKSI-MVPGRCEIVTLNHDLGYDVIIDYAHTPDGLEKIL 356
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
SV+E R+I+V GC G+ D KRP+M KI SD+ I+TSDNP EDP I++D+
Sbjct: 357 KSVKEFTTGRLISVFGCGGDRDSVKRPIMGKIGATLSDIAIITSDNPRTEDPFKIIEDVK 416
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
+G+ ++D Y + N RR A++ A+ M ++ D++V+AGKGHE
Sbjct: 417 SGI-----------KSDNYIVIEN---------RRDAIKEAMKMAKKNDIIVIAGKGHED 456
Query: 358 YQIEGDKKEFFDDRE 372
YQ+ +K FD+RE
Sbjct: 457 YQVLKNKTIHFDERE 471
>gi|56964125|ref|YP_175856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus clausii KSM-K16]
gi|56910368|dbj|BAD64895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus clausii KSM-K16]
Length = 485
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 154/379 (40%), Positives = 219/379 (57%), Gaps = 25/379 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD +E+ TTP+++++Q A M++ E VME SSH L LGR
Sbjct: 127 GQKTGLIGTL-YTKIGDETIETRNTTPESLVLQQRFASMVNKQVETAVMEVSSHALHLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP-ERHRKVVNIDDPNATSF 120
D+DIAVFTNLT DH+D+H T E Y AK+ LFS++ + + V+N DDP +
Sbjct: 186 VRGCDYDIAVFTNLTPDHIDYHETMERYLYAKSLLFSQLGNTYDGKTAVINSDDPASDRL 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I DV VT+ ++ K+ADV+ ++S T+ ++ ++ L+G N+YN
Sbjct: 246 IQMTTADV--VTYGIK-KQADVYGENIKVSAAGTRFTLHVFGEKTDVQLKLIGLFNVYNA 302
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA A G L I +E+V V GR E +DE Q F VIVDYAHTPD+L +L +V
Sbjct: 303 LAAAASAYVSGLSLSTIKASLEKVTGVAGRFEPVDEGQDFTVIVDYAHTPDSLENVLQTV 362
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
++ A I VVGC G+ D KRP+M +IA +D TI TSDNP EDP IL D+ G+
Sbjct: 363 QDFADNDIHVVVGCGGDRDATKRPVMGRIAVQYADRTIFTSDNPRTEDPDAILADITEGL 422
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ D Y + + R+ A+ A+A GD+VV+AGKGHETYQ
Sbjct: 423 -----------DPDQYTVIVD---------RKTAIEQAIAAANTGDIVVIAGKGHETYQE 462
Query: 361 EGDKKEFFDDREESREALQ 379
G ++ FDDRE +R+AL+
Sbjct: 463 IGRQRIHFDDREVARDALK 481
>gi|310642992|ref|YP_003947750.1| UDP-N-acetylmuramyl tripeptide synthetase [Paenibacillus polymyxa
SC2]
gi|309247942|gb|ADO57509.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa
SC2]
gi|392303806|emb|CCI70169.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Paenibacillus polymyxa M1]
Length = 495
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 156/384 (40%), Positives = 215/384 (55%), Gaps = 25/384 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ TG++ ++ +G + S TTP+AV +Q + M G + VME SSH L GR
Sbjct: 127 GVNTGLIGTIQMRYNGQSYPMSG-TTPEAVELQRYLGNMAEQGVQCCVMEVSSHALEQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD------PERHRKVVNIDDP 115
DF A+FTNLT+DH+D+H T EEYR AK LFSR+ + V+N DDP
Sbjct: 186 VKGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDASNSKYAVLNADDP 245
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
A+S++ Q V+T+ +E K +DV + +S T V+T G +I ++G+
Sbjct: 246 -ASSYL-QAQTAAQVITYGVE-KDSDVQASRITISAKGTSFHVSTFKGETDIELRMVGKF 302
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAA++ + G L DI R +E + V GR E +D Q F VIVDYAHTPD L
Sbjct: 303 NVYNALAAISAALLEGISLVDIKRSLESIAGVDGRVEPVDAGQPFAVIVDYAHTPDGLEN 362
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +V+E A ++ V GC G+ DR KRPLM KIA SD + +TSDNP EDP+ IL D
Sbjct: 363 VLRTVKEFATGKVWCVFGCGGDRDRTKRPLMGKIAARYSDHSFITSDNPRTEDPIVILKD 422
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
++ G D P R L RR A+ AV M D+V++AGKGH
Sbjct: 423 ------------IEQGLIDEGVP---AERYELIVDRRTAIHKAVEMASPDDVVLIAGKGH 467
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQ+ G FDDR ++EA++
Sbjct: 468 ETYQLIGKTVHEFDDRIVAKEAIR 491
>gi|300854243|ref|YP_003779227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium ljungdahlii DSM 13528]
gi|300434358|gb|ADK14125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium ljungdahlii DSM 13528]
Length = 482
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 212/381 (55%), Gaps = 35/381 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ YI G+ K+ S RTTP+++ +Q L +M+ G + VME SSH L L R
Sbjct: 129 GYKVGLVGTIANYI-GEKKIPSHRTTPESLELQKLFKQMVDEGVQYCVMEVSSHSLYLDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V F A+FTNLTRDH+DFH T E Y AK LF ++ V+NIDD
Sbjct: 188 AYGVRFSEAIFTNLTRDHLDFHKTFENYYKAKLILFKNTINS-----VINIDDKYGDKVY 242
Query: 122 --AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
A G +T+A+ NK+AD+ + + I+ + G++N+ N
Sbjct: 243 EDALGTK----ITYAI-NKEADLKANDLNIHSRGANFNITYRGQTAHINLNIPGKYNVMN 297
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYAHTPDALSRLL 237
L ++ + G LE + +G+E ++AVPGRCE++ + G VIVDYAHTPD L +L
Sbjct: 298 ALGSIGACLCEGISLEVVKKGLESMNAVPGRCEIVTKGYNLGYEVIVDYAHTPDGLENIL 357
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ RE R+I V GC G+ D KRP+M KI T+ SD ++TSDNP E+P I+D+++
Sbjct: 358 KTAREFTTGRLIAVFGCGGDRDNTKRPIMGKIGTELSDFAVITSDNPRGEEPRAIIDEIV 417
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV E D Y + N R+ A++ A+ M ++GD++VVAGKGHE
Sbjct: 418 NGV-----------EKDDYKVVEN---------RKEAIKEAIHMAQKGDVIVVAGKGHED 457
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI DK FD+RE E L
Sbjct: 458 YQILKDKTIHFDEREIIAEIL 478
>gi|422343142|ref|ZP_16424070.1| hypothetical protein HMPREF9432_00130 [Selenomonas noxia F0398]
gi|355378449|gb|EHG25629.1| hypothetical protein HMPREF9432_00130 [Selenomonas noxia F0398]
Length = 495
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 153/382 (40%), Positives = 213/382 (55%), Gaps = 24/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ + D+ + TTPD +++Q L+A+M G +AVVME SSH L GR
Sbjct: 131 GRRVGLIGTIQIMME-DDVFSTANTTPDVIVMQQLLAEMRTRGMDAVVMEVSSHALDQGR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD---PERHRKVVNIDDPNAT 118
+ ++FD AVFTNLT+DH+D+H T E Y AKA+LF + + E ++N DD A
Sbjct: 190 VAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFDLVSEQGVKEGKTAILNADDAAAK 249
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL-EISSGLLGRHNI 177
+ A + P++T+ + + AD+ K L ++ + L + +G+ G N+
Sbjct: 250 TMRAHTH--CPLITYGV-DMPADLTARKIRLGQDGMELTIAYAGAELPAVQTGITGLFNV 306
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA +A P DI + VPGR EL+ Q F VIVDYAHTPD + +L
Sbjct: 307 YNVLAAAGAALAEQVPASDITAALAAFSGVPGRFELVRAGQDFSVIVDYAHTPDGMENVL 366
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ R + RIITV GC G+ DR KRP+M +IA + DV +LTSDNP EDP ILD++
Sbjct: 367 RTARAVTTGRIITVFGCGGDRDRTKRPIMGRIAAELGDVIVLTSDNPRTEDPAAILDEVE 426
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV P + L D RR A+ AV M GD VV+ GKGHET
Sbjct: 427 AGV---------------LPAIGGKPYEKLVD-RRTAIFHAVQMARAGDTVVILGKGHET 470
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI D FDDRE + EA++
Sbjct: 471 YQILKDGTIHFDDRETAAEAIR 492
>gi|251779601|ref|ZP_04822521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243083916|gb|EES49806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 484
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/390 (36%), Positives = 217/390 (55%), Gaps = 51/390 (13%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ YI G+ KL + RTTP+++ +Q L M++ G E VME SSH L L R
Sbjct: 130 GKKVGLIGTIANYI-GNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVSSHSLELDR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
VDF++ +FTNLTRDH+DFH T E Y N+K KLF R + +++N DD I
Sbjct: 189 VYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFKR-----SNIRIINNDDNYGKQVI 243
Query: 122 AQGNP-------DVPV---VTFAMENKKADVHPLKFELSL-FETQVLVNTPHGILEISSG 170
N + + F ++K + F+++L E + +++ P
Sbjct: 244 KDLNKLKAKNIYEYSIKEDSNFKAFDEKMGSKNISFKVNLEKEEEFILSIP--------- 294
Query: 171 LLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE--LIDEEQAFGVIVDYAH 228
G +NIYN L A+ + P+E I GI +V VPGRCE + + +I+DYAH
Sbjct: 295 --GEYNIYNALGAIGACYKLNIPMEAIKNGINKV-IVPGRCERTATNYNLPYDIIIDYAH 351
Query: 229 TPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
TPD L +L++ R R+I + GC G+ D+ KRP M KI TD +D+ I+TSDNP +E+
Sbjct: 352 TPDGLKNILETARGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIVTSDNPRSEE 411
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P+ I+DD+L G+ E D Y + N R+ A++ A+ + +E D++
Sbjct: 412 PMRIIDDILVGI-----------EKDNYEVIEN---------RKDAIKKAMDIAKENDVI 451
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREAL 378
V+AGKGHETYQI DK FD+RE ++ L
Sbjct: 452 VIAGKGHETYQILKDKTIHFDEREVVKQIL 481
>gi|290969167|ref|ZP_06560692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Megasphaera genomosp. type_1 str. 28L]
gi|290780673|gb|EFD93276.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Megasphaera genomosp. type_1 str. 28L]
Length = 499
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 215/381 (56%), Gaps = 22/381 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G+L ++ + + D +L TTPD V +Q +A+M G VVME SSH LAL R
Sbjct: 131 GYHVGVLGTI-HALMDDLELPIHNTTPDVVELQRFLAQMYARGITHVVMEVSSHALALQR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV--DPERHRK--VVNIDDPNA 117
+ +++D AVFTNLT+DH+DFH T E Y AKAKLF + P + K V+N DDP +
Sbjct: 190 VAGIEYDTAVFTNLTQDHLDFHKTMENYAAAKAKLFRGLTAGTPVKKGKTAVLNRDDPWS 249
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + V+T+ E ++A + +++L + V P G + + + G N+
Sbjct: 250 V-LMRKACGTAEVLTYGTE-REASLRGTHLQVALKHSAFDVTGPFGDMHLQMNITGLFNV 307
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ A G E I + ++ AVPGR EL++ Q F ++VDY+HTPD+L + L
Sbjct: 308 YNTLAAIGAAYAEGVDPETIGKAMQTFHAVPGRFELVEAGQDFAIVVDYSHTPDSLEKAL 367
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ R + P +II V GC G+ DR KRP+M +IA +D+ ++TSDNP +E+P I+ ++
Sbjct: 368 TTARAMNPHKIIVVFGCGGDRDRTKRPIMGRIAATHADIPVVTSDNPRSENPEAIVAEVA 427
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV +Q P L D RR R GDMV++AGKGHET
Sbjct: 428 AGVKEALQ--------------PGQQYEVLTDRRRAIRRAVALA-NTGDMVLIAGKGHET 472
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI DK FDDREE+R A+
Sbjct: 473 YQILKDKTIHFDDREEARNAV 493
>gi|407473755|ref|YP_006788155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Clostridium acidurici 9a]
gi|407050263|gb|AFS78308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Clostridium acidurici 9a]
Length = 489
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 213/376 (56%), Gaps = 25/376 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I+G ++ TTP+++ +Q + M+ + + +ME SSH L L R S
Sbjct: 131 KTGIVGTIGNIING-KLFKTNNTTPESLELQKTFSNMVESKVDNCIMEVSSHALDLNRVS 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
DF+ +FTNL+ DH+D+H T E Y +AK KLF + ++N DD I +
Sbjct: 190 YCDFETGIFTNLSVDHLDYHKTLENYLDAKIKLFYMT----KKYNIINADDEYGKRIIEK 245
Query: 124 -GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILA 182
N D P++T+ +ENK D++ L + +NTP G ++I + G ++YN L
Sbjct: 246 IKNIDTPLLTYGIENK-CDIYATDIVYHLNGVEFRLNTPKGSIDIKMNIPGEFSVYNALT 304
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRE 242
A + G A LEDI G+E V V GR E++D ++ F VI+D+AHTPDAL + L S++E
Sbjct: 305 AASCGYAYDLSLEDIKVGLESVKGVKGRFEVVDTDRDFVVIIDFAHTPDALEKALKSIKE 364
Query: 243 LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGW 302
A RR++ + G G+ D KR M +IA +D +I+TSDNP +EDP I++D+L G
Sbjct: 365 FAKRRLVVLFGAGGDRDNSKRATMGEIAGKYADFSIVTSDNPRSEDPTKIIEDILIGTKK 424
Query: 303 TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEG 362
+ + Y+ + R+ A++ A+ + D++++AGKGHETY I G
Sbjct: 425 STENYIAITD------------------RKEAIKYAIENSKTNDIILLAGKGHETYTIIG 466
Query: 363 DKKEFFDDREESREAL 378
+K FD+RE +E L
Sbjct: 467 EKTLPFDEREIVKEIL 482
>gi|325288825|ref|YP_004265006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Syntrophobotulus glycolicus DSM 8271]
gi|324964226|gb|ADY55005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Syntrophobotulus glycolicus DSM 8271]
Length = 494
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 211/389 (54%), Gaps = 45/389 (11%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ I G+ + TTP++ +Q+L+ +M+ G VME SSH L LGR
Sbjct: 134 GKKTGLIGTLGSRI-GNRGIPGQHTTPESAEIQDLLNQMVEEGVNTAVMEVSSHALDLGR 192
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
FD A+FTNLT+DH+D+H + EEY AK LF++M + +K + D A+ ++
Sbjct: 193 IVGCRFDTAIFTNLTQDHLDYHQSMEEYLAAKGLLFAQMSGEKPGQKAILNADDQASEYL 252
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELS-----------LFETQVLVNTPHGILEISSG 170
VVT+ +E KKAD K LS +V TP
Sbjct: 253 MT-KTSCRVVTYGIE-KKADYQAEKIVLSDKGIYFDLVYKKIREKVFFATP--------- 301
Query: 171 LLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTP 230
G+ ++YN+LAA A + G E + + + + VPGR + I + Q F VI+DYAHTP
Sbjct: 302 --GKFSVYNVLAAYAWALDNGYESEKVQKALCNLQGVPGRFQSIRKGQPFLVIIDYAHTP 359
Query: 231 DALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPL 290
D L +L + RE+ RR+ITV GC G+ DRGKRPLM + A+ SD I+TSDNP EDP
Sbjct: 360 DGLENVLSTAREITGRRLITVFGCGGDRDRGKRPLMAEAASGWSDYVIVTSDNPRTEDPE 419
Query: 291 DILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVV 350
I+ D+L G+ G+ DY + RR A+ A M EGD V++
Sbjct: 420 KIIGDILPGM----------GKVDYEVIVD----------RRRAIHRACTMAGEGDTVLI 459
Query: 351 AGKGHETYQIEGDKKEFFDDREESREALQ 379
AGKGHE YQI G K FDD+EE+ AL+
Sbjct: 460 AGKGHEDYQIIGTSKIHFDDKEEASAALR 488
>gi|153939113|ref|YP_001390805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum F str. Langeland]
gi|384461858|ref|YP_005674453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Clostridium botulinum F str. 230613]
gi|152935009|gb|ABS40507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum F str. Langeland]
gi|295318875|gb|ADF99252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Clostridium botulinum F str. 230613]
Length = 483
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 150/392 (38%), Positives = 219/392 (55%), Gaps = 55/392 (14%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+L +++ YI G+ K+ES RTTP+++ +Q L M+ + VME SSH L L R
Sbjct: 131 GYKVGLLGTIANYI-GNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V+F A+FTNLT+DH+DFH T E Y N+K LF V+NIDD +
Sbjct: 190 VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA-----QNSVINIDDSYGEKVL 244
Query: 122 --AQGNPDVPVVTFAMENK---KAD---VHPLKFEL-SLFETQ---VLVNTPHGILEISS 169
A GN +T+ +E KA+ +H E ++F+ + + +N P
Sbjct: 245 KKALGNK----ITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP-------- 292
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYA 227
G++NIYN L ++ + G PL+ I +E++ +VPGRCE++ + G VIVDYA
Sbjct: 293 ---GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYA 349
Query: 228 HTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNE 287
HTPD L +L++ RE R+I+V GC G+ DR KRP+M K+ ++ SD+ I+TSDNP E
Sbjct: 350 HTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTE 409
Query: 288 DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347
DP I+ D+L G+ E D Y + RR A+R A+ + +E D+
Sbjct: 410 DPKLIIKDVLEGI-----------ERDNYIVVEG---------RRDAIRKAMEIAKENDV 449
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+VVAGKGHE YQI DK FD+RE E ++
Sbjct: 450 IVVAGKGHEDYQILKDKTIHFDEREVIEELIK 481
>gi|333978590|ref|YP_004516535.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822071|gb|AEG14734.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 492
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 154/384 (40%), Positives = 218/384 (56%), Gaps = 26/384 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ +I GD L TTP+++ +Q L+A+M+++G VME SSH LAL R
Sbjct: 129 GNKVGLIGTIANWI-GDRVLPVSHTTPESLDLQKLLAEMVNDGVAVAVMEVSSHALALNR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-VDPERHRKVVNIDDPNATSF 120
+ FD VFTN+T+DH+DFH E+Y AK LF + D + V+N+DDP A
Sbjct: 188 VAGCAFDAGVFTNITQDHLDFHRDMEDYLAAKTLLFRGLGQDGKPGLAVINVDDPRAERI 247
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
A VPV T+ + + +A V + +++ V G ++ L G N+YN
Sbjct: 248 AAATK--VPVYTYGL-SAEAQVRAQEVKVTPRGASFTVTGSWGECPVNLKLTGYFNVYNA 304
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA+ +A G PL VR +E V+ VPGR EL+D Q F V+VDYAHTPD L +L +
Sbjct: 305 LAALTAAVAGGVPLPLAVRALESVEGVPGRFELVDRGQDFAVVVDYAHTPDGLENILTTA 364
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R + R+ITV GC G+ D KRPLM +IA SD+ ++TSDNP EDP+ I+ + GV
Sbjct: 365 RAITRGRLITVFGCGGDRDPTKRPLMGEIAARLSDLPVITSDNPRTEDPMRIIAQVEEGV 424
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+Y +P+ RR A+R A+ + GD V++AGKGHE YQI
Sbjct: 425 RRVRSDYRV---------VPD---------RRKAIRFALGVAAPGDTVIIAGKGHENYQI 466
Query: 361 EGDKKEFFDDREESREALQYVDEL 384
G K FDDR E+ +AL DEL
Sbjct: 467 IGTTKYPFDDRNEAIKAL---DEL 487
>gi|392957430|ref|ZP_10322953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus macauensis ZFHKF-1]
gi|391876393|gb|EIT84990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus macauensis ZFHKF-1]
Length = 489
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/379 (38%), Positives = 212/379 (55%), Gaps = 28/379 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ GM+ ++ I+G + + TTP+++ +Q +M G EA VME SSH L +GR
Sbjct: 131 KVGMIGTIGVMINGVHH-KVNNTTPESLFLQKAFHEMTEEGVEAAVMEVSSHALDMGRVR 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATS 119
D+D+AVFTNLT+DH+D+HG Y AK LFS++ + K V+N DD +
Sbjct: 190 GCDYDVAVFTNLTQDHLDYHGDMMTYMRAKGLLFSQLGNTYGSAKPKVAVLNGDDSASEH 249
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
F ++T+ ++ DV +++ T + TP E+S L+G+ ++YN
Sbjct: 250 FAKM--TAAQIITYGIDTD-CDVTAKNIKITGRGTTFTLVTPFEEREVSLKLVGKFSVYN 306
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA++ + G ++ ++ +E V V GR E +D Q F VIVDYAHTPD+L L +
Sbjct: 307 VLAAISASLVSGIGIDSVIETMESVKGVDGRFETVDAGQEFTVIVDYAHTPDSLENALLT 366
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
V+E A II + GC G+ DR KRPLM +IA++ SDV I TSDNP EDP ILD+M AG
Sbjct: 367 VKEFAEGNIICIAGCGGDRDRTKRPLMAQIASEHSDVAIFTSDNPRTEDPQAILDEMKAG 426
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
ND +P+ RR A+ AV+ D++++AGKGHETYQ
Sbjct: 427 TA-----------NDNVVVIPD---------RREAIEYAVSQATPLDIILIAGKGHETYQ 466
Query: 360 IEGDKKEFFDDREESREAL 378
I G FDDR E+ +A+
Sbjct: 467 IIGKDVFDFDDRVEAAKAI 485
>gi|89895658|ref|YP_519145.1| hypothetical protein DSY2912 [Desulfitobacterium hafniense Y51]
gi|89335106|dbj|BAE84701.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 496
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 149/379 (39%), Positives = 204/379 (53%), Gaps = 24/379 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I G +L RTTP+A+ +Q L+ +M+ G + VME SSH L GR
Sbjct: 135 GKKVGLIGTLGARIAG-RELPGNRTTPEAIDLQKLLKEMVDEGVQLAVMEVSSHALVFGR 193
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD-PERHRKVVNIDDPNATSF 120
+ +FD +F+NLT+DH+D+H T EEY AKA+LFS + E VVN DDP A +
Sbjct: 194 VTGCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVVNGDDPAAETL 253
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I PVVT+ + D L+ + V G ++ G ++YN
Sbjct: 254 IRLSA--APVVTYGVNADLLDYRAEDILLTADGVKFTVRFKGGESQVEYSTPGMFSVYNA 311
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA A G+ G + + V VPGR E + Q F +IVDYAHTPD L + +
Sbjct: 312 LAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRMGQPFQIIVDYAHTPDGLENVCRTA 371
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
+E R+ITV GC G+ D+GKRP M IA + SD I+TSDNP EDP I+ D+L G+
Sbjct: 372 QEFTQGRLITVFGCGGDRDKGKRPQMGAIAEELSDHVIVTSDNPRTEDPRQIIRDILEGI 431
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
E + Y N RR A+ CA + +EGD V++AGKGHE YQI
Sbjct: 432 -----EGIDYTANVN---------------RREAIECACLLAKEGDTVLIAGKGHEDYQI 471
Query: 361 EGDKKEFFDDREESREALQ 379
G FDDRE +REAL+
Sbjct: 472 IGKDVFPFDDREVAREALR 490
>gi|387817732|ref|YP_005678077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum H04402 065]
gi|322805774|emb|CBZ03339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum H04402 065]
Length = 483
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 149/392 (38%), Positives = 219/392 (55%), Gaps = 55/392 (14%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+L +++ YI G+ K+ES RTTP+++ +Q L M+ + VME SSH L L R
Sbjct: 131 GYKVGLLGTIANYI-GNKKIESHRTTPESIELQKLFKDMVDEKVDYCVMEVSSHSLYLDR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V+F ++FTNLT+DH+DFH T E Y N+K LF V+NIDD +
Sbjct: 190 VYGVEFKESIFTNLTQDHLDFHKTFENYFNSKLILFKNA-----QNSVINIDDSYGEKVL 244
Query: 122 --AQGNPDVPVVTFAMENK---KAD---VHPLKFEL-SLFETQ---VLVNTPHGILEISS 169
A GN +T+ +E KA+ +H E ++F+ + + +N P
Sbjct: 245 KKALGNK----ITYGLEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP-------- 292
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYA 227
G++NIYN L ++ + G PL+ I +E++ +VPGRCE++ + G VIVDYA
Sbjct: 293 ---GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYA 349
Query: 228 HTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNE 287
HTPD L +L++ RE R+I+V GC G+ DR KRP+M K+ ++ SD+ I+TSDNP E
Sbjct: 350 HTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTE 409
Query: 288 DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347
DP I+ D+L G+ E D Y + RR A+R A+ + +E D+
Sbjct: 410 DPKLIIKDVLEGI-----------ERDNYIVVEG---------RRDAIRKAMEIAKENDV 449
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+VVAGKGHE YQI DK FD+RE E ++
Sbjct: 450 IVVAGKGHEDYQILKDKTIHFDEREVIEELIK 481
>gi|335049500|ref|ZP_08542490.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Megasphaera sp. UPII 199-6]
gi|333762760|gb|EGL40245.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Megasphaera sp. UPII 199-6]
Length = 499
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 215/381 (56%), Gaps = 22/381 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G+L ++ + + D +L TTPD V +Q +A+M G VVME SSH LAL R
Sbjct: 131 GYHVGVLGTI-HALMDDLELPIHNTTPDVVELQRFLAQMYARGITHVVMEVSSHALALQR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV--DPERHRK--VVNIDDPNA 117
+ +++D AVFTNLT+DH+DFH T E Y AKAKLF + P + K V+N DDP +
Sbjct: 190 VAGIEYDTAVFTNLTQDHLDFHKTMENYAAAKAKLFRGLTAGTPVKKGKTAVLNRDDPWS 249
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + V+T+ E ++A + +++L + V P G + + + G N+
Sbjct: 250 V-LMRKACGTAEVLTYGTE-REASLRGTHLQVALKHSVFDVTGPFGDMHLQMNITGLFNV 307
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ A G E I + ++ AVPGR EL++ Q F ++VDY+HTPD+L + L
Sbjct: 308 YNTLAAIGAAYAEGVDPETIGKAMQTFHAVPGRFELVEAGQDFAIVVDYSHTPDSLEKAL 367
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ R + P +II V GC G+ DR KRP+M +IA +D+ ++TSDNP +E+P I+ ++
Sbjct: 368 TTARAMNPHKIIVVFGCGGDRDRTKRPIMGRIAATHADIPVVTSDNPRSENPEAIVAEVA 427
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV +Q P L D RR R GDMV++AGKGHET
Sbjct: 428 AGVKEALQ--------------PGQQYEVLTDRRRAIRRAVALA-NTGDMVLIAGKGHET 472
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI DK FDDREE+R A+
Sbjct: 473 YQILKDKTIHFDDREEARNAV 493
>gi|148379429|ref|YP_001253970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A str. ATCC 3502]
gi|153931323|ref|YP_001383808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A str. ATCC 19397]
gi|153936377|ref|YP_001387358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A str. Hall]
gi|226948793|ref|YP_002803884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A2 str. Kyoto]
gi|166224774|sp|A7FTY1.1|MURE_CLOB1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|166224775|sp|A5I1T6.1|MURE_CLOBH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|148288913|emb|CAL83000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A str. ATCC 3502]
gi|152927367|gb|ABS32867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A str. ATCC 19397]
gi|152932291|gb|ABS37790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A str. Hall]
gi|226844175|gb|ACO86841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A2 str. Kyoto]
Length = 483
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 150/392 (38%), Positives = 219/392 (55%), Gaps = 55/392 (14%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+L +++ YI G+ K+ES RTTP+++ +Q L M+ + VME SSH L L R
Sbjct: 131 GYKVGLLGTIANYI-GNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V+F A+FTNLT+DH+DFH T E Y N+K LF V+NIDD +
Sbjct: 190 VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA-----QNSVINIDDSYGEKVL 244
Query: 122 --AQGNPDVPVVTFAMENK---KAD---VHPLKFEL-SLFETQ---VLVNTPHGILEISS 169
A GN +T+ +E KA+ +H E ++F+ + + +N P
Sbjct: 245 KKALGNK----ITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP-------- 292
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYA 227
G++NIYN L ++ + G PL+ I +E++ +VPGRCE++ + G VIVDYA
Sbjct: 293 ---GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYA 349
Query: 228 HTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNE 287
HTPD L +L++ RE R+I+V GC G+ DR KRP+M K+ ++ SD+ I+TSDNP E
Sbjct: 350 HTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTE 409
Query: 288 DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347
DP I+ D+L G+ E D Y + RR A+R A+ + +E D+
Sbjct: 410 DPKLIIKDVLEGI-----------ERDNYIVVEG---------RRDAIRKAMEIAKENDV 449
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+VVAGKGHE YQI DK FD+RE E ++
Sbjct: 450 IVVAGKGHEDYQILKDKTIHFDEREVIEELIK 481
>gi|168180115|ref|ZP_02614779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum NCTC 2916]
gi|168182386|ref|ZP_02617050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum Bf]
gi|237794795|ref|YP_002862347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum Ba4 str. 657]
gi|182669114|gb|EDT81090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum NCTC 2916]
gi|182674468|gb|EDT86429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum Bf]
gi|229260624|gb|ACQ51657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum Ba4 str. 657]
Length = 483
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 150/392 (38%), Positives = 219/392 (55%), Gaps = 55/392 (14%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+L +++ YI G+ K+ES RTTP+++ +Q L M+ + VME SSH L L R
Sbjct: 131 GYKVGLLGTIANYI-GNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V+F A+FTNLT+DH+DFH T E Y N+K LF V+NIDD +
Sbjct: 190 VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA-----QNSVINIDDSYGEKVL 244
Query: 122 --AQGNPDVPVVTFAMENK---KAD---VHPLKFEL-SLFETQ---VLVNTPHGILEISS 169
A GN +T+ +E KA+ +H E ++F+ + + +N P
Sbjct: 245 KKALGNK----ITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP-------- 292
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYA 227
G++NIYN L ++ + G PL+ I +E++ +VPGRCE++ + G VIVDYA
Sbjct: 293 ---GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYA 349
Query: 228 HTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNE 287
HTPD L +L++ RE R+I+V GC G+ DR KRP+M K+ ++ SD+ I+TSDNP E
Sbjct: 350 HTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTE 409
Query: 288 DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347
DP I+ D+L G+ E D Y + RR A+R A+ + +E D+
Sbjct: 410 DPKLIIKDVLEGI-----------ERDNYIVVEG---------RRDAIRKAMEIAKENDV 449
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+VVAGKGHE YQI DK FD+RE E ++
Sbjct: 450 IVVAGKGHEDYQILKDKTIHFDEREVIEELIK 481
>gi|429735412|ref|ZP_19269377.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Selenomonas sp. oral taxon 138
str. F0429]
gi|429158920|gb|EKY01446.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Selenomonas sp. oral taxon 138
str. F0429]
Length = 494
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 150/384 (39%), Positives = 209/384 (54%), Gaps = 30/384 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ + D + TTPD +++Q L+A+M + VVME SSH L GR
Sbjct: 131 GKRVGLIGTIQIMME-DEVFPTANTTPDVIVMQQLLAEMRARSMDTVVMEVSSHALDQGR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLF---SRMVDPERHRKVVNIDDPNAT 118
+ ++FD AVFTNLT+DH+D+H T E Y AKA+LF S V+N DD A
Sbjct: 190 VAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFDLVSEAGTKAGKTAVLNADD--AA 247
Query: 119 SFIAQGNPDVPVVTFAMENKK----ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGR 174
S + + PV+++ +E+K DVH + + L LV+ +++ GL G
Sbjct: 248 SATMRAHTRCPVISYGVESKADLAARDVHLAQDGMEL----TLVHGEAEPVKLHIGLTGL 303
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+YN+LAA +A P+ DI + VPGR EL+ Q F VIVDYAHTPD +
Sbjct: 304 FNVYNVLAATGAALAEKMPVADIAAALCAFTGVPGRFELVRAGQDFSVIVDYAHTPDGME 363
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L + R + RII V GC G+ DR KRP+M +I + +D+ +LTSDNP EDP ILD
Sbjct: 364 NVLRTARAVTAGRIIAVFGCGGDRDRTKRPIMGRIGAELADIVVLTSDNPRTEDPAAILD 423
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
++ GV L Y L + RR A+ A+ + GD VV+ GKG
Sbjct: 424 EVETGV-------LPVIGAKPYEKLVD---------RRTAIFHAIGRAKAGDTVVILGKG 467
Query: 355 HETYQIEGDKKEFFDDREESREAL 378
HE YQI D FDDRE +REA+
Sbjct: 468 HENYQILKDGTIHFDDRETAREAI 491
>gi|119486520|ref|ZP_01620578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lyngbya sp. PCC 8106]
gi|119456422|gb|EAW37553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lyngbya sp. PCC 8106]
Length = 508
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 148/364 (40%), Positives = 212/364 (58%), Gaps = 28/364 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
+++ + TTP AV +Q +A+ + G + VME SSH L GR E FD+AVFTNLT+D
Sbjct: 157 SQITAAYTTPFAVELQQKLAEAVKAGCQYGVMEVSSHALHQGRVLECPFDVAVFTNLTQD 216
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPE--RHRKVVNIDDPNATSFIAQGNPDVPVVTFAME 136
H+D+H T E+Y AKA LFS P+ + R ++N DD I + D V ++++
Sbjct: 217 HLDYHQTMEDYFEAKALLFS----PQYLQGRAIINADDSYGKRLIERLEADR-VWSYSIN 271
Query: 137 NKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLED 196
+ AD+ + + +++TP G L+G++N+ N+LAA+ G+++G L
Sbjct: 272 DSTADLWAAQLSYEPNGVKGVLHTPQGEAAFELPLVGQYNLSNLLAAIGAGLSLGLDLAT 331
Query: 197 IVRGIEEVDAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
++ + E VPGR E I +Q VIVDYAHTPD+L LL + R P R+I V GC
Sbjct: 332 MMAKLPEFLGVPGRMERVQISSQQDVSVIVDYAHTPDSLENLLKASRPFIPGRMICVFGC 391
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DR KRP M KIA D +DV ++TSDNP EDP IL+D+LAG+ ++
Sbjct: 392 GGDRDRTKRPKMGKIAADLADVVVVTSDNPRTEDPNRILEDILAGIDLEIK--------- 442
Query: 315 YYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREES 374
P+ R H I+R A+A + GD V++AGKGHE YQI G +K FDDRE++
Sbjct: 443 ---PIVMCDR--AHAIQR-----AIAEAKPGDGVLIAGKGHEDYQILGTEKVHFDDREQA 492
Query: 375 REAL 378
REAL
Sbjct: 493 REAL 496
>gi|218245162|ref|YP_002370533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cyanothece sp. PCC 8801]
gi|218165640|gb|ACK64377.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8801]
Length = 501
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 203/355 (57%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A+ + G VME SSH LA GR F++AVF+NLT+DH+D+H
Sbjct: 160 TTPFAVQLQEQLAQAVDAGNHYCVMEVSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRD 219
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y +AK+ LFS D R ++N+DD I QG V ++++ + AD +
Sbjct: 220 MEDYFSAKSLLFSP--DYLAKRAIINLDDAYGQRLI-QGLDKGQVWSYSVSDPSADFYTS 276
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
++TP G + +S L+G+ N+ N+LAAVA + +G L I+ + +
Sbjct: 277 DLTYQATGVGGTLHTPQGTIPFTSPLVGQFNLSNLLAAVATVVHLGLDLNQIINQLPQFM 336
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I ++Q VIVDYAHTPD+L LL + R P ++I V GC G+ DR KR
Sbjct: 337 GVPGRMERVQISDQQEISVIVDYAHTPDSLENLLKAARPFIPGQMICVFGCGGDRDRTKR 396
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM +I+ +DV+++TSDNP EDP IL+D+LAG+ P G
Sbjct: 397 PLMGQISAKLADVSVVTSDNPRTEDPQQILEDILAGI-------------------PEGV 437
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ R +A+ A+ + GD V++AGKGHE YQI G +K FDDRE++++AL
Sbjct: 438 NPMVISDRALAIDQAIQQAQPGDGVLIAGKGHEDYQILGTEKIHFDDREQAKKAL 492
>gi|374324852|ref|YP_005077981.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus terrae HPL-003]
gi|357203861|gb|AET61758.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus terrae HPL-003]
Length = 495
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 152/384 (39%), Positives = 210/384 (54%), Gaps = 25/384 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ TG++ ++ +G TTP+AV +Q + M+ G + ME SSH L GR
Sbjct: 127 GVNTGLIGTIQMR-YGGRSYPMSGTTPEAVELQRYLGNMVEQGVQCCAMEVSSHALEQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP------ERHRKVVNIDDP 115
DF A+FTNLT+DH+D+H T EEYR AK LFSR+ + + V+N DDP
Sbjct: 186 VKGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNSFSRDASDSKYAVLNADDP 245
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
++ F Q V+T+ +E KK+DV + T V+T G +I ++G+
Sbjct: 246 ASSYF--QAITAAQVITYGVE-KKSDVQASHIAVGAKGTSFQVSTFKGDTDIELRMVGKF 302
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAA+ + G PL DI +E + V GR E +D Q F VIVDYAHTPD L
Sbjct: 303 NVYNALAAITAALLEGVPLADIKHSLESIAGVDGRVEPVDAGQPFAVIVDYAHTPDGLEN 362
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +V+E A ++ V GC G+ DR KRPLM KIA SD +TSDNP EDP IL D
Sbjct: 363 VLRTVKEFAIGKVWCVFGCGGDRDRTKRPLMGKIAAQYSDHAFITSDNPRTEDPEAILKD 422
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ G+ + G +P + D RR A+ AV M D+V++AGKGH
Sbjct: 423 IEQGL-------IDEG-------IPAERYELIID-RRAAIHKAVEMASPDDVVLIAGKGH 467
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQ+ G FDDR ++EA++
Sbjct: 468 ETYQLIGKTVHEFDDRIVAKEAIR 491
>gi|114566358|ref|YP_753512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|122318561|sp|Q0AYR3.1|MURE_SYNWW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|114337293|gb|ABI68141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 489
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 140/378 (37%), Positives = 217/378 (57%), Gaps = 21/378 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +T ++ ++ Y G+ + E TTP+A+ +++ MA + +VME SSH L L R
Sbjct: 129 GKKTAIMGTL-YAQVGEIQREMQHTTPEALEIESFMALCREEKADYIVMEVSSHALQLQR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+E+DF++AVFTNLT+DH+DFH + YR AK +LF + + +++ ++NIDDP A
Sbjct: 188 VAEIDFNVAVFTNLTQDHLDFHQNMDNYRAAKLQLFQMIKEEKQNYAIINIDDPWAEEIF 247
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+P ++ ++ K++D + ++ L + ++ L I+ L+G +IYN L
Sbjct: 248 QAAT--IPCRSYGIK-KRSDYQAGELKIDLDGSSFRLHYGDNSLMINMKLIGLFSIYNAL 304
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA++ + G I + V+ VPGR E +D Q F VIVDYAHTPD L +L + R
Sbjct: 305 AAISFALQEGIDPGLIQSALARVEGVPGRFEKVDCGQDFAVIVDYAHTPDGLENILQTSR 364
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
EL +R+I V GC G+ DR KRPLM +IA SD ++TSDNP +EDP I+ +++ G+
Sbjct: 365 ELGKKRLICVFGCGGDRDRSKRPLMGEIAAKYSDFCVVTSDNPRSEDPHAIIAEIIPGMD 424
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
E Y + + RR A+R A+ + GD+VV+AGKGHE YQ+
Sbjct: 425 KV--------EKSRYAIIVD---------RREAIRHAIHLARTGDLVVIAGKGHENYQLV 467
Query: 362 GDKKEFFDDREESREALQ 379
D+ FDDR+ + E L+
Sbjct: 468 KDQVLEFDDRKVAAELLR 485
>gi|257058188|ref|YP_003136076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cyanothece sp. PCC 8802]
gi|256588354|gb|ACU99240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8802]
Length = 501
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 139/355 (39%), Positives = 203/355 (57%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A+ + G VME SSH LA GR F++AVF+NLT+DH+D+H
Sbjct: 160 TTPFAVQLQEQLAQAVDAGNHYCVMEVSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRD 219
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y +AK+ LFS D R ++N+DD I QG V ++++ + AD +
Sbjct: 220 MEDYFSAKSLLFSP--DYLAKRAIINLDDAYGQRLI-QGLDKGQVWSYSVSDPSADFYTS 276
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
++TP G + +S L+G+ N+ N+LAAVA + +G L ++ + +
Sbjct: 277 DLTYQATGVGGTLHTPQGTIPFTSPLVGQFNLSNLLAAVATVVHLGLDLNQVINQLPQFM 336
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I ++Q VIVDYAHTPD+L LL + R P ++I V GC G+ DR KR
Sbjct: 337 GVPGRMERVQISDQQEISVIVDYAHTPDSLENLLKAARPFIPGQMICVFGCGGDRDRTKR 396
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM +I+ +DV+++TSDNP EDP IL+D+LAG+ P G
Sbjct: 397 PLMGQISAKLADVSVVTSDNPRTEDPQQILEDILAGI-------------------PEGV 437
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ R +A+ A+ + GD V++AGKGHE YQI G +K FDDRE++++AL
Sbjct: 438 NPMVISDRALAIHQAIQQAQPGDGVLIAGKGHEDYQILGTEKIHFDDREQAKKAL 492
>gi|15615134|ref|NP_243437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus halodurans C-125]
gi|20139211|sp|Q9K9S4.1|MURE_BACHD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|10175191|dbj|BAB06290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus halodurans C-125]
Length = 486
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 154/392 (39%), Positives = 226/392 (57%), Gaps = 51/392 (13%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ Y G E+ TTP+++++Q A M +G +ME SSH L GR
Sbjct: 128 GKMTGLIGTM-YTKIGHELKETKNTTPESLVLQRTFADMKKSGVTTAMMEVSSHALQSGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
DFD+AVF+NLT DH+D+HGT E Y+ AK LF+++ + + + V+N DDP + F
Sbjct: 187 VRGCDFDVAVFSNLTPDHLDYHGTMERYKFAKGLLFAQLGNTYQGKVAVLNADDPASADF 246
Query: 121 ----IAQGNPDVPVVTFAMENKKADVHP---------LKFELSLFETQVLVNTPHGILEI 167
IAQ VVT+ +EN+ AD FEL+ FE + +E+
Sbjct: 247 AEMTIAQ------VVTYGIENE-ADFQAENVRITSTGTTFELAAFEER---------MEL 290
Query: 168 SSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYA 227
S L+G+ ++YN+LAA A G PL++I + +EEV V GR E + +Q F VIVDYA
Sbjct: 291 SIHLIGKFSVYNVLAAAAAAYVSGVPLQEIKKSLEEVKGVAGRFETVKHDQPFTVIVDYA 350
Query: 228 HTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNE 287
HTPD+L +L +V ELA + VVGC G+ D+ KRP+M +IAT ++ I TSDNP +E
Sbjct: 351 HTPDSLENVLKTVGELAKGDVRVVVGCGGDRDKTKRPVMAEIATTFANQAIFTSDNPRSE 410
Query: 288 DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347
+P+DIL DM G + D Y L + D R+ A+ A+ + +E D+
Sbjct: 411 EPMDILRDMEQG-----------AKGDSY--------LMIED-RKEAIFKAIELAKEDDI 450
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+V+AGKGHETYQ D+ FDDR +++A++
Sbjct: 451 IVIAGKGHETYQQFRDRTIDFDDRIVAQQAIK 482
>gi|19704560|ref|NP_604122.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|24212037|sp|Q8R635.1|MURE_FUSNN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|19714848|gb|AAL95421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 485
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 143/373 (38%), Positives = 213/373 (57%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y I GD E+ TTP+++ + + K L E V+ME SSH L +GR +DF
Sbjct: 131 IGTIEYKI-GDKVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLEIGRVEVLDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D + V+N+DD + D
Sbjct: 190 DYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDI--NNSVINVDDEYGKRLYDEFIVD 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ +EN L+ + S + + V + I ++ LLG N+YN L A+ +
Sbjct: 248 NPEIISYGIEN-----GDLEGDYSD-DGYIDVKYKNQIEKVKFSLLGDFNLYNTLGAIGI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G +E+I++ + + A PGR E +D Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 ALKIGISMEEILKRVSNIKAAPGRFEALDCGQDYKVIVDYAHTPDALVNVIVAARNIKNG 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K+A D SDV ILTSDNP E P I DD+ G
Sbjct: 362 SRIITIFGCGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
++K +DY F R A++ A+ M E+ D++++ GKGHETY I G KK
Sbjct: 416 -FIK--SDDY----------FFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|344996595|ref|YP_004798938.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Caldicellulosiruptor lactoaceticus 6A]
gi|343964814|gb|AEM73961.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Caldicellulosiruptor lactoaceticus 6A]
Length = 500
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 146/380 (38%), Positives = 222/380 (58%), Gaps = 28/380 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I G ++E+ TTP++ +Q L +M + G ++VVME SSH L L R
Sbjct: 149 KVGLIGTIKNMI-GSKEIEAQHTTPESYDLQKLFWQMKNEGVDSVVMEVSSHSLELYRVY 207
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
+ DFD+ VFTNLT+DH+DFHGT E Y AK KLF ++VVN DD I +
Sbjct: 208 DCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFEM-----SKKRVVNADDSWGKRII-E 261
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
PD VT+A ++ A V +L + + Q + EI+ + G +IYN LAA
Sbjct: 262 MYPDC--VTYA-KDSDAQVCTKNVKLFVNKNQFELWYNGKKEEITLNIPGLFSIYNSLAA 318
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
A I++G L+ I +G+E++ AVPGR E+++ + F +++DYAHTPD L L+ +V ++
Sbjct: 319 AACCISLGIELDTIKKGLEDLKAVPGRFEIVESNERFTIVIDYAHTPDGLLNLMKTVDDV 378
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
A R + + GC G+ DR KRP+M +IA +D I+TSDNP EDPL I+ D+L G+ T
Sbjct: 379 AEGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTSDNPRTEDPLKIIADILEGIRKT 438
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
EY+ +P+ R A++ A+ +E D +V+AGKGHETYQI D
Sbjct: 439 NVEYV---------VIPD---------RYEAIKYAIKNAKENDFIVLAGKGHETYQILKD 480
Query: 364 KKEFFDDREESREALQYVDE 383
+ FD+R+ ++ L+ + E
Sbjct: 481 RTIPFDERKIVKDILKELRE 500
>gi|229196766|ref|ZP_04323508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus m1293]
gi|228586674|gb|EEK44750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus m1293]
Length = 499
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 138/350 (39%), Positives = 201/350 (57%), Gaps = 24/350 (6%)
Query: 33 VQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNA 92
+Q + M + + VME +S GL + R +F IAVFTNLT+DH+D+HGT EY++
Sbjct: 167 LQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFHEYKHV 226
Query: 93 KAKLFSRMVD----PERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFE 148
K LF+R+ + E+ V+N DDP+ F + V+T+ + N+ ADV
Sbjct: 227 KGLLFARLGNDLSTTEKKIAVLNADDPSVEYF--KKITSAEVITYGIHNR-ADVQAKNIN 283
Query: 149 LSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVP 208
LS + LV++ +G +EIS L+GR N+YN LAA+ V I G PL +I + + +
Sbjct: 284 LSPKGIRFLVSSFNGEIEISLNLVGRFNVYNALAAITVAIVEGIPLTNICDSLSNLKCIE 343
Query: 209 GRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTK 268
GR E+IDE Q F VIVDYAHTPDAL +L ++ E + ++ITV GC G+ D KR +M
Sbjct: 344 GRMEIIDENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGG 403
Query: 269 IATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLH 328
IA SD +TSDNP +EDP I+ D+ G +L+ +Y +
Sbjct: 404 IAGSYSDFVFITSDNPRSEDPQAIMKDIEKG-------FLQNNNLNYKVEVD-------- 448
Query: 329 DIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
R +A+ A+ M D+V++AGKGHETYQI D FDD+E++R+A+
Sbjct: 449 --RELAINHAINMASSNDIVLIAGKGHETYQILKDSTIHFDDKEKARQAI 496
>gi|342215265|ref|ZP_08707915.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella sp. oral taxon 780 str. F0422]
gi|341588651|gb|EGS32036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella sp. oral taxon 780 str. F0422]
Length = 494
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 214/382 (56%), Gaps = 23/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ +V I D TTPD +Q ++ +M+ G +ME SSH LALGR
Sbjct: 130 GYTVGIIGTVHILID-DQSYPIHNTTPDVADLQQILQQMVDAGVTHCIMEVSSHALALGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
+ V++D AVFTNLT+DH+DFH T + Y AK+KLF ++ + ++ V+N+DD
Sbjct: 189 TAGVEYDTAVFTNLTQDHLDFHKTFDNYLAAKSKLFKQVSASYQMKEGKGAVINVDDDYG 248
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P++T++ E K ++ + ++ ++ ++ IS+ + G N+
Sbjct: 249 QAIVDVTTA--PMITYSTEGK-GTMNASELAITAKSSKFNLSYDGKNYSISTKIAGMFNV 305
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAAV + G +E+IV + AVPGR ELI+E Q F V+VDYAHTPD L +L
Sbjct: 306 YNTLAAVGAALYEGLTMEEIVSALTTFTAVPGRFELIEEGQDFAVVVDYAHTPDGLENIL 365
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ +++ RI+ V GC G+ D KRP+M +IA D +TSDNP EDP+ I++D+
Sbjct: 366 QTAKKIVDNRILVVFGCGGDRDATKRPIMGRIAAQFGDRVFVTSDNPRTEDPIQIVEDVE 425
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV + + + Y + D RR A+ A+ GD+V++AGKGHE
Sbjct: 426 VGVKEGLHDAVTYE--------------VIVD-RREAIHKAIGEATTGDVVIIAGKGHED 470
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI D+ FDDRE +REAL+
Sbjct: 471 YQILKDETIHFDDREVAREALK 492
>gi|251797879|ref|YP_003012610.1| UDP-N-acetylmuramyl tripeptide synthetase [Paenibacillus sp. JDR-2]
gi|247545505|gb|ACT02524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2]
Length = 495
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 151/360 (41%), Positives = 204/360 (56%), Gaps = 24/360 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP+A+ +Q ++ M GT +E SSH L GR F AVFTNLT+DH+D+HGT
Sbjct: 150 TTPEALQLQQYLSDMRKEGTAYCAIEVSSHALEQGRVKGCRFRTAVFTNLTQDHLDYHGT 209
Query: 86 EEEYRNAKAKLFSRMVDP------ERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKK 139
E+Y AK FSR+ + +R V+N+DDP + F +V +T+ ++N
Sbjct: 210 MEKYAAAKGLFFSRLGNEYAAKAEDRAYAVLNVDDPVSEQFAKLTAAEV--ITYGIDNH- 266
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
ADV +S T V+T G +I+ ++G+ N+YN LAA++ + G LE I
Sbjct: 267 ADVRASNIRISAQGTTFRVSTFRGKTDIALQMVGKFNVYNALAAISAALIEGVALERIKA 326
Query: 200 GIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259
+E V VPGR E + Q F V+VDYAHTPD L +L +V+ELAP RII V GC G+ D
Sbjct: 327 SLEAVPGVPGRVESVQAGQEFAVVVDYAHTPDGLENVLRAVKELAPPRIICVFGCGGDRD 386
Query: 260 RGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPL 319
R KRP+M IA +D ++TSDNP EDP IL D+ AG+ LK G
Sbjct: 387 RTKRPIMGSIAARYADYVLVTSDNPRTEDPDLILKDIEAGL-------LKDG-------- 431
Query: 320 PNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
R L RR A+ AV M GD+V++AGKGHETYQI G FDDR ++EA++
Sbjct: 432 ITSDRYELKVDRRAAIEKAVEMASPGDVVLIAGKGHETYQIIGSVTHPFDDRLVAKEAIR 491
>gi|170760634|ref|YP_001786880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A3 str. Loch Maree]
gi|169407623|gb|ACA56034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A3 str. Loch Maree]
Length = 483
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 150/394 (38%), Positives = 219/394 (55%), Gaps = 55/394 (13%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+L +++ YI G+ K+ES RTTP+++ +Q L M+ + VME SSH L L R
Sbjct: 131 GYKVGLLGTIANYI-GNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V+F A+FTNLT+DH+DFH T E Y N+K LF V+NIDD +
Sbjct: 190 VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA-----QNSVINIDDSYGEKVL 244
Query: 122 --AQGNPDVPVVTFAMENK---KAD---VHPLKFEL-SLFETQ---VLVNTPHGILEISS 169
A GN +T+ +E KA+ +H E ++F+ + + +N P
Sbjct: 245 KKALGNK----ITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP-------- 292
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYA 227
G++NIYN L ++ + G PL+ I + ++ +VPGRCE++ + G VIVDYA
Sbjct: 293 ---GKYNIYNALGSIGACLLEGIPLKTIKEALADMPSVPGRCEIVTKNYNLGYDVIVDYA 349
Query: 228 HTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNE 287
HTPD L +L++ RE R+I+V GC G+ DR KRP+M K+ ++ SD+ I+TSDNP E
Sbjct: 350 HTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTE 409
Query: 288 DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347
DP I+ D+L G+ E D Y + RR A+R A+ + +E D+
Sbjct: 410 DPTLIIKDVLEGI-----------EKDNYIVVEG---------RRDAIRKAMEIAKENDV 449
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQYV 381
+VVAGKGHE YQI DK FD+RE E ++ V
Sbjct: 450 IVVAGKGHEDYQILKDKTIHFDEREVIEELIKEV 483
>gi|418274563|ref|ZP_12890061.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Lactobacillus plantarum subsp. plantarum NC8]
gi|376010129|gb|EHS83455.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Lactobacillus plantarum subsp. plantarum NC8]
Length = 550
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 211/387 (54%), Gaps = 45/387 (11%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ I D KL + TTPDA+ Q +A M G E V ME SS L LGR
Sbjct: 189 TGLIGTMYRKIK-DEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWG 247
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPNATS 119
+D+DIAVFTNLT+DH+DFH T +Y AKA LF+++ D V+N DDP
Sbjct: 248 IDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGRE 307
Query: 120 FIAQGNPDVPVVTFAM--------ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGL 171
F + V+TF + +N + H +F+LS+F + ++ L
Sbjct: 308 F--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFG---------HVTHVTMQL 356
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD 231
+G+ N+YN+LAA A A G P + I++ +E+V V GR + + VIVDY+HTPD
Sbjct: 357 IGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPD 416
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
L L+++++ A + I VVGC G+ D+ KRP M KIA + S I TSDNP EDP
Sbjct: 417 GLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTM 476
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL+DM+AGV PN + D R VA+ A+ + GD+V++A
Sbjct: 477 ILNDMVAGV-------------------PNANVPVYED-RHVAIAKAIEAAQPGDVVLIA 516
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI G K FDD EE+ +AL
Sbjct: 517 GKGHEDYQIIGRTKHHFDDSEEAAKAL 543
>gi|254722567|ref|ZP_05184355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. A1055]
Length = 492
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 140/351 (39%), Positives = 204/351 (58%), Gaps = 26/351 (7%)
Query: 33 VQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNA 92
+Q + M + + VME +S GL + R +F IAVFTNLT+DH+D+HGT +EY++
Sbjct: 160 LQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHV 219
Query: 93 KAKLFSRMVDP----ERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFE 148
K+ LF+R+ + ++ V+N DDP+ F + V+T+ + N ADV
Sbjct: 220 KSLLFARLGNNLSTIDKKIAVLNADDPSVEYF--KKITSAEVITYGIHNG-ADVQAKNIT 276
Query: 149 LSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVP 208
LS + LV++ +G +E+S L+GR N+YN LAA+ V + G PL +I + + ++
Sbjct: 277 LSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIE 336
Query: 209 GRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTK 268
GR E+IDE Q F VIVDYAHTPDAL +L ++RE A +IITV GC G+ D KR +M
Sbjct: 337 GRMEIIDENQDFLVIVDYAHTPDALENVLSTIREFAKGKIITVFGCGGDRDAKKRSIMGG 396
Query: 269 IATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYG-ENDYYPPLPNGHRLFL 327
IA SD +TSDNP +EDP I+ D+ G++ L Y E D
Sbjct: 397 IAGSYSDFVFITSDNPRSEDPQAIMKDIEK--GFSQNNNLNYKVEVD------------- 441
Query: 328 HDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
R +A+ A+ M D+V++AGKGHETYQI D FDD+E++R+A+
Sbjct: 442 ---RELAINHAINMASSNDIVLIAGKGHETYQILKDSTIHFDDKEKARQAI 489
>gi|312794108|ref|YP_004027031.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312181248|gb|ADQ41418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 495
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 146/380 (38%), Positives = 221/380 (58%), Gaps = 28/380 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I G ++E+ TTP++ +Q L +M + G ++VVME SSH L L R
Sbjct: 144 KVGLIGTIKNMI-GSKEIEAQHTTPESYDLQKLFWQMKNEGVDSVVMEVSSHSLELFRVY 202
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
+ DFD+ VFTNLT+DH+DFHGT E Y AK KLF ++VVN DD I +
Sbjct: 203 DCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFGM-----SKKRVVNADDSWGKRII-E 256
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
PD VT+A ++ A V +L + + Q + EI+ + G +IYN LAA
Sbjct: 257 MYPDC--VTYA-KDSDAQVCAKNIKLFVNKNQFEMWYNGKKEEITLNIPGLFSIYNSLAA 313
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
A I++G L+ I +G+E++ AVPGR E+++ + F +++DYAHTPD L L+ +V ++
Sbjct: 314 AACCISLGIELDTIKKGLEDLKAVPGRFEIVESNERFTIVIDYAHTPDGLLNLMKTVDDV 373
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
A R + + GC G+ DR KRP+M +IA +D I+TSDNP EDPL I+ D+L G+ T
Sbjct: 374 AEGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTSDNPRTEDPLKIIADILEGIRKT 433
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
EY+ +P+ R A++ A+ +E D +V+AGKGHETYQI D
Sbjct: 434 NVEYV---------VIPD---------RYEAIKYAIKNAKENDFIVLAGKGHETYQILKD 475
Query: 364 KKEFFDDREESREALQYVDE 383
+ FD+R ++ L+ + E
Sbjct: 476 RTIPFDERRIVKDILKELRE 495
>gi|428770446|ref|YP_007162236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cyanobacterium aponinum PCC 10605]
gi|428684725|gb|AFZ54192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cyanobacterium aponinum PCC 10605]
Length = 496
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 146/377 (38%), Positives = 209/377 (55%), Gaps = 25/377 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+T + ++ Y D + + TTP AV +Q +A+ L E VVME SSH LA R
Sbjct: 138 KTALFGTL-YARWQDYQKTATHTTPFAVDLQAQLAEALEAKNEYVVMEVSSHALAQKRIR 196
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
FD+AVFTNLT+DH+D+H E+Y AKA LFS D R R ++N DD I Q
Sbjct: 197 GCHFDVAVFTNLTQDHLDYHKDMEDYFEAKALLFSE--DYLRGRAIINYDDDYGQRLI-Q 253
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
V ++++ N AD++ + +++TP G + SS L+G+ N+ N+LA+
Sbjct: 254 RLAQKQVWSYSVNNTSADLYTSDLTYQADGVKGILHTPEGSINFSSPLVGQFNLSNLLAS 313
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELID--EEQAFGVIVDYAHTPDALSRLLDSVR 241
V +++G LE I + VPGR E + Q VIVDYAHTPD+L LL + R
Sbjct: 314 VGAVLSLGVSLEVITENLSAFAGVPGRMERVHFLPHQDISVIVDYAHTPDSLENLLQAAR 373
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
++I V GC G+ DR KRP+M KIA +D+ ++TSDNP E+P IL D+L G+
Sbjct: 374 PFISGKMICVFGCGGDRDRTKRPIMGKIAAQGADIVVVTSDNPRTENPEQILADILTGI- 432
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
P + + R +A++ A++M + GD V++AGKGHE YQI
Sbjct: 433 ------------------PEDIKPIVQCDRALAIQEAISMAQSGDGVLIAGKGHEDYQIL 474
Query: 362 GDKKEFFDDREESREAL 378
G +K FDDREE+R+AL
Sbjct: 475 GTEKIHFDDREEARKAL 491
>gi|339629731|ref|YP_004721374.1| UDP-N-acetylmuramyl tripeptide synthetase [Sulfobacillus
acidophilus TPY]
gi|379007154|ref|YP_005256605.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Sulfobacillus acidophilus DSM 10332]
gi|339287520|gb|AEJ41631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfobacillus
acidophilus TPY]
gi|361053416|gb|AEW04933.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Sulfobacillus acidophilus DSM 10332]
Length = 493
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/383 (38%), Positives = 211/383 (55%), Gaps = 31/383 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
L+ + + G + RTTP+A +Q ++ M G A VME SSH L L R V++
Sbjct: 134 LTGTLHTLIGQETFKVVRTTPEAPDLQRILRHMADRGMRAAVMEVSSHALVLSRVDAVEY 193
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD--PERHRK-VVNIDDPNATSFIAQG 124
D+ VFTNLT+DH+DFH E Y AKA LF R+ P+ R V+N DDP + + G
Sbjct: 194 DVGVFTNLTQDHLDFHHDIESYFRAKALLFERLGTGRPKGPRAAVINRDDPYSERLM--G 251
Query: 125 NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILE-ISSGLLGRHNIYNILAA 183
VPV+T+ ++ + +D+ + ++ Q + P G+ + + G+ GR N+ N LAA
Sbjct: 252 MTGVPVLTYGIQ-QPSDIRATQVNITSRGVQFVAEFPEGVSQPVEFGMPGRFNVLNALAA 310
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+AVG G ++ + VPGR E IDE Q F VIVDYAHTPD L L + RE
Sbjct: 311 MAVGYVYGLTPSEMAESLARYPGVPGRFERIDEGQPFTVIVDYAHTPDGLENALKTAREF 370
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG---V 300
+ +I V G G+ DRGKRPLM ++A +D T+LT+DNP +EDPLDI+ + G V
Sbjct: 371 SLGKIGVVFGAGGDRDRGKRPLMGEVAGRLADWTVLTADNPRSEDPLDIIHQIAEGVNRV 430
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
G Q+ L R A+R A+ + GD+V++ GKGHETYQI
Sbjct: 431 GGQWQQELD---------------------RERAIRLALNQAQPGDVVLIVGKGHETYQI 469
Query: 361 EGDKKEFFDDREESREALQYVDE 383
D FDDRE +R+ L+ +++
Sbjct: 470 YRDATIHFDDREVARQILRELNK 492
>gi|188589397|ref|YP_001921591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum E3 str. Alaska E43]
gi|188499678|gb|ACD52814.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum E3 str. Alaska E43]
Length = 484
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 217/390 (55%), Gaps = 51/390 (13%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ YI G+ KL + RTTP+++ +Q L M++ G E VME SSH L L R
Sbjct: 130 GKKVGLIGTIANYI-GNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVSSHSLELDR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
VDF++ +FTNLTRDH+DFH T E Y N+K KLF R + +++N DD I
Sbjct: 189 VYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFKR-----SNIRIINNDDNYGKQVI 243
Query: 122 AQGNP-------DVPV---VTFAMENKKADVHPLKFELSL-FETQVLVNTPHGILEISSG 170
N + + F ++K + F+++L E + +++ P
Sbjct: 244 KDLNKLKAKNIYEYSIREDSNFKAFDEKMGSKNISFKVNLEKEEEFILSIP--------- 294
Query: 171 LLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE--LIDEEQAFGVIVDYAH 228
G +NIYN L A+ + P+E I GI +V VPGRCE + + +I+DYAH
Sbjct: 295 --GEYNIYNALGAIGACYKLNIPMEAIREGINKV-IVPGRCERTATNYNLPYDIIIDYAH 351
Query: 229 TPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
TPD L +L++ R R+I + GC G+ D+ KRP M KI TD +D+ I+TSDNP +E+
Sbjct: 352 TPDGLQNILETARGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIVTSDNPRSEE 411
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P+ I++D+L G+ E D Y + N R+ A++ A+ + +E D++
Sbjct: 412 PMKIIEDILVGI-----------EKDNYEVIEN---------RKDAIKKAMDIAKENDVI 451
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREAL 378
V+AGKGHETYQI DK FD+RE ++ L
Sbjct: 452 VIAGKGHETYQILKDKTIHFDEREIVKQIL 481
>gi|423459356|ref|ZP_17436153.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus
BAG5X2-1]
gi|401144434|gb|EJQ51964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus
BAG5X2-1]
Length = 493
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 218/382 (57%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ + + G + T + ++Q + M ++ T+ VME +S GL + R
Sbjct: 130 GFQTGLMGNNGVKV-GSKWYPTDINTQEPPILQRNLQTMKNHNTDYCVMEVTSQGLHMER 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD----PERHRKVVNIDDPNA 117
+F A+FTNLT+DH+D+HGT EEY++ K LFSR+ + +++ + N DDP+
Sbjct: 189 VKGCNFKTAIFTNLTQDHLDYHGTFEEYKHVKGLLFSRLGNDFSITDKNFAIFNADDPSV 248
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + V+T+ + N ADV LS + LV++ +G +EI+ L+G N+
Sbjct: 249 EYF--KKITSAEVITYGIHNG-ADVQAKNITLSPKGIRFLVSSFNGEIEINLNLVGHFNV 305
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ + G PL +I + ++ ++ GR E+IDE Q F VIVDYAHTPDAL +L
Sbjct: 306 YNALAAITAALVEGIPLTNISDSLSDLKSIEGRMEIIDENQDFLVIVDYAHTPDALENVL 365
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E + +IITV GC G+ D KRP+M +IA SD +TSDNP +EDP I+ D+
Sbjct: 366 TTISEFSKGKIITVFGCGGDRDAKKRPIMGEIAGSYSDFVYITSDNPRSEDPQAIMKDIE 425
Query: 298 AGVGWTMQEYLKYG-ENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
G++ L Y E D R +A++ A+ M D+V++AGKGHE
Sbjct: 426 K--GFSQNNNLNYKVEVD----------------RELAIKHAINMASSNDIVLIAGKGHE 467
Query: 357 TYQIEGDKKEFFDDREESREAL 378
TYQI D FDD+E++R+A+
Sbjct: 468 TYQILKDLTIHFDDKEKARQAI 489
>gi|187932581|ref|YP_001886634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum B str. Eklund 17B]
gi|187720734|gb|ACD21955.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum B str. Eklund 17B]
Length = 484
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 217/390 (55%), Gaps = 51/390 (13%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ YI G+ KL + RTTP+++ +Q L M++ G E VME SSH L L R
Sbjct: 130 GKKVGLIGTIANYI-GNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVSSHSLELDR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
VDF++ +FTNLTRDH+DFH T E Y N+K KLF R + +++N DD I
Sbjct: 189 VYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFKR-----SNIRIINNDDNYGKQVI 243
Query: 122 AQGNP-------DVPV---VTFAMENKKADVHPLKFELSL-FETQVLVNTPHGILEISSG 170
N + + F ++K + F+++L E + +++ P
Sbjct: 244 KDLNKLKAKNIYEYSIKEDSNFKAFDEKMGSKNISFKVNLEKEEEFILSIP--------- 294
Query: 171 LLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE--LIDEEQAFGVIVDYAH 228
G +NIYN L A+ + P+E I GI +V VPGRCE + + +I+DYAH
Sbjct: 295 --GEYNIYNALGAIGACYKLNIPMEAIKNGINKV-IVPGRCERTATNYNLPYDIIIDYAH 351
Query: 229 TPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
TPD L +L++ R R+I + GC G+ D+ KRP M KI TD +D+ I+TSDNP +E+
Sbjct: 352 TPDGLQNILETARGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIVTSDNPRSEE 411
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P+ I++D+L G+ E D Y + N R+ A++ A+ + +E D++
Sbjct: 412 PMRIIEDILVGI-----------EKDNYEIIEN---------RKDAIKKAMDIAKENDVI 451
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREAL 378
V+AGKGHETYQI DK FD+RE ++ L
Sbjct: 452 VIAGKGHETYQILKDKTIHFDEREVVKQIL 481
>gi|428303763|ref|YP_007140588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Crinalium epipsammum PCC 9333]
gi|428245298|gb|AFZ11078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Crinalium epipsammum PCC 9333]
Length = 493
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 205/357 (57%), Gaps = 28/357 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A + G + VME SSH LA GR F++AVFTNLT+DH+D+H
Sbjct: 158 TTPFAVELQKQLADAIAAGCKMGVMEVSSHALAQGRVLGCPFEVAVFTNLTQDHLDYHRD 217
Query: 86 EEEYRNAKAKLFSRMVDPE--RHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVH 143
E+Y AKA LFS PE + R V+N+DD I + +P + ++++ + KAD+
Sbjct: 218 MEDYFAAKALLFS----PEYLQGRAVINLDDDYGKRLI-EKSPSEKIWSYSVNDSKADLW 272
Query: 144 PLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEE 203
+++TP G + SS L+G++N+ N+LAAV + +G LE +V+ + E
Sbjct: 273 TSDLNYGQTGVSGMLHTPAGEMAFSSPLVGQYNLENLLAAVGTILHLGLDLESVVQALPE 332
Query: 204 VDAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRG 261
VPGR E I EQ VIVDYAHTPD+L LL + R ++I V GC G+ DR
Sbjct: 333 FVGVPGRMERVQITPEQDISVIVDYAHTPDSLENLLKAARPFIQGKMICVFGCGGDRDRT 392
Query: 262 KRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPN 321
KRPLM IA + +D ++TSDNP EDP IL D+LAG+ P
Sbjct: 393 KRPLMGAIAAELADQVVVTSDNPRTEDPEKILQDVLAGI-------------------PE 433
Query: 322 GHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ ++ R A++ A+ + GD V++AGKGHE YQI G +K FDDRE++R+AL
Sbjct: 434 SVKPIVNSDRATAIQTAILEAKPGDGVLIAGKGHEDYQILGTEKIHFDDREQARDAL 490
>gi|52142904|ref|YP_083926.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
[Bacillus cereus E33L]
gi|51976373|gb|AAU17923.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
[Bacillus cereus E33L]
Length = 357
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 140/351 (39%), Positives = 202/351 (57%), Gaps = 26/351 (7%)
Query: 33 VQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNA 92
+Q + M + + VME +S GL + R +F IAVFTNLT+DH+D+HGT EY++
Sbjct: 25 LQRNLQMMKNRNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFLEYKHV 84
Query: 93 KAKLFSRMVD----PERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFE 148
K LF+R+ + E+ V+N DDP+ F + V+T+ + N+ ADV
Sbjct: 85 KGLLFARLGNDLSTTEKKIAVLNADDPSVEYF--KKITSAEVITYGIHNR-ADVQAKNIN 141
Query: 149 LSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVP 208
LS + LV++ +G +E+S L+GR NIYN LAA+ V I G PL +I + + ++
Sbjct: 142 LSPKGIRFLVSSFNGEIEVSLNLVGRFNIYNALAAITVAIVEGIPLTNICDSLSNLKSIE 201
Query: 209 GRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTK 268
GR E+IDE Q F VIVDYAHTPDAL +L ++ E + ++ITV GC G+ D KR +M
Sbjct: 202 GRMEIIDENQDFFVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGG 261
Query: 269 IATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYG-ENDYYPPLPNGHRLFL 327
IA SD +TSDNP +EDP I+ D+ G++ L Y E D
Sbjct: 262 IAGSYSDFVFITSDNPRSEDPQAIMKDIEK--GFSQNNNLNYKVEVD------------- 306
Query: 328 HDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
R +A+ A+ M D+V++AGKGHETYQI D FDD+E++R+A+
Sbjct: 307 ---RELAINHAINMASSNDIVLIAGKGHETYQILKDSTIHFDDKEKARQAI 354
>gi|220906058|ref|YP_002481369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cyanothece sp. PCC 7425]
gi|219862669|gb|ACL43008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7425]
Length = 501
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/356 (39%), Positives = 194/356 (54%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A + G VME SSH LA GR F + VFTNLT+DH+DFH
Sbjct: 161 TTPFAVELQGQLASAVKAGCPFAVMEVSSHALAQGRVQGCTFQVGVFTNLTQDHLDFHKD 220
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y +AKA LFS + ++N DDP I Q P V T++ + AD +
Sbjct: 221 LEDYFSAKALLFSPGY--LSGKAIINQDDPYGQRLIQQLEP-AQVWTYSTSDSTADFYTR 277
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ +++TP G + +S L+G+ N+ N+LAAV +++G L I + +
Sbjct: 278 DLNYLANGVEGILHTPEGEIAFTSPLVGQFNVANLLAAVGAALSLGVNLTTIAAALPQFS 337
Query: 206 AVPGRCELID--EEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR + + Q VIVDYAHTPD+L +L + R R+I V GC G+ DR KR
Sbjct: 338 GVPGRMQQVQVAPSQDISVIVDYAHTPDSLENMLRAARPFVKHRMICVFGCGGDRDRTKR 397
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M IA +D ++TSDNP EDP IL+D+L GV P+G
Sbjct: 398 PKMGGIAAQLADQVVVTSDNPRTEDPQRILEDILTGV-------------------PDGV 438
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
L + RR A++ A+ + GD V++AGKGHE YQI G +K FDDREE++ ALQ
Sbjct: 439 NLIVEGDRRKAIQTAILNAQPGDSVLIAGKGHEDYQILGTEKVHFDDREEAQAALQ 494
>gi|374997241|ref|YP_004972740.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfosporosinus
orientis DSM 765]
gi|357215607|gb|AET70225.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfosporosinus
orientis DSM 765]
Length = 495
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/379 (37%), Positives = 211/379 (55%), Gaps = 25/379 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I+G + + RTTP+++ VQ L+++M+ G VME SSH L+LGR
Sbjct: 132 GKKVGLIGTLGARINGRD-IPGERTTPESIEVQKLLSEMVDEGVSLAVMEVSSHALSLGR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
+ +FD +FTNLT+DH+D+H T ++Y NAK++LF+ + ++ + ++N DDP
Sbjct: 191 VAGCEFDAGIFTNLTQDHLDYHKTMKDYLNAKSRLFAGLHGEKQPKISILNGDDPAFGEL 250
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
PVV++ + N D H ++ + V + EIS G ++YN
Sbjct: 251 CRVSA--APVVSYGIHNS-VDYHAEDVRVTTEGVRFQVRFKENLQEISYATPGFFSVYNA 307
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA A G+ G + + E+ VPGR E + Q F VIVDYAHTPD L ++ +
Sbjct: 308 LAAFAWGVERGYSAGTVAEALAEIAGVPGRFESVRMGQPFQVIVDYAHTPDGLENVVRTA 367
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R+ R++TV GC G+ DR KRPLM ++A SD I+TSDNP EDP I+ ++L GV
Sbjct: 368 RDFTEGRLLTVFGCGGDRDRTKRPLMGEVAAQGSDFLIVTSDNPRTEDPDQIIKEILTGV 427
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ + D RR A+R A M + GD +++AGKGHETYQI
Sbjct: 428 SEV-------------------ESIAIRD-RREAIRKACHMAKPGDTILIAGKGHETYQI 467
Query: 361 EGDKKEFFDDREESREALQ 379
G + FDDRE REAL+
Sbjct: 468 FGTEVHPFDDREVVREALR 486
>gi|433463281|ref|ZP_20420840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Halobacillus sp. BAB-2008]
gi|432187791|gb|ELK45048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Halobacillus sp. BAB-2008]
Length = 491
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/384 (37%), Positives = 216/384 (56%), Gaps = 29/384 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
RTG++ ++ I GD TTPDA+ +Q ++ M G + V+ME SSH L GR
Sbjct: 130 RTGIIGTIQVKI-GDRVFPVKNTTPDALTLQRYLSDMRAEGVDQVIMEVSSHALDQGRVY 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHR-KVVNIDDPNATS 119
DFDIAVFTNLT DH+D+H ++Y AK+ LF+++ + R + V+N D P+A
Sbjct: 189 GCDFDIAVFTNLTMDHLDYHDNFDDYLRAKSLLFAQLGNGYNKGREKFAVINKDSPSAIK 248
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
FI + ++T+ + +++ADV + L TQ + TP G + I S ++G +IYN
Sbjct: 249 FIRSTSQ--ALLTYGI-HERADVMAKDYVLKETGTQFQLITPIGNVRIDSPMMGMFSIYN 305
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA V + G PL I + + V GR E I E Q FGV++DYAHTPD+L ++ +
Sbjct: 306 MLAAAGVAVLSGIPLATIQQSLGSSKGVKGRFEPIREGQDFGVVIDYAHTPDSLENVIQT 365
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+ + R I VVGC G+ DR KRPLM +++ D +D+ T+DNP E+P I DM G
Sbjct: 366 LDGICQGRKIVVVGCGGDRDRSKRPLMARLSVDNADLVFFTNDNPRTEEPAQIFHDMTIG 425
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ G+ + D RR A++ A+ ++GD+V++AGKGHETYQ
Sbjct: 426 L--------------------KGNYTIIED-RREAIKQALKQAKQGDIVLIAGKGHETYQ 464
Query: 360 IEGDKKEFFDDREESREALQYVDE 383
+ FDD E +++ L+ + E
Sbjct: 465 EMDGVRHPFDDGETAKQILREMKE 488
>gi|288553166|ref|YP_003425101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus pseudofirmus OF4]
gi|288544326|gb|ADC48209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus pseudofirmus OF4]
Length = 487
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 154/378 (40%), Positives = 216/378 (57%), Gaps = 26/378 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
RTG++ ++ Y GD +L++ TTP+++ +Q +M+ E +ME SSH L LGR
Sbjct: 131 RTGLIGTM-YTKIGDVELKTQNTTPESITLQKRFKEMVDADVETALMEVSSHALHLGRVR 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD--PERHRKVVNIDDPNATSFI 121
DFDIAVFTNLT DH+D+H T E Y AK LF+++ + E V+N DD A +
Sbjct: 190 GCDFDIAVFTNLTPDHLDYHETMEAYLFAKGLLFAQLGNRFTEGKVAVLNRDDEAADELL 249
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
DV +T+ +ENK AD+ E++ T + +EI L+G ++YN L
Sbjct: 250 KMTTVDV--LTYGVENK-ADIMAEDIEITARGTTFTLKAGTESIEIEMKLIGMFSVYNAL 306
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA + IA G PLE I + +E V V GR E +D Q + VIVDYAHT D+L +L +VR
Sbjct: 307 AAASAAIASGIPLEQIKKSLEAVHGVAGRFEPVDAGQDYTVIVDYAHTSDSLENVLTTVR 366
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
E A +I VVGC G+ DR KRP+M +IAT +D I TSDNP +EDP ILDDM G+
Sbjct: 367 EFAKGKISVVVGCGGDRDRTKRPVMAEIATKYADNAIFTSDNPRSEDPKQILDDMTHGL- 425
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
E+ Y + R+ A+ A+ + D++V+AGKGHETYQI
Sbjct: 426 ----------ESSNYTVCVD---------RKEAIYQAINDANKDDILVIAGKGHETYQII 466
Query: 362 GDKKEFFDDREESREALQ 379
G FDDRE +++A++
Sbjct: 467 GANTTHFDDREVAKQAIE 484
>gi|428781498|ref|YP_007173284.1| UDP-N-acetylmuramyl tripeptide synthetase [Dactylococcopsis salina
PCC 8305]
gi|428695777|gb|AFZ51927.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dactylococcopsis salina
PCC 8305]
Length = 495
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/357 (40%), Positives = 198/357 (55%), Gaps = 28/357 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A+ +Q +A G + V+E SSH LA GR F+++VFTNLT+DH+DFH T
Sbjct: 157 TTPFAIELQEQLAAAEQAGNQYGVLEVSSHALAQGRVKGCAFEVSVFTNLTQDHLDFHPT 216
Query: 86 EEEYRNAKAKLFSRMVDPE--RHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVH 143
E+Y AKA LF PE ++R V+N DD +A+ + V +++ + AD++
Sbjct: 217 MEDYFQAKALLFR----PEYLKNRAVINQDDLYGKRLLAELTFE-QVWRYSITDSSADLY 271
Query: 144 PLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEE 203
Q + TP G +E S L+G N+ N+LAAV + +G L I + + +
Sbjct: 272 TENLRYEANGVQGTLKTPQGEIEFRSPLVGEFNLSNLLAAVGAALHLGVDLSTIAQCLPQ 331
Query: 204 VDAVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRG 261
VPGR E ID +Q VIVDYAHTPD+L LL + R R+I V GC G+ DR
Sbjct: 332 FSGVPGRMERVEIDPKQEISVIVDYAHTPDSLENLLTAARPFIAGRMICVFGCGGDRDRS 391
Query: 262 KRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPN 321
KRP+M KIA +DV ++TSDNP EDP I+DD+L G +
Sbjct: 392 KRPMMGKIAGQLADVAVVTSDNPRTEDPQQIIDDILGG-------------------MTE 432
Query: 322 GHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
G + + R VA+ A+ M GD V++AGKGHE YQI G +K FDDRE++R AL
Sbjct: 433 GVKPIVERDRAVAIAEAIKMARSGDGVLIAGKGHEDYQILGTEKIHFDDREQARNAL 489
>gi|380031931|ref|YP_004888922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lactobacillus plantarum WCFS1]
gi|46577019|sp|Q88Y23.2|MURE_LACPL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|342241174|emb|CCC78408.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Lactobacillus plantarum WCFS1]
Length = 493
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 210/387 (54%), Gaps = 45/387 (11%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ I D KL + TTPDA+ Q +A M G E V ME SS L LGR
Sbjct: 132 TGLIGTMYRKIK-DEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPNATS 119
+D+DIAVFTNLT+DH+DFH T +Y AKA LF+++ D V+N DDP
Sbjct: 191 IDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGRE 250
Query: 120 FIAQGNPDVPVVTFAM--------ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGL 171
F + V+TF + +N + H +F+LS+F + ++ L
Sbjct: 251 F--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFG---------HVTHVTMQL 299
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD 231
+G+ N+YN+LAA A A G P + I++ +E+V V GR + + VIVDY+HTPD
Sbjct: 300 IGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPD 359
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
L L+++++ A + I VVGC G+ D+ KRP M KIA + S I TSDNP EDP
Sbjct: 360 GLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTM 419
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL+DM+AGV PN D R VA+ A+ + GD+V++A
Sbjct: 420 ILNDMVAGV-------------------PNADVPVYED-RHVAIAKAIEAAQPGDVVLIA 459
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI G K FDD EE+ +AL
Sbjct: 460 GKGHEDYQIIGRTKHHFDDSEEAAKAL 486
>gi|237742227|ref|ZP_04572708.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. 4_1_13]
gi|229429875|gb|EEO40087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. 4_1_13]
Length = 485
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 209/373 (56%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y I GD E+ TTP+++ + + K L E VVME SSH L +GR VDF
Sbjct: 131 IGTIEYKI-GDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVEVVDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D + V+NIDD + D
Sbjct: 190 DYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDV--NNSVINIDDEYGKRLYDEFIVD 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ ++ + L + + + + +I LLG N+YN L A+ +
Sbjct: 248 NPEIISYGIDGGDLEGEYLD------DGYIDIKYKEQVEKIKFALLGDFNLYNTLGAIGI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G +E+I++ + + A PGR E +D Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 ALKIGISMEEILKRVSTIKAAPGRFEALDCGQDYKVIVDYAHTPDALVNVIVAARNIKNV 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
R+IT+ GC G+ DR KRP+M K+A D SD+ ILTSDNP E P I DD+ G
Sbjct: 362 NRVITIFGCGGDRDRTKRPIMAKVAEDLSDIVILTSDNPRTESPEQIFDDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
++K +DY F R A++ AV M E+ D++++ GKGHETY I G KK
Sbjct: 416 -FIK--SDDY----------FFEPDREKAIKVAVNMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|300767780|ref|ZP_07077690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|300494765|gb|EFK29923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
Length = 550
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 210/387 (54%), Gaps = 45/387 (11%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ I D KL + TTPDA+ Q +A M G E V ME SS L LGR
Sbjct: 189 TGLIGTMYRKIK-DEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWG 247
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPNATS 119
+D+DIAVFTNLT+DH+DFH T +Y AKA LF+++ D V+N DDP
Sbjct: 248 IDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGRE 307
Query: 120 FIAQGNPDVPVVTFAM--------ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGL 171
F + V+TF + +N + H +F+LS+F + ++ L
Sbjct: 308 F--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFG---------HVTHVTMQL 356
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD 231
+G+ N+YN+LAA A A G P + I++ +E+V V GR + + VIVDY+HTPD
Sbjct: 357 IGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPD 416
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
L L+++++ A + I VVGC G+ D+ KRP M KIA + S I TSDNP EDP
Sbjct: 417 GLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTM 476
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL+DM+AGV PN D R VA+ A+ + GD+V++A
Sbjct: 477 ILNDMVAGV-------------------PNADVPVYED-RHVAIAKAIEAAQPGDVVLIA 516
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI G K FDD EE+ +AL
Sbjct: 517 GKGHEDYQIIGRTKHHFDDSEEAAKAL 543
>gi|357058722|ref|ZP_09119569.1| hypothetical protein HMPREF9334_01286 [Selenomonas infelix ATCC
43532]
gi|355373513|gb|EHG20831.1| hypothetical protein HMPREF9334_01286 [Selenomonas infelix ATCC
43532]
Length = 494
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 150/383 (39%), Positives = 208/383 (54%), Gaps = 26/383 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ + D + TTPD +++Q L+++M G +AVVME SSH L GR
Sbjct: 131 GKRVGLIGTIQVMME-DEVFPTANTTPDVIVMQQLLSEMRARGMDAVVMEVSSHALDQGR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLF---SRMVDPERHRKVVNIDDPNAT 118
+ ++FD AVFTNLT+DH+D+H T E Y AKA+LF S V+N DD
Sbjct: 190 VAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFEYVSAQGTKAGKTAVLNADD--TA 247
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSL--FETQVLVNTPHGILEISSGLLGRHN 176
S I + + PV+++ +E+ AD+ L+ E ++ + + GL G N
Sbjct: 248 SEIMRAHTHCPVISYGVEHD-ADLMAKGVHLAQDGMELTLMYDVAQ-FAHLHIGLTGLFN 305
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+ N+LAA +A DI + VPGR EL+ E Q F VIVDYAHTPD + +
Sbjct: 306 VSNVLAATGAALAEHVSAADIAEALTLFTGVPGRFELVREGQPFSVIVDYAHTPDGMENV 365
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L + R + RII V GC G+ DR KRP+M ++A + +D+ ILTSDNP EDP ILD++
Sbjct: 366 LRTARAVTAGRIIAVFGCGGDRDRTKRPIMGRMAAELADIAILTSDNPRTEDPAAILDEV 425
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
GV L Y L + RR A+ AV GD VV+ GKGHE
Sbjct: 426 ETGV-------LPVIGAKPYEKLVD---------RRTAIFHAVGTARAGDTVVILGKGHE 469
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
YQI DK FDDRE +REA++
Sbjct: 470 NYQILKDKTIHFDDRETAREAIR 492
>gi|312128120|ref|YP_003992994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
hydrothermalis 108]
gi|311778139|gb|ADQ07625.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
hydrothermalis 108]
Length = 486
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/380 (38%), Positives = 219/380 (57%), Gaps = 28/380 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I G ++E+ TTP++ +Q L +M + G ++VVME SSH L L R
Sbjct: 135 KVGLIGTIKNMI-GSREIEAQHTTPESYDLQKLFWQMKNEGVDSVVMEVSSHSLELFRVY 193
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
+ DFD+ VFTNLT+DH+DFHGT E Y AK KLF ++VVN DD I +
Sbjct: 194 DCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFGM-----SKKRVVNADDRWGKRII-E 247
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
PD VT+A ++ A V +L + + Q + EI+ + G +IYN LAA
Sbjct: 248 MYPDS--VTYA-KDSDAQVCARNIKLFVNKNQFELWYNGEKEEITLNIPGLFSIYNSLAA 304
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
A I++G L+ I +G+E + AVPGR E+++ + F +++DYAHTPD L L+ +V E+
Sbjct: 305 SACCISLGIKLDTIKKGLENLKAVPGRFEIVESNEKFTIVIDYAHTPDGLLNLMKTVDEV 364
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
A R + + GC G+ DR KRP+M +IA +D I+TSDNP EDPL I+ D+L G+ T
Sbjct: 365 AEGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTSDNPRTEDPLKIIADILEGIRKT 424
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
EY+ +P+ R A++ A+ E D +V+AGKGHETYQI D
Sbjct: 425 NVEYM---------VIPD---------RYEAIKYAIKNARENDFIVLAGKGHETYQILKD 466
Query: 364 KKEFFDDREESREALQYVDE 383
+ FD+R ++ L+ + E
Sbjct: 467 RTIPFDERRIVKDILKELRE 486
>gi|308179972|ref|YP_003924100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Lactobacillus plantarum subsp. plantarum ST-III]
gi|308045463|gb|ADN98006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Lactobacillus plantarum subsp. plantarum ST-III]
Length = 550
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 210/387 (54%), Gaps = 45/387 (11%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ I D KL + TTPDA+ Q +A M G E V ME SS L LGR
Sbjct: 189 TGLIGTMYRKIK-DEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWG 247
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPNATS 119
+D+DIAVFTNLT+DH+DFH T +Y AKA LF+++ D V+N DDP
Sbjct: 248 IDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGRE 307
Query: 120 FIAQGNPDVPVVTFAM--------ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGL 171
F + V+TF + +N + H +F+LS+F + ++ L
Sbjct: 308 F--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFG---------HVTHVTMQL 356
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD 231
+G+ N+YN+LAA A A G P + I++ +E+V V GR + + VIVDY+HTPD
Sbjct: 357 IGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPD 416
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
L L+++++ A + I VVGC G+ D+ KRP M KIA + S I TSDNP EDP
Sbjct: 417 GLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTM 476
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL+DM+AGV PN D R VA+ A+ + GD+V++A
Sbjct: 477 ILNDMVAGV-------------------PNADVPVYED-RHVAIAKAIEAAQPGDVVLIA 516
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI G K FDD EE+ +AL
Sbjct: 517 GKGHEDYQIIGRTKHHFDDSEEAAKAL 543
>gi|119511957|ref|ZP_01631054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Nodularia spumigena CCY9414]
gi|119463377|gb|EAW44317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Nodularia spumigena CCY9414]
Length = 496
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/358 (41%), Positives = 206/358 (57%), Gaps = 28/358 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A+ ++ G E ME SSH LA GR +F++AVF+NLT+DH+D+H
Sbjct: 156 TTPFAVDLQQQLAEAVNAGCEFGAMEVSSHALAQGRVLGCEFEVAVFSNLTQDHLDYHTD 215
Query: 86 EEEYRNAKAKLFSRMVDPE--RHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVH 143
E+Y AKA LFS PE + R ++N DD IA + + V ++++ N AD+
Sbjct: 216 MEDYFAAKALLFS----PEYLKGRAIINADDDYGQRLIASLSSE-RVWSYSVNNHSADLW 270
Query: 144 PLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEE 203
+++TP G + S L+G++N+ N+LAAV + +G L+ + I E
Sbjct: 271 MSDLSYEPNGVSGMLHTPKGNVAFRSPLVGQYNLENLLAAVGAVLHLGLDLQLVAAAIPE 330
Query: 204 VDAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRG 261
VPGR E I+ EQ VIVDYAHTPD+L LL + R P ++I V GC G+ DR
Sbjct: 331 FPGVPGRMERVQINPEQEISVIVDYAHTPDSLENLLKAARPFIPGKMICVFGCGGDRDRT 390
Query: 262 KRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPN 321
KRP M KIA + +DV +LTSDNP EDP IL D+LAG+ P+
Sbjct: 391 KRPKMGKIAAELADVAVLTSDNPRTEDPERILQDVLAGI-------------------PD 431
Query: 322 GHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+ + R +A+R A+ + GD V++AGKGHE YQI G +K FDDRE +R+ALQ
Sbjct: 432 TVKPTVICDRAIAIRTAILQAQPGDGVLLAGKGHEDYQILGTEKIHFDDREHARDALQ 489
>gi|406837726|ref|ZP_11097320.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lactobacillus vini DSM 20605]
Length = 496
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/388 (37%), Positives = 214/388 (55%), Gaps = 44/388 (11%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ Y GD L + TTPD + +Q ++KM+ G V ME SS L GR
Sbjct: 132 KTGLIGTM-YRKIGDEVLPTKNTTPDIITLQRTLSKMVERGVSDVAMEVSSIALIQGRVW 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPNAT 118
+DFD+AVFTNLTRDH+D+H T E Y++AK+ LFS++ + + V+NIDDP
Sbjct: 191 GIDFDVAVFTNLTRDHLDYHKTMENYKHAKSLLFSQLGNRYAFNGDPKVAVLNIDDPVGK 250
Query: 119 SFIAQGNPDVPVVTFAMEN------KKADVHP--LKFELSLFETQVLVNTPHGILEISSG 170
F + V+T+ ++ +K VH FEL +F+ + ++ +
Sbjct: 251 QF--EQLTAAQVLTYGIKESAMISAQKIKVHSRGTDFELHVFDQ---------VYQLHTQ 299
Query: 171 LLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTP 230
++G N+YN+LAA A A G P EDI+ ++ V GR +LI IVDY+HTP
Sbjct: 300 MIGMFNVYNVLAAFAAAYASGLPAEDIIMALDGFKGVRGRMQLISSPTGVSAIVDYSHTP 359
Query: 231 DALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPL 290
D L + L ++ E+ + + VVGC G+ D GKRP M +IA + SD I TSDNP +EDP
Sbjct: 360 DGLYQALKTLDEVTKQHVFCVVGCGGDRDHGKRPKMGEIAAEHSDFPIFTSDNPRSEDPQ 419
Query: 291 DILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVV 350
I+ ML+GV P G ++ RR A+ A+ + GD+V++
Sbjct: 420 KIISAMLSGV-------------------PTGIKVPTFVDRRQAINYAIQQAQPGDLVLI 460
Query: 351 AGKGHETYQIEGDKKEFFDDREESREAL 378
AGKGHE YQI G +K FDD EE+ +AL
Sbjct: 461 AGKGHEDYQIIGKQKRHFDDVEEATKAL 488
>gi|254555978|ref|YP_003062395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
[Lactobacillus plantarum JDM1]
gi|254044905|gb|ACT61698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
[Lactobacillus plantarum JDM1]
Length = 493
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 210/387 (54%), Gaps = 45/387 (11%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ I D KL + TTPDA+ Q +A M G E V ME SS L LGR
Sbjct: 132 TGLIGTMYRKIK-DEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPNATS 119
+D+DIAVFTNLT+DH+DFH T +Y AKA LF+++ D V+N DDP
Sbjct: 191 IDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGRE 250
Query: 120 FIAQGNPDVPVVTFAM--------ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGL 171
F + V+TF + +N + H +F+LS+F + ++ L
Sbjct: 251 F--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFG---------HVTHVTMQL 299
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD 231
+G+ N+YN+LAA A A G P + I++ +E+V V GR + + VIVDY+HTPD
Sbjct: 300 IGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPD 359
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
L L+++++ A + I VVGC G+ D+ KRP M KIA + S I TSDNP EDP
Sbjct: 360 GLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTM 419
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL+DM+AGV PN D R VA+ A+ + GD+V++A
Sbjct: 420 ILNDMVAGV-------------------PNADVPVYED-RHVAIAKAIEAAQPGDVVLIA 459
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI G K FDD EE+ +AL
Sbjct: 460 GKGHEDYQIIGRTKHHFDDSEEAAKAL 486
>gi|308811498|ref|XP_003083057.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus
tauri]
gi|116054935|emb|CAL57012.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus
tauri]
Length = 657
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 221/399 (55%), Gaps = 22/399 (5%)
Query: 20 KLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDH 79
K E DA+ Q L A + NG A VME S+ + ++FDI T+
Sbjct: 244 KYEFEELGADALQFQQLTAGIADNGANAAVMEVSAEQVRRKATRGMNFDIVALTSFEGAR 303
Query: 80 MDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAME--N 137
+++G + EY + A +F + + E R V+NID+ +A + VPVVT++ + N
Sbjct: 304 KNYNGADSEYSSFVADVFKVLENAETQRGVINIDEEDA-DLCREYASGVPVVTYSTQIGN 362
Query: 138 KKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDI 197
ADV+P + + SLFET + ++TP G +E+ GL+G H I I A A+G+A L+ I
Sbjct: 363 TAADVYPARVDFSLFETAISLSTPAGNVEVVLGLVGEHMIGPICCATAIGLAAEISLDVI 422
Query: 198 VRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGE 257
G+E + +PGR EL+D Q F V+VD A+TP+ + R++ SVR RR+ITV+GC G+
Sbjct: 423 AAGLEACEVIPGRMELVDMGQDFSVLVDNANTPEGIERVIQSVRAANCRRVITVIGCEGD 482
Query: 258 --SDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDY 315
+RG+R ++ K+A D SDV +T+D+P EDP ILDD+ G + E K +
Sbjct: 483 MGDERGERAVIGKVAHDMSDVLFITNDSPKTEDPYKILDDICGGFRNEIYENDKIKDEAL 542
Query: 316 YPPLPNGHRL----------FLHDIRRV-------AVRCAVAMGEEGDMVVVAGKGHETY 358
+P L + + + + +RR A+R A+ M E D+V++ G+G + Y
Sbjct: 543 FPFLKDMYEVHENAQYECMRLQNLVRRYVMVDRFHAIRAAIGMAERDDVVLILGRGSKDY 602
Query: 359 QIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWR 397
+ G +K +FDD E+R+ALQ + + +G+DT PW+
Sbjct: 603 FVVGREKHWFDDVVEARDALQKIGAIQDSGVDTHNLPWQ 641
>gi|186682794|ref|YP_001865990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Nostoc punctiforme PCC 73102]
gi|186465246|gb|ACC81047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nostoc punctiforme PCC
73102]
Length = 500
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/356 (40%), Positives = 209/356 (58%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A+ ++ G+E VME SSH LA GR F++AVF+NLT+DH+D+H
Sbjct: 160 TTPFAVELQQQLAEAVNAGSEFGVMEVSSHALAQGRVLGCQFEVAVFSNLTQDHLDYHRD 219
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKA LFS D + R ++N DD IA + + V ++++ + AD+
Sbjct: 220 MEDYFAAKALLFSP--DYLKGRAIINADDSYGKRLIASLDSE-RVWSYSVNDNSADLWMS 276
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+++TP G + S L+G++N+ N+LAAV + +G L+ + I E
Sbjct: 277 DLSYEPNGVSGILHTPKGDVAFRSPLVGQYNLENLLAAVGAALHLGLDLQLVASVIPEFP 336
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I+ +Q VIVDYAHTPD+L LL + R P ++I V GC G+ DR KR
Sbjct: 337 GVPGRMERVQINSDQDISVIVDYAHTPDSLENLLKAARPFIPGKVICVFGCGGDRDRTKR 396
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P+M +IA + +DV ++TSDNP E+P IL+D+LAG+ T++
Sbjct: 397 PIMGRIAAELADVAVVTSDNPRTENPERILEDVLAGIAQTVKP----------------- 439
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+ + D R A+R A+ + GD V++AGKGHE YQI G +K FDDRE +R+ALQ
Sbjct: 440 -MVICD-RATAIRTAILQAQPGDGVLLAGKGHEDYQILGTEKIHFDDREHARDALQ 493
>gi|334127470|ref|ZP_08501382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Centipeda periodontii DSM 2778]
gi|333389424|gb|EGK60589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Centipeda periodontii DSM 2778]
Length = 494
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/385 (39%), Positives = 216/385 (56%), Gaps = 32/385 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ + D + TTPD +++Q L+A+M +AVVME SSH L GR
Sbjct: 131 GRRVGLIGTIQVMME-DEVFPTANTTPDVIVMQQLLAEMRTRKMDAVVMEVSSHALDQGR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
+ ++FD AVFTNLT+DH+D+H T E Y AKA+LF +V E + V+N DD A
Sbjct: 190 VAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFD-LVSAEGAKTGKTAVLNADD--A 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKA----DVHPLKFELSLFETQVLVNTPHGILEISSGLLG 173
S + + P++++ +E+ A DVH + + L VLV+ + + G+ G
Sbjct: 247 WSKAMRAHALCPIISYGVEHDAALMVHDVHLAQDGMEL----VLVHDGAELSRLHIGITG 302
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
N+YN+LAA +A DI + + VPGR EL+ Q F VIVDYAHTPD +
Sbjct: 303 LFNVYNVLAATGAALAEKVAAADIEAALMDFAGVPGRFELVRAGQDFSVIVDYAHTPDGM 362
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L + R + RII V GC G+ DR KRP+M ++A + +D+ +LTSDNP EDP IL
Sbjct: 363 ENVLRTARAVTAGRIIAVFGCGGDRDRTKRPIMGRMAAELADIVVLTSDNPRTEDPAAIL 422
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
D++ GV L + Y L + RR A+ AV ++GD VV+ GK
Sbjct: 423 DEVETGV-------LPVIGDKPYEKLVD---------RRTAIFHAVQRAQKGDTVVILGK 466
Query: 354 GHETYQIEGDKKEFFDDREESREAL 378
GHE YQI DK FDDRE +REA+
Sbjct: 467 GHENYQILKDKTIHFDDRETAREAI 491
>gi|219670078|ref|YP_002460513.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfitobacterium
hafniense DCB-2]
gi|219540338|gb|ACL22077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
hafniense DCB-2]
Length = 495
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/379 (39%), Positives = 203/379 (53%), Gaps = 24/379 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I G +L RTTP+A+ +Q L+ +M+ G + VME SSH L GR
Sbjct: 134 GKKVGLIGTLGARIAG-RELPGNRTTPEAIDLQKLLKEMVDEGVQLAVMEVSSHALVFGR 192
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD-PERHRKVVNIDDPNATSF 120
+ +FD +F+NLT+DH+D+H T EEY AKA+LFS + E VVN DDP A +
Sbjct: 193 VTGCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVVNGDDPAAETL 252
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I PVVT+ + D L+ + V ++ G ++YN
Sbjct: 253 IRLSA--APVVTYGVNADLLDYRAEDILLTADGVKFTVRFKGEAEQVEYSTPGMFSVYNA 310
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA A G+ G + + V VPGR E + Q F +IVDYAHTPD L + +
Sbjct: 311 LAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRMGQPFQIIVDYAHTPDGLENVCRTA 370
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
+E R+ITV GC G+ D+GKRP M IA + SD I+TSDNP EDP I+ D+L G+
Sbjct: 371 QEFTQGRLITVFGCGGDRDKGKRPQMGAIAEELSDHVIVTSDNPRTEDPRQIIRDILEGI 430
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
E + Y N RR A+ CA + +EGD V++AGKGHE YQI
Sbjct: 431 -----EGIDYTANVN---------------RREAIECACLLAKEGDTVLIAGKGHEDYQI 470
Query: 361 EGDKKEFFDDREESREALQ 379
G FDDRE +REAL+
Sbjct: 471 IGKDVFPFDDREVAREALR 489
>gi|442805607|ref|YP_007373756.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741457|gb|AGC69146.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 484
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 217/381 (56%), Gaps = 31/381 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ +V+ I G ++ + RTTP+++ +Q + + M G +AVVME SS GL L R
Sbjct: 129 GQTVGLIGTVANII-GSERIPAQRTTPESLDLQEMFSNMKEKGADAVVMEVSSQGLKLNR 187
Query: 62 CSEVDFDIAVFTNLTRDHM--DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
+ FD+ VFTNL+ DH+ + H E+Y +K KLFS R ++NID A
Sbjct: 188 VGAITFDVGVFTNLSEDHIGGNEHPDMEDYLKSKIKLFSM-----SKRGLINIDSEYAGR 242
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+A+ P +TF +ENK ADV+ + V TP + + GR +YN
Sbjct: 243 VLAESR--CPCMTFGIENK-ADVYAEDIVTHADSVEFTVKTPWFGGRVKVSVPGRFTVYN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEE-QAFGVIVDYAHTPDALSRLLD 238
LAA+ V +G E V G++ + +PGR E++ + + V++DYAHTPD+L +L
Sbjct: 300 ALAAIGVAGMLGMGFEHAVNGLKNIH-IPGRAEIVPTPGKPYTVMIDYAHTPDSLRNILS 358
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+V+E P R+I+V GC G+ DRGKRP M KI+ +D TI+TSDNP EDP+ I+ D+
Sbjct: 359 TVKEFVPNRLISVFGCGGDRDRGKRPQMGKISGKIADFTIITSDNPRTEDPMAIIRDIEE 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ T +G + + D R A+R A+++ +EGD++V+AGKGHETY
Sbjct: 419 GIKQT-----------------DGQYIIIED-RTEAIRYAMSIAKEGDIIVLAGKGHETY 460
Query: 359 QIEGDKKEFFDDREESREALQ 379
QI DK +D+RE +E L+
Sbjct: 461 QIFKDKTIHYDEREIVKEILE 481
>gi|423073811|ref|ZP_17062548.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfitobacterium hafniense DP7]
gi|361855433|gb|EHL07409.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfitobacterium hafniense DP7]
Length = 495
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/379 (39%), Positives = 203/379 (53%), Gaps = 24/379 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I G +L RTTP+A+ +Q L+ +M+ G + VME SSH L GR
Sbjct: 134 GKKVGLIGTLGARIAG-RELPGNRTTPEAIDLQKLLKEMVDEGVQLAVMEVSSHALVFGR 192
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD-PERHRKVVNIDDPNATSF 120
+ +FD +F+NLT+DH+D+H T EEY AKA+LFS + E VVN DDP A +
Sbjct: 193 VTGCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVVNGDDPAAETL 252
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I PVVT+ + D L+ + V ++ G ++YN
Sbjct: 253 IRLSA--APVVTYGVNADLLDYRAEDILLTADGVKFTVRFKGEAEQVEYSTPGMFSVYNA 310
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA A G+ G + + V VPGR E + Q F +IVDYAHTPD L + +
Sbjct: 311 LAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRMGQPFQIIVDYAHTPDGLENVCRTA 370
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
+E R+ITV GC G+ D+GKRP M IA + SD I+TSDNP EDP I+ D+L G+
Sbjct: 371 QEFTQGRLITVFGCGGDRDKGKRPQMGAIAEELSDHVIVTSDNPRTEDPRQIIRDILEGI 430
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
E + Y N RR A+ CA + +EGD V++AGKGHE YQI
Sbjct: 431 -----EGIDYTANVN---------------RREAIECACLLAKEGDTVLIAGKGHEDYQI 470
Query: 361 EGDKKEFFDDREESREALQ 379
G FDDRE +REAL+
Sbjct: 471 IGKDVFPFDDREVAREALR 489
>gi|261881134|ref|ZP_06007561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
17361]
gi|270332139|gb|EFA42925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
17361]
Length = 484
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 211/378 (55%), Gaps = 30/378 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG R G+LS+V YI D L + TTPDA+ + L+AKM+ G E V ME SSH +A
Sbjct: 129 MGHRCGLLSTVCNYIE-DEVLPADHTTPDAIELNELLAKMVDAGCEYVFMECSSHAIAQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F A+FTNLTRDH+D+HGT E YRNAK F + P+ + N DD N F
Sbjct: 188 RIGGLTFTGALFTNLTRDHLDYHGTFENYRNAKKMFFDDL--PKSAFAITNADDKNGM-F 244
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ Q N + T++ME + AD E+ + V+ ++ +G+ N+ N+
Sbjct: 245 MVQ-NTKATIKTYSME-RMADFRARIIEMHFAGMYLNVDGN----DVGVQFIGKFNVSNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +G EDI+ + + +V GR E I + IVDYAHTPDAL+ +L+++
Sbjct: 299 LAVYGAARMLGKQPEDILVTLSTLHSVSGRLEPIQSSEGVTAIVDYAHTPDALANVLNAI 358
Query: 241 REL-APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
RE+ +IITV G G D+GKRPLM + A +SD I+TSDNP E+P DI+DDMLAG
Sbjct: 359 REVDKTGQIITVCGAGGNRDKGKRPLMAQEAVKQSDRVIITSDNPRFEEPQDIIDDMLAG 418
Query: 300 VG-WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
+ M++ + + RR A++ A + ++GD+V+VAGKGHE Y
Sbjct: 419 LNTQQMKKVVSIAD------------------RREAIKTACMLAKKGDVVLVAGKGHENY 460
Query: 359 QIEGDKKEFFDDREESRE 376
Q K FDDRE RE
Sbjct: 461 QEIKGVKHHFDDREVIRE 478
>gi|296327807|ref|ZP_06870345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
[Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
gi|296155063|gb|EFG95842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
[Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
Length = 485
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/373 (38%), Positives = 213/373 (57%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y I GD E+ TTP+++ + + K L E V+ME SSH L +GR +DF
Sbjct: 131 IGTIEYKI-GDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLEIGRVEVLDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D + V+N+DD + D
Sbjct: 190 DYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDI--NNSVINVDDEYGKRLYDEFIVD 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ +EN L+ + S + + V + I ++ LLG N+YN L A+ +
Sbjct: 248 NPEIISYGIEN-----GDLEGDYSD-DGYIDVKYKNQIEKVKFLLLGDFNLYNTLGAIGI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G +E+I++ + + A PGR E +D Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 ALKIGISMEEILKRVSNIKAAPGRFEALDCGQDYKVIVDYAHTPDALVNVIVAARNIKNG 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K+A D SDV ILTSDNP E P I DD+ G
Sbjct: 362 SRIITIFGCGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
++K +DY F R A++ A+ M E+ D++++ GKGHETY I G KK
Sbjct: 416 -FIK--SDDY----------FFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|158320407|ref|YP_001512914.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Alkaliphilus oremlandii OhILAs]
gi|167017292|sp|A8MH31.1|MURE_ALKOO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|158140606|gb|ABW18918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
OhILAs]
Length = 487
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 219/376 (58%), Gaps = 27/376 (7%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
+ G++ ++S +I G+ ++E+ RTTP+++ +Q ++ +M+ + VME SSH L LGR
Sbjct: 129 INVGLIGTISNWI-GNKEIEAVRTTPESLELQKILNEMVEQKVDTCVMEVSSHALELGRV 187
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122
F + +FTNLT +H+DFH + YRNAK KLF + ++N+DD + IA
Sbjct: 188 DHTKFTMGIFTNLTPEHLDFHEDMDHYRNAKKKLFYKTTLC----NIINVDDIHG-KMIA 242
Query: 123 Q--GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ +P++TF M N++ADV+ +++L ++ E + G +YN
Sbjct: 243 EELKEEQIPLITFGM-NQQADVYATDLKINLKGVSFQLHMGQDSKEFHVKIPGLFTVYNA 301
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
+ ++ + +G LE+I +E + VPGR E+++E Q VI+DYAHTPDAL +L S
Sbjct: 302 MPSILICYILGLSLEEISIALEAMKGVPGRFEVVEEIQRNSVIIDYAHTPDALENILIST 361
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R+ AP+RIITV GC G+ D+ KR +M +I+ SD +I+TSDNP E+PL I++ + G+
Sbjct: 362 RKFAPKRIITVFGCGGDRDKTKRRIMGEISGKYSDYSIITSDNPRTEEPLKIIEMIEDGI 421
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+Y ++ + RR A+ A+ + EE D++++AGKGHE Q+
Sbjct: 422 KQVTDQY----------------KIMID--RRCAIEYAMKIAEEKDIIILAGKGHEKTQV 463
Query: 361 EGDKKEFFDDREESRE 376
G++ +FDDRE + E
Sbjct: 464 IGNEVFYFDDREVALE 479
>gi|443323279|ref|ZP_21052287.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gloeocapsa sp. PCC
73106]
gi|442787017|gb|ELR96742.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gloeocapsa sp. PCC
73106]
Length = 500
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/378 (38%), Positives = 211/378 (55%), Gaps = 25/378 (6%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
L T +L ++ Y + ++ + TTP AV +Q+ +A L G + VME SSH LA GR
Sbjct: 137 LPTVLLGTL-YTRWANYQVTAVHTTPFAVELQSQLATALQAGNQWGVMEVSSHALAQGRV 195
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122
F +AVFTNLT+DH+DFH E+Y AK+ LF+ D + + ++N DD I+
Sbjct: 196 KNCGFAVAVFTNLTQDHLDFHRDMEDYFQAKSLLFTP--DYLQGKAIINQDDAYGQRIIS 253
Query: 123 QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILA 182
P V ++++ ++KAD S + ++TP G+ +S L+G+ N+ N+L
Sbjct: 254 T-LPRDQVWSYSVFDQKADFWTSDLVYSSNGVRGQLHTPVGVTSFASPLVGQFNLANLLG 312
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELID--EEQAFGVIVDYAHTPDALSRLLDSV 240
A+A +AVG LE+++ + VPGR E + EQ VIVDYAHTPD+L LL +
Sbjct: 313 AIATALAVGLSLEEVIAHLPHFTGVPGRMERVQVTPEQEITVIVDYAHTPDSLENLLTAA 372
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R ++I VVGC G+ DR KRPLM KI +D+ ++TSDNP EDP I+ D+LAG+
Sbjct: 373 RPFITGKMICVVGCGGDRDRTKRPLMGKIVAQLADIAVITSDNPRTEDPEAIIQDILAGI 432
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
P G + R A+ A+ + GD V++AGKGHE YQI
Sbjct: 433 -------------------PQGVVPLVISDRAEAIATAITTAQPGDGVLIAGKGHEDYQI 473
Query: 361 EGDKKEFFDDREESREAL 378
G +K FDDRE++RE L
Sbjct: 474 LGTEKIHFDDREQAREVL 491
>gi|218441130|ref|YP_002379459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cyanothece sp. PCC 7424]
gi|218173858|gb|ACK72591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7424]
Length = 496
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 144/355 (40%), Positives = 204/355 (57%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +A+ + G+E VME SSH LA R + F++AVFTNLT+DH+DFH
Sbjct: 159 TTPFATELQEQLAQAVKAGSEYAVMEVSSHALAQRRVAGCPFEVAVFTNLTQDHLDFHKD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y NAKA LFS D R ++N+DDP I + + V ++++ N A+ +
Sbjct: 219 MEDYFNAKALLFSP--DYLTGRAIINLDDPYGQRLINSLSGE-KVWSYSVNNPDANFYTK 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+++TP G + S L+G++NI N+LAAV + +G L+ IV +
Sbjct: 276 DLTYEANGVSGILHTPIGEVNFYSPLVGQYNIANLLAAVGAVVHLGVDLKSIVESLPLFS 335
Query: 206 AVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
AVPGR E I ++Q VIVDYAHTPD+L LL + R ++I V GC G+ DR KR
Sbjct: 336 AVPGRMERVKISDKQDISVIVDYAHTPDSLENLLKAARPFIEGKMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA + +D+ ++TSDNP E+P IL+D+LAG+ P
Sbjct: 396 PKMGKIAAELADLAVVTSDNPRTENPEQILEDILAGI-------------------PQSV 436
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++REAL
Sbjct: 437 KPVVISDRAEAIRTAIMDAKPGDGVLIAGKGHEDYQILGTEKIHFDDREQAREAL 491
>gi|37523061|ref|NP_926438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Gloeobacter violaceus PCC 7421]
gi|46576919|sp|Q7NFN2.1|MURE_GLOVI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|35214064|dbj|BAC91433.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Gloeobacter violaceus PCC 7421]
Length = 489
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 211/377 (55%), Gaps = 31/377 (8%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ G ++ E+ TTP A+ +Q L+A+M+ G + VME SSH LA R +
Sbjct: 134 TGLVGTLYSRWPGQSQ-EARHTTPFALEIQKLLAQMVEAGCQYGVMEVSSHALAQQRVAG 192
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH--RKVVNIDDPNATSFIA 122
F+ AVFTNLT+DH+DFH E Y AKA LFS PE R V+N DDP A
Sbjct: 193 CRFEAAVFTNLTQDHLDFHPDMESYFQAKATLFS----PEYRSGRAVINADDPWGVRLAA 248
Query: 123 QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILA 182
+ V T++ + AD++P + + + TP G +S L+G+ N+ N+LA
Sbjct: 249 AYDQ---VWTYSFQ-PGADIYPEDAVFTPEGIRGTLVTPVGRAAFTSPLVGQFNLANLLA 304
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELID-EEQAFGVIVDYAHTPDALSRLLDSVR 241
AV +A+G LE I G+ VPGR E + + VIVDYAHTPD L +LL++ R
Sbjct: 305 AVGATLALGIDLEAIAAGLSGFGGVPGRMERVSGSDDDIAVIVDYAHTPDGLRKLLEATR 364
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
R+I V GC G+ DR KRP M +IA + SD+ ++TSDNP E+P ILDD+LAG+
Sbjct: 365 PFVRGRLICVFGCGGDRDRTKRPQMGRIAAELSDLPVVTSDNPRTENPEAILDDILAGI- 423
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
P G + RR A+ A+ + GD VV+AGKGHE YQI
Sbjct: 424 ------------------PVGVSPTVEVDRRRAILQALLEAKAGDCVVIAGKGHEDYQIL 465
Query: 362 GDKKEFFDDREESREAL 378
G K FDDRE++REAL
Sbjct: 466 GTTKIHFDDREQAREAL 482
>gi|22298782|ref|NP_682029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermosynechococcus elongatus BP-1]
gi|30316018|sp|Q8DJI4.1|MURE_THEEB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|22294963|dbj|BAC08791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Thermosynechococcus elongatus BP-1]
Length = 497
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 152/381 (39%), Positives = 209/381 (54%), Gaps = 26/381 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G T +L ++ G ++ S TTP AV +Q +A + G VME SSH LA
Sbjct: 131 VGYPTALLGTLYSRWPGHCEVAS-HTTPFAVTLQEQLAAAVDAGCRFGVMEVSSHALAQD 189
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R F++A FTNLT+DH+D+H E+Y AKAKLF+ D + R ++N DDP
Sbjct: 190 RVWGCQFEVAAFTNLTQDHLDYHRDLEDYFAAKAKLFT--ADYLKGRAILNGDDPFGQR- 246
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+AQ P T+ + +K AD V+TP G + S L+G+ N+ N+
Sbjct: 247 LAQQLPRDRYWTYGL-SKDADFRAENLNYRSNGVTGAVHTPLGSGTLDSPLVGQFNVANV 305
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI--DEEQAFGVIVDYAHTPDALSRLLD 238
LAA+A+G AVG PLE ++ + + VPGR E + D EQ V+VDYAHTPD+L LL
Sbjct: 306 LAAIAMGAAVGLPLEAMLNALRDFPGVPGRMEQVRLDPEQDITVVVDYAHTPDSLENLLR 365
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ R P ++I V GC G+ DR KRP M IA +D ++TSDNP E+P ILDD+LA
Sbjct: 366 AARPFIPGKLICVFGCGGDRDRSKRPQMGAIAARLADQVVVTSDNPRTENPQRILDDILA 425
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ P + + RR A+ A+ GD V++AGKGHE Y
Sbjct: 426 GI-------------------PPETAMIVEGDRRQAILQAILTAAPGDGVIIAGKGHEDY 466
Query: 359 QIEGDKKEFFDDREESREALQ 379
QI G +K FDDREE+R AL+
Sbjct: 467 QILGTEKVHFDDREEARNALK 487
>gi|308271435|emb|CBX28043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [uncultured Desulfobacterium sp.]
Length = 537
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 213/389 (54%), Gaps = 21/389 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ G SP TTP+++ +Q ++++M+ +G VVME SSH + L R
Sbjct: 157 GFKTGVIGTINCRYSGKT-FPSPVTTPESLDLQKILSEMVIDGVTHVVMEVSSHAIDLFR 215
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV----DPERHRKVVNIDDPNA 117
FD AVFTNLT+DH+D+H E Y K KLF+ + E+ V+N DD
Sbjct: 216 IEGCFFDSAVFTNLTQDHLDYHKNMESYWAVKKKLFTESLAAGPKKEKAFTVINCDDERG 275
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ G + +++ D++ + + L++TP I S L+G+HNI
Sbjct: 276 KAL--SGILSTKCIKTGSDSE-CDIYASNSRIDTLGIKALISTPESTFSIESELVGKHNI 332
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
NI++A V +G E I +GI+ + +PGR E I+ E V VDYAHTPDAL +L
Sbjct: 333 ENIMSAAGVASGLGISSEIIKKGIKSLSVIPGRLEKINNEAGISVYVDYAHTPDALKNVL 392
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
S+R + R+I V GC G+ D+ KRPLM ++A D SD ++TSDNP EDP +I++ ++
Sbjct: 393 LSLRPIVKGRLICVFGCGGDRDKTKRPLMGELAGDLSDFAVITSDNPRTEDPTEIINQII 452
Query: 298 AGVGWTMQEYLKYGENDYYPP-----LPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
G+ K + D Y P + + R+ A+ + + + GD+V++AG
Sbjct: 453 TGI--------KRNKIDRYEPTAPSLFSDKKGYVVEPDRKKAIHLGINIAKAGDVVLIAG 504
Query: 353 KGHETYQIEGDKKEFFDDREESREALQYV 381
KGHETYQ+ G FDDR E+ AL +
Sbjct: 505 KGHETYQLIGKDSFPFDDRLEAGFALSQI 533
>gi|428310139|ref|YP_007121116.1| UDP-N-acetylmuramyl tripeptide synthetase [Microcoleus sp. PCC
7113]
gi|428251751|gb|AFZ17710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Microcoleus sp. PCC
7113]
Length = 500
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 196/355 (55%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP V +Q + L G + VME SSH LA GR F++ VFTNLT+DH+DFH
Sbjct: 163 TTPFPVELQQQLKSALEAGCQLGVMEVSSHALAQGRVLGCSFEVGVFTNLTQDHLDFHRD 222
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKA LF+ + + R ++NIDDP + Q P+ V ++++ + AD+
Sbjct: 223 MEDYFAAKALLFN--ANYLKGRAIINIDDPYGKRLVEQLQPE-QVWSYSVHDPSADLWTS 279
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+++TP G S L+G++N+ N LAAV + VG LE +V + +
Sbjct: 280 DLNYESTGVSGILHTPAGEAPFRSPLVGQYNLSNWLAAVGAVLQVGLKLETVVEALPQFM 339
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I EQ VIVDYAHTPD+L LL + R ++I V GC G+ DR KR
Sbjct: 340 GVPGRMERVQIKPEQDVSVIVDYAHTPDSLENLLKASRPFIQGKMICVFGCGGDRDRTKR 399
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA + +DV ++TSDNP EDP IL D+L G+ P+
Sbjct: 400 PKMGKIAAELADVAVVTSDNPRTEDPERILQDILEGI-------------------PSSV 440
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++REAL
Sbjct: 441 TPIVQGDRATAIRTAILQAQPGDGVLIAGKGHEDYQILGTEKIHFDDREQAREAL 495
>gi|182417965|ref|ZP_02949274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium butyricum 5521]
gi|237667171|ref|ZP_04527155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium butyricum E4 str. BoNT E BL5262]
gi|182378136|gb|EDT75671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium butyricum 5521]
gi|237655519|gb|EEP53075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium butyricum E4 str. BoNT E BL5262]
Length = 486
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 146/394 (37%), Positives = 215/394 (54%), Gaps = 59/394 (14%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ YI G+ K+ + RTTP+++ +Q L +M+ G E VME SSH LAL R
Sbjct: 130 GKKVGLIGTIANYICGE-KIHTERTTPESLELQELFGEMVEKGVEYCVMEVSSHSLALDR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDD------- 114
V F+ +FTNLTRDH+DFH T E Y +AK KLF R KV+N+DD
Sbjct: 189 VYGVKFECGIFTNLTRDHLDFHKTFENYYDAKFKLFERSC-----IKVINVDDNYGIQVL 243
Query: 115 --------PNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILE 166
N SF + + D M ++ +KF++ L E + E
Sbjct: 244 KDCQKLNAENIYSFSVKSDSDYKAYDELMGSR-----DIKFKVVLDEEE----------E 288
Query: 167 ISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIV 224
G+ G +NIYN L A+ V +G +E I GIE VPGRCE + +E + +I+
Sbjct: 289 FILGIPGEYNIYNALGAIGVCHKMGIAIEAIKEGIENA-LVPGRCERVGKEYNLPYEIII 347
Query: 225 DYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNP 284
DYAHTPD L +L + + ++I + GC G+ D+ KRP M KI D +D+ ++TSDNP
Sbjct: 348 DYAHTPDGLENILKTAKAFTKGKLIAIFGCGGDRDKVKRPQMGKIGIDIADLAVITSDNP 407
Query: 285 MNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEE 344
+EDP+ I++D+ AG+ + D Y + N H A++ A+ + E+
Sbjct: 408 RSEDPMAIIEDIKAGL-----------DKDNYIIIENRHD---------AIKKAIELAEK 447
Query: 345 GDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
D++V+AGKGHETYQI DK FD+RE +E L
Sbjct: 448 DDVIVIAGKGHETYQILKDKTIHFDEREVVKEIL 481
>gi|47568717|ref|ZP_00239413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus G9241]
gi|47554611|gb|EAL12966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus G9241]
Length = 499
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 144/382 (37%), Positives = 214/382 (56%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ + + G + T + +Q + M + + VME +S GL + R
Sbjct: 137 GYHTGLMGNNGVKV-GSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMER 195
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRKVVNIDDPNA 117
+F IAVFTNLT+DH+D+HGT +EY++ K+ LF+R+ + ++ V+N DDP+
Sbjct: 196 VKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSV 255
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + V+T+ + N ADV LS + LV++ +G +E+S L+GR N+
Sbjct: 256 EYF--KKITSAEVITYGIHNG-ADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNV 312
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ V + G PL +I + + ++ GR E+IDE Q F VIVDYAHTPDAL +L
Sbjct: 313 YNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDENQDFLVIVDYAHTPDALENVL 372
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E A +IITV GC G+ D KR +M IA SD +TSDNP +EDP I+ D+
Sbjct: 373 STISEFAKGKIITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIE 432
Query: 298 AGVGWTMQEYLKYG-ENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
G++ L Y E D R +A+ A+ M D+V++AGKGHE
Sbjct: 433 K--GFSQNNNLNYKVEVD----------------RELAINHAINMASSNDIVLIAGKGHE 474
Query: 357 TYQIEGDKKEFFDDREESREAL 378
TYQI D FDD+E++R+A+
Sbjct: 475 TYQILKDSTIHFDDKEKARQAI 496
>gi|424827301|ref|ZP_18252110.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium sporogenes PA 3679]
gi|365980224|gb|EHN16260.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium sporogenes PA 3679]
Length = 483
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 149/392 (38%), Positives = 217/392 (55%), Gaps = 55/392 (14%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+L +++ YI G+ K+ES RTTP+++ +Q L M+ + VME SSH L L R
Sbjct: 131 GYKVGLLGTIANYI-GNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V+F A+FTNLT+DH+DFH T E Y N+K LF V+NIDD +
Sbjct: 190 VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA-----ENSVINIDDSYGEKVL 244
Query: 122 --AQGNPDVPVVTFAMENK---KAD---VHPLKFEL-SLFETQ---VLVNTPHGILEISS 169
A GN +T+ +E KA+ +H E ++F+ + + +N P
Sbjct: 245 KKALGNK----ITYGVEKNCDLKAENLYMHSRGVEFDTIFKNEKETIALNIP-------- 292
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYA 227
G++NIYN L ++ + G L+ I +E++ +VPGRCE++ + G VIVDYA
Sbjct: 293 ---GKYNIYNALGSIGACLLEGISLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYA 349
Query: 228 HTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNE 287
HTPD L +L + RE R+I+V GC G+ DR KRP+M K+ +D SD+ I+TSDNP E
Sbjct: 350 HTPDGLENILSTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSDLSDIAIITSDNPRTE 409
Query: 288 DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347
DP I+ D+L G+ E D Y + RR A++ A+ + +E D+
Sbjct: 410 DPSLIIKDVLEGI-----------EKDNYIVVEG---------RRDAIKKAMEIAKENDV 449
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+VVAGKGHE YQI DK FD+RE E ++
Sbjct: 450 IVVAGKGHEDYQILKDKTIHFDEREVIEELIK 481
>gi|228933885|ref|ZP_04096729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228825761|gb|EEM71550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
Length = 492
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/350 (38%), Positives = 202/350 (57%), Gaps = 24/350 (6%)
Query: 33 VQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNA 92
+Q + M + + VME +S GL + R +F IAVFTNLT+DH+D+HGT EY++
Sbjct: 160 LQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTKDHLDYHGTFHEYKHV 219
Query: 93 KAKLFSRMVD----PERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFE 148
K LFSR+ + ++ V+N DDP+ F + V+T+ + N+ ADV
Sbjct: 220 KGLLFSRLGNDLSTTDKKIAVLNADDPSVEYF--KKITSAEVITYGIHNR-ADVQAKNIT 276
Query: 149 LSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVP 208
LS + LV++ +G +E+S L+GR N+YN LAA+ V + G PL +I + + ++
Sbjct: 277 LSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIE 336
Query: 209 GRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTK 268
GR E+IDE Q F VIVDYAHTPDAL +L ++ E + ++ITV GC G+ D KR +M
Sbjct: 337 GRMEIIDENQDFLVIVDYAHTPDALENVLSTISEFSTGKVITVFGCGGDRDTKKRSIMGG 396
Query: 269 IATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLH 328
IA SD +TSDNP +EDP I+ D+ G +L+ +Y +
Sbjct: 397 IAGSYSDFVFITSDNPRSEDPQAIMKDIEKG-------FLQNNNLNYKVEVD-------- 441
Query: 329 DIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
R +A+ A+ M D+V++AGKGHETYQI +FDD+E++R+A+
Sbjct: 442 --RELAITHAINMASSNDIVLIAGKGHETYQILKGSTIYFDDKEKARQAI 489
>gi|428214033|ref|YP_007087177.1| UDP-N-acetylmuramyl tripeptide synthetase [Oscillatoria acuminata
PCC 6304]
gi|428002414|gb|AFY83257.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillatoria acuminata
PCC 6304]
Length = 497
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 145/355 (40%), Positives = 201/355 (56%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV + + ++ + G E VME SSH LA GR + F + +FTNLT+DH+DFH T
Sbjct: 157 TTPFAVDLNHQLSDAVQAGCEFGVMEVSSHSLAQGRVQGLPFQVGIFTNLTQDHLDFHAT 216
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKAKLFS + + VVNIDD + + D + ++ N +AD+
Sbjct: 217 MEDYFEAKAKLFS--AEYLQGCAVVNIDDSYGQRLAERLSGD-KLWGYSTHNSQADLWTS 273
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
E + +++TP G + S L+G++N+ N+LAAV + G PL +IV + E
Sbjct: 274 DIEYEPAGVKGMLHTPVGNAKFSLPLVGQYNVENMLAAVGAALHFGIPLAEIVAVLPEFP 333
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E LI +Q IVDYAHTPD+L +L + R ++I V GC G+ DR KR
Sbjct: 334 GVPGRMEQVLIKPDQDISAIVDYAHTPDSLENVLKATRPFISGKLICVFGCGGDRDRTKR 393
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P+M KIA + +DV ++TSDNP EDP IL D+ AG+ P
Sbjct: 394 PIMGKIAAELADVVVVTSDNPRTEDPEQILKDVAAGI-------------------PQSI 434
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ R +A+R A+ + GD VV+AGKGHE YQI G +K FDDRE++REAL
Sbjct: 435 SARVIGDRAIAIRTAILEAKPGDGVVIAGKGHEDYQILGTEKIHFDDREQAREAL 489
>gi|427724129|ref|YP_007071406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Leptolyngbya sp. PCC 7376]
gi|427355849|gb|AFY38572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Leptolyngbya sp. PCC 7376]
Length = 497
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 145/376 (38%), Positives = 208/376 (55%), Gaps = 26/376 (6%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
T ++ ++ G K+ + TTP A+ +Q AK + VME SSH L R
Sbjct: 139 TALIGTLYTRWQGYEKIAT-HTTPFAIDLQKNFAKAVKAENTHGVMEVSSHALDQKRVKG 197
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
+FD++VFTNLT+DH+D+H T EEY AKA LF+ + + R VVN+DD +
Sbjct: 198 CEFDVSVFTNLTQDHLDYHKTMEEYFQAKALLFND--EYCKERAVVNLDDQYGARLAHKL 255
Query: 125 NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAV 184
+++++K A + + E + + TP G + SS L+G+ N+ N++AA+
Sbjct: 256 GEKC--WGYSLQDKSAAIFMDRLEYTAIGVTGRLTTPEGTAQFSSPLVGQFNLENVMAAI 313
Query: 185 AVGIAVGAPLEDIVRGIEEVDAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRE 242
G+A+G LE ++ + E VPGR E + +EQ VIVDYAHTPD+L LL + R
Sbjct: 314 GAGLALGLDLEQMLTVLPEFTGVPGRMERVQVSDEQDISVIVDYAHTPDSLENLLKASRP 373
Query: 243 LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGW 302
PR++I V GC G+ DR KRPLM KIA KSD ++TSDNP EDP IL D++ G+
Sbjct: 374 FIPRKMICVFGCGGDRDRTKRPLMGKIAATKSDWAVVTSDNPRTEDPKRILVDVVEGI-- 431
Query: 303 TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEG 362
P + + R A+ A+ + GD V++AGKGHE YQI G
Sbjct: 432 -----------------PEAIQFLVIPDRAAAIHQAILEAKPGDGVLIAGKGHEDYQILG 474
Query: 363 DKKEFFDDREESREAL 378
+K FDDREE+R+AL
Sbjct: 475 TEKVHFDDREEARKAL 490
>gi|403069281|ref|ZP_10910613.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Oceanobacillus sp. Ndiop]
Length = 494
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 146/380 (38%), Positives = 213/380 (56%), Gaps = 26/380 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I G++ P TTPDA+ +Q L KM + + +ME SSH L GR
Sbjct: 132 KTGIIGTIQTKI-GEDSYPVPNTTPDALHLQRLFHKMRNENVDQAIMEVSSHSLDQGRVY 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM----VDPERHRKVVNIDDPNATS 119
++DIA+FTNL++DH+D+H ++Y AK+ LFS++ + V+N DDP A
Sbjct: 191 GCEYDIAIFTNLSQDHLDYHADLQDYLRAKSLLFSQLGNGYTSESKKYAVINEDDP-ACD 249
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ ++T+ + KKA V + +L T + +P G+++ISS L+G N+YN
Sbjct: 250 LLKHSTAQY-ILTYGCK-KKAAVMAVDIKLEASGTSFKLKSPVGVVDISSRLIGMFNVYN 307
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA IA PL I +E + V GR E + E Q + VIVDYAHTPD+L +L +
Sbjct: 308 MLAAATAAIASQIPLSVIKSALESIRGVNGRFEPVAEGQDYAVIVDYAHTPDSLENVLQT 367
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+E A ++ VVGC G+ DR KRPLM IA +D I TSDNP ED ILDDM G
Sbjct: 368 SKEFAKEKVYVVVGCGGDRDRTKRPLMASIALKYADHAIFTSDNPRTEDSKSILDDMTDG 427
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ + +G + D R+ A+ A+ E+ D++++AGKGHETYQ
Sbjct: 428 LSAS-----------------DGSFEVISD-RKQAITKAIDYAEKDDIILIAGKGHETYQ 469
Query: 360 IEGDKKEFFDDREESREALQ 379
I G K FDDRE +R A+
Sbjct: 470 IIGHTKYDFDDREVARTAIH 489
>gi|193214544|ref|YP_001995743.1| UDP-N-acetylmuramyl tripeptide synthetase [Chloroherpeton
thalassium ATCC 35110]
gi|193088021|gb|ACF13296.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton
thalassium ATCC 35110]
Length = 501
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 205/378 (54%), Gaps = 30/378 (7%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
++TG++ + Y I G+ E RTTPDA+ + L KML G AVVME SSH LAL R
Sbjct: 133 IKTGLIGTTGYII-GNQLYELDRTTPDALELHQLFHKMLEAGCRAVVMEVSSHALALKRT 191
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122
+ + FDIAVFTNLT DH+DFHG+ Y +AK LF + E V+N DD A +
Sbjct: 192 AGIRFDIAVFTNLTHDHLDFHGSMTAYADAKKLLFDNL--SESAFAVINADDDYAEKMVK 249
Query: 123 QGNPDVPVVTFA------MENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
++ +EN DV F ++ T ++ + LG+ N
Sbjct: 250 DCKANIVRCGVINAREKELENPIIDVMAKVFSYTINGTSAIIADDKNSMMHQFRTLGKFN 309
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN + A A G+A G I+RG+ + V GR + + + IVDY+HTPDAL
Sbjct: 310 MYNTVEAYAAGLAFGFDRIHIIRGLMKCPPVRGRMQQVWSKDHRCAIVDYSHTPDALENA 369
Query: 237 LDSVRELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
L ++ + P RIIT+ GC G+ D+ KRPLM KIA D SD+ I+TSDNP +EDP ILD
Sbjct: 370 LQTICLVKPENGRIITLFGCGGDRDKEKRPLMGKIAEDNSDIIIITSDNPRSEDPEKILD 429
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
D+ AG+ + +N++Y + R A+R A+ + GD+ ++AGKG
Sbjct: 430 DIQAGI---------HKQNNFYRIVD----------RETAIRKAITLLTRGDVALIAGKG 470
Query: 355 HETYQIEGDKKEFFDDRE 372
HETYQ KK FDD+E
Sbjct: 471 HETYQEIAGKKFHFDDKE 488
>gi|255527763|ref|ZP_05394616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
carboxidivorans P7]
gi|296186675|ref|ZP_06855077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
carboxidivorans P7]
gi|296187064|ref|ZP_06855463.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
carboxidivorans P7]
gi|255508550|gb|EET84937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
carboxidivorans P7]
gi|296048351|gb|EFG87786.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
carboxidivorans P7]
gi|296048712|gb|EFG88144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
carboxidivorans P7]
Length = 483
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 143/380 (37%), Positives = 210/380 (55%), Gaps = 31/380 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+L +++ Y+ GD K+ + RTTP+++ +Q L A+M+ G +ME SSH L L R
Sbjct: 129 GYKVGLLGTIANYV-GDKKIPAHRTTPESLELQKLFAEMVEEGVNYCIMEVSSHSLYLDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V F A+FTNLTRDH+DFH T E Y NAK LF + VVNIDD
Sbjct: 188 VYGVKFCQAIFTNLTRDHLDFHKTFENYYNAKLILFKNTLSS-----VVNIDDEYGERVY 242
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ + ++A++ K ADV + + + + I+ + G++N+ N L
Sbjct: 243 E--DSEGKKTSYAID-KVADVKGSNLHMHSRGVEFDITYKNETQHINLNIPGKYNVMNAL 299
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYAHTPDALSRLLDS 239
+ A + G L + G+E + VPGRCE++ + G VIVDYAHTPD L +L +
Sbjct: 300 GSAAACLGEGMSLATVKEGLEAMLCVPGRCEIVTKNYDLGYEVIVDYAHTPDGLENILKT 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
RE ++I+V GC G+ D KRP+M KI T+ SD ++TSDNP EDP+ I+ +++AG
Sbjct: 360 AREFTKGKLISVFGCGGDRDNTKRPIMGKIGTELSDKAVITSDNPRTEDPMSIIKEVVAG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V E D Y + N RR A++ A+ M ++ D++VVAGKGHE YQ
Sbjct: 420 V-----------EKDNYIVVEN---------RREAIKKAMEMAKKDDVIVVAGKGHEDYQ 459
Query: 360 IEGDKKEFFDDREESREALQ 379
I DK FD+RE E ++
Sbjct: 460 ILKDKTIHFDEREVIAEIIK 479
>gi|308069885|ref|YP_003871490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus polymyxa E681]
gi|305859164|gb|ADM70952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus polymyxa E681]
Length = 495
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 154/384 (40%), Positives = 211/384 (54%), Gaps = 25/384 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ TG++ ++ +G TTP+AV +Q + M G + VME SSH L GR
Sbjct: 127 GVNTGLIGTIQMR-YGGQSYPMSGTTPEAVELQRYLGNMAEQGVQCCVMEVSSHALEQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD------PERHRKVVNIDDP 115
DF A+FTNLT+DH+D+H T EEYR AK LFSR+ + + V+N DDP
Sbjct: 186 VKGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDASDSKYAVLNADDP 245
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
A+S++ Q V+T+ +E K++DV + T V+T G +I ++G+
Sbjct: 246 -ASSYL-QAQTAAQVITYGVE-KESDVQASSITIGSKGTSFHVSTFKGDTDIELRMVGKF 302
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAA+ + G L DI R +E + V GR E +D Q F VIVDYAHTPD L
Sbjct: 303 NVYNALAAITAALLEGISLVDIKRSLESIAGVDGRVEPVDAGQPFAVIVDYAHTPDGLEN 362
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +V+E A ++ V GC G+ DR KRPLM KIA SD + +TSDNP EDP IL D
Sbjct: 363 VLRTVKEFAVGKVWCVFGCGGDRDRTKRPLMGKIAARYSDHSFITSDNPRTEDPKVILKD 422
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
++ G D P R L RR A+ AV M D+V++AGKGH
Sbjct: 423 ------------IEQGLIDEGVP---AERYELIVDRRTAIHKAVEMASPDDVVLIAGKGH 467
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQ+ G FDDR ++EA++
Sbjct: 468 ETYQLIGKTVHEFDDRIVAKEAIR 491
>gi|115372748|ref|ZP_01460054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Stigmatella aurantiaca DW4/3-1]
gi|310823493|ref|YP_003955851.1| UDP-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate ligase
[Stigmatella aurantiaca DW4/3-1]
gi|115370229|gb|EAU69158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Stigmatella aurantiaca DW4/3-1]
gi|309396565|gb|ADO74024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Stigmatella aurantiaca DW4/3-1]
Length = 507
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 144/378 (38%), Positives = 207/378 (54%), Gaps = 12/378 (3%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ Y ++G +E+ TTPD + + + +M+ G E VVME SSH L R
Sbjct: 132 TGVIGTLGYKVNG-KVVETANTTPDPLELHRIFREMVDAGVETVVMEVSSHALVQERVHG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
+ F A FTNLTRDH+D+H EEY AK +LF + VVN DD A+ +
Sbjct: 191 LTFKAAAFTNLTRDHLDYHKDIEEYFQAKRRLFGENLSAT-GVAVVNGDDTYASRIYNEL 249
Query: 125 NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAV 184
+ ++ SL + + TP G + + S L+G HN+ NILAA
Sbjct: 250 RGQKRMAWKFSRQGAGEISAADVSFSLQGIKATLKTPAGDIPVKSRLVGPHNLENILAAT 309
Query: 185 AVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQ---AFGVIVDYAHTPDALSRLLDSVR 241
V + G D+ GIE + +PGR E ++ A V+VDYAHT DAL R L++ R
Sbjct: 310 GVALGAGIARRDVQTGIERMGGLPGRMERVENYMPGPAPAVLVDYAHTDDALKRALEASR 369
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
LA R+I V GC G+ D+GKRPLM A + +D+ ++TSDNP EDP +I++ + G+
Sbjct: 370 TLAKGRVIVVFGCGGDRDKGKRPLMGTAAAEGADLVVVTSDNPRTEDPAEIIEQVTPGLE 429
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDI-RRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ G+ +G + +L D RR A+ AV + E D+V+VAGKGHETYQI
Sbjct: 430 KGGLRRISAGKAK------SGEKGYLVDADRRAAIETAVGLAREDDVVLVAGKGHETYQI 483
Query: 361 EGDKKEFFDDREESREAL 378
G +K FDDRE + +AL
Sbjct: 484 VGTEKRPFDDREAATKAL 501
>gi|75907370|ref|YP_321666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Anabaena variabilis ATCC 29413]
gi|123610271|sp|Q3ME15.1|MURE_ANAVT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|75701095|gb|ABA20771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Anabaena variabilis ATCC 29413]
Length = 496
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 206/361 (57%), Gaps = 24/361 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A+ ++ G E VME SSH LA GR F++ VF+NLT+DH+D+H
Sbjct: 158 TTPFAVELQQQLAQAVNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSD 217
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKA LFS D + R ++N DD I +P+ V ++++ + AD+
Sbjct: 218 MEDYFAAKALLFSP--DYLKGRAIINADDTYGQRLIKALSPE-KVWSYSVNDSSADLWMS 274
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
++TP G + S L+G++N+ N+LA+V + +G L+ I I E
Sbjct: 275 DLSYEPNGVTGTIHTPEGDVSFRSPLVGQYNLENLLASVGAVLHLGLDLQLIANAIPEFP 334
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I+ +Q VIVDYAHTPD+L LL + R P R+I V GC G+ DR KR
Sbjct: 335 GVPGRMERVQINPDQDISVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKR 394
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA + +D+ +TSDNP EDP ILDD+LAG+ T+Q + G+
Sbjct: 395 PKMGKIAAELADLAFVTSDNPRTEDPEKILDDILAGIPDTVQPTV-IGD----------- 442
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDE 383
R +A+R A+ + GD V++AGKGHE YQI G +K FDDRE +R AL ++
Sbjct: 443 -------RAIAIRTAILQAQPGDGVLLAGKGHEDYQILGTEKIHFDDREHARAALTEREK 495
Query: 384 L 384
L
Sbjct: 496 L 496
>gi|448820555|ref|YP_007413717.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Lactobacillus plantarum ZJ316]
gi|448274052|gb|AGE38571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Lactobacillus plantarum ZJ316]
Length = 493
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 151/387 (39%), Positives = 210/387 (54%), Gaps = 45/387 (11%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ I D KL + TTPDA+ Q +A M G E V ME SS L LGR
Sbjct: 132 TGLIGTMYRKIK-DEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPNATS 119
+D+DIAVFTNLT+DH+DFH T +Y AKA LF+++ D V+N DDP
Sbjct: 191 IDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGRE 250
Query: 120 FIAQGNPDVPVVTFAM--------ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGL 171
F + V+TF + +N + H +F+LS+F + ++ L
Sbjct: 251 F--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFG---------HVTHVTMQL 299
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD 231
+G+ N+YN+LAA A A G P + I++ +E+V V GR + + VIVDY+HTPD
Sbjct: 300 IGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPD 359
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
L L+++++ A + I VVGC G+ D+ KRP M KIA + S I TSDNP E+P
Sbjct: 360 GLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTENPTM 419
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL+DM+AGV PN D R VA+ A+ + GD+V++A
Sbjct: 420 ILNDMVAGV-------------------PNADVPVYED-RHVAIAKAIEAAQPGDVVLIA 459
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI G K FDD EE+ +AL
Sbjct: 460 GKGHEDYQIIGRTKHHFDDSEEAAKAL 486
>gi|421860351|ref|ZP_16292482.1| UDP-N-acetylmuramyl tripeptide synthase [Paenibacillus popilliae
ATCC 14706]
gi|410830099|dbj|GAC42919.1| UDP-N-acetylmuramyl tripeptide synthase [Paenibacillus popilliae
ATCC 14706]
Length = 498
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 151/384 (39%), Positives = 214/384 (55%), Gaps = 25/384 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G ++G++ ++ G KL TTP+A+ +Q+ + M G EAV ME SSH L GR
Sbjct: 130 GRKSGVIGTIEMRYDG-RKLPMSGTTPNALELQHSLRDMADCGVEAVAMEVSSHALDQGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP------ERHRKVVNIDDP 115
F AVFTNLT+DH+D+H T E YR+AK LFSR+ + ER V+N DDP
Sbjct: 189 VEGCRFRTAVFTNLTQDHLDYHETMESYRDAKGLLFSRLGNTYCKQEVERSYAVLNADDP 248
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+ F + +T+ + + AD+ ++ T V+T G ++ ++G+
Sbjct: 249 ASALFAKLTAAET--LTYGL-SASADIRAEDIRMNGKGTSFRVHTFRGSADVQLRMVGKF 305
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+ N LAA+AVG+ G L+DI +E V V GR E ++ Q + VIVDYAHTPD L
Sbjct: 306 NVCNALAAIAVGLIEGIALDDICASLEAVPGVAGRVEAVEAGQPYTVIVDYAHTPDGLEN 365
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L SV+E A RII V GC G+ DR KRP+M +I+ +D +I+TSDNP E P IL+D
Sbjct: 366 VLQSVKEFAVGRIICVFGCGGDRDRKKRPIMGQISARYADYSIITSDNPRTEKPDRILED 425
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ G+ E + P HR RR A+ A+ M D+V++AGKGH
Sbjct: 426 IERGL----------TEMEVVP-----HRYECIVDRRAAIAKAIDMASPHDVVLIAGKGH 470
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQI G + FDDR + EA++
Sbjct: 471 ETYQIIGRETFDFDDRLVASEAIR 494
>gi|422338261|ref|ZP_16419221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Fusobacterium nucleatum subsp. polymorphum F0401]
gi|355372899|gb|EHG20238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Fusobacterium nucleatum subsp. polymorphum F0401]
Length = 485
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 209/373 (56%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y I GD E+ TTP+++ + + K L E VVME SSH L +GR VDF
Sbjct: 131 IGTIEYKI-GDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVEVVDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D + V+NIDD + D
Sbjct: 190 DYALFTNLTQDHLDYHITMENYFQAKRKLFLKLKDI--NNSVINIDDKYGKRLYDEFIVD 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ ++ + L + + + + I ++ LLG N+YN L A+ +
Sbjct: 248 NPEIISYGIDGGDLEGDYLD------DGYIDIKYKNQIEKVKFALLGDFNLYNTLGAIGI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G +E+I++ + + A PGR E +D Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 ALKIGISIEEILKRVSTIKAAPGRFEALDCGQDYKVIVDYAHTPDALVNVIVAARNIKNG 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K A D SD+ ILTSDNP E P I DD+ G
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPDQIFDDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
++K +DY F R A++ A+ M E+ D++++ GKGHETY I G KK
Sbjct: 416 -FIK--SDDY----------FFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|229030279|ref|ZP_04186333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus AH1271]
gi|228731032|gb|EEL81960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus AH1271]
Length = 500
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 147/389 (37%), Positives = 217/389 (55%), Gaps = 41/389 (10%)
Query: 2 GLRTGMLSSVSYYIHGDNKLE-SPRTTPDAV------MVQNLMAKMLHNGTEAVVMEASS 54
G +TG++ G+N ++ P+ P + ++Q + M ++ T+ VME +S
Sbjct: 137 GFQTGLM--------GNNGVKVGPKWYPTDINTQEPPILQRNLQMMKNHNTDYCVMEVTS 188
Query: 55 HGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD----PERHRKVV 110
GL + R +F AVFTNLT+DH+D+HGT EEY+ K LFSR+ + ++ ++
Sbjct: 189 QGLHMERVKGCNFKTAVFTNLTQDHLDYHGTFEEYKQVKGLLFSRLGNDFSTTDKKIAIL 248
Query: 111 NIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSG 170
N DDP+ F + V+T+ + N ADV LS Q LV+T +G EI+
Sbjct: 249 NADDPSVEYF--KKVTSAEVITYGIHNG-ADVQAKNITLSPKGIQFLVSTFNGEKEINLN 305
Query: 171 LLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTP 230
L+GR N+YN LAA+ V + PL +I + V ++ GR E+IDE Q F VIVDYAHTP
Sbjct: 306 LVGRFNVYNALAAITVALVEDIPLTNISDSLSHVKSIEGRMEIIDENQDFLVIVDYAHTP 365
Query: 231 DALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPL 290
DAL +L ++ E + +IITV GC G+ D KR +M +IA SD +TSDNP +EDP
Sbjct: 366 DALENVLSTISEFSKGKIITVFGCGGDRDTKKRSIMGEIAGSYSDFVYITSDNPRSEDPQ 425
Query: 291 DILDDMLAGVGWTMQEYLKYG-ENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVV 349
I+ D+ G+ + L Y E D R +A+ A+ M D+V+
Sbjct: 426 AIMKDIEKGL--SQNNNLNYKVEVD----------------RELAINHAINMASSNDIVL 467
Query: 350 VAGKGHETYQIEGDKKEFFDDREESREAL 378
+AGKGHETYQI D FD++E++R+A+
Sbjct: 468 IAGKGHETYQILKDSTIHFDNKEKARQAI 496
>gi|373458536|ref|ZP_09550303.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
iaminopimelateligase [Caldithrix abyssi DSM 13497]
gi|371720200|gb|EHO41971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
iaminopimelateligase [Caldithrix abyssi DSM 13497]
Length = 488
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 146/376 (38%), Positives = 213/376 (56%), Gaps = 25/376 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ Y I G K+++ TTP++V + ++ ++ EA V+E SSH LAL R
Sbjct: 134 GKPAGVIGTIQYLI-GGQKIDAWNTTPESVDICRMLYELAQQNFEACVLEVSSHALALNR 192
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ F VFTNL+RDH+DFH T E Y AK +LF+ ++ P R V+N DDP I
Sbjct: 193 VDGLKFKAGVFTNLSRDHLDFHKTMENYFEAKMRLFT-LLHP-RGTAVINFDDPYVKKAI 250
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ + V+TF + +++DV+ L L + + + TP G LEI SGL G N+ NI+
Sbjct: 251 DR--IEQAVITFGYD-RRSDVYVLAERLDINGIYLKLQTPFGPLEIHSGLRGHFNVQNIM 307
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AAV G+A+G L+ I RGIE++D VPGR E + + ++DYAHTPD+L + L S+R
Sbjct: 308 AAVGSGLALGLNLDAIKRGIEKLDRVPGRLEPYEVKPGVLAVIDYAHTPDSLEKALQSLR 367
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
L R+I V G G+ D GKRPLM A ++DV I+TSDNP EDP I+DD+L G+
Sbjct: 368 PLTSGRLIVVFGAGGDRDCGKRPLMGAAAEKQADVVIVTSDNPRTEDPQKIIDDILTGI- 426
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
+ + R+ A+ AV + GD++++AGKGHE YQ
Sbjct: 427 ------------------EKKEKCQVIVDRKQAIFQAVHQAQAGDVILIAGKGHEMYQDV 468
Query: 362 GDKKEFFDDREESREA 377
K FD+ +EA
Sbjct: 469 NGVKHPFDEVAILKEA 484
>gi|408356954|ref|YP_006845485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Amphibacillus xylanus NBRC 15112]
gi|407727725|dbj|BAM47723.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Amphibacillus xylanus NBRC 15112]
Length = 491
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 143/378 (37%), Positives = 217/378 (57%), Gaps = 28/378 (7%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
T ++ ++ I GD TTP+ +Q+ KM+ + +ME SSH L LGR +
Sbjct: 133 TAVIGTIQMKI-GDQVYPIANTTPEPSYLQHSFRKMVEQNIDHCMMEVSSHALELGRVNG 191
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATSF 120
DFDIAV+TNL++DH+DFH T ++Y AK +LFS + + + + ++N DD A F
Sbjct: 192 CDFDIAVYTNLSQDHLDFHETMDDYLAAKLRLFSHLGNRYQLEQPKFAIINQDDQYANDF 251
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I + V+T+ ++ ++AD +L+ TQ ++T ++I++ L+G+ NIYN+
Sbjct: 252 INATSQ--RVITYGID-QEADFTARNIQLTANGTQFTLDTGEQQIDITTPLIGKFNIYNM 308
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA+A G L I + + + VPGR E + + F VIVD+AHTPD+L +L ++
Sbjct: 309 LAAIATAYISGVSLATIRLALSQSNGVPGRFETVKGDHDFSVIVDFAHTPDSLGNVLTTI 368
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R A ++I VVGC G+ DR KRPLM K+ D +D ILTSDNP EDPL I+ DM AG+
Sbjct: 369 RTFATQKIYLVVGCGGDRDRTKRPLMAKVGEDHADYLILTSDNPRTEDPLTIISDMEAGL 428
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
T +EY E D R+ A+ A+ + + GD+V++AGKGHET Q
Sbjct: 429 --TGKEYTV--EVD----------------RKKAIEYAINLAKSGDVVLIAGKGHETTQT 468
Query: 361 EGDKKEFFDDREESREAL 378
G + F+D ++EA+
Sbjct: 469 IGKETLPFNDYLVAQEAI 486
>gi|421074500|ref|ZP_15535531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans JBW45]
gi|392527371|gb|EIW50466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans JBW45]
Length = 500
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 211/375 (56%), Gaps = 23/375 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ I GD + + TTPD + +Q L+A+M + VVME SSH LAL R
Sbjct: 135 GFHVGVIGTIQNSI-GDKIVPTQNTTPDVIDLQRLLAEMAEANMDYVVMEVSSHALALNR 193
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
+ +FD+ +FTN+TRDH+DFH T E Y AK +LF + + ++ ++N DD A
Sbjct: 194 VAGCEFDVGIFTNMTRDHLDFHVTFERYLEAKTRLFQLLSSKDNQKEGKTAIINTDD-KA 252
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+FI + +T+ +EN AD+ + + + GI+ + + G N+
Sbjct: 253 AAFILE-RTGCNTITYGIENH-ADLQAKNTNIQAKGAEFDIIGSFGIMPLQLKITGLFNV 310
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+L+AV +A G I +E +V GR EL+D Q F +IVDYAHTPD L +L
Sbjct: 311 YNVLSAVGAALAEGIDAPIIKAALEMFQSVSGRFELVDGGQPFSIIVDYAHTPDGLENIL 370
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ +++A +RII V GC G+ D+ KRP+M K+A ++ I TSDNP EDP +IL ++
Sbjct: 371 KTAQQIAKKRIIVVFGCGGDRDKTKRPIMGKLAVQYGNIVIATSDNPRTEDPENILSEIE 430
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+ QE L G+ Y + + RR A+ A+++ E D+V++AGKGHE
Sbjct: 431 VGI----QESLTSGK--IYEKIID---------RRQAIERALSVAEADDIVIIAGKGHEN 475
Query: 358 YQIEGDKKEFFDDRE 372
YQI D+ FDD+E
Sbjct: 476 YQILKDRTIPFDDKE 490
>gi|153953809|ref|YP_001394574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium kluyveri DSM 555]
gi|219854425|ref|YP_002471547.1| hypothetical protein CKR_1082 [Clostridium kluyveri NBRC 12016]
gi|146346690|gb|EDK33226.1| MurE [Clostridium kluyveri DSM 555]
gi|219568149|dbj|BAH06133.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 485
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 146/386 (37%), Positives = 218/386 (56%), Gaps = 43/386 (11%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++S YI G+ K+ S RTTP+++ +Q L +M+ +G + VMEASSH L L R
Sbjct: 129 GYKVGVVGTISNYI-GNKKIPSHRTTPESLELQKLFKEMVDDGVDYCVMEASSHSLYLDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V+F A+FTNLTRDH+DFH T EEY +K LF V+ V+NIDD
Sbjct: 188 VYGVEFCQALFTNLTRDHLDFHKTFEEYYKSKIILFKNTVNS-----VINIDDKYGERVY 242
Query: 122 --AQGNPDVPVVTFAMENKKADVHPLKFELSL----FETQVLVNTPHGILEISSGLLGRH 175
A+G +T+A++ K AD+ ++ F NT H I+ + G++
Sbjct: 243 EDAKGKK----LTYAID-KNADLMADNLKIHSRGVNFNISYEGNTKH----INLNIPGKY 293
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYAHTPDAL 233
N+ N L + V +A G L + +G+E++ +VPGRCE++ + G V+VDYAHTPD L
Sbjct: 294 NVMNALGSAGVCLAEGIDLNTVKKGLEDMPSVPGRCEIVTKSYNLGYEVVVDYAHTPDGL 353
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L RE ++I+V GC G+ D KRP+M I T SD ++TSDNP E+P+ I+
Sbjct: 354 ENILKCAREFTKGKLISVFGCGGDRDSTKRPIMGNIGTKFSDFAVVTSDNPRGEEPMAII 413
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
D+L G+ + + Y + N R+ A++ A+ M E GD+VV+AGK
Sbjct: 414 KDILTGI-----------KKNNYIVIEN---------RKEAIKKAMEMAETGDVVVIAGK 453
Query: 354 GHETYQIEGDKKEFFDDREESREALQ 379
GHE YQI D+ FD+RE E ++
Sbjct: 454 GHEDYQILKDRTIHFDEREIVAEIIE 479
>gi|381209805|ref|ZP_09916876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Lentibacillus sp. Grbi]
Length = 489
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 140/380 (36%), Positives = 218/380 (57%), Gaps = 28/380 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I G++ TTPDA+ +Q +M + + +ME SSH L +GR
Sbjct: 130 KTGIIGTIQMKI-GNDAYPVHNTTPDALYLQKTFHEMNEHDVDTAIMEVSSHALDMGRVH 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRKVVNIDDPNATS 119
DFDIAVFTNL++DH+D+H +Y +AK+ LF+++ + ++ V+N DDPN+
Sbjct: 189 GCDFDIAVFTNLSQDHLDYHPDMNDYLHAKSLLFAQLGNTYNEGQKKFAVINEDDPNSAF 248
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
I V +T+ ++ A V L + +T ++TP G + I+S L+G+ N+YN
Sbjct: 249 LIKSTAQHV--LTYGCQSG-AQVKAEDINLDVTKTTFTMHTPIGSVMINSSLIGKFNVYN 305
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA A I+ G PLE I +E + V GR E ++ F +VDYAHTPD+L +L +
Sbjct: 306 MLAASAAAISAGIPLEVIKEALEAMQGVSGRFEPVEGSHEFAAVVDYAHTPDSLENVLQT 365
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
++ A + VVGC G+ D+ KRPLM +A +D I TSDNP EDP ILDDM G
Sbjct: 366 IKGFAENNVYVVVGCGGDRDKTKRPLMASVALQYADQVIFTSDNPRTEDPQAILDDMTKG 425
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ T ++ + N R+ A+ A+++ ++GD++++AGKGHETYQ
Sbjct: 426 LNET-----------HFSVIEN---------RKDAIFHAISLAKKGDIILIAGKGHETYQ 465
Query: 360 IEGDKKEFFDDREESREALQ 379
G + FDDRE ++ A+Q
Sbjct: 466 DIGRARYDFDDREVAKAAIQ 485
>gi|301054131|ref|YP_003792342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus cereus biovar anthracis str. CI]
gi|300376300|gb|ADK05204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus cereus biovar anthracis str. CI]
Length = 492
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 211/381 (55%), Gaps = 25/381 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ + + G + T + +Q + M + + VME +S GL + R
Sbjct: 130 GYHTGLMGNNGVKV-GSKWYPTDINTQEPPTLQRNLQMMKNRNADYCVMEVTSQGLHMER 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD----PERHRKVVNIDDPNA 117
+F IAVFTNLT+DH+D+HGT +EY++ K LF+R+ + E+ V+N DDP+
Sbjct: 189 VKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKGLLFARLGNDLSTTEKKIAVLNADDPSV 248
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + V+T+ + N ADV LS LV++ +G +E+S L+GR N+
Sbjct: 249 EYF--KKITSAEVITYGIHNG-ADVQAKNITLSPKGIHFLVSSFNGEIEVSLNLVGRFNV 305
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ V + G PL +I + ++ GR E+IDE Q F VIVDYAHTPDAL +L
Sbjct: 306 YNALAAITVAMVEGIPLTNICDSFSNLKSIEGRMEIIDENQDFLVIVDYAHTPDALENVL 365
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E + ++ITV GC G+ D KR +M IA SD +TSDNP +EDP I+ D+
Sbjct: 366 STISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIE 425
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G +L+ +Y + R +A+ A+ M D+V++AGKGHET
Sbjct: 426 KG-------FLQNNNLNYKVEVD----------RELAINHAINMASSNDIVLIAGKGHET 468
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI D FDD+E++R+A+
Sbjct: 469 YQILKDSTIHFDDKEKARQAI 489
>gi|365925141|ref|ZP_09447904.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420266307|ref|ZP_14768787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394425743|gb|EJE98669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 495
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 150/391 (38%), Positives = 218/391 (55%), Gaps = 35/391 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G +TG++ ++ Y D L++ TTPD + +Q + KM+ G V ME SS L G
Sbjct: 129 LGEKTGLIGTM-YRKIDDEILKTKNTTPDIITLQRTLNKMVEKGVSTVAMEVSSIALIQG 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-----KVVNIDDP 115
R +DFD+AVFTNLT+DH+D+H T Y +AK+ LFS++ + H V+NIDDP
Sbjct: 188 RVWGIDFDVAVFTNLTQDHLDYHKTMANYEHAKSLLFSQLGNKYTHSGDSKVAVLNIDDP 247
Query: 116 NATSFIAQGNPDVPVVTFAMENK---KADVHPLKFELSLFETQVLVNTPHGILEISSGLL 172
F + + ++T+ ++ + KA + E + F+ V H +S ++
Sbjct: 248 VGERF--EADTAAEILTYGIKKEAMIKAGNIEIHSEGTDFDLIVFGEKFH----LSVKMV 301
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
G N+YNILAA A A G EDI+ +E+ V GR +LI IVDY+HTPD
Sbjct: 302 GLFNVYNILAAFAAAYACGVESEDIIGALEKFPGVKGRLQLITSASKVSAIVDYSHTPDG 361
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L L+++ + A ++ VVGC G+ D+ KRP M KIA + SD I TSDNP +E+P I
Sbjct: 362 LLNALETINDFAKGKVFCVVGCGGDRDKLKRPKMAKIAVEHSDYPIFTSDNPRSENPQTI 421
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+D+ML GV ++ P N RR A+ AVAM + D++++AG
Sbjct: 422 IDEMLVGVPEQVE----------IPTFVN---------RREAINFAVAMAKPKDIILIAG 462
Query: 353 KGHETYQIEGDKKEFFDDREESREALQYVDE 383
KGHE YQI GD K FDD EE+++AL Y+ E
Sbjct: 463 KGHEDYQIIGDTKHHFDDVEEAKKAL-YLKE 492
>gi|229159095|ref|ZP_04287146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus ATCC 4342]
gi|228624362|gb|EEK81138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus ATCC 4342]
Length = 499
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 214/381 (56%), Gaps = 25/381 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ + + G + T + +Q + M + + VME +S GL + R
Sbjct: 137 GYHTGLMGNNGVKV-GSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMER 195
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRKVVNIDDPNA 117
+F IAVFTNLT+DH+D+HGT +EY++ K+ LF+R+ + ++ V+N DDP+
Sbjct: 196 VKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSV 255
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + V+T+ + N ADV LS + LV++ +G +E+S L+GR N+
Sbjct: 256 EYF--KKITSAEVITYGIHNG-ADVQAKNITLSPKGIRFLVSSFNGQIEVSLNLVGRFNV 312
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ V + G PL +I + + ++ GR E+IDE Q F VIVDYAHTPDAL +L
Sbjct: 313 YNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDENQDFLVIVDYAHTPDALENVL 372
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E + ++ITV GC G+ D KR +M IA SD +TSDNP +EDP I+ D+
Sbjct: 373 STISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIE 432
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G +L+ +Y + R +A+ A+ M D+V++AGKGHET
Sbjct: 433 KG-------FLQNNNLNYKVEVD----------RELAINHAINMASSNDIVLIAGKGHET 475
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI D FDD+E++R+A+
Sbjct: 476 YQILKDSTIHFDDKEKARQAI 496
>gi|116750885|ref|YP_847572.1| UDP-N-acetylmuramyl-tripeptide synthetases [Syntrophobacter
fumaroxidans MPOB]
gi|116699949|gb|ABK19137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Syntrophobacter fumaroxidans MPOB]
Length = 504
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 145/372 (38%), Positives = 210/372 (56%), Gaps = 12/372 (3%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G+L ++ +Y G + TTP+++ +Q L +M +G VVME SSH LA GR
Sbjct: 131 GHSVGVLGTL-FYRWGAKSKTAGMTTPESLDLQGLFYEMREDGVTHVVMEVSSHALAQGR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+E FD AVFTNL++DH+D+H T E+Y AK+ LFS + V+N DDP +
Sbjct: 190 VAECAFDAAVFTNLSQDHLDYHVTMEDYFAAKSLLFSEYLRTG-SVAVINGDDPYGARLV 248
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ P + E +A V + S E ++ P G ++I S L+GR N+YNIL
Sbjct: 249 EKAGPGAWSYSTGSEAARAHVKSARLTASGIEARLC--GPDGSMDIHSPLIGRLNLYNIL 306
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEE-QAFGVIVDYAHTPDALSRLLDSV 240
AAV +A+G P I G+ + +V GR + + F V+VDYAHTPDA+ + L +
Sbjct: 307 AAVTASLAMGVPEAAIREGVAGLTSVDGRLQRVASPGTGFEVVVDYAHTPDAMEKSLGCL 366
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
RE+ R++ V GC G+ DRGKRPLM K+A D+ I+TSDNP +E P I+D++ GV
Sbjct: 367 REMTAGRLLVVFGCGGDRDRGKRPLMGKVAGALGDLVIVTSDNPRSEVPERIIDEIEPGV 426
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDI-RRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ E + E NG R ++ ++ R+ A+ A+A GD V + GKGHETYQ
Sbjct: 427 RASGLERILAAEPG------NGARGYIVEVDRKSAIEKALAWARPGDTVFIGGKGHETYQ 480
Query: 360 IEGDKKEFFDDR 371
+ G + FDDR
Sbjct: 481 LVGGEVLPFDDR 492
>gi|428771903|ref|YP_007163691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cyanobacterium stanieri PCC 7202]
gi|428686182|gb|AFZ46042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cyanobacterium stanieri PCC 7202]
Length = 498
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 212/377 (56%), Gaps = 27/377 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+T + ++ Y D + + TTP AV +Q + + + G + VME SSH LA R
Sbjct: 138 KTALFGTL-YARWQDYQKTASHTTPFAVDLQAQLTEAVKAGNQYAVMEVSSHALAQKRIK 196
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
FD+AVFTNLT+DH+D+H E+Y AKA LF+ + + + ++N DDP I
Sbjct: 197 GCHFDVAVFTNLTQDHLDYHKDMEDYFQAKALLFNS--EYLKGKAIINYDDPYGQRLIKS 254
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
+ V ++++ N +AD++ + +++TP G ++ SS L+G+ N+ N+LA
Sbjct: 255 VDN---VWSYSVTNPEADLYTTDLVYQATGVEGILHTPQGEIKFSSPLVGQFNLANLLAG 311
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELID--EEQAFGVIVDYAHTPDALSRLLDSVR 241
V + +G L+ I + + VPGR E + +Q VIVDYAHTPD+L LL + R
Sbjct: 312 VGAVLQLGIDLDTIAHCLPQFTGVPGRMERVQVKSDQDVTVIVDYAHTPDSLENLLKASR 371
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
++I V GC G+ DR KRP+M KIATD +DV ++TSDNP E+P IL+D+L G+
Sbjct: 372 PFIQGKMICVFGCGGDRDRTKRPIMGKIATDLADVVVVTSDNPRTENPTQILEDILTGI- 430
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
P + + R +A++ A+ + GD V++AGKGHE YQI
Sbjct: 431 ------------------PKHIKPIVQGDRSLAIQTAIQTAQAGDGVLIAGKGHEDYQIL 472
Query: 362 GDKKEFFDDREESREAL 378
G +K FDDREE+++AL
Sbjct: 473 GTEKVHFDDREEAQKAL 489
>gi|15895398|ref|NP_348747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium acetobutylicum ATCC 824]
gi|337737346|ref|YP_004636793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium acetobutylicum DSM 1731]
gi|384458855|ref|YP_005671275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium acetobutylicum EA 2018]
gi|21362710|sp|Q97H84.1|MURE1_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase 1; AltName:
Full=Meso-A2pm-adding enzyme 1; AltName:
Full=Meso-diaminopimelate-adding enzyme 1; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
1; AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
1
gi|15025119|gb|AAK80087.1|AE007713_12 UDP-N-acetylmuramyl tripeptide synthase, MurE [Clostridium
acetobutylicum ATCC 824]
gi|325509544|gb|ADZ21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium acetobutylicum EA 2018]
gi|336291890|gb|AEI33024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium acetobutylicum DSM 1731]
Length = 482
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 214/388 (55%), Gaps = 47/388 (12%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ YI GD K+ES RTTP+++ +Q L + M+H+ + VME SSH L L R
Sbjct: 129 GYKVGLIGTIANYI-GDKKIESHRTTPESLELQKLFSDMVHDKIDYCVMEVSSHSLYLDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS-F 120
+ F+ +FTNLT+DH+DFH T E Y AK LF R ++NIDD F
Sbjct: 188 VYGIVFEEGIFTNLTQDHLDFHKTFENYYKAKMILF-----KNSKRSIINIDDKYGERVF 242
Query: 121 IAQGNPDVPV-----VTFAMENKKADVHPLKFELSL--FETQVLVNTPHGILEISSGLLG 173
GN + EN K +F+L V +N P G
Sbjct: 243 KDAGNDKITYGLTEKADLKAENLKMTSRGTEFDLCYRGLREHVKINIP-----------G 291
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTPD 231
++N+YN L +VA + G +E + G+ ++ +VPGRCE++ F V++DYAHTPD
Sbjct: 292 KYNVYNALGSVAACLNEGISIEKVKDGLNKLSSVPGRCEIVTHNTNLDFDVVLDYAHTPD 351
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
L ++L + RE R+I+V GC G+ D+ KRP+M +I + SD+ ++TSDNP +E+P +
Sbjct: 352 GLEKVLKASREFTKGRLISVFGCGGDRDKTKRPIMGEIGSKLSDIAVITSDNPRSENPEE 411
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
I+ D++ G+ + D Y + N R+ A++ A+ M ++ D++V+A
Sbjct: 412 IIKDIVQGI-----------KTDNYVIVEN---------RKEAIKKAMLMAKKDDVIVLA 451
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHE YQI GDK FD++E E ++
Sbjct: 452 GKGHENYQILGDKTIHFDEKEIVSEFIK 479
>gi|42781669|ref|NP_978916.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacillus cereus ATCC 10987]
gi|42737592|gb|AAS41524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus ATCC 10987]
Length = 492
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 202/351 (57%), Gaps = 26/351 (7%)
Query: 33 VQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNA 92
+Q + M + + VME +S GL + R +F IAVFTNLT+DH+D+HGT EY++
Sbjct: 160 LQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFHEYKHV 219
Query: 93 KAKLFSRMVD----PERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFE 148
K LFSR+ + ++ V+N DDP+ F + V+T+ + N+ ADV
Sbjct: 220 KGLLFSRLGNDLSTTDKKIAVLNADDPSVEYF--KKITSAEVITYGIHNR-ADVQAKNIT 276
Query: 149 LSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVP 208
LS + LV++ +G +E++ L+GR N+YN LAA+ V + G PL +I + + ++
Sbjct: 277 LSPKGIRFLVSSFNGEIEVNLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIE 336
Query: 209 GRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTK 268
GR E+IDE Q F VIVDYAHTPDAL +L ++ E + ++ITV GC G+ D KR +M
Sbjct: 337 GRMEIIDENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDTKKRSIMGG 396
Query: 269 IATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYG-ENDYYPPLPNGHRLFL 327
IA SD +TSDNP +EDP I+ D+ G++ L Y E D
Sbjct: 397 IAGSYSDFVFITSDNPRSEDPQAIMKDIEK--GFSQNNNLNYKVEVD------------- 441
Query: 328 HDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
R +A+ A+ M D+V++AGKGHETYQI D FDD+E++R+A+
Sbjct: 442 ---RELAITHAINMASSNDIVLIAGKGHETYQILKDSTIHFDDKEKARQAI 489
>gi|354568801|ref|ZP_08987963.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Fischerella sp. JSC-11]
gi|353539606|gb|EHC09090.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Fischerella sp. JSC-11]
Length = 499
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/356 (41%), Positives = 203/356 (57%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q+ +A + G E VME SSH LA GR F++ VF+NLT+DH+DFH
Sbjct: 159 TTPFAVELQHQLATAIAAGNEYGVMEVSSHALAQGRVMGCKFEVGVFSNLTQDHLDFHRD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKA LF+ D + R ++N DD IA + D V ++++ N AD+
Sbjct: 219 MEDYFAAKALLFNS--DYLKGRAIINADDAYGQRLIASLDAD-QVWSYSVSNSTADLWMS 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
++TP G S L+G++N+ N+LAAV + +G LE +V I E
Sbjct: 276 DLSYEPNGVSGKLHTPEGDATFRSPLVGQYNLENLLAAVGAVLHLGLDLELVVSTIPEFP 335
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E ++ +Q VIVDYAHTPD+L LL + R P ++I V GC G+ DR KR
Sbjct: 336 GVPGRMERVQVNPQQDISVIVDYAHTPDSLENLLKASRPFIPGKMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA + +DV ++TSDNP EDP IL D+LAG+ T+Q
Sbjct: 396 PKMGKIAAELADVAVVTSDNPRTEDPERILQDILAGIPETVQP----------------- 438
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+ + D R A+R A+ + GD V++AGKGHE YQI G +K FDDRE +R+AL+
Sbjct: 439 -IVICD-RATAIRSAILEAQPGDGVLLAGKGHEDYQILGTEKIHFDDREHARDALE 492
>gi|414079638|ref|YP_007001062.1| UDP-N-acetylmuramyl tripeptide synthetase [Anabaena sp. 90]
gi|413972917|gb|AFW97005.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anabaena sp. 90]
Length = 496
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/356 (40%), Positives = 202/356 (56%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +AK ++ G E VME SSH L GR F++ VFTNLT+DH+D+H
Sbjct: 156 TTPFAVDLQQQLAKAMNAGCETGVMEVSSHALHQGRVLNCAFEVGVFTNLTQDHLDYHKD 215
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKA LFS + R ++N DD IA +P+ V ++++ + AD
Sbjct: 216 MEDYFAAKALLFSP--NYLHGRAIINADDAYGKRIIASLSPE-QVWSYSVNDSTADFWMS 272
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+++TP G ++ S L+G++N+ N+LAAV + VG L+ + I
Sbjct: 273 DLNYQPNGVSGILHTPQGNVDFSCPLVGQYNLENLLAAVGAVVHVGLDLQLVANAIPGFP 332
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q VIVDYAHTPD+L LL + R P ++I V GC G+ DR KR
Sbjct: 333 GVPGRMERVQIHPQQDISVIVDYAHTPDSLENLLKAARPFIPGKMICVFGCGGDRDRTKR 392
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA + +D+ ++TSDNP E+P IL D+LAG+ +Q
Sbjct: 393 PKMGKIAAELADLAVVTSDNPRTENPEKILQDVLAGIPDIVQP----------------- 435
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+ + D R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++REALQ
Sbjct: 436 -MVVSD-RATAIRTAILQAQPGDGVLLAGKGHEDYQILGTEKIHFDDREQAREALQ 489
>gi|392960450|ref|ZP_10325918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans DSM 17108]
gi|421054794|ref|ZP_15517759.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelosinus fermentans B4]
gi|421058874|ref|ZP_15521519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans B3]
gi|421066757|ref|ZP_15528317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans A12]
gi|421071656|ref|ZP_15532772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans A11]
gi|392440475|gb|EIW18155.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelosinus fermentans B4]
gi|392446921|gb|EIW24192.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans A11]
gi|392453226|gb|EIW30113.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans A12]
gi|392455027|gb|EIW31834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans DSM 17108]
gi|392459916|gb|EIW36276.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans B3]
Length = 500
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/375 (36%), Positives = 211/375 (56%), Gaps = 23/375 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ I GD + + TTPD + +Q L+A+M + VVME SSH LAL R
Sbjct: 135 GFHVGVIGTIQNSI-GDKIIPTQNTTPDVIDLQRLLAEMAEANMDYVVMEVSSHALALNR 193
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
+ +FD+ +FTN+TRDH+DFH T E Y AK +LF + + ++ ++N DD A
Sbjct: 194 VAGCEFDVGIFTNMTRDHLDFHVTFEGYLEAKTRLFQLLSSKDNQKEGKTAIINTDD-KA 252
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+FI + +T+ +EN AD+ + + + GI+ + + G N+
Sbjct: 253 AAFILE-RTGCNTITYGIENY-ADLQAKNTNIQAKGAEFDIIGSFGIMPLQLKITGLFNV 310
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+L+AV +A G + I +E +V GR EL+D Q F +IVDYAHTPD L +L
Sbjct: 311 YNVLSAVGAALAEGIDVPIIKAALEAFQSVSGRFELVDGGQPFSIIVDYAHTPDGLENIL 370
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ +++A +RII V GC G+ D+ KRP+M K+A ++ I TSDNP EDP IL ++
Sbjct: 371 KTAKQIAKKRIIVVFGCGGDRDKTKRPIMGKLAVQYGNIVIATSDNPRTEDPQSILSEIE 430
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+ Q+ L G+ Y + + RR A+ A+++ E D+V++AGKGHE
Sbjct: 431 VGI----QDSLTPGK--IYEKIVD---------RRQAIERALSVAETDDIVIIAGKGHEN 475
Query: 358 YQIEGDKKEFFDDRE 372
YQI D+ FDD+E
Sbjct: 476 YQILKDRTIPFDDKE 490
>gi|307150713|ref|YP_003886097.1| UDP-N-acetylmuramyl tripeptide synthetase [Cyanothece sp. PCC 7822]
gi|306980941|gb|ADN12822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822]
Length = 496
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 206/355 (58%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +A+ L G++ VME SSH LA R E F++AVFTNLT+DH+DFH
Sbjct: 159 TTPFAAQLQEQLAQALKAGSQYGVMEVSSHALAQRRVQECPFEVAVFTNLTQDHLDFHQD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKAKLFS + + + ++N+DDP I + + V ++++ + A+ +
Sbjct: 219 MEDYFAAKAKLFS--AEYLKGKAIINLDDPYGKRLIDSLSRE-KVWSYSVSDSSANFYTR 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+++TP G + S L+G++NI N+LAAV +++G L+ IV+ +
Sbjct: 276 DLCYEANGVSGILHTPIGEVAFYSPLVGQYNIANLLAAVGAVVSLGLDLKAIVQYLPLFV 335
Query: 206 AVPGRCELI--DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
AVPGR E + ++Q VIVDYAHTPD+L LL + R R+I V GC G+ DR KR
Sbjct: 336 AVPGRMERVHLSDKQDISVIVDYAHTPDSLENLLKAARPFIEGRMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA + +DV ++TSDNP EDP IL D+LAG+ P
Sbjct: 396 PKMGKIAAELADVAVVTSDNPRTEDPQQILKDILAGI-------------------PESV 436
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + R +A+ A+ + GD V++AGKGHE YQI G +K FDDRE++REAL
Sbjct: 437 KPQVIADRALAILKAITEAKPGDGVLIAGKGHEDYQILGTEKIHFDDREQAREAL 491
>gi|434405188|ref|YP_007148073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermum stagnale
PCC 7417]
gi|428259443|gb|AFZ25393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermum stagnale
PCC 7417]
Length = 495
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/356 (41%), Positives = 201/356 (56%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q + + ++ G + VME SSH LA GR F++ VF+NLT+DH+D+H
Sbjct: 157 TTPFAVELQQQLGEAVNAGCKFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSD 216
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKA LFS D + R ++N DD I + + V ++++ + KAD+
Sbjct: 217 MEDYFAAKALLFSP--DYLQGRAIINADDVYGQRLIGSLSRE-RVWSYSVNDAKADLWMS 273
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
++TP G + S L+G+ N+ N+LAAV + +G LE + I E
Sbjct: 274 DLSYQPHGVSGKLHTPKGDVAFRSPLVGQFNLENLLAAVGAVLHLGLDLELVASVISEFP 333
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I E Q VIVDYAHTPD+L LL + R P ++I V GC G+ DR KR
Sbjct: 334 GVPGRMERVQISETQEISVIVDYAHTPDSLENLLKAARPFIPGKMICVFGCGGDRDRTKR 393
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM KIA + +DV ++TSDNP EDP IL D+LAG+ T+Q +
Sbjct: 394 PLMGKIAAELADVAVVTSDNPRTEDPEKILQDVLAGIPATIQPTVICE------------ 441
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
R +A+R A+ + GD V++AGKGHE YQI G +K FDDRE +REALQ
Sbjct: 442 -------RAIAIRTAILQAKPGDGVLLAGKGHEDYQILGTEKIHFDDREHAREALQ 490
>gi|17229155|ref|NP_485703.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Nostoc sp. PCC 7120]
gi|21362694|sp|Q8YWF0.1|MURE_ANASP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|17135483|dbj|BAB78029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Nostoc sp. PCC 7120]
Length = 496
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/363 (40%), Positives = 206/363 (56%), Gaps = 28/363 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A+ ++ G E VME SSH LA GR F++ VF+NLT+DH+D+H
Sbjct: 158 TTPFAVELQQQLAQAVNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSD 217
Query: 86 EEEYRNAKAKLFSRMVDPE--RHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVH 143
E+Y AKA LFS PE + R ++N DD I +P+ V ++++ + AD+
Sbjct: 218 MEDYFAAKALLFS----PEYLKGRAIINADDTYGQRLIKALSPE-KVWSYSVNDSSADLW 272
Query: 144 PLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEE 203
++TP G + S L+G++N+ N+LAAV + +G L+ I I E
Sbjct: 273 MSDLSYEPNGVTGTIHTPEGNVSFRSPLVGQYNLENLLAAVGAVLHLGLNLQLIANAIPE 332
Query: 204 VDAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRG 261
VPGR E I+ +Q VIVDYAHTPD+L LL + R P R+I V GC G+ DR
Sbjct: 333 FPGVPGRMERVQINPDQDISVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRT 392
Query: 262 KRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPN 321
KRP M KI + +D+ +TSDNP EDP ILDD+LAG+ T+Q + G+
Sbjct: 393 KRPKMGKIVAELADLAFVTSDNPRTEDPDRILDDILAGIPDTVQPTV-IGD--------- 442
Query: 322 GHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYV 381
R +A+R A+ + GD V++AGKGHE YQI G +K FDDRE +R AL
Sbjct: 443 ---------RAIAIRTAILQAQPGDGVLLAGKGHEDYQILGTEKIHFDDREHARAALTER 493
Query: 382 DEL 384
++L
Sbjct: 494 EKL 496
>gi|49477781|ref|YP_036697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|49329337|gb|AAT59983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis serovar konkukian str. 97-27]
Length = 493
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 201/351 (57%), Gaps = 26/351 (7%)
Query: 33 VQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNA 92
+Q + M + + VME +S GL + R +F IAVFTNLT+DH+D+HGT +EY++
Sbjct: 160 LQRNLQMMKNQNVDYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHV 219
Query: 93 KAKLFSRMVD----PERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFE 148
K LFSR+ + ++ V+N DDP+ F + V+T+ + N+ ADV
Sbjct: 220 KGLLFSRLGNDLSTTDKKIAVLNADDPSVEYF--KKITSAEVITYGIHNR-ADVQAKNIT 276
Query: 149 LSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVP 208
LS + LV++ +G +E+S L+GR N+YN LAA+ V + G PL +I + + +
Sbjct: 277 LSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSTLKRIE 336
Query: 209 GRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTK 268
GR E+IDE Q F VIVDYAHTPDAL +L ++ E + ++ITV GC G+ D KR +M
Sbjct: 337 GRMEIIDENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGG 396
Query: 269 IATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYG-ENDYYPPLPNGHRLFL 327
IA SD +TSDNP +EDP I D+ G++ L Y E D
Sbjct: 397 IAGSYSDFVFITSDNPRSEDPQAITKDIEK--GFSQNNNLNYKVEVD------------- 441
Query: 328 HDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
R +A+ A+ M D+V++AGKGHETYQI D FDD+E++R+A+
Sbjct: 442 ---RELAINHAINMASSNDIVLIAGKGHETYQILKDSTIHFDDKEKARQAI 489
>gi|402557190|ref|YP_006598461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus FRI-35]
gi|401798400|gb|AFQ12259.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus FRI-35]
Length = 492
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/350 (38%), Positives = 201/350 (57%), Gaps = 24/350 (6%)
Query: 33 VQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNA 92
+Q + M + + VME +S GL + R +F IAVFTNLT+DH+D+HGT EY++
Sbjct: 160 LQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFHEYKHV 219
Query: 93 KAKLFSRMVD----PERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFE 148
K LFSR+ + ++ V+N DDP+ F + V+T+ + N+ ADV
Sbjct: 220 KGLLFSRLGNDLSTTDKKIAVLNADDPSVEYF--KKITSAEVITYGIHNR-ADVQAKNIT 276
Query: 149 LSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVP 208
LS + LV++ +G +E+S L+GR N+YN LAA+ V + G PL +I + + ++
Sbjct: 277 LSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIE 336
Query: 209 GRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTK 268
GR E+IDE Q F VIVDYAHTPDAL +L ++ E + ++ITV GC G+ D KR +M
Sbjct: 337 GRMEIIDENQDFLVIVDYAHTPDALENVLSTISEFSTGKVITVFGCGGDRDTKKRSIMGG 396
Query: 269 IATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLH 328
IA SD +TSDNP +EDP I+ D+ G +L+ +Y +
Sbjct: 397 IAGSYSDFVFITSDNPRSEDPQAIMKDIEKG-------FLQNNNLNYKVEVD-------- 441
Query: 329 DIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
R +A+ A+ M D+V++AGKGHETYQI FDD+E++R+A+
Sbjct: 442 --RELAITHAINMASSNDIVLIAGKGHETYQILKGSTIHFDDKEKARQAI 489
>gi|218780976|ref|YP_002432294.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfatibacillum
alkenivorans AK-01]
gi|218762360|gb|ACL04826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum
alkenivorans AK-01]
Length = 531
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 215/382 (56%), Gaps = 12/382 (3%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +VS G K ES TTP+++ +Q +A+M+ G ++E SSH L R
Sbjct: 136 GCKVGIVGTVSSRWPGHEK-ESSVTTPESLELQETLARMVDAGVTHAIIEVSSHALTQSR 194
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV---DPERHRKVVNIDDPNAT 118
+ FD VFTN+T+DH+D+H E Y AK LF ++ E V+N+DDP
Sbjct: 195 PAFCQFDAGVFTNITQDHLDYHKDMESYFQAKRILFDDLLAASTKENKTAVINLDDPQGA 254
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
+ PV+ + + + + + + + ++ TP G L S +GRHN+Y
Sbjct: 255 VLCRE--VKTPVLCTGL-TEGSSIRSIDVKAGADGLKGVMETPAGELVFESPAVGRHNLY 311
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N+++A VG+A G LE++ G+ VPGR E ++ V VDYAHTPDAL +L+
Sbjct: 312 NLMSAAGVGLAFGLSLEEVEMGLNAAVNVPGRLEKVENGLDRHVFVDYAHTPDALENVLE 371
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
++R ++ +IITV GC G+ D+GKRP M A SD+ ++TSDNP +EDP I+DD+L
Sbjct: 372 ALRRVSKAKIITVFGCGGDRDKGKRPKMGAAAARHSDLVVVTSDNPRSEDPEAIIDDILP 431
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI-RRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+ + L N Y + + F+ + RR A+ A+ GD+V++AGKGHET
Sbjct: 432 GISGEGAQRL----NASYCMMCSRKSAFMVEPDRRKAILTAIMSSGPGDLVLIAGKGHET 487
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI + + FDDR E+R AL+
Sbjct: 488 YQIVKNGRFAFDDRVEARNALE 509
>gi|313673688|ref|YP_004051799.1| UDP-N-acetylmuramyl tripeptide synthetase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940444|gb|ADR19636.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 484
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/377 (37%), Positives = 203/377 (53%), Gaps = 28/377 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +T + + Y I D K+E+ TTP + ++AK + G AV ME SSH L R
Sbjct: 129 GYKTIRIGTTEYVIV-DEKIEANNTTPGIYDIFEMVAKGVKKGASAVCMEVSSHALDQDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
++FD+AVFTNLT DH+D+H T E Y +K KLF++ +NID
Sbjct: 188 VYGLNFDVAVFTNLTGDHLDYHKTMEHYYQSKKKLFTK---EYSKNAAINIDYDYGKRLY 244
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ V + ++ K DV + SL VN ++ ++S L+GRHN+ NIL
Sbjct: 245 NE----VEIAKYSFSKGKGDVGVVDVSYSLDGINCRVNIGDEVISLNSHLVGRHNLENIL 300
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AV +G +DI+RG+E+ VPGR E ++ A+ VDYAHT DAL +L++++
Sbjct: 301 GAVTATYILGISKDDIIRGVEQFKNVPGRLEKFEKNGAY-FFVDYAHTDDALKNVLEALK 359
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
R+ITV GC G+ DR KRP M K+A SD+ I+TSDNP EDP I+D++L G
Sbjct: 360 GFKKGRLITVFGCGGDRDRTKRPRMAKVAEVYSDIVIVTSDNPRTEDPNAIIDEILTG-- 417
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
N ++ + RR+A++ A + GD+V++AGKGHE YQI
Sbjct: 418 -----------------FENRSKVLVDPDRRIAIKKACDEAKAGDIVLIAGKGHEDYQII 460
Query: 362 GDKKEFFDDREESREAL 378
G K FDDREE + L
Sbjct: 461 GKTKYHFDDREEVAKNL 477
>gi|434400311|ref|YP_007134315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Stanieria cyanosphaera PCC 7437]
gi|428271408|gb|AFZ37349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Stanieria cyanosphaera PCC 7437]
Length = 501
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 200/355 (56%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q+ +A+ + G + VME SSH LA GR F++AVFTNLT+DH+D+H
Sbjct: 160 TTPFAVELQSQLAEAVEAGNKYAVMEVSSHALAQGRVKNCAFEVAVFTNLTQDHLDYHRD 219
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y KA LFS P + ++N+DD I + + + V ++++ + AD+
Sbjct: 220 MEDYFRCKALLFSPEYLP--GKAIINLDDIYGERLIKKLDRN-RVWSYSVSDSSADLCTS 276
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+++TP G + SS L+G+ N+ N+LAAV + VG L I + + +
Sbjct: 277 NLNYQPNGVSGILHTPVGEIPFSSPLVGQFNLSNLLAAVGAALNVGVDLATIAEHLPQFN 336
Query: 206 AVPGRCELI--DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E + + Q VIVDYAHTPD+L LL + R R+I V GC G+ DR KR
Sbjct: 337 GVPGRMERVQFSDRQDVSVIVDYAHTPDSLENLLTAARPFIKGRMICVFGCGGDRDRTKR 396
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM KIA D +DV I+TSDNP EDP IL D+LAG+ P
Sbjct: 397 PLMGKIAADLADVVIVTSDNPRTEDPQRILADILAGI-------------------PESA 437
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ R A+ A++ + GD V++AGKGHE YQI G +K FDDRE++REAL
Sbjct: 438 NSIVVSDRASAIYLAISDAQPGDGVLIAGKGHEDYQILGTEKIHFDDREQAREAL 492
>gi|443327872|ref|ZP_21056479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xenococcus sp. PCC 7305]
gi|442792483|gb|ELS01963.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xenococcus sp. PCC 7305]
Length = 496
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 205/358 (57%), Gaps = 28/358 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +A + G++ ME SSH LA GR F+IAVFTNLT+DH+D+H
Sbjct: 159 TTPFAADLQAQLASAVAAGSQYAAMEVSSHALAQGRVKNCGFEIAVFTNLTQDHLDYHEN 218
Query: 86 EEEYRNAKAKLFSRMVDPE--RHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVH 143
E+Y AKA LFS PE + + ++N+DDP I Q P+ V ++++ N +AD++
Sbjct: 219 MEDYFQAKALLFS----PEYLQGKAIINLDDPYGQRLIEQLAPE-KVWSYSISNPEADLY 273
Query: 144 PLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEE 203
++++P G + +S L+G+ N+ N+LAAV + + L + + +
Sbjct: 274 TSDLNYQANGVSGILHSPAGEIPFTSPLVGQFNLANLLAAVGAVLHLEVKLSVVAATLPQ 333
Query: 204 VDAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRG 261
VPGR E I + Q VIVDYAHTPD+L LL + R + I V GC G+ DR
Sbjct: 334 FSGVPGRMERVQIQDTQDISVIVDYAHTPDSLENLLKAARPFVSGKTICVFGCGGDRDRT 393
Query: 262 KRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPN 321
KRPLM +IA + +D+ ++TSDNP E+P IL+D++AG+ T++ PL
Sbjct: 394 KRPLMGQIAAELADMVVVTSDNPRTENPQKILEDVVAGIPETIE------------PLVI 441
Query: 322 GHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
G R A+ A++ GD V++AGKGHE YQI G +K FDDRE++REAL+
Sbjct: 442 GD-------RAAAIATAISQAVSGDGVLIAGKGHEDYQILGTEKIHFDDREQAREALK 492
>gi|374602396|ref|ZP_09675389.1| UDP-N-acetylmuramyl tripeptide synthetase [Paenibacillus
dendritiformis C454]
gi|374391998|gb|EHQ63327.1| UDP-N-acetylmuramyl tripeptide synthetase [Paenibacillus
dendritiformis C454]
Length = 498
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/384 (38%), Positives = 215/384 (55%), Gaps = 25/384 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +G++ ++ G L TTP+A+ +Q + M G EAV ME SSH L GR
Sbjct: 130 GRTSGVIGTIEMRYDG-RTLPMSGTTPNALELQRSLRDMADCGVEAVAMEVSSHALDQGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM------VDPERHRKVVNIDDP 115
F AVFTNLT+DH+D+H T E YR+AK LFSR+ + ER V+N DDP
Sbjct: 189 VEGCRFRTAVFTNLTQDHLDYHETMESYRDAKGLLFSRLGNTFSEQEAERSYAVLNADDP 248
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+ F + +T+ + + AD+ ++ T V+T G ++ ++G+
Sbjct: 249 ASAHFAKLTTAET--LTYGL-SASADIRAEDIRMNGKGTSFRVHTFRGSADVQLRMVGKF 305
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+ N LAA+AVG+ G L+DI +E V V GR E ++ Q + VIVDYAHTPD L
Sbjct: 306 NVCNALAAIAVGLIEGIALDDICASLEAVPGVAGRVEAVEAGQPYTVIVDYAHTPDGLEN 365
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L SV+E A R+I+V GC G+ DR KRP+M +I+ +D +I+TSDNP EDP IL+D
Sbjct: 366 VLQSVKEFAEGRVISVFGCGGDRDRTKRPIMGQISARYADYSIITSDNPRTEDPELILED 425
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ G+ T E + D Y + + RR A+ A+ + D+V++AGKGH
Sbjct: 426 IERGL--TEMEVSR----DRYECVVD---------RRAAIAKAIELASPHDVVLIAGKGH 470
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQI G FDDR ++EA++
Sbjct: 471 ETYQIIGRDTFDFDDRLVAKEAIR 494
>gi|427706906|ref|YP_007049283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Nostoc sp. PCC 7107]
gi|427359411|gb|AFY42133.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Nostoc sp. PCC 7107]
Length = 501
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 148/357 (41%), Positives = 202/357 (56%), Gaps = 28/357 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A ++ G E ME SSH LA GR F++ VFTNLT+DH+D+H
Sbjct: 160 TTPFAVELQQQLAAAVNAGCEFGTMEVSSHALAQGRVLGCPFEVGVFTNLTQDHLDYHSD 219
Query: 86 EEEYRNAKAKLFSRMVDPE--RHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVH 143
E+Y AKA LFS PE + + V+N DD IA+ P V ++++ ++ AD+
Sbjct: 220 MEDYFAAKALLFS----PEYLKGKAVINADDSYGKQLIAR-LPSEQVWSYSVSDRHADLW 274
Query: 144 PLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEE 203
+++TP G + S L+G++N+ N+LAAV + +G LE I I +
Sbjct: 275 MSDLNYQPNGVSGVLHTPKGEVAFRSPLVGQYNLENVLAAVGAVLHLGLDLELIAAAISD 334
Query: 204 VDAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRG 261
VPGR E I+ Q VIVDYAHTPD+L LL + R P ++I V GC G+ DR
Sbjct: 335 FPGVPGRMERVQIEPNQEISVIVDYAHTPDSLENLLKAARPFIPGKMICVFGCGGDRDRT 394
Query: 262 KRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPN 321
KRP M KIA + +DV ++TSDNP EDP IL D+LAG+ T+Q +
Sbjct: 395 KRPKMGKIAAELADVAVITSDNPRTEDPEKILQDVLAGIPDTVQPTV------------- 441
Query: 322 GHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ D R A+R A+ GD V++AGKGHE YQI G +K FDDRE +REAL
Sbjct: 442 -----ICD-RATAIRTAILQALPGDGVLLAGKGHEDYQILGTEKIHFDDREHAREAL 492
>gi|218903725|ref|YP_002451559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus AH820]
gi|218539502|gb|ACK91900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus AH820]
Length = 493
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 213/382 (55%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ + + G + T + +Q + M + + VME +S GL + R
Sbjct: 130 GYHTGLMGNNGVKV-GSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMER 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD----PERHRKVVNIDDPNA 117
+F IAVFTNLT+DH+D+HGT +EY++ K+ LF+R+ + ++ V+N DDP+
Sbjct: 189 VKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNDLSTTDKKIAVLNADDPSV 248
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + V+T+ + N ADV LS + LV++ +G +E+S L+GR N+
Sbjct: 249 EYF--KKITSAEVITYGIHNG-ADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNV 305
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ V + G PL +I + + ++ GR E+IDE Q F VIVDYAHTPDAL +L
Sbjct: 306 YNALAAITVALVEGIPLTNISDSLSTLKSIEGRMEIIDENQDFLVIVDYAHTPDALENVL 365
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E + ++ITV GC G+ D KR +M IA SD +TSDNP +EDP I D+
Sbjct: 366 STISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAITKDIE 425
Query: 298 AGVGWTMQEYLKYG-ENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
G++ L Y E D R +A+ A+ M D+V++AGKGHE
Sbjct: 426 K--GFSQNNNLNYKVEVD----------------RELAINHAINMASSNDIVLIAGKGHE 467
Query: 357 TYQIEGDKKEFFDDREESREAL 378
TYQI D FDD+E++R+A+
Sbjct: 468 TYQILKDSTIHFDDKEKARQAI 489
>gi|403379026|ref|ZP_10921083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus sp. JC66]
Length = 495
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 151/387 (39%), Positives = 212/387 (54%), Gaps = 31/387 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ I G TT DA +Q +M G VME SSH L +GR
Sbjct: 127 GCSTGLMGTIEMKI-GGQIYPVLNTTQDAADLQKSFRQMKDEGENYCVMEVSSHALEMGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM------VDPERHRKVVNIDDP 115
V F A+FTNLT+DH+D+HGT E YR AK LFSR+ + ER V+N DDP
Sbjct: 186 VKGVHFRTALFTNLTQDHLDYHGTMERYREAKGLLFSRLGNTYASSEAERSYAVLNADDP 245
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
A+ + A+ V+T+ + N +ADV ++ T ++T G +++ L+G+
Sbjct: 246 -ASEYFAR-MTSAQVITYGI-NNEADVRAHNIRITSQGTAFTLSTFKGEQDVNLKLIGKF 302
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN L AVA + PLE+IV +E +V GR E++DE Q F V+VDYAHTPD L
Sbjct: 303 NVYNALGAVAAALLENIPLEEIVSSLERTGSVQGRMEVVDEGQPFLVLVDYAHTPDGLEN 362
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L ++ E A +I +V GC G+ DR KRP M +IA SD +TSDNP +E+P ILDD
Sbjct: 363 ALSTISEFAEGQIFSVFGCGGDRDRTKRPQMGEIAARYSDYVFVTSDNPRSEEPEAILDD 422
Query: 296 MLAGV---GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ G+ G T +Y K + R A+R A+ D++++AG
Sbjct: 423 IEPGLLEAGLTADQYEKISD------------------REEAIRRAIDKAGPKDVILIAG 464
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHETYQI FDDRE +R+A++
Sbjct: 465 KGHETYQIINGTTRHFDDREAARQAIR 491
>gi|354558753|ref|ZP_08978007.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfitobacterium metallireducens DSM 15288]
gi|353545815|gb|EHC15265.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfitobacterium metallireducens DSM 15288]
Length = 490
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 205/379 (54%), Gaps = 24/379 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I G ++ RTTP+A+ +Q L+A M+ + VME SSH L LGR
Sbjct: 129 GKKVGLVGTLGSRIDG-REIPGSRTTPEAIELQKLLATMVDEKVDLAVMEVSSHALDLGR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
+++D A+FTNLT+DH+D+H T E Y AKA+LF + ++ + V+N DDP A +
Sbjct: 188 VQGIEYDAAIFTNLTQDHLDYHKTMERYLQAKARLFKELQGTKQPKIGVINGDDPAAKTL 247
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
P VT+ + + D +LS Q++V+ EI G ++YN
Sbjct: 248 CEVSV--APTVTYGVHAENLDYRAENIQLSAHGIQMIVSFHGKFQEIHYSTPGMFSVYNA 305
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA A + G + + E+ VPGR E + Q F VIVDYAHTPD L +L +
Sbjct: 306 LAAFAWAVESGRDPQLAADALAEIHGVPGRFENVRRGQPFPVIVDYAHTPDGLENVLKTA 365
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
RE R+ITV GC G+ D+GKRP M +I+ SD I+TSDNP E+P I+ D+L GV
Sbjct: 366 REFTQGRLITVFGCGGDRDKGKRPQMGEISARLSDFVIVTSDNPRTEEPEQIIKDILVGV 425
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
Y + N RR A+ A + GD V++AGKGHE YQI
Sbjct: 426 SGV-----------EYTTMVN---------RREAIEMACRRAKPGDTVLIAGKGHEDYQI 465
Query: 361 EGDKKEFFDDREESREALQ 379
G + FDDRE +++AL+
Sbjct: 466 IGKETFPFDDREVAKDALR 484
>gi|402298667|ref|ZP_10818341.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus alcalophilus ATCC 27647]
gi|401726134|gb|EJS99380.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus alcalophilus ATCC 27647]
Length = 487
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/378 (37%), Positives = 215/378 (56%), Gaps = 27/378 (7%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ Y G+ +++ TTP+++ +Q KM+ E ME SSH L GR
Sbjct: 131 TGVIGTM-YAKVGEEIVKTKNTTPESLTLQQTFHKMVEANVETAFMEVSSHALDYGRVHG 189
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP-ERHRKVVNIDDPNATSFIAQ 123
DF++AVFTNLT DH+D+H T E Y AK LF+++ + E ++N DDP + +
Sbjct: 190 CDFNVAVFTNLTPDHLDYHQTMEAYLFAKGLLFAQLGNAYENKFAILNADDPASKKLMKM 249
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
+ ++ +T+ ++N+ A + LS T + + I L+G+ N+YN+LAA
Sbjct: 250 TSANL--LTYGIDNE-ASITAQNIRLSAKGTSFDLFIFNQSYAIDVSLIGKFNVYNLLAA 306
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELI--DEEQAFGVIVDYAHTPDALSRLLDSVR 241
VA G P+E IVR + V + GR E + E+Q F V+VDYAHT D+L +L++V
Sbjct: 307 VASSYVSGLPIETIVRSLATVKGISGRFETVRASEKQDFTVVVDYAHTSDSLKNVLETVN 366
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
ELAP I VVGC G+ DR KRP+M +IAT + I TSDNP +EDP IL DM + +
Sbjct: 367 ELAPSDIKVVVGCGGDRDRTKRPVMAQIATKFATEAIFTSDNPRSEDPKQILIDMTSSLK 426
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
T +++ + R+ A+ A+A ++GD++V+AGKGHETYQ
Sbjct: 427 DT------------------NYQVIVD--RKEAIEQAIASAKKGDIIVIAGKGHETYQQF 466
Query: 362 GDKKEFFDDREESREALQ 379
DK FDDRE + +A++
Sbjct: 467 ADKTIHFDDREVAFDAIK 484
>gi|421527072|ref|ZP_15973677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
[Fusobacterium nucleatum ChDC F128]
gi|402256801|gb|EJU07278.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
[Fusobacterium nucleatum ChDC F128]
Length = 485
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/373 (37%), Positives = 209/373 (56%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y I GD E+ TTP+++ + + K L E VVME SSH L +GR VDF
Sbjct: 131 IGTIEYKI-GDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVEVVDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+F+NLT+DH+D+H T E Y AK KLF ++ D + V+NIDD + D
Sbjct: 190 DYALFSNLTQDHLDYHITMENYFQAKRKLFLKLKDI--NNSVINIDDKYGKRLYDEFIVD 247
Query: 128 -VPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
++++ ++ + L + + + + I ++ LLG N+YN L A+ +
Sbjct: 248 NSEIISYGIDGGDLEGDYLD------DGYIDIKYKNQIEKVKFALLGDFNLYNTLGAIGI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPR 246
+ +G +E+I++ + + A PGR E +D Q + VIVDYAHTPDAL ++ + R + R
Sbjct: 302 ALKIGISMEEILKRVSTIKAAPGRFEALDCGQDYKVIVDYAHTPDALVNVIVAARNIKNR 361
Query: 247 -RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
R+IT+ GC G+ DR KRP+M K A D SD+ ILTSDNP E P I DD+ G
Sbjct: 362 NRVITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPDQIFDDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
++K +DY F R A++ AV M E+ D++++ GKGHETY I G KK
Sbjct: 416 -FVK--SDDY----------FFEPDREKAIKLAVNMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|374296732|ref|YP_005046923.1| UDP-N-acetylmuramyl tripeptide synthetase [Clostridium clariflavum
DSM 19732]
gi|359826226|gb|AEV68999.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium clariflavum
DSM 19732]
Length = 484
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/377 (37%), Positives = 211/377 (55%), Gaps = 28/377 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ I GD L + RTTP+++ +Q L +M+ + VVME SSH L L R
Sbjct: 129 GHKTGLIGTICNKI-GDEVLPTDRTTPESLDLQELFGEMVEKKVDGVVMEVSSHALELHR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
S +FDI VFTNL+RDH+DFH T E Y AK KLF + +VNID +
Sbjct: 188 VSCSEFDIGVFTNLSRDHLDFHKTFENYLAAKIKLFKMC-----KKGLVNIDSEYGRQVV 242
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
N + V TF ++N AD+ + V+TP EI + G+ ++YN L
Sbjct: 243 E--NAECEVYTFGIDND-ADIKATDIVKKQDSVEFKVHTPWFNGEIHVNIPGKFSVYNAL 299
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA+ +G PLE I G++ V VPGR E++ + +I+DYAH+PD+L +L +V+
Sbjct: 300 AAIGSCALMGIPLEYIKEGLKNV-TVPGRAEVVPTGTDYTIIIDYAHSPDSLENILTTVK 358
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
AP R+I+V GC G+ D+ KRP+M +I+ +D T++TSDNP EDP I+ D+ G+
Sbjct: 359 GYAPARVISVFGCGGDRDKTKRPIMGEISGKYADFTVITSDNPRTEDPSAIIRDIEEGIK 418
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
T Y+ + RR A++ A+ + + D++V+AGKGHETY +
Sbjct: 419 KTNAAYITIVD------------------RREAIKYAMQIAKPKDIIVLAGKGHETYIML 460
Query: 362 GDKKEFFDDREESREAL 378
DK FD+RE RE L
Sbjct: 461 NDKTIHFDEREVVREIL 477
>gi|357008358|ref|ZP_09073357.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus elgii B69]
Length = 497
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 208/387 (53%), Gaps = 29/387 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ I T +A+ +Q ++ M GT+ +ME SSHGL +GR
Sbjct: 127 GFQTGLMGNIHVKIGAVRHPNEKNNTQEAIELQRILRDMADAGTDYCIMEVSSHGLDMGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP------ERHRKVVNIDDP 115
+ F +FTNLT+DH+D+H T E YR AK LFSR+ + +R V+N DD
Sbjct: 187 VNGCQFRTGLFTNLTQDHLDYHQTMERYREAKGLLFSRLGNEFAPTADQRQYAVLNGDD- 245
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+A+ + A+ P +V + ++N ADV E++ T+ T G E++ L+GR
Sbjct: 246 SASDYFAKHTPAQTIV-YGIDNPAADVRAENIEITAKGTKFRCVTYRGTAEVTMRLVGRF 304
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN L A+A +A G LE IV + + +V GR E++D Q V+VDYAHTPD L
Sbjct: 305 NVYNTLGAIAAALAEGIELERIVASLGSMTSVEGRMEIVDAGQESLVLVDYAHTPDGLEN 364
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L ++R+ A ++ V GC G+ DR KRPLM +A SD +TSDNP E+P IL D
Sbjct: 365 ALSTIRQFAEGQVYCVFGCGGDRDRAKRPLMGGVAAKYSDYVFVTSDNPRTEEPESILRD 424
Query: 296 MLAGV---GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ G+ GW + Y + RR A++ A+A D+V++AG
Sbjct: 425 IEPGLVEAGWDKERYELIAD------------------RRQAIQKAIARATSKDVVLIAG 466
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHETYQ K FDDR + A++
Sbjct: 467 KGHETYQDIQGVKHPFDDRLVAENAIR 493
>gi|401564202|ref|ZP_10805114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. FOBRC6]
gi|400189052|gb|EJO23169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. FOBRC6]
Length = 496
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 150/384 (39%), Positives = 210/384 (54%), Gaps = 30/384 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ + D + TTPD +++Q L+A+M G +AVVME SSH L GR
Sbjct: 133 GKRVGLIGTIQVMME-DEVFPTANTTPDVIVMQQLLAEMRARGMDAVVMEVSSHALDQGR 191
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLF---SRMVDPERHRKVVNIDDPNAT 118
+ ++FD AVFTNLT+DH+D+HGT E Y AKA+LF S + V+N DD A
Sbjct: 192 VAGIEFDTAVFTNLTQDHLDYHGTMENYVRAKARLFDLVSEVGTKVGKTAVLNADD--AA 249
Query: 119 SFIAQGNPDVPVVTFAMENKK----ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGR 174
S + + PV+++ +E+K DVH + + L LV+ +++ + G
Sbjct: 250 SVTMRAHTRCPVISYGVESKADLAARDVHLAQDGMEL----TLVHGEAEPVKLHISITGL 305
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+YN+LAA +A DI + VPGR EL+ Q F VIVDYAHTPD +
Sbjct: 306 FNVYNVLAATGAALAEKIGAADIAAALRAFTGVPGRFELVRAGQDFSVIVDYAHTPDGME 365
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L + R + RII V GC G+ DR KRP+M +I + +D+ +LTSDNP EDP ILD
Sbjct: 366 NVLRTARAVTAGRIIAVFGCGGDRDRTKRPIMGRIGAELADIVVLTSDNPRTEDPAAILD 425
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
++ GV L Y L + RR A+ A+ + GD VV+ GKG
Sbjct: 426 EVETGV-------LPVIGAKPYEKLVD---------RRTAIFHAIGRAKAGDTVVILGKG 469
Query: 355 HETYQIEGDKKEFFDDREESREAL 378
HE YQI D FDDRE +REA+
Sbjct: 470 HENYQILKDGTIHFDDRETAREAI 493
>gi|428222986|ref|YP_007107156.1| UDP-N-acetylmuramyl tripeptide synthetase [Synechococcus sp. PCC
7502]
gi|427996326|gb|AFY75021.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. PCC
7502]
Length = 499
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 146/378 (38%), Positives = 206/378 (54%), Gaps = 25/378 (6%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ G + S TTP AV +Q + + E +VME SSH LA R
Sbjct: 142 TGLMGTLYTRWQGYEHI-STHTTPFAVDLQAQFKQAVDQNQEVMVMEVSSHALAQRRVWT 200
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
F ++VFTNLT+DH+D+H E+Y AKA LF+ D + + V+N+DD IA
Sbjct: 201 CPFGVSVFTNLTQDHLDYHLNLEDYFQAKALLFTP--DYLKGKAVINLDDAYGVRLIADC 258
Query: 125 NP-DVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
PV T+++ N +AD S ++TP G + SS L+G N+ N+LAA
Sbjct: 259 RSRKQPVWTYSLTNSEADFFTDNLTYSSNGVTATLHTPLGAIAFSSPLVGSFNLANVLAA 318
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVR 241
+A + +G L +IV + + +VPGR E I E+Q V+VDYAHTPD+L LL ++R
Sbjct: 319 IATAVELGISLREIVERLPKFKSVPGRVEQVQISEDQDITVVVDYAHTPDSLENLLKAMR 378
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
R +I V GC G+ DR KRP+M +IA +D +TSDNP E+ IL D+L GV
Sbjct: 379 PFTKRELICVFGCGGDRDRTKRPIMGEIAARLADRVYITSDNPRTENAELILQDILKGV- 437
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
P + RR+ ++ A+A E GD V++AGKGHE YQI
Sbjct: 438 ------------------PEQVNAKVEIDRRICIKEAIAKAEAGDTVLIAGKGHEDYQII 479
Query: 362 GDKKEFFDDREESREALQ 379
G +K FDDREE++ ALQ
Sbjct: 480 GTEKIHFDDREEAKIALQ 497
>gi|170076754|ref|YP_001733392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Synechococcus sp. PCC 7002]
gi|169884423|gb|ACA98136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
(UDP-N-acetylmuramyl-tripeptide synthetase)
(Meso-diaminopimelate-adding enzyme)
(UDP-MurNAc-tripeptide synthetase) [Synechococcus sp.
PCC 7002]
Length = 499
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 140/376 (37%), Positives = 209/376 (55%), Gaps = 26/376 (6%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
T ++ ++ G K+ + TTP A+ +Q A L G VME SSH L R
Sbjct: 140 TALIGTLYTRWPGYEKIAT-HTTPFAIDLQKNFAAALEAGNTHAVMEVSSHALHQNRVKG 198
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
FD+AVFTNLT+DH+D+H T E+Y AKA LF+ + R VVN+D+P +
Sbjct: 199 CQFDVAVFTNLTQDHLDYHPTMEDYFQAKALLFNE--EYCHGRAVVNLDNPYGDRLAHKL 256
Query: 125 NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAV 184
+++++ AD++ + + + + TP G +E +S L+G+ N+ N++AA+
Sbjct: 257 GEKA--WGYSLQDAAADLYMDRLIYTATGVEGRLKTPMGTVEFTSPLVGQFNLENVMAAI 314
Query: 185 AVGIAVGAPLEDIVRGIEEVDAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRE 242
G+A+G L ++ + + VPGR E ++ E+Q VIVDYAHTPD+L LL + R
Sbjct: 315 GAGLALGLDLNQMITCLPQFQGVPGRMERVIVAEDQDISVIVDYAHTPDSLENLLKASRP 374
Query: 243 LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGW 302
+++I V GC G+ DR KRPLM KIA +SD ++TSDNP EDP IL D++ G+
Sbjct: 375 FIAKKMICVFGCGGDRDRTKRPLMGKIAATQSDWAVVTSDNPRTEDPKQILADVVEGI-- 432
Query: 303 TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEG 362
P + + R A++ A+ + GD V++AGKGHE YQI G
Sbjct: 433 -----------------PENIQFLVEADRATAIQRAILEAQPGDGVLIAGKGHEDYQILG 475
Query: 363 DKKEFFDDREESREAL 378
+K FDDREE+R+AL
Sbjct: 476 TEKIHFDDREEARKAL 491
>gi|146295954|ref|YP_001179725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409530|gb|ABP66534.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 488
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 149/382 (39%), Positives = 219/382 (57%), Gaps = 34/382 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V I G ++E+ TTP++ +Q L +M ++VVME SSH L L R
Sbjct: 133 GHKVGLIGTVKNMI-GQKEIEAKHTTPESYDLQKLFFEMKKENVDSVVMEVSSHSLELHR 191
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
DFD+ VFTNLT+DH+DFHGT E Y AK KLF ++VVN+DD I
Sbjct: 192 VDCCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFEM-----SKKRVVNVDDEWGRKII 246
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSL----FETQVLVNTPHGILEISSGLLGRHNI 177
+ PD VT+ + N KADV + +L + FE + L N +++ + G ++
Sbjct: 247 -RIYPDS--VTYGI-NSKADVCAMSVKLYVNKNQFELRQLDNDNKE--QVTLNIPGIFSV 300
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA + A+G L+ I G+E V A+PGR E+++ F +++DYAHTPD L L+
Sbjct: 301 YNALAAASCAYALGIDLKTIKAGLESVKAIPGRFEIVESNDKFTIVIDYAHTPDGLLNLM 360
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+V E+A R + + GC G+ DR KRP+M +IA +D I+TSDNP EDP+ I++D+L
Sbjct: 361 KTVDEVAKGRKVLLFGCGGDRDRTKRPIMGEIAGKMADFVIVTSDNPRTEDPIKIIEDIL 420
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+ T EY+ +P+ R A++ A+ +E D +V+AGKGHET
Sbjct: 421 VGLQKTNAEYV---------VIPD---------RFEAIKYAIKNAKENDFIVLAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI D+ FD+RE R L+
Sbjct: 463 YQILKDRTIHFDEREVVRSILE 484
>gi|254411409|ref|ZP_05025186.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
[Coleofasciculus chthonoplastes PCC 7420]
gi|196181910|gb|EDX76897.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
[Coleofasciculus chthonoplastes PCC 7420]
Length = 501
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 141/356 (39%), Positives = 204/356 (57%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP V +Q + + G E VME SSH LA GR +FD+AVFTNLT+DH+DFH
Sbjct: 164 TTPFPVELQQQLHSAVAAGCELGVMEVSSHALAQGRVLGCEFDVAVFTNLTQDHLDFHRD 223
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKA LF+ D + ++N DDP I + D +++++N AD++
Sbjct: 224 MEDYFAAKALLFNS--DYLHGKAIINADDPYGKRLIEKVGRDR-TWSYSVQNPSADLYTS 280
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+L + ++TP G + +S L+G++N+ N+LAAV + +G L+ +V + +
Sbjct: 281 NLTYTLIGVKGTLHTPVGDVTFNSPLVGQYNLSNVLAAVGAVLNLGLDLKTVVTTLNQFP 340
Query: 206 AVPGRCELID--EEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E + +Q VIVDYAHTPD+L LL + R R+I V GC G+ DR KR
Sbjct: 341 GVPGRMERVQLKPDQDISVIVDYAHTPDSLENLLKAARPFIQGRMICVFGCGGDRDRTKR 400
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KI + +DV ++TSDNP EDP I+ D+L G+ T++
Sbjct: 401 PKMGKIGAELADVAVVTSDNPRTEDPERIIQDILEGIPATVEP----------------- 443
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+ + D R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++REAL+
Sbjct: 444 -IVMSD-RATAIRTAILDAKPGDGVLIAGKGHEDYQILGTEKIHFDDREQAREALE 497
>gi|326333497|ref|ZP_08199738.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Nocardioidaceae bacterium Broad-1]
gi|325948697|gb|EGD40796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Nocardioidaceae bacterium Broad-1]
Length = 512
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 152/382 (39%), Positives = 209/382 (54%), Gaps = 30/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ +V I G +++P TTP+A + L A+M+ GTEA ME SSH L +GR
Sbjct: 153 GHRAGVIGTVGTRI-GGRDVKTPLTTPEAPDLHGLFARMVEEGTEACAMEVSSHALVMGR 211
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
V FD+AVF NL RDH+DFH T E+Y AKA LF+ PER +VNIDD +
Sbjct: 212 VDGVVFDVAVFLNLGRDHLDFHETVEDYYAAKADLFT----PERAELGIVNIDDEHGRRL 267
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI-LEISSGLLGRHNIYN 179
A+ +P++T+A+ + AD EL + V+ P G+ +S L G +N+ N
Sbjct: 268 AAEAT--IPILTYALHDDTADWRATDIELRPDGSSFTVHGPDGLSFPAASPLAGDYNVSN 325
Query: 180 ILAAVA-VGIAVG--APLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
LAA+A + A G + D+ + + VPGR E IDE Q F V+VDYAH PDA+
Sbjct: 326 TLAALASIHHAYGDETVVRDVATALAKGSGVPGRLERIDEGQPFTVVVDYAHKPDAVEAA 385
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L ++R L R+I V+G G+ D GKRP+M +I+ +D I+T DNP EDP I +
Sbjct: 386 LGTLRPLTESRLIVVIGAGGDRDTGKRPIMGEISARLADHVIVTDDNPRTEDPASIRRQV 445
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
LAG + G+ RR A+ A+ + + GD+VVVAGKGHE
Sbjct: 446 LAGTTGGSASVEEIGD------------------RRAAIERAIGLAQPGDIVVVAGKGHE 487
Query: 357 TYQIEGDKKEFFDDREESREAL 378
T Q FDDR+ REAL
Sbjct: 488 TGQEINGVTHPFDDRQVVREAL 509
>gi|326204088|ref|ZP_08193949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
papyrosolvens DSM 2782]
gi|325985855|gb|EGD46690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
papyrosolvens DSM 2782]
Length = 487
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 143/382 (37%), Positives = 225/382 (58%), Gaps = 35/382 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ +V+ I G+ L + RTTP++ +Q+L M+ N ++ VME SS GL L R
Sbjct: 129 GHNMGLIGTVANLI-GNQVLYTSRTTPESYDLQSLFNDMIDNKVDSAVMEVSSQGLELHR 187
Query: 62 CSEVDFDIAVFTNLTRDHM--DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
++ DFDI VFTN +RDH+ H T EEY NAKAKLF +M + + V+NID +
Sbjct: 188 VAKCDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLF-KMCN----KAVINIDSEHGRK 242
Query: 120 F--IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+A+G V+T+ + ++ +D+ T +N+P G ++I + L G NI
Sbjct: 243 MAELAEG----KVLTYGLSSR-SDIWASDVIKKTGHTFFKLNSPWGSIDIETDLQGEFNI 297
Query: 178 YNILAAVAVGIAV-GAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
YN LAA+ + G LE + +G+ +V VPGR E + + + V++DYAHTPD+L ++
Sbjct: 298 YNALAAIGSCCLIPGITLEHVKKGLTKV-TVPGRMESVKTDGNYSVLIDYAHTPDSLEQV 356
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V+E A R++++ GC G+ D+GKRP M +I+ + +D TI+TSDNP E+P I++D+
Sbjct: 357 LKTVKEFAHGRVVSLFGCGGDRDKGKRPAMGEISGNIADFTIITSDNPRTENPEQIIEDI 416
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG+ T +Y+K + RR A++ A+ ++GD++++AGKGHE
Sbjct: 417 EAGIKNTNGKYIKITD------------------RRQAIKFALENAQDGDIIILAGKGHE 458
Query: 357 TYQIEGDKKEFFDDREESREAL 378
TYQ +K FD+RE E L
Sbjct: 459 TYQQFAEKTIHFDEREVVNELL 480
>gi|397905153|ref|ZP_10506024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Caloramator australicus RC3]
gi|397161802|emb|CCJ33358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Caloramator australicus RC3]
Length = 480
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/380 (36%), Positives = 215/380 (56%), Gaps = 31/380 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ Y I GD +E+ RTTP+++ +Q L +M+ N VME SSH L L R
Sbjct: 128 GQKIGLIGTI-YNIIGDKIIEAKRTTPESLDLQCLFKEMVDNNCAYCVMEVSSHSLELER 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
VDF+ +FTNLT+DH+DFH T E Y AK KLF R + ++NIDD +
Sbjct: 187 VYGVDFEAGIFTNLTQDHLDFHKTMENYFKAKLKLFERAKNA-----IINIDDDYGKEAL 241
Query: 122 --AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+GN ++ + +++ ADV+ +S T+ + +E++ L G++N+YN
Sbjct: 242 RYVKGN----ILKYGIDSV-ADVYAKDITMSDEGTKFKLCYESNEIEVNLHLPGKYNVYN 296
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
L A +++G + I +G+E + +VPGR E I +Q F VI+DYAHTPD + +L +
Sbjct: 297 ALGCAAAALSLGIDINTIKKGLEALKSVPGRSERIKAKQGFTVIIDYAHTPDGIENILKA 356
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
RE R+I + G G+ D+ KRPLM K A +D I+TSDNP NE+P I+ D++ G
Sbjct: 357 TREYTKGRLIILFGAGGDRDKTKRPLMGKAAGTFADYCIITSDNPRNEEPEQIIQDIIPG 416
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V T Y ++ + R+ A++ A+ ++ D++V+AGKGHETYQ
Sbjct: 417 VEKTGCPY----------------KIIVD--RKEAIKYALMNAKKDDVIVIAGKGHETYQ 458
Query: 360 IEGDKKEFFDDREESREALQ 379
I DK FD++E E LQ
Sbjct: 459 ILKDKTVHFDEKEIVNELLQ 478
>gi|427719251|ref|YP_007067245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Calothrix sp. PCC 7507]
gi|427351687|gb|AFY34411.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Calothrix sp. PCC 7507]
Length = 498
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/356 (40%), Positives = 199/356 (55%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q + + + G E VME SSH LA GR F++ VF+NLT+DH+D+H
Sbjct: 160 TTPFAVELQQQLGEAVDAGCEFGVMEVSSHALAQGRVLGCQFEVGVFSNLTQDHLDYHRD 219
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKA LFS D + R ++N DD IA +PD V ++++ N A++
Sbjct: 220 MEDYFAAKALLFSP--DYLKGRAIINADDAYGERLIAALSPDR-VWSYSVNNADANLWMS 276
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
++TP G + S L+G++N+ N+LAAV + +G L+ + I E
Sbjct: 277 DLNYEPNGVSGTLHTPKGDVAFRSPLVGQYNLENLLAAVGAVLHLGLDLQLVATAIPEFP 336
Query: 206 AVPGRCELID--EEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E + Q VIVDYAHTPD+L LL + R P ++I V GC G+ DR KR
Sbjct: 337 GVPGRMERVQIVPNQDISVIVDYAHTPDSLENLLKAARPFIPGKVICVFGCGGDRDRTKR 396
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA + +DV ++TSDNP EDP IL D+LAG+ P+
Sbjct: 397 PKMGKIAAELADVAVVTSDNPRTEDPERILQDVLAGI-------------------PDTV 437
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+ R A+R A+ + GD +++AGKGHE YQI G +K FDDRE++REALQ
Sbjct: 438 TPIVISDRATAIRTAILQAQPGDGILLAGKGHEDYQILGTEKIHFDDREQAREALQ 493
>gi|254302924|ref|ZP_04970282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
[Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
gi|148323116|gb|EDK88366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
[Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
Length = 485
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/373 (37%), Positives = 209/373 (56%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y I GD E+ TTP+++ + + K L E VVME SSH L +GR VDF
Sbjct: 131 IGTIEYKI-GDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVEVVDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D + V+NIDD + D
Sbjct: 190 DYALFTNLTQDHLDYHITMENYFQAKRKLFLKLKDI--NNSVINIDDKYGKRLYDEFIID 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ ++ + L + + + + I ++ LLG N+YN L A+ +
Sbjct: 248 NPEIISYGIDGGDLEGDYLD------DGYIDIKYKNQIEKVKFALLGDFNLYNTLGAIGI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G +E+I++ + + A PGR E +D Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 VLKIGISMEEILKRVSTIKAAPGRFEALDCGQDYKVIVDYAHTPDALVNVIVAARNIKNG 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K A D SD+ ILTSDNP E P I DD+ G
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFDDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
++K +DY F R A++ A+ + E+ D++++ GKGHETY I G KK
Sbjct: 416 -FIK--SDDY----------FFEPDREKAIKLAINIAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|358466087|ref|ZP_09175948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Fusobacterium sp. oral taxon 370 str. F0437]
gi|357069385|gb|EHI79302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Fusobacterium sp. oral taxon 370 str. F0437]
Length = 485
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 204/373 (54%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y I GD E+ TTP+++ + + K L E VVME SSH L +GR +DF
Sbjct: 131 IGTIEYKI-GDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVDVLDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D + V NIDD + D
Sbjct: 190 DYALFTNLTQDHLDYHVTMENYFQAKRKLFLKLKDI--NNSVFNIDDKYGKRLYDEFVED 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ +E + L + + + + ++ LLG N+YN L AVA+
Sbjct: 248 NPEIISYGIEGGDLEGEYLD------DGYIDIKFREKVEKVKFALLGDFNLYNTLGAVAI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G EDI+ I ++A PGR E ++ Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 AVKMGIKWEDILERISNINAAPGRFETLNCGQDYKVIVDYAHTPDALVNVIVAARNIRNG 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K A + SD+ ILTSDNP E P I D+ G T
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFTDVKTGFAKT-- 419
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
+DY F R A++ A+ M E+ D++++ GKGHETY I G KK
Sbjct: 420 -------DDY----------FFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|429204854|ref|ZP_19196135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lactobacillus saerimneri 30a]
gi|428146716|gb|EKW98951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lactobacillus saerimneri 30a]
Length = 494
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 206/387 (53%), Gaps = 35/387 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ I G K + TTPD + +Q + +M+ + V ME SS L GR
Sbjct: 129 GEQTGLIGTMYRRI-GQKKFPTANTTPDVLTLQKTLKQMVDSHVTTVAMEVSSIALIQGR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-----KVVNIDDPN 116
+DFD AVFTN T+DH+D+H T EY +AK+ LF+++ + V+NIDDP
Sbjct: 188 VWGIDFDTAVFTNFTQDHLDYHKTMAEYAHAKSLLFAQLGNTYGSNGRPKVAVMNIDDPM 247
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFEL----SLFETQVLVNTPHGILEISSGLL 172
F Q + V V+T+ ++N +A V ++ + F+ V H ++ +
Sbjct: 248 GEKF--QADTAVEVLTYGIKNHRAMVRAQNVKIHERGTDFDLIVFGEKHH----LTVKTV 301
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
G N+YN+LAA G G +++ +E V GR +LI IVDY+HTPD
Sbjct: 302 GLFNVYNLLAAFGAGYVAGISTAELIATLEAFPGVKGRLQLITSASGVSAIVDYSHTPDG 361
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L L ++ + APR + V+GC G+ DR KRP M KIA + SD TSDNP EDP I
Sbjct: 362 LLNALTTINDFAPRDVYCVIGCGGDRDRSKRPKMAKIAVENSDHVFFTSDNPRTEDPEAI 421
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
LD+++AGV P G+ RR A++ A+ + GD+V++AG
Sbjct: 422 LDEVVAGV-------------------PAGYHYDRITDRRAAIQTAIHQAQAGDIVLIAG 462
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHE YQI G K FDD EE+ +AL+
Sbjct: 463 KGHEDYQIIGKTKHHFDDVEEATKALE 489
>gi|345860032|ref|ZP_08812361.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Desulfosporosinus sp. OT]
gi|344326893|gb|EGW38342.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Desulfosporosinus sp. OT]
Length = 495
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 147/379 (38%), Positives = 210/379 (55%), Gaps = 27/379 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I G + + RTTP+A+ +Q L+ +M+ G VME SSH L LGR
Sbjct: 132 GKKVGLIGTLGSRIDGRD-IPGERTTPEAIEIQKLLGEMVEEGVSLAVMEVSSHALDLGR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK--VVNIDDPNATS 119
+FD+ +FTNLT+DH+D+H T E+Y AK++LFS + +H K ++N DDP A S
Sbjct: 191 VVGCEFDVGIFTNLTQDHLDYHKTMEDYLYAKSRLFSNL-RGVKHLKLSILNGDDP-AFS 248
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + P+V++ + N D E++ V I +I G ++YN
Sbjct: 249 KLCHASA-APIVSYGIHNG-VDYRAENVEVTSEGVSFQVRFRERIQDIKYSTPGVFSVYN 306
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
LAA A G+ G E + + E+ VPGR + Q F VIVDYAHTPD L + +
Sbjct: 307 ALAAFAWGVEQGYGPEAVAEALAEIPGVPGRFVSVRRGQPFHVIVDYAHTPDGLENVART 366
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
R ++ITV GC G+ DRGKRPLM ++A+ SD I+TSDNP EDP I+ ++L G
Sbjct: 367 ARGFTKGKLITVFGCGGDRDRGKRPLMGEVASQWSDFVIVTSDNPRTEDPDQIIQEVLTG 426
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V DY + L D RR A+ A M + GD +++AGKGHETYQ
Sbjct: 427 VSGV----------DY---------VALRD-RREAIWNACRMAKAGDTILIAGKGHETYQ 466
Query: 360 IEGDKKEFFDDREESREAL 378
I G + FDDRE +R+AL
Sbjct: 467 IFGTEVHPFDDREVARDAL 485
>gi|411117875|ref|ZP_11390256.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillatoriales
cyanobacterium JSC-12]
gi|410711599|gb|EKQ69105.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillatoriales
cyanobacterium JSC-12]
Length = 500
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 148/377 (39%), Positives = 204/377 (54%), Gaps = 24/377 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
RT +L ++ G + + TTP AV +Q +A+ + G E VME SSH LA R +
Sbjct: 142 RTALLGTLYTRWQGFQQ-TAVHTTPFAVELQKQLAEAVAAGCEYGVMEVSSHALAQERVA 200
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
F++ VFTNLT+DH+DFH + Y AKA LF+ D + R V+N+DDP AQ
Sbjct: 201 GCTFEVGVFTNLTQDHLDFHRDMDNYFAAKALLFTP--DYLKGRAVINLDDPYGKQLAAQ 258
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
P+ T++ + AD+ ++TP G S L+G+ N+ N+LAA
Sbjct: 259 LPPEAVFWTYSTHDASADLWTGDLVYGSASVSGTLHTPKGDAPFVSPLVGQFNLANLLAA 318
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELID--EEQAFGVIVDYAHTPDALSRLLDSVR 241
+ + +G LE IV + + VPGR E + EQ VIVDYAHTPD+L LL + R
Sbjct: 319 IGAVLHLGVELETIVAALPQFSGVPGRMEQVKLTPEQDISVIVDYAHTPDSLENLLKASR 378
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
P R+I V GC G+ DR KRP M +IA + +DV +TSDNP EDP ILDD+L G+
Sbjct: 379 PFIPGRMICVFGCGGDRDRTKRPQMGRIAANLADVVYVTSDNPRTEDPQRILDDILEGI- 437
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
PN + + R A+ A+ + GD V++AGKGHE YQI
Sbjct: 438 ------------------PNSVQPIVMSDRAAAIHAAIHAAQPGDGVLIAGKGHEDYQIL 479
Query: 362 GDKKEFFDDREESREAL 378
G +K FDDRE++R AL
Sbjct: 480 GTEKIHFDDREQARVAL 496
>gi|340752167|ref|ZP_08688975.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Fusobacterium sp. 2_1_31]
gi|229421983|gb|EEO37030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Fusobacterium sp. 2_1_31]
Length = 485
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 206/373 (55%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y I GD E+ TTP+++ + + K L E VVME SSH L +GR +DF
Sbjct: 131 IGTIEYKI-GDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVDVLDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D + V NIDD + D
Sbjct: 190 DYALFTNLTQDHLDYHVTMENYFQAKRKLFLKLKDI--NNSVFNIDDKYGKRLYDEFIED 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ ++ + L + + + + ++ LLG N+YN L AVA+
Sbjct: 248 NPEIISYGIDGGDLEGEYLD------DGYIDIKFKGKVEKVKFALLGDFNLYNTLGAVAI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
I +G EDI++ + + A PGR E ++ Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 AIKMGISWEDILKRVSNIKAAPGRFEALNCGQDYKVIVDYAHTPDALVNVIVAARNIRNG 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K A D SD+ ILTSDNP E P I D+ G
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFADVKIG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
+ +ND Y P+ R A++ A+ M E+ D++++ GKGHETY I G KK
Sbjct: 416 ----FTKNDDYFFEPD---------REKAIKLAINMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|399888849|ref|ZP_10774726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium arbusti SL206]
Length = 482
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 215/382 (56%), Gaps = 35/382 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ YI GD K+ S RTTP+++ + L M+ +G + VME SSH L L R
Sbjct: 129 GYKVGLVGTIANYI-GDKKIVSHRTTPESLELHQLFKDMVDSGVDYCVMEVSSHSLYLDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ F+ +FTNLTRDH+DFH T E Y NAK LF ++N+DD S+
Sbjct: 188 VYGIKFNEGIFTNLTRDHLDFHKTFENYYNAKLILF-----KNSQNSIINMDD----SYG 238
Query: 122 AQGNPDVPV--VTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ D+ +T+ ENK+ DV ++ ++ + +IS + GR+NI N
Sbjct: 239 DKVYKDLSCNKITYGFENKE-DVEAKHIKMHSRGIDFQISYLNESADISLNIPGRYNISN 297
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYAHTPDALSRLL 237
L + AV I G L+ I G+E + AVPGRCE I+ G +I+DYAHTPDAL +L
Sbjct: 298 ALGSAAVCILEGLTLKQIKDGLESLKAVPGRCEAIETNLNLGFEIIIDYAHTPDALMNIL 357
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ RE R+I+V GC G+ D+ KRP+M I + SD+ I+TSDNP E+P+ I+++++
Sbjct: 358 KTTREFTKGRLISVFGCGGDRDKVKRPIMGDIGSKMSDIAIITSDNPRTEEPMTIINEIV 417
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+ D Y + N RR A++ A+++ ++ D++VVAGKGHE
Sbjct: 418 KGI-----------HKDNYITIEN---------RREAIKKAISIAKKDDVIVVAGKGHED 457
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ + FD+RE E ++
Sbjct: 458 YQVLREGTIHFDEREVIAEIIK 479
>gi|197124211|ref|YP_002136162.1| UDP-N-acetylmuramyl tripeptide synthetase [Anaeromyxobacter sp. K]
gi|196174060|gb|ACG75033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K]
Length = 496
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 150/378 (39%), Positives = 211/378 (55%), Gaps = 20/378 (5%)
Query: 6 GMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEV 65
G+L ++S+ G ++ S TTP++ +Q ++A+M+ G VME SSH LA R + +
Sbjct: 131 GVLGTISFRFPGADRPAS-HTTPESTAIQAVLAEMVAAGARDAVMEVSSHALAQERVAGI 189
Query: 66 DFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGN 125
F A FTNLTRDH+D+H + Y AK +LF+ + P V+N DP Q
Sbjct: 190 RFQAAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLAPG-GTAVINARDPWGARLADQLG 248
Query: 126 PDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVA 185
P V + + A + L+ L T TP G L I S L+G+HN+ N+L A
Sbjct: 249 PGPRVWRYGVRAGDA-LRALEVRTGLAGTSATFETPAGALAIRSPLVGQHNLENLLCAAG 307
Query: 186 VGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP 245
+ + +G P + +VRG+ PGR E ID + V VDYAHT DAL+R++ ++R L+P
Sbjct: 308 LALGLGLPPDAVVRGLAASHGAPGRLERID-GRGLSVFVDYAHTDDALARMIAALRGLSP 366
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RR+I V GC G+ DRGKRPLM A +D+ I+TSDNP EDPL I+ D+L G+ +
Sbjct: 367 RRLICVFGCGGDRDRGKRPLMGAAAA-AADLAIVTSDNPRTEDPLAIIADVLPGLDRAGK 425
Query: 306 EYL-----KYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
L + GE+ Y + RR A+ AV EGD V+VAGKGHE YQ
Sbjct: 426 PALGAARARTGEDGY----------LVEPDRRAAIALAVECAREGDAVLVAGKGHEDYQQ 475
Query: 361 EGDKKEFFDDREESREAL 378
G +K F DR+E+R+AL
Sbjct: 476 VGAEKRPFSDRDEARKAL 493
>gi|289765847|ref|ZP_06525225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. D11]
gi|289717402|gb|EFD81414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. D11]
Length = 485
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 136/373 (36%), Positives = 209/373 (56%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y + GD ++ TTP+++ + + K L E VVME SSH L LGR +DF
Sbjct: 131 IGTIEYKV-GDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGRVDVIDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D ++ V+NIDD + D
Sbjct: 190 DCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKD--KNDSVINIDDNYGKRLYDEFIVD 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ ++ + L + + + + ++ LLG N+YN L A+ +
Sbjct: 248 NPEIISYGIDGGDLEGEYLD------DGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G +E+I++ + + A PGR E +D Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 ALKIGISMEEILKRVSNIKAAPGRFEALDCGQDYKVIVDYAHTPDALVNVIVAARNIKNV 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K+ D SD+ ILTSDNP E+P I D+ G
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
+ ++D Y P+ R A++ AV M E+ D++++ GKGHETY I G KK
Sbjct: 416 ----FIKSDDYIFEPD---------REKAIKAAVNMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|126658487|ref|ZP_01729635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cyanothece sp. CCY0110]
gi|126620229|gb|EAZ90950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cyanothece sp. CCY0110]
Length = 490
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 203/356 (57%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +A+ + E VME SSH LA GR + F ++VFTNLT+DH+DFH
Sbjct: 153 TTPFAPELQEQLAQAVAANNEYCVMEVSSHALAQGRVKQCPFKVSVFTNLTQDHLDFHKD 212
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y +AK LF+ D + + ++N+DDP I P+ V ++++ N +AD +
Sbjct: 213 MEDYFSAKQLLFTP--DYLQEKAIINLDDPYGKRLIESFKPE-QVWSYSVSNAEADFYTS 269
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ TP G +E SS L+G+ N+ N+LAAV+ + G L + + +
Sbjct: 270 DLTYRGNGVTGTLYTPLGSVEFSSPLVGQFNLSNVLAAVSAVLHFGLDLTETIESLPHFL 329
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I+E+Q VIVDYAHTPD+L L + R ++I V GC G+ DR KR
Sbjct: 330 GVPGRMERVQINEKQDISVIVDYAHTPDSLENSLKAARPFVKGKLICVFGCGGDRDRTKR 389
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM + + +DV+++TSDNP EDP IL+D+L G+ +++
Sbjct: 390 PLMGQASAQLADVSVVTSDNPRTEDPQRILEDILTGISQSVEP----------------- 432
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
L + D R A++ A+ + GD V++AGKGHE YQI G +K FDDREE+R+AL+
Sbjct: 433 -LVISD-RAEAIKTAILQAKPGDGVLIAGKGHEDYQILGTEKIHFDDREEARKALE 486
>gi|354584702|ref|ZP_09003595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus lactis
154]
gi|353191984|gb|EHB57489.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus lactis
154]
Length = 498
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 155/385 (40%), Positives = 223/385 (57%), Gaps = 27/385 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ I G ++ T D ++Q+ + KM T+ VME SS GL +GR
Sbjct: 130 GFRTGLMGNIGTKI-GSTMFKTDINTQDPPILQSNLRKMKEQSTDYCVMEVSSQGLHMGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDP-ERHRKVVNIDDP 115
DF AVFTNLT DH+D+H T+E+Y AK LFS + DP +R ++N DD
Sbjct: 189 VLGCDFRTAVFTNLTHDHLDYHKTKEDYLAAKGMLFSGLGNSFAPDPAKRKYAILNADD- 247
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
A+ +++ G ++T+ ++ A+V +L+ T+ V + G+ EI +G
Sbjct: 248 EASRYLS-GITAAQIITYGIKTP-ANVMAKDMKLTPKGTKFTVESFAGVAEIELRQVGMF 305
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAA+A +A P + I G+ + V GR E+IDE+Q + V+VDYAHTPD+L
Sbjct: 306 NVYNALAAIAAALAEQVPFDVIQLGLHGLSNVSGRMEVIDEQQDYLVLVDYAHTPDSLDN 365
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L ++RE A +RIITV GC G+ DR KRP M +A SD I+TSDNP EDP IL D
Sbjct: 366 ALSTLREFADQRIITVFGCGGDRDRTKRPAMGILAAKHSDHVIITSDNPRTEDPHGILKD 425
Query: 296 MLAGVGWTMQEYLKYG-ENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
+ GV L+YG ++ Y + + RR A+ AV M GD+V++AGKG
Sbjct: 426 IELGV-------LEYGMSSESYEMIAD---------RRQAIIRAVNMARSGDIVIIAGKG 469
Query: 355 HETYQIEGDKKEFFDDREESREALQ 379
HETYQI D+ FDDREE++ A++
Sbjct: 470 HETYQILNDQTIHFDDREEAKAAIR 494
>gi|422316556|ref|ZP_16397948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Fusobacterium periodonticum D10]
gi|404590933|gb|EKA93195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Fusobacterium periodonticum D10]
Length = 485
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 140/373 (37%), Positives = 206/373 (55%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y I GD E+ TTP+++ + + K L E VVME SSH L +GR +DF
Sbjct: 131 IGTIEYKI-GDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVDVLDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D + V NIDD + D
Sbjct: 190 DYALFTNLTQDHLDYHVTMENYFQAKRKLFLKLKDI--NNSVFNIDDKYGKRLYDEFIED 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ ++ + L + + + + ++ LLG N+YN L A+A+
Sbjct: 248 NPEIISYGIDGGDLEGEYLD------DGYIDIKFKGKVEKVKFALLGDFNLYNTLGAIAI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
I +G EDI++ + + A PGR E ++ Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 AIKMGISWEDILKRVSNIKAAPGRFEALNCGQDYKVIVDYAHTPDALVNVIVAARNIRNG 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K A D SD+ ILTSDNP E P I D+ G
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFADVKIG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
+ +ND Y P+ R A++ A+ M E+ D++++ GKGHETY I G KK
Sbjct: 416 ----FTKNDDYFFEPD---------REKAIKLAINMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|423551646|ref|ZP_17527973.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus ISP3191]
gi|401187484|gb|EJQ94557.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus ISP3191]
Length = 492
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 213/381 (55%), Gaps = 25/381 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ + + G + T + +Q + M + + VME +S GL + R
Sbjct: 130 GYHTGLMGNNGVKV-GSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMER 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRKVVNIDDPNA 117
+F IAVFTNLT+DH+D+HGT +EY++ K+ LF+R+ + ++ V+N DDP+
Sbjct: 189 VKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSV 248
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + V+T+ + N ADV LS + LV++ +G +E+S L+G N+
Sbjct: 249 EYF--KKITSAEVITYGIHNG-ADVQAKNINLSPKGIRFLVSSFNGEIEVSLNLVGCFNV 305
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ V + G PL +I + + ++ GR E+IDE Q F VIVDYAHTPDAL +L
Sbjct: 306 YNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDENQDFLVIVDYAHTPDALENVL 365
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E + ++ITV GC G+ D KR +M IA SD +TSDNP +EDP I+ D+
Sbjct: 366 STISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIE 425
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G +L+ +Y + R +A+ A+ M D+V++AGKGHET
Sbjct: 426 KG-------FLQNNNLNYKVEVN----------RELAINHAINMASSNDIVLIAGKGHET 468
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI D FDD+E++R+A+
Sbjct: 469 YQILKDSTIHFDDKEKARQAI 489
>gi|443310803|ref|ZP_21040443.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechocystis sp. PCC
7509]
gi|442779157|gb|ELR89410.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechocystis sp. PCC
7509]
Length = 492
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 146/380 (38%), Positives = 211/380 (55%), Gaps = 30/380 (7%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
L T ++ ++ G K + TTP AV +Q A+ G + +ME SSH LA GR
Sbjct: 134 LSTALMGTLYTRWAGFEKTAA-HTTPFAVELQQQFAEARDAGCKFGIMEVSSHALAQGRV 192
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPE--RHRKVVNIDDPNATSF 120
+FD+AVFTNLT+DH+D+H E+Y +AKA LFS PE + ++NIDDP +
Sbjct: 193 KSCEFDVAVFTNLTQDHLDYHKDMEDYFSAKALLFS----PEYLQGLAIINIDDPISDRL 248
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I Q PV +++ ++ AD++ + ++TP G + S L+G++N+ N+
Sbjct: 249 INQIQS--PVWRYSVSDRTADLYTTDLKYQSSGVSGTLHTPKGDIAFESPLVGQYNLANL 306
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLD 238
LAAV + +G LE I + + VPGR E I Q IVDYAHTPD+L LL
Sbjct: 307 LAAVGTALHLGVDLELIAQALPNFPGVPGRMERVQISPNQDISTIVDYAHTPDSLENLLL 366
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ R ++I V GC G+ DR KRP M KIA + +DV ++TSDNP E+P IL D+LA
Sbjct: 367 AARPFISGKMICVFGCGGDRDRTKRPKMGKIAAELADVAVVTSDNPRTENPEQILQDILA 426
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ T++ + + D R A+ A+ + GD V++AGKGHE Y
Sbjct: 427 GIPATIKP------------------IVISD-RAAAIEDAILQAKPGDGVLIAGKGHEDY 467
Query: 359 QIEGDKKEFFDDREESREAL 378
QI G +K FDDRE+++ AL
Sbjct: 468 QILGTEKIHFDDREQAKNAL 487
>gi|228915178|ref|ZP_04078773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228844409|gb|EEM89465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 499
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 213/381 (55%), Gaps = 25/381 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ + + G + T + +Q + M + + VME +S GL + R
Sbjct: 137 GYHTGLMGNNGVKV-GSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMER 195
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRKVVNIDDPNA 117
+F IAVFTNLT+DH+D+HGT +EY++ K+ LF+R+ + ++ V+N DDP+
Sbjct: 196 VKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSV 255
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + V+T+ + N ADV LS + LV++ +G +E+S L+GR N+
Sbjct: 256 EYF--KKITSAEVITYGIHNG-ADVQAKNINLSPKGIRFLVSSFNGEIEVSLNLVGRFNV 312
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ V + G PL +I + + ++ GR E+IDE Q F VIVDYAHT DAL +L
Sbjct: 313 YNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDENQDFLVIVDYAHTLDALENVL 372
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E + ++ITV GC G+ D KR +M IA SD +TSDNP +EDP I+ D+
Sbjct: 373 STISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPCSEDPQAIMKDIE 432
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G +L+ +Y + R +A+ A+ M D+V++AGKGHET
Sbjct: 433 KG-------FLQNNNLNYKVEVD----------RELAINHAINMASSNDIVLIAGKGHET 475
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI D FDD+E++R+A+
Sbjct: 476 YQILKDSTIHFDDKEKARQAI 496
>gi|300869516|ref|ZP_07114098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Oscillatoria sp. PCC 6506]
gi|300332489|emb|CBN59296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Oscillatoria sp. PCC 6506]
Length = 516
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 146/355 (41%), Positives = 200/355 (56%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A + G++ +ME SSH LA R F++AVFTNLT+DH+D+H
Sbjct: 179 TTPFAVELQKQLAAAVEAGSKFGIMEVSSHALAQSRVLGCPFEVAVFTNLTQDHLDYHRD 238
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y NAKA LFS + + R +VN DD I N + V +++ + KAD+
Sbjct: 239 MEDYFNAKALLFSS--NYLKGRAIVNADDAYGRRIIDSLNSE-QVWSYSTNDSKADLWAS 295
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ + +++TP G + L+G++N+ N+LAAV G+ +G L IV + E
Sbjct: 296 DLKYEPNGVKGILHTPKGEADFYLPLVGQYNLSNLLAAVGAGLHLGLELSAIVLNLPEFP 355
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I Q VIVDYAHTPD+L LL + R P R+I V GC G+ DR KR
Sbjct: 356 GVPGRVEKVQISPVQDISVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKR 415
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KI + +DVT++TSDNP EDP IL D+L G+ P
Sbjct: 416 PKMGKIVAELADVTVVTSDNPRTEDPERILQDVLTGIA------------------PEVK 457
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
L + D R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++R AL
Sbjct: 458 PLVIGD-RAQAIRTAILEAKPGDGVLIAGKGHEDYQILGTEKIHFDDREQARLAL 511
>gi|292669648|ref|ZP_06603074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC
43541]
gi|292648445|gb|EFF66417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC
43541]
Length = 496
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 149/382 (39%), Positives = 211/382 (55%), Gaps = 24/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ + D+ + TTPD +++Q L+A+M G +AVVME SSH L GR
Sbjct: 132 GRRVGLIGTIQIMME-DDVFSTANTTPDVIVMQQLLAEMRTRGMDAVVMEVSSHALDQGR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD---PERHRKVVNIDDPNAT 118
+ ++FD AVFTNLT+DH+D+H T E Y AKA+LF + + E ++N DD A
Sbjct: 191 VAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFDLVSEQGVKEGKTAILNADD--AA 248
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL-EISSGLLGRHNI 177
+ + + + P++T+ ++ A + K L ++ + L + +G+ G N+
Sbjct: 249 AKMMRAHTHCPLITYGVDMPAA-LTARKIRLGQDGMELTIAYAGAELPAVQTGITGLFNV 307
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA +A DI + VPGR EL+ Q F VIVDYAHTPD + +L
Sbjct: 308 YNVLAAAGAALAEQVTASDITAALAAFSGVPGRFELVRAGQDFSVIVDYAHTPDGMENVL 367
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ R + RIITV GC G+ DR KRP+M +IA + DV +LTSDNP EDP ILD++
Sbjct: 368 RTARAVTTGRIITVFGCGGDRDRTKRPIMGRIAAELGDVIVLTSDNPRTEDPAAILDEVE 427
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV P + L D RR A+ AV GD VV+ GKGHET
Sbjct: 428 AGV---------------LPAIGGKPYEKLVD-RRTAIFHAVQTARAGDTVVILGKGHET 471
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI D FDDRE + EA++
Sbjct: 472 YQILKDGTIHFDDRETAAEAIR 493
>gi|333371332|ref|ZP_08463285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase,
partial [Desmospora sp. 8437]
gi|332976289|gb|EGK13149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Desmospora sp. 8437]
Length = 399
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 155/383 (40%), Positives = 211/383 (55%), Gaps = 27/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ I GD TTPDAV +Q KM+ G V+EASSH L LGR
Sbjct: 34 GHETGLIGTINMQI-GDETYPVKNTTPDAVELQRGFRKMVDRGCTHAVIEASSHALHLGR 92
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD------PERHRKVVNIDDP 115
F AVFTNLT+DH+D+HGT + YR AK LF ++ + ++ V+NIDD
Sbjct: 93 TRGCRFKTAVFTNLTQDHLDYHGTMDHYRAAKGILFGQLGNVYTDKAEDQPLAVLNIDDE 152
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
++ V+T+ +E+ ADV T+ +NT G ++I L+G+
Sbjct: 153 AGEIYME--TTSAQVITYGVEHP-ADVRGENIRFYSGGTRFTLNTYRGSVDIDMKLMGKF 209
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
++YN LAA AV + G LE I + V VPGR E +D Q F V+VDYAHTPD+L
Sbjct: 210 SVYNALAAAAVALGEGISLEKIGEVLSRVKGVPGRLEAVDAGQPFPVLVDYAHTPDSLEN 269
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +VR II VVGC G+ DRGKRP M +IA + S+ ++TSDNP EDP I+DD
Sbjct: 270 VLTTVRGFTKGNIICVVGCGGDRDRGKRPQMARIAAENSNRVVITSDNPRTEDPRRIIDD 329
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
MLAGV K D +P+ R A+ AV + D+V++AGKGH
Sbjct: 330 MLAGV--------KDFPEDRIQVIPD---------RAEAIGYAVRHAQADDVVLIAGKGH 372
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
ETYQ + FDDRE +R A+
Sbjct: 373 ETYQEINGVRHDFDDREVARTAI 395
>gi|28211294|ref|NP_782238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium tetani E88]
gi|46577021|sp|Q894B7.1|MURE_CLOTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|28203734|gb|AAO36175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium tetani E88]
Length = 485
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/381 (36%), Positives = 212/381 (55%), Gaps = 33/381 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ YI GD K+ + RTTP+++ + L M+ +G + VME SSH L L R
Sbjct: 132 GFKVGLMGTILNYI-GDRKIYAQRTTPESLEIHKLFKDMVDSGVDYCVMEVSSHSLYLDR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
++F+ +FTNLT+DH+DFH T E Y N+K LF ++ V+NIDD +
Sbjct: 191 VYGIEFNEGIFTNLTQDHLDFHKTFENYYNSKLMLFKNSINS-----VINIDDNYGERIL 245
Query: 122 AQGNPDVPVVTFAMENKK-ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ + TF KK +D+ L + V+ +I+ + G +N+ N
Sbjct: 246 KE----IEEKTFTYSIKKYSDLKAESVRLHSRGGEFTVDFKGNKEKINIHIPGEYNVSNA 301
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYAHTPDALSRLLD 238
L ++ + G L+ I RG+E++ VPGRCE++ G VIVDYAHTPD L +L
Sbjct: 302 LGSILACVNEGISLKVIKRGLEKLSGVPGRCEIVTMGYNLGYDVIVDYAHTPDGLDNVLR 361
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ R+ ++I+V GC G+ DR KRP+M +I T+ SD+ ILTSDNP E+P I+DD++
Sbjct: 362 TARDFTKGKLISVYGCGGDRDRAKRPIMGRIGTELSDLAILTSDNPRTEEPFSIIDDIVK 421
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GV T Y+ + RR A++ A+ + ++ D++VVAGKGHE Y
Sbjct: 422 GV--TKDNYI------------------IVQSRREAIKKAMTIAKKDDVIVVAGKGHEDY 461
Query: 359 QIEGDKKEFFDDREESREALQ 379
QI DK FD+RE +E ++
Sbjct: 462 QILKDKTIHFDEREVIKEIIE 482
>gi|390453130|ref|ZP_10238658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus peoriae KCTC 3763]
Length = 495
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 151/387 (39%), Positives = 210/387 (54%), Gaps = 31/387 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ TG++ ++ G + S TTP+AV +Q + M G + VME SSH L GR
Sbjct: 127 GVNTGLIGTIQMRYGGQSHPMSG-TTPEAVELQRYLGNMAEQGVQCCVMEVSSHALEQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD------PERHRKVVNIDDP 115
DF A+FTNLT+DH+D+H T EEY AK LFSR+ + + V+N DDP
Sbjct: 186 VKGTDFRTAIFTNLTQDHLDYHNTMEEYLAAKGLLFSRLGNGFSRDAADSKYAVLNADDP 245
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
++ F AQ V+T+ +E K++DV + + T V+T G +I ++G+
Sbjct: 246 ASSYFQAQ--TAAQVITYGVE-KESDVQASRIMIGAKGTSFHVSTFKGNTDIELRMVGKF 302
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAA+ + G L DI +E + V GR E +D Q F VIVDYAHTPD L
Sbjct: 303 NVYNALAAITAALLEGISLADIKHSLESIAGVDGRVEPVDAGQPFAVIVDYAHTPDGLEN 362
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +V+E +I V GC G+ DR KRPLM KIA SD + +TSDNP EDP IL D
Sbjct: 363 VLRTVKEFVVGKIWCVFGCGGDRDRTKRPLMGKIAARYSDHSFITSDNPRTEDPQVILKD 422
Query: 296 MLAGV---GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ G+ G + Y L + RR A+ A+ M D+V++AG
Sbjct: 423 IEQGLIDEGVAAERY----------------ELIVD--RRAAIHKAIEMASPDDVVLIAG 464
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHETYQ+ G FDDR ++EA++
Sbjct: 465 KGHETYQLIGKTVHEFDDRIVAKEAIR 491
>gi|220918991|ref|YP_002494295.1| UDP-N-acetylmuramyl tripeptide synthetase [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219956845|gb|ACL67229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 496
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/378 (39%), Positives = 210/378 (55%), Gaps = 20/378 (5%)
Query: 6 GMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEV 65
G+L ++S+ G ++ S TTP++ +Q ++A+M+ G VME SSH LA R + +
Sbjct: 131 GVLGTISFRFPGADRPAS-HTTPESTAIQAVLAEMVAAGARDAVMEVSSHALAQERVAGI 189
Query: 66 DFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGN 125
F A FTNLTRDH+D+H + Y AK +LF+ + P V+N DP Q
Sbjct: 190 RFQAAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLAPG-GTAVINARDPWGARLADQLG 248
Query: 126 PDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVA 185
P V + + A + L+ L T TP G + I S L+G+HN+ N+L A
Sbjct: 249 PGPRVWRYGVRAGDA-LRALEVRTGLAGTSATFETPAGAIAIRSPLVGQHNLENLLCAAG 307
Query: 186 VGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP 245
+ + +G P E + RG+ PGR E ID + V VDYAHT DAL+R++ ++R L+P
Sbjct: 308 LALGLGLPPEAVARGLAASHGAPGRLERID-GRGLSVFVDYAHTDDALARMIAALRGLSP 366
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RR+I V GC G+ DRGKRPLM A +D+ I+TSDNP EDPL I+ D+L G+ +
Sbjct: 367 RRLICVFGCGGDRDRGKRPLMGAAAA-AADLAIVTSDNPRTEDPLAIIADVLPGLDRAGK 425
Query: 306 EYL-----KYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
L + GE+ Y + RR A+ AV EGD V+VAGKGHE YQ
Sbjct: 426 PSLGAARARAGEDGY----------LVEPDRRAAIALAVECAREGDAVLVAGKGHEDYQQ 475
Query: 361 EGDKKEFFDDREESREAL 378
G +K F DR+E+R+AL
Sbjct: 476 VGAEKRPFSDRDEARKAL 493
>gi|206890442|ref|YP_002249138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742380|gb|ACI21437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 492
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 218/382 (57%), Gaps = 30/382 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ Y I + K+ + TTP+A Q L+ +ML G E V+ E SSH LAL R
Sbjct: 132 KTGVIGTIKYLIDNEEKV-AVHTTPEAPEFQELLHEMLVKGVEYVITEVSSHALALKRVD 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
FDIAVFTNL+RDH+DFH E+Y NAK +LF+ ++ E V+N DD Q
Sbjct: 191 YTKFDIAVFTNLSRDHLDFHKDMEDYFNAKKRLFTELLKNE-GVAVINFDDVYGRRLAEQ 249
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVN-TPHGILEISSGLLGRHNIYNILA 182
N +T+++EN +AD++ + L+ ET++ ++ L + + LLG NIYN+++
Sbjct: 250 LN--TKKITYSIENPQADIYVKNYRLNFKETEINLHIKKEKELVVKTHLLGIPNIYNVIS 307
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRE 242
AV+V +A+ P + I I + + GR E +DE Q F V VDYAH+PDAL RLL SVR+
Sbjct: 308 AVSVAVALNIPFDIIESAISDAHSPDGRFERVDEGQDFLVFVDYAHSPDALERLLISVRK 367
Query: 243 LAPR-----RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
L +I+TV GC G DRGKRP M KIAT+ SD ILTSDNP ++
Sbjct: 368 LKEEISKNGKIVTVFGCGGNRDRGKRPQMGKIATELSDYVILTSDNPR-------WEEPR 420
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
+ + LK D Y +P+ R +++ + ++GD+++VAGKGHE
Sbjct: 421 EIIKEIEEGILK----DNYIVVPD---------RTMSLYIGTKICKKGDILIVAGKGHED 467
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ K+ F DRE +AL+
Sbjct: 468 YQEIKGKRYPFSDREILVKALR 489
>gi|154500745|ref|ZP_02038783.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC
29799]
gi|150270634|gb|EDM97943.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pseudoflavonifractor capillosus ATCC 29799]
Length = 486
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 199/373 (53%), Gaps = 26/373 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G++ + I G+ + + RTTP++ VQ L+ M +G VVME SSH LAL
Sbjct: 127 LGAKVGLMGTNQNMI-GEKVIPAHRTTPESWEVQKLLRDMADSGCTHVVMEVSSHALALH 185
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F + +FTNLTRDH+DFHGT EEYR K LF + V+N+DD +
Sbjct: 186 RVDGIAFQVGIFTNLTRDHLDFHGTMEEYRRVKGLLFR-----QTGTAVLNLDDEAGRYY 240
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ P +T++ +ADV L + T I + + G IYN
Sbjct: 241 ASIVT--CPALTYSENKDQADVTAKNIRLFPDRVEFEALTTGAIARVRLPIPGGFTIYNA 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L +A G+A+ PL + + E V GR E++ + VI+DYAHTPDAL +L +V
Sbjct: 299 LGVIACGLALKLPLPQVCASLAEAKGVKGRIEVVPTPTDYAVIIDYAHTPDALENILTTV 358
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R+ P R+I + GC G+ DR KRP+M IA + +D+ +LTSDNP EDP IL D+ AG+
Sbjct: 359 RDFTPGRVICLFGCGGDRDRSKRPVMGAIAAELADLVVLTSDNPRTEDPEAILADIQAGM 418
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
E P + H RR A+R A+ + GD VV+AGKGHETYQ
Sbjct: 419 -----------EGSDTPCMVVPH-------RREAIRRALDEAKSGDTVVLAGKGHETYQE 460
Query: 361 EGDKKEFFDDREE 373
G ++ D+REE
Sbjct: 461 IGTRRRHLDEREE 473
>gi|67922594|ref|ZP_00516100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH
8501]
gi|416391851|ref|ZP_11685751.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Crocosphaera watsonii WH 0003]
gi|67855522|gb|EAM50775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH
8501]
gi|357263765|gb|EHJ12732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Crocosphaera watsonii WH 0003]
Length = 501
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/356 (39%), Positives = 202/356 (56%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +A+ + E VME SSH L GR + F ++VFTNLT+DH+DFH
Sbjct: 163 TTPFAPELQEQLAEAVAANNEYCVMEVSSHALVQGRVKQCPFQVSVFTNLTQDHLDFHKD 222
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AK LF+ D + + +VN+DDP I + V T+++E+ KAD +
Sbjct: 223 MEDYFAAKRLLFTP--DYLQEKAIVNLDDPYGKRLIDSFQTE-QVWTYSVEDTKADFYTS 279
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ TP G +E +S L+G+ N+ N+LAAVA + +G + ++V +
Sbjct: 280 NLTYQANGVTGTLTTPFGNIEFTSPLVGQFNLSNVLAAVATVLYLGLDVREVVEKLPHFL 339
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I+++Q VIVDYAHTPD+L LL + R ++I V GC G+ DR KR
Sbjct: 340 GVPGRMERVQINDKQDISVIVDYAHTPDSLENLLKAARPFIKGKMICVFGCGGDRDRTKR 399
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM + + +DV+++TSDNP EDP IL+D+L G+ T++
Sbjct: 400 PLMGQASAQLADVSVVTSDNPRTEDPQRILEDVLTGIPETIEP----------------- 442
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
L + D R A+ A+ GD V++AGKGHE YQI G +K FDDREE+R+AL+
Sbjct: 443 -LVISD-RAKAINTAILQANPGDGVLIAGKGHEDYQILGTEKIHFDDREEARKALE 496
>gi|334882701|emb|CCB83749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Lactobacillus pentosus MP-10]
Length = 493
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 148/387 (38%), Positives = 211/387 (54%), Gaps = 45/387 (11%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ I D KL + TTPD++ Q +A M G E V ME SS L LGR
Sbjct: 132 TGLIGTMYRKIK-DEKLPTANTTPDSITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPNATS 119
+D+DIAVFTNLT+DH+DFH T +Y AKA LF+++ D V+N DDP
Sbjct: 191 IDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYNADGTNKVAVLNTDDPVGRE 250
Query: 120 FIAQGNPDVPVVTFAM--------ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGL 171
F + V+TF + +N + H +F+LS+F + ++ L
Sbjct: 251 F--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFG---------HVTHVTMQL 299
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD 231
+G+ N+YN+LAA A A G P + I++ +E+V V GR + + VIVDY+HTPD
Sbjct: 300 IGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPD 359
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
L L+++++ A + I VVGC G+ D+ KRP M KIA + S I TSDNP EDP
Sbjct: 360 GLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTM 419
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL+DM+AGV T + +++ R A+ A+ + GD+V++A
Sbjct: 420 ILNDMVAGVPDT--------------------NVPVYEDRHEAIAKAIDAAQPGDVVLIA 459
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI G K FDD EE+ +AL
Sbjct: 460 GKGHEDYQIIGRTKHHFDDSEEAAKAL 486
>gi|86608711|ref|YP_477473.1| UDP-N-acetylmuramyl tripeptide synthetase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557253|gb|ABD02210.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 510
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 189/349 (54%), Gaps = 25/349 (7%)
Query: 33 VQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNA 92
+Q + + G E VME SSH LA R F AV+TNLT+DH+DFHG+ E Y A
Sbjct: 176 LQRSLREAQRAGAEVAVMEVSSHALAQDRVWGCSFAAAVWTNLTQDHLDFHGSMENYWQA 235
Query: 93 KAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKA--DVHPLKFELS 150
KA LF + + + R V+N DD + PD+ ++++ + + P +L
Sbjct: 236 KATLFRQ--EYLQGRAVINADDAGGRRLLQAIRPDLQPWAYSLQPLQGIPGLWPSNVQLH 293
Query: 151 LFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGR 210
Q ++TP G +++ L+G N+ N+LAAV V + +G P+E I + VPGR
Sbjct: 294 PSGLQATLHTPSGAFAVAAPLVGSFNLANLLAAVGVALHLGIPVEIIQSALPHFPGVPGR 353
Query: 211 CELID-EEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKI 269
E + Q VIVDYAHTPD L LL ++R ++I V GC G+ DRGKRP M +I
Sbjct: 354 MERVTLPGQDIAVIVDYAHTPDGLENLLKALRSQVQGQLICVFGCGGDRDRGKRPQMGRI 413
Query: 270 ATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHD 329
A +D I+TSDNP EDP IL D+LAG+ P R D
Sbjct: 414 AATWADQVIVTSDNPRTEDPQQILRDILAGI-------------------PGSPRAVEVD 454
Query: 330 IRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
RR A+R A+ + GD VV+AGKGHE YQI G +K FDDREE+R AL
Sbjct: 455 -RRQAIRLAILAAQPGDTVVIAGKGHEDYQILGTEKIHFDDREEARAAL 502
>gi|423136966|ref|ZP_17124609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Fusobacterium nucleatum subsp. animalis F0419]
gi|371961033|gb|EHO78676.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Fusobacterium nucleatum subsp. animalis F0419]
Length = 485
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/373 (36%), Positives = 208/373 (55%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y + GD ++ TTP+++ + + K L E VVME SSH L LGR +DF
Sbjct: 131 IGTIEYKV-GDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGRVDVIDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D ++ V+NIDD + D
Sbjct: 190 DCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKD--KNDSVINIDDDYGKRLYDEFIVD 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ ++ + L + + + ++ LLG N+YN L A+ +
Sbjct: 248 NPEIISYGIDGGDLEGEYLD------GGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G +E+I++ + + A PGR E +D Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 ALKIGISMEEILKRVSNIKAAPGRFEALDCGQDYKVIVDYAHTPDALVNVIVAARNIKNV 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K+ D SD+ ILTSDNP E+P I D+ G
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
+ ++D Y P+ R A++ AV M E+ D++++ GKGHETY I G KK
Sbjct: 416 ----FIKSDDYIFEPD---------REKAIKAAVNMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|402574218|ref|YP_006623561.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfosporosinus
meridiei DSM 13257]
gi|402255415|gb|AFQ45690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfosporosinus
meridiei DSM 13257]
Length = 492
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 210/381 (55%), Gaps = 26/381 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G++ ++ I+G + RTTP+A+ VQ L+A+M+ VME SSH L LG
Sbjct: 131 LGKKVGLIGTLGARING-RAIPGERTTPEAIEVQKLLAEMVAEDVNLAVMEVSSHALVLG 189
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKV--VNIDDPNAT 118
R + +FD +FTNLT+DH+D+H T E+Y AK+ LFS + ++ +K+ +N DDP
Sbjct: 190 RVAGCEFDAGIFTNLTQDHLDYHKTMEDYLAAKSLLFSNLKGTKQLKKISILNGDDPVFK 249
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
++Q + VV++ + N K D E++ + V + ++ G ++Y
Sbjct: 250 E-LSQASI-ASVVSYGI-NNKVDYRAENVEVTPEGVRFQVQFKGVVQDVWYATPGYFSVY 306
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N LAA G+ G P + + E+ VPGR E + + Q F VIVDYAHTPD L ++
Sbjct: 307 NALAAFVWGVERGYPPATVAEALSEIAGVPGRFESVRQGQPFQVIVDYAHTPDGLENVVR 366
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ + R+ TV GC G+ DR KRPLM ++A+ SD I+TSDNP EDP I+ ++L
Sbjct: 367 TAKSFTKGRLFTVFGCGGDRDRTKRPLMGEVASKGSDFLIVTSDNPRTEDPDQIIQEILT 426
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GV + L D RR A+ A + GD +++AGKGHETY
Sbjct: 427 GVSGV-------------------EHVALAD-RREAIWSACRQAKTGDTILIAGKGHETY 466
Query: 359 QIEGDKKEFFDDREESREALQ 379
QI G + FDDRE +REAL+
Sbjct: 467 QIFGKEVHPFDDREVAREALR 487
>gi|237744234|ref|ZP_04574715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. 7_1]
gi|229431463|gb|EEO41675.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. 7_1]
Length = 485
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/373 (36%), Positives = 209/373 (56%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y + GD ++ TTP+++ + + K L E VVME SSH L LGR +DF
Sbjct: 131 IGTIEYKV-GDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGRVDVIDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D ++ V+NIDD + D
Sbjct: 190 DCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKD--KNDSVINIDDNYGKRLYDEFIVD 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ ++ + L + + + + ++ LLG N+YN L A+ +
Sbjct: 248 NPEIISYGIDGGDLEGEYLD------DGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G +E+I++ + + A PGR E ++ Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 ALKIGISMEEILKRVSNIKAAPGRFEALNCGQDYKVIVDYAHTPDALVNVIVAARNIKNV 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K+ D SD+ ILTSDNP E+P I D+ G
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
+ ++D Y P+ R A++ AV M E+ D++++ GKGHETY I G KK
Sbjct: 416 ----FIKSDDYIFEPD---------REKAIKAAVNMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|376260794|ref|YP_005147514.1| UDP-N-acetylmuramyl tripeptide synthetase [Clostridium sp. BNL1100]
gi|373944788|gb|AEY65709.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp. BNL1100]
Length = 487
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/382 (37%), Positives = 219/382 (57%), Gaps = 35/382 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ +V+ I G+ L + RTTP++ +Q+L M+ ++ VME SS GL L R
Sbjct: 129 GHNMGLIGTVANLI-GNQVLYTSRTTPESYDLQSLFNDMVEKKVDSAVMEVSSQGLELHR 187
Query: 62 CSEVDFDIAVFTNLTRDHM--DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
++ DFDI VFTN +RDH+ H T EEY NAKAKLF + V+NID +
Sbjct: 188 VAKCDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLFKMC-----RKAVINIDSEHGRK 242
Query: 120 F--IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+A+ N V+T+ + NK AD+ T +N+P G ++I + L G NI
Sbjct: 243 MAELAECN----VLTYGLSNK-ADIWASDIVKKTGHTYFKLNSPWGSIDIETDLQGEFNI 297
Query: 178 YNILAAVAVGIAV-GAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
YN LAA+ + G LE + G+ +V VPGR E + + V++DYAHTPD+L ++
Sbjct: 298 YNALAAIGSCCLIPGITLEHVKTGLTKV-TVPGRMESVKTGGNYSVLIDYAHTPDSLEQV 356
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V+E A R++++ GC G+ D+GKRP M +I+ + ++ TI+TSDNP E+P I++D+
Sbjct: 357 LKTVKEFAHGRVVSLFGCGGDRDKGKRPAMGEISGNIANFTIITSDNPRTENPEQIIEDI 416
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG+ T +Y+K + RR A++ A+ ++GD++++AGKGHE
Sbjct: 417 EAGIKNTNGKYIKITD------------------RRQAIKFALENAQDGDIIILAGKGHE 458
Query: 357 TYQIEGDKKEFFDDREESREAL 378
TYQ +K FD+RE E L
Sbjct: 459 TYQQFAEKTIHFDEREVVNELL 480
>gi|294785201|ref|ZP_06750489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Fusobacterium sp. 3_1_27]
gi|294486915|gb|EFG34277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Fusobacterium sp. 3_1_27]
Length = 485
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 208/373 (55%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y I GD E+ TTP+++ + + K L E VVME SSH L +GR VDF
Sbjct: 131 IGTIEYKI-GDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVEVVDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D + V+NIDD + D
Sbjct: 190 DYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDV--NNSVINIDDEYGKRLYDEFIVD 247
Query: 128 -VPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
++++ +++ + L + + + + ++ LLG N+YN L A+ +
Sbjct: 248 NSEIISYGIDSGDLEGDYLD------DGYIDIKYKKQVEKVKFALLGDFNLYNTLGAIGI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G +E+I++ + + A PGR E +D Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 ALKIGISMEEILKRVSTIKAAPGRFEALDCGQNYKVIVDYAHTPDALVNVIVAARNIKNV 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K+ D SD+ ILTSDNP E+P I D+ G
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
++K +DY F R A++ A+ M E+ D++++ GKGHETY I G KK
Sbjct: 416 -FIK--SDDY----------FFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|187779891|ref|ZP_02996364.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC
15579]
gi|187773516|gb|EDU37318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium sporogenes ATCC 15579]
Length = 482
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/392 (37%), Positives = 216/392 (55%), Gaps = 56/392 (14%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+L +++ YI G+ K+ES RTTP+++ +Q L M+ + VME SSH L L R
Sbjct: 131 GYKVGLLGTIANYI-GNKKIESNRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V+F A+FTNLT+DH+DFH T E Y N+K LF V+NIDD +
Sbjct: 190 VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA-----QNSVINIDDSYGEKVL 244
Query: 122 --AQGNPDVPVVTFAMENK---KAD---VHPLKFEL-SLFETQ---VLVNTPHGILEISS 169
A GN VT+ +E KA+ +H E ++F+ + + +N P
Sbjct: 245 KKALGNK----VTYGVEKSCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP-------- 292
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYA 227
G++NIYN L ++ + G L+ I + ++ +VPGRCE++ + G VIVDYA
Sbjct: 293 ---GKYNIYNALGSIGACLLEGISLQTIKEALGDI-SVPGRCEIVTKNYDLGYDVIVDYA 348
Query: 228 HTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNE 287
HTPD L +L + RE R+I+V GC G+ DR KRP+M K+ +D SD+ I+TSDNP E
Sbjct: 349 HTPDGLENILATAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSDLSDIAIITSDNPRTE 408
Query: 288 DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347
DP I+ D+L G+ E D Y + RR A++ A+ + +E D+
Sbjct: 409 DPSLIIKDVLEGI-----------EKDNYIVVEG---------RRDAIKKAMEIAKENDV 448
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+VVAGKGHE YQI D+ FD+RE E ++
Sbjct: 449 IVVAGKGHEDYQILKDRTIHFDEREVIEELIK 480
>gi|284929330|ref|YP_003421852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[cyanobacterium UCYN-A]
gi|284809774|gb|ADB95471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[cyanobacterium UCYN-A]
Length = 497
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/364 (37%), Positives = 198/364 (54%), Gaps = 28/364 (7%)
Query: 20 KLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDH 79
K S TTP + +Q +++ + + E V+E SSH L GR F++++FTNLT+DH
Sbjct: 154 KQTSIHTTPFSPELQAQLSQAVIDKNEYCVIEVSSHALVQGRVKGCGFNVSIFTNLTQDH 213
Query: 80 MDFHGTEEEYRNAKAKLFSRMVDPE--RHRKVVNIDDPNATSFIAQGNPDVPVVTFAMEN 137
+DFH E Y AK LFS PE + + VVNIDD I P V ++++EN
Sbjct: 214 LDFHKNLENYFLAKQLLFS----PEYLQGKAVVNIDDSYGERLIQYLGPQ-KVYSYSIEN 268
Query: 138 KKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDI 197
AD H + ++ TP G E S L+G+ N+ N+LAA+A + LE +
Sbjct: 269 TMADFHTTNLNYKHDRIEGILKTPGGNFEFQSPLVGKFNLSNLLAAIATLFHLNIDLETV 328
Query: 198 VRGIEEVDAVPGRCELID--EEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCA 255
+ + + VPGR E I+ E Q VIVDYAHTPD+L LL + R ++I V GC
Sbjct: 329 INKLPQFPGVPGRVEKIEVSEVQDISVIVDYAHTPDSLENLLKATRPFISGKVICVFGCG 388
Query: 256 GESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDY 315
G+ DR KR +M KI +D+++LTSDNP E+P IL D+L GV
Sbjct: 389 GDRDRSKRSIMGKICAKLADISVLTSDNPRTEEPEQILSDILEGV--------------- 433
Query: 316 YPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESR 375
P ++ R A++ A+ + GD V++ GKGHE YQI G +K +FDDRE+++
Sbjct: 434 ----PKNANFWVISNRTEAIKTAILKADPGDGVLIVGKGHENYQILGTEKIYFDDREQAK 489
Query: 376 EALQ 379
E+L+
Sbjct: 490 ESLK 493
>gi|206900924|ref|YP_002250976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dictyoglomus thermophilum H-6-12]
gi|206740027|gb|ACI19085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dictyoglomus thermophilum H-6-12]
Length = 491
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 211/377 (55%), Gaps = 25/377 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+R+G++ ++ Y I D S TTP +Q ++ KM+ + + ME SSH LAL R
Sbjct: 132 GIRSGLIGTIEYKID-DESYPSNFTTPQPQDLQEILRKMVDREVKFLAMEISSHALALKR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ AVFTNLT+DH+DFH T EEY AK K+F+ + D V+N D+ T I
Sbjct: 191 VDGISLKGAVFTNLTQDHLDFHKTMEEYFQAKLKIFNYLEDG--GFAVINRDN-EWTGRI 247
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ N V F + K D++ K E + + + TP G L I + L G+ NIYNIL
Sbjct: 248 SLPNRRV----FWVSLKNGDLYLKKHENTNNGMLLEIGTPLGDLIIDTKLKGKFNIYNIL 303
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AV V I +G PLEDI + + V GR ELI E Q F VIVDYAHTPD L +L +V+
Sbjct: 304 FAVGVLIGLGEPLEDISKFLSTFKGVKGRLELIREGQNFDVIVDYAHTPDGLFNVLQTVK 363
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
E R+I V GC G+ D KR M +I+ +D+ I+TSDNP EDPL I+ + G+
Sbjct: 364 EFTKGRVIVVFGCGGDRDPTKRDKMGEISARLADIVIVTSDNPRTEDPLKIIRQIEEGI- 422
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
+ G +DY F+ + R A++ A+ + EGD V++AGKGHE YQI
Sbjct: 423 ------RRVGRSDY----------FVIENREEAIKKAIEIAGEGDSVLIAGKGHEDYQII 466
Query: 362 GDKKEFFDDREESREAL 378
G+ K F D+E +++ +
Sbjct: 467 GNTKIPFSDQEVAKKYI 483
>gi|404495264|ref|YP_006719370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter metallireducens GS-15]
gi|418065731|ref|ZP_12703102.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter
metallireducens RCH3]
gi|123572782|sp|Q39YM4.1|MURE_GEOMG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|78192883|gb|ABB30650.1| UDP-N-acetylmuramylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter metallireducens GS-15]
gi|373561811|gb|EHP88037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter
metallireducens RCH3]
Length = 511
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 155/391 (39%), Positives = 221/391 (56%), Gaps = 13/391 (3%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ +L ++SY GD + +P TTP++V +Q + ++ G + VVME SSH L R
Sbjct: 129 GIPVAVLGTISYRF-GDKTIPAPHTTPESVDLQRTIRDLVDRGAQGVVMEVSSHALEQRR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPE----RHRKVVNIDDPNA 117
FD+ VFTNLTRDH+D+H E Y +KA+LF+ ++ + R V+N+DDP
Sbjct: 188 VDGCRFDVGVFTNLTRDHLDYHRDMESYFESKARLFTELLAADDTKPRRAAVINVDDPYG 247
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + PVV++ + + V S+ + TP G + S LLGR N+
Sbjct: 248 ARLAS--DAVAPVVSYGL-SPSVMVRAEMVTFSVDGISGTLVTPLGTIPFHSRLLGRFNL 304
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YNILAAVA G+A+G + I GIE VPGR E +D + V+VDYAHT DAL +L
Sbjct: 305 YNILAAVAAGVALGLSPDAIRGGIEGDVRVPGRLERVDNDHGITVLVDYAHTGDALENVL 364
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+V E+A RIITV GC G+ DRGKRP+M +IA SD++I+TSDNP ED I+ ++L
Sbjct: 365 KTVAEIATGRIITVFGCGGDRDRGKRPVMGEIAGRFSDLSIVTSDNPRTEDAGAIIGEIL 424
Query: 298 AGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
G+ ++E YG + + + RR A+R A + GD++++AGKGHE
Sbjct: 425 GGIRSLGLRE---YGAEELITGF-DAKGFAAVESRREAIRLAARVARPGDVLLLAGKGHE 480
Query: 357 TYQIEGDKKEFFDDREESREALQYVDELHQA 387
YQI G K FDDREE A + + Q
Sbjct: 481 DYQIIGTMKHHFDDREEVAAAFRELSSKGQG 511
>gi|260494182|ref|ZP_05814313.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. 3_1_33]
gi|260198328|gb|EEW95844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. 3_1_33]
Length = 485
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/373 (36%), Positives = 209/373 (56%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y + GD ++ TTP+++ + + K L E VVME SSH L LGR +DF
Sbjct: 131 IGTIEYKV-GDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGRVDVIDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D ++ V+NIDD + D
Sbjct: 190 DCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKD--KNDSVINIDDDYGKRLYDEFIID 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ ++ + L + + + + ++ LLG N+YN L A+ +
Sbjct: 248 NPEIISYGIDGGDLEGEYLD------DGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G +E+I++ + + A PGR E ++ Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 ALKIGISMEEILKRVSNIKAAPGRFEALNCGQDYKVIVDYAHTPDALVNVIVAARNIKNV 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K+ D SD+ ILTSDNP E+P I D+ G
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
+ ++D Y P+ R A++ AV M E+ D++++ GKGHETY I G KK
Sbjct: 416 ----FIKSDDYIFEPD---------REKAIKAAVNMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|171913324|ref|ZP_02928794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Verrucomicrobium spinosum DSM 4136]
Length = 507
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 202/382 (52%), Gaps = 39/382 (10%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
R G+L +V Y + GD K + TTP+++ +Q L+++M G AV ME SSH + R
Sbjct: 132 RCGLLGTVVYDVGGDLK-PATHTTPESLELQGLLSEMRDRGCVAVAMEVSSHAIDQHRTH 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
V F AVFTNL++DH+D+HGT EEY AK+KLFS + V+N+DD +
Sbjct: 191 GVPFAAAVFTNLSQDHLDYHGTMEEYFKAKSKLFSSTAASRSGKLVINVDDIWGRRLVDA 250
Query: 124 GNPDVPVVTFAME--------NKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+VT+ + N + D+ FEL +LV P +G+
Sbjct: 251 HKEHPGLVTYGLGVAADYRAVNPRYDLTGTSFELEHKGRSLLVRIPQ---------IGQF 301
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELID-EEQAFGVIVDYAHTPDALS 234
N+YN LAA+A +G L D V+ ++ +PGR E + + +F V VDYAHTPD L
Sbjct: 302 NVYNSLAALAAAHGMGCNLRDTVKAMQSSPQIPGRMERVTPDNHSFHVFVDYAHTPDGLV 361
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
L + R L P RIITV GC G+ DR KRPLM + + SD++ILTSDNP EDP I+D
Sbjct: 362 NALSTARALRPERIITVFGCGGDRDRLKRPLMARAVEEHSDISILTSDNPRTEDPQAIMD 421
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
D A G+T + + R+ A+ A+ EGD+VV+AGKG
Sbjct: 422 D--ARKGFTRSAHALIAD------------------RKEAIHTAIKGAREGDIVVIAGKG 461
Query: 355 HETYQIEGDKKEFFDDREESRE 376
HE YQ K FDDR +R+
Sbjct: 462 HEPYQDVQGVKHPFDDRRVARQ 483
>gi|320352818|ref|YP_004194157.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfobulbus
propionicus DSM 2032]
gi|320121320|gb|ADW16866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus
propionicus DSM 2032]
Length = 1011
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/400 (36%), Positives = 215/400 (53%), Gaps = 23/400 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKL----ESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGL 57
G R G++ +V+Y HG + L ++P TTPD V +Q L+ M NG V+ME SSH L
Sbjct: 135 GFRPGVIGTVNYRYHGADGLHIIQDAPLTTPDPVTLQGLLRTMADNGVTHVIMEVSSHAL 194
Query: 58 ALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVV---NIDD 114
R FD+A+FTNL+RDH+D+H + E Y AK +LF + + + VV +
Sbjct: 195 QQQRLGSTRFDVALFTNLSRDHLDYHQSMEVYFEAKKQLFHKHLKEQGVAVVVLGPQAEG 254
Query: 115 PNATSFIAQGNPDVPVVTFAMENK-KADVHPLKFELSLFETQVLVNTPHGILEISSGLLG 173
+ + P V+ + + H L + F + + + +S L G
Sbjct: 255 CDWGGLLTASLPAEQVIRCGLHGSCEVSAHQLTQTMEGFRCCLHLRGAE--VNFASPLTG 312
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE---LIDEEQAFG--VIVDYAH 228
+N+ N+LAA VG+ +G + + G+ V VPGR E L E+ G V VDYAH
Sbjct: 313 EYNVLNVLAAAGVGLGLGLVPDRFLEGLARVGRVPGRLERVRLPGEQIGSGPAVFVDYAH 372
Query: 229 TPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
TPDAL +L ++++L R++ V GC G+ DRGKRPLM ++A +D ++TSDNP E
Sbjct: 373 TPDALDNVLRNLKKLTTGRLLCVFGCGGDRDRGKRPLMGRVAAQLADAVVVTSDNPRTEA 432
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI---RRVAVRCAVAMGEEG 345
P I+D+++AGV E D + L + + + RR A+ A ++ G
Sbjct: 433 PEAIIDEIVAGV-----EAGGKSRTDAWALLNAAQPVDGYTVIADRRCAITAACSLAAPG 487
Query: 346 DMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDELH 385
D V++AGKGHETYQI G +K FFDDR+E+ L + +E H
Sbjct: 488 DSVLLAGKGHETYQIIGTEKHFFDDRQEATNGLLHWNERH 527
>gi|366166621|ref|ZP_09466376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Acetivibrio cellulolyticus CD2]
Length = 484
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 212/383 (55%), Gaps = 40/383 (10%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++S I GD L + RTTP++ +Q L +M+ +VVME SSH L L R
Sbjct: 129 GQKTGLIGTISNKI-GDEVLPTDRTTPESYDLQELFGEMVEKQVNSVVMEVSSHALDLHR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM------VDPERHRKVVNIDDP 115
S +FDI VFTNL+RDH+DFH T E Y AK KLF VD E RKVV
Sbjct: 188 VSCSEFDIGVFTNLSRDHLDFHKTFENYLAAKIKLFKMCKKGLINVDSEYGRKVVE---- 243
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
N + V TF +++ AD+ + + V TP +I+ + G+
Sbjct: 244 ---------NAECEVYTFGIDSS-ADIRAVDIVKHPDSVEFKVITPWFTGDIAVNIPGKF 293
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
++YN L A+ +G PLE I +G++ V VPGR E++ + +I+DYAH+PD+L
Sbjct: 294 SVYNALGAIGSCALMGIPLEYIQKGLKNV-TVPGRAEVVQTGTDYTIIIDYAHSPDSLEN 352
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +V+ AP R+I++ GC G+ D+ KRP+M +I+ +D T++TSDNP E+P I++D
Sbjct: 353 ILTTVKGYAPARVISLFGCGGDRDKTKRPIMGEISGKLADFTVITSDNPRTEEPAAIIND 412
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ G+ T Y+ + RR A++ A+ + D++V+AGKGH
Sbjct: 413 IEEGIKKTTSAYITIVD------------------RREAIKYAMQHAQPKDIIVLAGKGH 454
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
ETY + DK FD+RE RE L
Sbjct: 455 ETYIMLNDKTIHFDEREVVREIL 477
>gi|332707250|ref|ZP_08427303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Moorea producens 3L]
gi|332353984|gb|EGJ33471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Moorea producens 3L]
Length = 506
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 203/355 (57%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q + + G + VME SSH LA GR F++AVFTNLT+DH+D+H
Sbjct: 166 TTPFAVQLQQQLQLAVKAGAQMAVMEVSSHALAQGRIQGCPFEVAVFTNLTQDHLDYHQN 225
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
++Y +AKAKLFS D + R ++N DD I Q P V +++++N AD
Sbjct: 226 MDDYFSAKAKLFSS--DYLKGRAIINADDSYGERLIQQ-LPTEQVWSYSIQNPSADFWTK 282
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ +++TP G + +S L+G++N+ N+LAAV + +G LE + + +
Sbjct: 283 DLSYEPTGVRGIMHTPVGEVSFNSPLVGQYNLSNLLAAVGTVLELGLDLELVAAALAQFP 342
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I EQ VIVDYAHTPD+L LL + R ++I V GC G+ DR KR
Sbjct: 343 GVPGRMERVQIQPEQDISVIVDYAHTPDSLENLLRASRPFIEGKMICVFGCGGDRDRTKR 402
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA +DV ++TSDNP E+P IL+D+L G+ +++
Sbjct: 403 PKMGKIAAQLADVAVVTSDNPRTENPESILEDVLEGIPQSVEP----------------- 445
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + D R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++R+AL
Sbjct: 446 -MVICD-RATAIRTAILQAKPGDGVLIAGKGHEDYQILGTEKIHFDDREQARDAL 498
>gi|434393561|ref|YP_007128508.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Gloeocapsa sp. PCC 7428]
gi|428265402|gb|AFZ31348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Gloeocapsa sp. PCC 7428]
Length = 506
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/357 (41%), Positives = 200/357 (56%), Gaps = 25/357 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A G + VME SSH LA GR F++ VFTNLT+DH+DFH
Sbjct: 159 TTPFAVELQQQLAAARDAGCQWGVMEVSSHALAQGRVMGCPFEVGVFTNLTQDHLDFHKD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKK-ADVHP 144
E+Y AKA LFS D + R V+N DD IAQ P + +++ N + +D
Sbjct: 219 MEDYFAAKALLFSP--DYLQGRAVINADDAYGQRLIAQ-IPAQQLWRYSVHNAEGSDFWT 275
Query: 145 LKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEV 204
+++TP G + S L+G +N+ N+LA+VA + +G LE I + + +
Sbjct: 276 SDLNYEPTGVSGMLHTPKGDIAFRSPLVGEYNLSNMLASVAAALHLGVDLELIAQALPKF 335
Query: 205 DAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGK 262
VPGR E ID +Q VIVDYAHTPD+L LL + R P ++I V GC G+ DR K
Sbjct: 336 TEVPGRMERVQIDAKQDISVIVDYAHTPDSLENLLKASRPFIPGKMICVFGCGGDRDRTK 395
Query: 263 RPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNG 322
RP M IA +D+ ++TSDNP EDP IL D+LAG+ T+Q + G+
Sbjct: 396 RPKMGAIAAQLADIAVVTSDNPRTEDPERILQDILAGIPKTVQPKV-IGD---------- 444
Query: 323 HRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++R ALQ
Sbjct: 445 --------RASAIRTAILEAQPGDGVLIAGKGHEDYQILGTEKIHFDDREQARFALQ 493
>gi|307111173|gb|EFN59408.1| hypothetical protein CHLNCDRAFT_137921 [Chlorella variabilis]
Length = 873
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 154/408 (37%), Positives = 213/408 (52%), Gaps = 45/408 (11%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTN-LTRDHMDFHG 84
TTPDA+ +Q +A G ++E L GR VDFD+ V+TN G
Sbjct: 459 TTPDALHMQKALAGCADRGASVALVECDPASLGDGRADHVDFDVLVYTNSYAEKEAGAEG 518
Query: 85 TEEEYRNAKAKLFSRMV-DPERHRKVVNIDDPNATSFIAQGNPDV-PVVTFAMENKKADV 142
+ + A+LF R+ D ER R V+NIDDP V+T++ +++ AD+
Sbjct: 519 GSQACHDRVAELFRRVQGDVERQRAVINIDDPLGAELAQAAAAAGATVLTYSADSRDADI 578
Query: 143 HPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIE 202
+ K + S++ET+VLVNTP G L+I + LLGR N+ N+LAAV+ GIA G PL++IV GIE
Sbjct: 579 YAEKAKSSIWETEVLVNTPLGRLQIITPLLGRSNVCNVLAAVSTGIACGVPLKNIVAGIE 638
Query: 203 EVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGK 262
VD +PGRCE+IDE Q F V+VD A TP+ LSRLLD V+E +R++ V GC G
Sbjct: 639 AVDIIPGRCEIIDEGQPFSVVVDSASTPEQLSRLLDEVKEAGSKRVLLVFGCPG------ 692
Query: 263 RPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNG 322
T +A K D +T+D+P P D++ DM+ G+ E YP L +
Sbjct: 693 ---TTSMAHYKGDAIFITNDSPGASWPSDVIADMVGGL---PTEVTNKYTGTAYPFLQDP 746
Query: 323 HR-----------------LFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
HR +++ + R A+R A+ M D+VVVAGKGH +Q D
Sbjct: 747 HRVPHWFQKYMLQYQSVVGVYVIEDRFQAIRVAIGMARARDVVVVAGKGHIDWQEYWDGA 806
Query: 366 EF-----------FDDREESREALQYVDELHQ-AGIDTSEFPW-RLPE 400
EF FDDR E R AL + L ++T PW R PE
Sbjct: 807 EFDLEERTTLKSWFDDRVECRNALSKLPYLSGIKDLNTDVLPWTRYPE 854
>gi|402830150|ref|ZP_10878855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Capnocytophaga sp. CM59]
gi|402286207|gb|EJU34683.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Capnocytophaga sp. CM59]
Length = 483
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/387 (36%), Positives = 211/387 (54%), Gaps = 43/387 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G++S+++ YI+G ++E+ TTPD + + L+ +M+ G ME SSHG+A+
Sbjct: 129 LGYKVGLVSTIANYING-QRIETQNTTPDVLTLNELIQRMVMEGVTHCFMEVSSHGVAMH 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLT+DH+DFH T +YR+ K K F + + + NIDD N
Sbjct: 188 RIEGLHFAGGIFTNLTQDHLDFHKTLADYRDTKKKFFDSL--SKTSFALTNIDDKNG--- 242
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFE-LSLFETQVLVNTPHGIL------EISSGLLG 173
++ ++N A + + ++ F VL NT G+L E+ L+G
Sbjct: 243 -----------SYMLQNTSARTYSYSLKTMADFRATVLENTFSGMLLRISDKEVWVSLIG 291
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
R N YN+LA A I +G + ++ + ++ AV GR + +IVDYAHTPDAL
Sbjct: 292 RFNAYNLLAIYATAICLGEDSDRVLLALSKLTAVAGRFQYFVAPDKRTLIVDYAHTPDAL 351
Query: 234 SRLLDSVRELAP--RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
+L+++R + +++ITVVGC G D+GKRP+M IAT SD +LTSDNP +EDP
Sbjct: 352 ENVLETIRSIKQGNQQLITVVGCGGNRDKGKRPIMAHIATMLSDKVVLTSDNPRDEDPEA 411
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL DM AG+ K Y + + RR A+R A + + GD++++A
Sbjct: 412 ILRDMEAGI--------KAANQSKYMTVTD---------RRQAIRVACHLAKAGDIILLA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHETYQ K FDD EE A+
Sbjct: 455 GKGHETYQEVKGVKSHFDDLEEMINAI 481
>gi|228985702|ref|ZP_04145855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228774097|gb|EEM22510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 499
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/381 (36%), Positives = 213/381 (55%), Gaps = 25/381 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ + + G + T + +Q + M + + VME +S GL + R
Sbjct: 137 GYHTGLMGNNGVKV-GSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMER 195
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRKVVNIDDPNA 117
+F IAVFTNLT+DH+D+H T +EY++ K+ LF+R+ + ++ V+N DDP+
Sbjct: 196 VKGCNFKIAVFTNLTQDHLDYHETFDEYKHVKSLLFARLGNDLSTIDKKIAVLNADDPSV 255
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + V+T+ + N ADV LS + LV++ +G +E++ L+GR N+
Sbjct: 256 EYF--KKITSAEVITYGIHNG-ADVQAKNITLSPKGIRFLVSSFNGEIEVNLNLVGRFNV 312
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+ V + G PL +I + + ++ GR E+IDE Q F VIVDYAHTPDAL +L
Sbjct: 313 YNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDENQDFLVIVDYAHTPDALENVL 372
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E + ++ITV GC G+ D KR +M IA SD +TSDNP +EDP I+ D+
Sbjct: 373 STISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIE 432
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G +L+ +Y + R +A+ A+ M D+V++AGKGHET
Sbjct: 433 KG-------FLQNNNLNYKVEVD----------RELAINHAINMASSNDIVLIAGKGHET 475
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI D FDD+E++R+A+
Sbjct: 476 YQILKDSTIHFDDKEKARQAI 496
>gi|34762973|ref|ZP_00143951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
gi|256845498|ref|ZP_05550956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. 3_1_36A2]
gi|421144759|ref|ZP_15604665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
[Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
gi|27887361|gb|EAA24453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
gi|256719057|gb|EEU32612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. 3_1_36A2]
gi|395488807|gb|EJG09656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
[Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
Length = 485
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 207/373 (55%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y I GD E+ TTP+++ + + K L E VVME SSH L +GR VDF
Sbjct: 131 IGTIEYKI-GDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVEVVDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D + V+NIDD + D
Sbjct: 190 DYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDV--NNSVINIDDEYGKRLYDEFIVD 247
Query: 128 -VPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
++++ ++ + L + + + + ++ LLG N+YN L A+ +
Sbjct: 248 NSEIISYGIDGGDLEGDYLD------DGYIDIKYKKQVEKVKFALLGDFNLYNTLGAIGI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G +E+I++ + + A PGR E +D Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 ALKIGISMEEILKRVSTIKAAPGRFEALDCGQNYKVIVDYAHTPDALVNVIVAARNIKNV 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K+ D SD+ ILTSDNP E+P I D+ G
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
++K +DY F R A++ A+ M E+ D++++ GKGHETY I G KK
Sbjct: 416 -FIK--SDDY----------FFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|404329219|ref|ZP_10969667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Sporolactobacillus vineae DSM 21990 = SL153]
Length = 490
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/382 (37%), Positives = 214/382 (56%), Gaps = 29/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL TG++ ++ + +++ TTP+ ++ +AKM G E+VVME SS+ L GR
Sbjct: 127 GLATGLIGTMGMHFK-NHQAAVVNTTPEVHLIHENLAKMKEQGAESVVMETSSNALYDGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD-----PERHRKVVNIDDPN 116
DF++ +FTNLT DH+D HGT ++Y AK+ LF+++ + E V+N DDP
Sbjct: 186 VRGCDFNVGIFTNLTEDHLDLHGTMKDYMYAKSILFTQLGNRYGEHGESKVAVLNQDDP- 244
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
S + + V+T+ +++ AD +++ T +N ++ L+G+ +
Sbjct: 245 -VSDVYRHMTAAHVITYGIDHP-ADFRAESIQITPQGTAFTLNIRGTAYPVAMKLIGKFS 302
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN LAA+A G ++ +E+V V GR E + Q F VIVDY+HTPD+L
Sbjct: 303 VYNALAALAACSVRGFDTYRMIHALEQVPGVSGRFESVRAGQDFSVIVDYSHTPDSLENA 362
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +++E A RI+TVVGC G+ + GKRP+M KIA D SD+ ILTSDNP EDP IL +M
Sbjct: 363 LATIKEFARGRILTVVGCGGDREHGKRPIMAKIAVDNSDLAILTSDNPRTEDPEAILAEM 422
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
GV + Y K + RR A+R AV + D++++AGKGHE
Sbjct: 423 ETGVKG--RSYKKITD------------------RREAIRYAVRAAQPDDIILIAGKGHE 462
Query: 357 TYQIEGDKKEFFDDREESREAL 378
TYQI G K FDDRE ++ A+
Sbjct: 463 TYQIIGKVKHHFDDREIAKNAI 484
>gi|440682727|ref|YP_007157522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Anabaena cylindrica PCC 7122]
gi|428679846|gb|AFZ58612.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Anabaena cylindrica PCC 7122]
Length = 495
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/356 (40%), Positives = 200/356 (56%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A ++ G E VME SSH LA GR F++ VF+NLT+DH+D+H
Sbjct: 156 TTPFAVELQQQLATAVNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHKD 215
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKA LFS D R V+N DD IA N + V ++++ + AD
Sbjct: 216 MEDYFAAKALLFSP--DYLHGRAVINADDEYGKRLIASLNRER-VWSYSVNDNNADFWMS 272
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+++TP G + +S L+G++N+ N+LAAV + +G L + I +
Sbjct: 273 GLSYQPHGVSGMLHTPKGDIAFNSPLVGQYNLENLLAAVGAVLHLGLDLHLVTNAISDFP 332
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I ++Q VIVDYAHTPD+L LL + R ++I V GC G+ DR KR
Sbjct: 333 GVPGRMERVQISDQQDVSVIVDYAHTPDSLENLLKAARPFISGKMICVFGCGGDRDRTKR 392
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA +DV ++TSDNP EDP IL D+LAG+ T+Q
Sbjct: 393 PKMGKIAAQLADVAVVTSDNPRTEDPEKILQDVLAGIPDTVQP----------------- 435
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+ + D R A+ A+ + GD +++AGKGHE YQI G +K FDDRE++REALQ
Sbjct: 436 -MVICD-RATAIHTAILQAQPGDGILLAGKGHEDYQILGTEKIHFDDREQAREALQ 489
>gi|433655387|ref|YP_007299095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293576|gb|AGB19398.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 484
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/384 (36%), Positives = 225/384 (58%), Gaps = 43/384 (11%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I GD + RTTP+++ +Q + M+ G + VVME SSH LAL R
Sbjct: 131 KVGLIGTIQNMI-GDKVYSTERTTPESLDLQRYLRLMVDEGVKYVVMEVSSHSLALNRVD 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E DFDIAVFTNLT+DH+DFH T ++Y NAKAKLF RM + V+NIDD + +SFI +
Sbjct: 190 ECDFDIAVFTNLTQDHLDFHKTMDDYANAKAKLF-RMA---KTACVINIDD-DYSSFIIE 244
Query: 124 GNPDVPVVTFAMENK--------KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
N + VVT+ +++ K D+ K+ + + + + +I+ + G
Sbjct: 245 -NSNAKVVTYGIKDYAYIMAKDIKNDIKGAKYTVQIEDIKS---------DIALKIPGLF 294
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
++YN LAA++V +G PL+ + +++V + GR E++D + + V++DYAHTPD L
Sbjct: 295 SVYNSLAAISVAFILGIPLQSVKMALKDV-KIKGRFEVLDIDAPYNVVIDYAHTPDGLEN 353
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L+ + E R I + GC G+ D+GKRP M ++A +D I+TSDNP +EDP+ I+ +
Sbjct: 354 LMKAFGEYDTGRKILLFGCGGDRDKGKRPKMGEVAGKYADFVIITSDNPRSEDPMQIISE 413
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ G+ T Y K EN R+ A++ A+++ ++ D+V++AGKGH
Sbjct: 414 IEMGIKNTNCPY-KIIEN-----------------RKEAIKYALSIAKDNDIVILAGKGH 455
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
E+YQ+ D+ FD+RE +E L
Sbjct: 456 ESYQVLKDRVIDFDEREIVKEILN 479
>gi|390934665|ref|YP_006392170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570166|gb|AFK86571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 484
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 142/384 (36%), Positives = 224/384 (58%), Gaps = 43/384 (11%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I GD + RTTP+++ +Q + M+ G + VVME SSH LAL R
Sbjct: 131 KVGLIGTIHNMI-GDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVMEVSSHSLALNRVD 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E FDIAVFTNLT+DH+DFH T +EY NAKAKLF RM + V+NIDD + +SF+ +
Sbjct: 190 ECKFDIAVFTNLTQDHLDFHKTMDEYANAKAKLF-RMA---KTACVINIDD-DYSSFMIE 244
Query: 124 GNPDVPVVTFAMENK--------KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
N + VVT+ +++ K D+ KF + + + + EI+ + G
Sbjct: 245 -NSNAKVVTYGIKDYAYIMAKDIKNDIKGAKFTVQIEDIKS---------EIALKIPGLF 294
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
++YN LAA++V +G PL+ + +++V + GR E++D E + V++DYAHTPD L
Sbjct: 295 SVYNSLAAISVAFILGIPLQSVKMALKDV-KIKGRFEVLDLEVPYNVVIDYAHTPDGLEN 353
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L+ + E + I + GC G+ D+GKRP M ++A +D I+TSDNP +E+P+DI+ +
Sbjct: 354 LMKAFGEYNTGKKILLFGCGGDRDKGKRPKMGEVAGKYADFVIITSDNPRSEEPIDIIRE 413
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ G+ T Y + D R+ A++ A+++ ++ D+V++AGKGH
Sbjct: 414 IEKGIKNTKCPY-----------------TIIED-RKEAIKYALSIAKDNDVVILAGKGH 455
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQ+ DK FD+R+ RE L
Sbjct: 456 ETYQVLKDKVIDFDERDIVREILN 479
>gi|428202340|ref|YP_007080929.1| UDP-N-acetylmuramyl tripeptide synthetase [Pleurocapsa sp. PCC
7327]
gi|427979772|gb|AFY77372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pleurocapsa sp. PCC
7327]
Length = 497
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/337 (41%), Positives = 194/337 (57%), Gaps = 24/337 (7%)
Query: 44 GTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP 103
G + VME SSH LA GR FD+ VFTNLT+DH+DFH E+Y +AKA LFS D
Sbjct: 178 GNQYAVMEVSSHALAQGRVKGCSFDVGVFTNLTQDHLDFHKDMEDYFSAKALLFSP--DY 235
Query: 104 ERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHG 163
+ R + N+DD I + D V ++++ N AD + + +++TP G
Sbjct: 236 LKGRAIANLDDSYGKRLIEALDSD-KVWSYSVSNPAADFYTAQLNYESTGVSGVMHTPVG 294
Query: 164 ILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE--LIDEEQAFG 221
+ S L+G+ N+ N+LAAVA + +G LE ++ + + VPGR E I E Q G
Sbjct: 295 QISFRSPLVGQFNLSNLLAAVAAVLHLGLNLEIVIEQLLKFPGVPGRMERVQISENQDIG 354
Query: 222 VIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTS 281
VIVDYAHTPD+L LL + R ++I V GC G+ DR KRP+M KIA + +DV ++TS
Sbjct: 355 VIVDYAHTPDSLENLLKAARPFISGKMICVFGCGGDRDRTKRPIMGKIAAELADVAVVTS 414
Query: 282 DNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAM 341
DNP EDP IL D++AG+ +++ + + D R A+ A+
Sbjct: 415 DNPRTEDPKRILQDIVAGIPASVKP------------------IVICD-RATAIHQAIQD 455
Query: 342 GEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ GD VV+AGKGHE YQI G +K FDDRE++REAL
Sbjct: 456 AKPGDGVVIAGKGHEDYQILGTEKIHFDDREQAREAL 492
>gi|336418605|ref|ZP_08598878.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Fusobacterium sp. 11_3_2]
gi|336164451|gb|EGN67357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Fusobacterium sp. 11_3_2]
Length = 485
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 210/373 (56%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y + GD ++ TTP+++ + + K L E VVME SSH L LGR +DF
Sbjct: 131 IGTIEYKV-GDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGRVDVIDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D ++ V+NIDD + D
Sbjct: 190 DCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKD--KNDSVINIDDDYGKRLYDEFIVD 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ ++ + L + + + + ++ LLG N+YN L A+
Sbjct: 248 NPEIISYGIDGGDLEGEYLD------DGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGT 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G +E+I++ + + A PGR E ++ Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 ALKIGISMEEILKRVSNIKAAPGRFEALNCGQDYKVIVDYAHTPDALVNVIVAARNIKNV 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K+ D SD+ ILTSDNP E+P I D+ G
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
++K +DY +F D R A++ AV M E+ D++++ GKGHETY I G KK
Sbjct: 416 -FIK--SDDY---------IFESD-REKAIKAAVNMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|334117411|ref|ZP_08491502.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Microcoleus vaginatus FGP-2]
gi|333460520|gb|EGK89128.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Microcoleus vaginatus FGP-2]
Length = 508
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 143/356 (40%), Positives = 203/356 (57%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A+ + G + VME SSH LA R F++AVFTNLT+DH+D+H
Sbjct: 168 TTPFAVDLQKQLAEAVAAGCKHGVMEVSSHALAQQRVLGCSFEVAVFTNLTQDHLDYHRD 227
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AK+ LF D +R V+NIDDP D V +++ K AD++
Sbjct: 228 MEDYFEAKSLLFGS--DYLANRAVINIDDPYGQRIYETLKSDR-VWSYSTVLKTADLYAF 284
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
E + +++TP G S L+G+ N+ N+LAAV + +G L IV + +
Sbjct: 285 DLEYQPNGVKGMLHTPKGETTFSLPLVGQFNLSNMLAAVGAVLELGLDLSAIVEKLSQFS 344
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q VIVDYAHTPD+L LL + R P ++I V GC G+ DR KR
Sbjct: 345 GVPGRMERVQISPDQDISVIVDYAHTPDSLENLLKASRPFIPGQMICVFGCGGDRDRTKR 404
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P+M KI + +D+T++TSDNP E+P IL+D+LAG+ ++
Sbjct: 405 PIMGKIVAELADLTVVTSDNPRTENPDRILEDILAGIPAAVKP----------------- 447
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+ L D R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++R+AL+
Sbjct: 448 -MVLCD-RAAAIRTAIMEAKPGDGVLIAGKGHEDYQILGTEKVHFDDREQARDALK 501
>gi|154494020|ref|ZP_02033340.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC
43184]
gi|423722749|ref|ZP_17696902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides merdae CL09T00C40]
gi|154086280|gb|EDN85325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Parabacteroides merdae ATCC 43184]
gi|409242022|gb|EKN34787.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides merdae CL09T00C40]
Length = 490
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 209/381 (54%), Gaps = 29/381 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI G+ + + TTPD V + NLMA+M+ G E ME SSH +
Sbjct: 136 MGHKVGLLSTVCNYIDGE-AIPTDHTTPDPVTLHNLMARMVEAGCEYAFMEVSSHSIDQK 194
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F+ +FTNLTRDH+D+H T E Y AK K F + P + N DD
Sbjct: 195 RISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PTSAFALTNADDK--AGL 250
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +T+++ AD E T++LVN E+ + +GR N YN+
Sbjct: 251 VMLQNTAARKLTYSLRT-LADFKGKILESHFEGTEMLVNGR----EVMTRFVGRFNAYNL 305
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +++G E+++ + ++ +V GR + I + + IVDYAHTPDAL+ +L+S+
Sbjct: 306 LAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTIQSPKGYTAIVDYAHTPDALTNVLNSI 365
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ R+ITVVGC G D+GKRP+M K A SD ILTSDNP E+P +I+ DM+A
Sbjct: 366 HEVLNGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSDQLILTSDNPRFEEPDEIIKDMVA 425
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ E H L + D R A++ A + +GD+++VAGKGHE Y
Sbjct: 426 GLNAADME----------------HTLCITD-RAQAIKTATMLARKGDVILVAGKGHEDY 468
Query: 359 QIEGDKKEFFDDREESREALQ 379
Q K FDDRE+ +E +
Sbjct: 469 QEVKGVKHHFDDREQLKEIFK 489
>gi|169831598|ref|YP_001717580.1| UDP-N-acetylmuramyl tripeptide synthetase [Candidatus Desulforudis
audaxviator MP104C]
gi|169638442|gb|ACA59948.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis
audaxviator MP104C]
Length = 499
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 145/372 (38%), Positives = 207/372 (55%), Gaps = 27/372 (7%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
G++ ++ I GD + TTP+++ +Q L+ +M G VV+E SSH L L R
Sbjct: 132 VGLIGTIHNLI-GDEVVPVRHTTPESLDLQRLLRRMADAGVTDVVLEVSSHALRLSRVHG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--A 122
+ F+ AVFTNLT+DH+DFH E+Y AKA+LF+ + E ++N DDP +
Sbjct: 191 LSFEAAVFTNLTQDHLDFHTDFEDYFAAKAQLFTGL--GEEAAAIINRDDPYGVRLLDLT 248
Query: 123 QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILA 182
+G V A + + A V P+ + + L+ + G ++ L G N+YN LA
Sbjct: 249 RGCRITYAVHQAADVRAAGVRPVPGGV-----EFLLESEWGSAPVALRLSGLFNVYNALA 303
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRE 242
A VG+ G E+I + V VPGR E +D+ Q + VI+DYAHTPD L LL + RE
Sbjct: 304 AACVGLVRGFTPEEIAGVLGRVRGVPGRFERVDQGQEYTVIIDYAHTPDGLENLLRAARE 363
Query: 243 LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGW 302
+AP R+I+V GC G+ DR KRPLM I+ +D ++LTSDNP EDPL I+ D
Sbjct: 364 IAPGRLISVFGCGGDRDRTKRPLMGAISARGADYSVLTSDNPRTEDPLAIIMD------- 416
Query: 303 TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEG 362
++E + D Y +P+ RR A+R A GD+V++AGKGHE YQI G
Sbjct: 417 -IEEGYRRVRPDGYAVVPD---------RREAIRHAFERARPGDVVIIAGKGHEDYQIIG 466
Query: 363 DKKEFFDDREES 374
K+ FDDR E+
Sbjct: 467 TKRLKFDDRREA 478
>gi|90020490|ref|YP_526317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Saccharophagus degradans 2-40]
gi|89950090|gb|ABD80105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Saccharophagus degradans 2-40]
Length = 518
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 208/371 (56%), Gaps = 36/371 (9%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N ++ TTP A+ Q ++A+ L AV ME SSHGLA GR ++VDF+ A+FTNL+RD
Sbjct: 161 NLTDTGLTTPSALDCQKILAE-LQQQVGAVAMEVSSHGLAQGRVADVDFNGAIFTNLSRD 219
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG-NPDVPVVTFAMEN 137
H+D+H + EEY KA LF+R E V+N DD + + G P ++++
Sbjct: 220 HLDYHASLEEYAATKAALFAR---EELSFVVINADDAVGVNILTNGVAPQAITYSYSLGG 276
Query: 138 KKADV---------HPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGI 188
++A V H +++ S +T ++TP G E+++GL+GR+N+ N+LA +
Sbjct: 277 EQALVAQSENTIVAHSIEWGSS--QTVAQLHTPWGAAELATGLVGRYNLSNVLAVLTTAC 334
Query: 189 AVGAPLEDIVRGIEEVDAVPGRCELIDE-EQAFGVIVDYAHTPDALSRLLDSVRELAPRR 247
A+G PL D+V ++ + A PGR + ++ EQ V VDYAHTPDAL ++L V +
Sbjct: 335 ALGYPLVDVVAQVKTLQAAPGRLQRVNSSEQPLAVFVDYAHTPDALEKVLSEVAAYTQGK 394
Query: 248 IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEY 307
+ V+GC G D GKRPLM ++A ++ +LTSDNP +E+P IL DMLAG
Sbjct: 395 LWVVIGCGGNRDVGKRPLMAEVAERLANCVVLTSDNPRDENPELILKDMLAG-------- 446
Query: 308 LKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEF 367
L N + R+ A+ AVA E D +V+AGKGHE YQ+ +K
Sbjct: 447 -----------LKNKDAAMVIADRKNAIEYAVANAAENDAIVIAGKGHENYQLVKGEKLP 495
Query: 368 FDDREESREAL 378
FDD ++E L
Sbjct: 496 FDDALIAKEFL 506
>gi|336401200|ref|ZP_08581972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Fusobacterium sp. 21_1A]
gi|336161557|gb|EGN64558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Fusobacterium sp. 21_1A]
Length = 485
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/373 (36%), Positives = 208/373 (55%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y + GD ++ TTP+++ + + K L E VVME SSH L LGR +DF
Sbjct: 131 IGTIEYKV-GDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGRVDVIDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D ++ V+NIDD + D
Sbjct: 190 DCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKD--KNDSVINIDDDYGKRLYDEFIVD 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ ++ + L + + + + ++ LLG N+YN L A+
Sbjct: 248 NPEIISYGIDGGDLEGEYLD------DGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGT 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G +E+I++ + + A PGR E ++ Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 ALKIGISMEEILKRVSNIKAAPGRFEALNCGQDYKVIVDYAHTPDALVNVIVAARNIKNV 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K+ D SD+ ILTSDNP E+P I D+ G
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
+ ++D Y P+ R A++ AV M E+ D++++ GKGHETY I G KK
Sbjct: 416 ----FIKSDDYIFEPD---------REKAIKAAVNMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|340749658|ref|ZP_08686511.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium mortiferum ATCC 9817]
gi|229421491|gb|EEO36538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium mortiferum ATCC 9817]
Length = 481
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 136/375 (36%), Positives = 207/375 (55%), Gaps = 28/375 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ + +V Y I GD +E+P TTP+++ + + K + G E +VME SSH L+LGR
Sbjct: 128 KVARIGTVEYKI-GDEVIEAPNTTPESLDIVKMCKKAVEKGLEYLVMEVSSHALSLGRVD 186
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
++FD+A FTNLT DH+D+H + Y AK KLF+ + D ++ +NIDD +
Sbjct: 187 MLEFDVASFTNLTLDHLDYHENMDNYFQAKRKLFTMLKDSKKSS--INIDDIYGDRLYKE 244
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
+T K AD+ E V +N + E +LGR+N+YN+L
Sbjct: 245 FGGYSYSLT-----KSADLTGEIVEFHSDGQFVRLNLMGEMFEEKLAILGRYNLYNVLGV 299
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+ + + +G I+ ++++ PGR EL++ Q + V+VDYAHT DAL +L S+ EL
Sbjct: 300 IGIALQLGIGKNIILEKLKDIKGAPGRFELVNCGQDYIVVVDYAHTGDALENILKSINEL 359
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
R+ITV GC G+ D KRP+M +IA SD+ ILTSDNP E+P I++D+ G+
Sbjct: 360 KKGRVITVFGCGGDRDATKRPIMGEIAQRLSDIAILTSDNPRTENPHLIIEDVKKGM--- 416
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
NG + + R A+ A+ + ++ D++++AGKGHETYQI G
Sbjct: 417 -----------------NGDHYLVEEDREQAIVKAIEIAQKNDIILIAGKGHETYQILGR 459
Query: 364 KKEFFDDREESREAL 378
KK FDDRE +R +
Sbjct: 460 KKIHFDDREIARREI 474
>gi|428319198|ref|YP_007117080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Oscillatoria nigro-viridis PCC 7112]
gi|428242878|gb|AFZ08664.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Oscillatoria nigro-viridis PCC 7112]
Length = 516
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 202/356 (56%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A+ + G + VME SSH LA R F++AVFTNLT+DH+D+H
Sbjct: 179 TTPFAVDLQKQLAEAVVAGCKHGVMEVSSHALAQQRVLGCSFEVAVFTNLTQDHLDYHRD 238
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AK+ LF D ++R ++N+DDP + D V +++ K AD++
Sbjct: 239 MEDYFEAKSLLFGS--DYLKNRAIINLDDPYGQRIVESLKSDR-VWSYSTVLKTADLYAF 295
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ + +++TP G S L+G+ N+ N+LAAV + +G L IV + +
Sbjct: 296 DLQYQPNGVKGMLHTPKGETAFSLPLVGQFNLSNMLAAVGAVLELGLDLSAIVEKLSQFS 355
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q VIVDYAHTPD+L LL + R P ++I V GC G+ DR KR
Sbjct: 356 GVPGRMERVQISPDQDISVIVDYAHTPDSLENLLKASRPFIPGQMICVFGCGGDRDRTKR 415
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P+M KI + +D+ ++TSDNP E+P ILDD+LAG+ P
Sbjct: 416 PIMGKIVAELADLAVVTSDNPRTENPDRILDDILAGI-------------------PAAV 456
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+ + R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++R+AL+
Sbjct: 457 KPIVMCDRAAAIRTAIMDAKPGDGVLIAGKGHEDYQILGTEKVHFDDREQARDALK 512
>gi|168186152|ref|ZP_02620787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum C str. Eklund]
gi|169295817|gb|EDS77950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum C str. Eklund]
Length = 483
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 138/377 (36%), Positives = 212/377 (56%), Gaps = 38/377 (10%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++S +I G+ K++S RTTP+++ + + KM E VME SSH L+L R
Sbjct: 129 GHSTGLIGTISNFI-GNEKIKSERTTPESLELHEMFKKMKDKNIEYCVMEVSSHSLSLDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
++F +FTNLT+DH+DFH T E Y AK +F + ++NIDD +
Sbjct: 188 VYGLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNAKNS-----IINIDDTYGERVL 242
Query: 122 AQGNPDVP----VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
DVP +T++ E KKAD+ + ++ I+ + G +N+
Sbjct: 243 ----NDVPDSSNKITYSTE-KKADLFAKDIVNYARGAEFILCYKSEETHINLSIPGIYNV 297
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQ--AFGVIVDYAHTPDALSR 235
YN L + ++ G +ED+ +G+E V VPGRCE +E F VI+DYAHTPD L
Sbjct: 298 YNALCSAGACLSEGISMEDVKKGLESV-VVPGRCENATKEYDLGFDVIIDYAHTPDGLEN 356
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L++ R+ R+I+V GC G+ D+ KRP+M KI +D SD+ I+TSDNP E+P +I+ D
Sbjct: 357 ILETARDFTKGRLISVFGCGGDRDKTKRPIMGKIGSDMSDIAIVTSDNPRTEEPSEIIKD 416
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
++ G+ + D Y + N R+ A++ A+ + ++GD++VVAGKGH
Sbjct: 417 VVEGI-----------KKDNYIVVEN---------RKEAIKKAIEIAKKGDVIVVAGKGH 456
Query: 356 ETYQIEGDKKEFFDDRE 372
E YQI DK FD+RE
Sbjct: 457 EDYQILKDKTIHFDERE 473
>gi|404493853|ref|YP_006717959.1| UDP-N-acetylmuramylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pelobacter carbinolicus DSM 2380]
gi|77545884|gb|ABA89446.1| UDP-N-acetylmuramylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pelobacter carbinolicus DSM 2380]
Length = 507
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 149/388 (38%), Positives = 214/388 (55%), Gaps = 21/388 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R +L +V Y G + L S TTP++V + +A G +A+V+E SSH L R
Sbjct: 129 GYRPAVLGTVDYRFEGAH-LPSSHTTPESVDLMETIADFRGRGADALVLEVSSHSLEQRR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V FD+ VFTNLT +H+D+HG E Y AK +LF+ + D + V N DD S+
Sbjct: 188 VDGVWFDVGVFTNLTPEHLDYHGDLETYFGAKLRLFNGLGDRSPRQVVANSDD----SWG 243
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
A+ +P V + DV +S+ + T G + S L+G +N+ N+L
Sbjct: 244 ARLGAMLPAVIRCGHASECDVTADDVTISVAGIAGSLRTARGTAALQSPLVGDYNLQNLL 303
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
A VG A+ I + + + VPGR E I E+ V+VDYAHT DAL +L ++R
Sbjct: 304 CAAGVGAALDMVPATIAKALAQAPQVPGRLESIANERGALVLVDYAHTGDALENVLVTLR 363
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
+L PRR++ V GC G+ D GKRP+M +IA +DV ILTSDNP +EDPL I+ + +G+
Sbjct: 364 QLQPRRLLCVFGCGGDRDAGKRPVMGEIAARLADVAILTSDNPRSEDPLAIMQQVESGLR 423
Query: 302 ------WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
W++Q+ + Y L L D RR A+ AV++ + D+++VAGKGH
Sbjct: 424 RIHEEPWSLQQARQAAGRGY---------LSLSD-RREAICFAVSLLQPDDVLLVAGKGH 473
Query: 356 ETYQIEGDKKEFFDDREESREALQYVDE 383
E YQI G ++ FDDREE R+AL E
Sbjct: 474 EDYQIIGRQRLHFDDREELRKALTAAAE 501
>gi|262067014|ref|ZP_06026626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Fusobacterium periodonticum ATCC 33693]
gi|291379274|gb|EFE86792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Fusobacterium periodonticum ATCC 33693]
Length = 485
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 140/373 (37%), Positives = 205/373 (54%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y I GD E+ TTP+++ + + K L E VVME SSH L +GR +DF
Sbjct: 131 IGTIEYKI-GDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVDVLDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D + V NIDD + D
Sbjct: 190 DYALFTNLTQDHLDYHVTMENYFQAKRKLFLKLKDT--NNSVFNIDDKYGKKLYDEFIED 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ ++ + L + + + + ++ LLG N+YN L AVA+
Sbjct: 248 NPEIISYGIDGGDLEGEYLD------DGYIDIKFKEKVEKVKFALLGDFNLYNTLGAVAI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G EDI+ I + A PGR E ++ Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 AVKMGIKWEDILERISNIKAAPGRFEALNCGQDYKVIVDYAHTPDALVNVIVAARNIRNG 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K A + SD+ ILTSDNP E P I D+ G
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKTG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
+ +ND Y P+ R A++ A+ M E+ D++++ GKGHETY I G KK
Sbjct: 416 ----FAKNDDYFFEPD---------REKAIKLAINMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|374583033|ref|ZP_09656127.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfosporosinus
youngiae DSM 17734]
gi|374419115|gb|EHQ91550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfosporosinus
youngiae DSM 17734]
Length = 495
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 142/379 (37%), Positives = 210/379 (55%), Gaps = 25/379 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I G + RTTP+A+ VQ L+ +M+ G VME SSH L LGR
Sbjct: 132 GKKVGLIGTLGSRIDG-RTIPGDRTTPEAIDVQKLLGEMVAEGVSLAVMEVSSHALVLGR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV-DPERHRKVVNIDDPNATSF 120
+ +FD +FTNLT+DH+D+H T E+Y AK++LF+ + D + ++N DDP A
Sbjct: 191 VAGCEFDAGIFTNLTQDHLDYHKTMEDYLYAKSRLFADLKGDKQPKISILNGDDP-AFEK 249
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ Q + VV++ + N AD E++ + V+ + +I G ++YN
Sbjct: 250 LRQASA-ATVVSYGIHNS-ADYRAENVEVTTEGVRFQVHFRGAVRDIWYATPGFFSVYNA 307
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA A G+ G E + + E+ VPGR E I Q F VIVDYAHTPD L ++ +
Sbjct: 308 LAAFAWGVERGYSPEIVAEALAEISGVPGRFESIRLGQPFQVIVDYAHTPDGLENVVRTA 367
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R+ R++TV GC G+ DR KRPLM ++A SD ++TSDNP EDP I+ ++L GV
Sbjct: 368 RDFTKGRLLTVFGCGGDRDRTKRPLMGEVAAQWSDYLLVTSDNPRTEDPGQIIREILTGV 427
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+Y+ + RR A+ A + + D +++AGKGHETYQI
Sbjct: 428 SGV--DYVAIAD------------------RREAIWSACRLAKPRDTILIAGKGHETYQI 467
Query: 361 EGDKKEFFDDREESREALQ 379
G + FDDRE +REAL+
Sbjct: 468 FGTEVHPFDDREVAREALR 486
>gi|452992692|emb|CCQ95851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium ultunense Esp]
Length = 487
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 131/380 (34%), Positives = 209/380 (55%), Gaps = 24/380 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I DN ++ TTP+++ +Q + KM+ +ME SSH L L R
Sbjct: 132 KAGLIGTLGSIID-DNVVDIKNTTPESLTIQEHLRKMVDVNIGYCIMEVSSHSLDLKRVE 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
+DF + +FTNLT DH+D+H T E Y N+K KLF+R + ++N DDP +
Sbjct: 191 YMDFQVGIFTNLTEDHLDYHITMENYYNSKLKLFNRT----KKYNIINGDDPFGRRMLDD 246
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
N +P++T+ +E K DV+ + +NTP G + I+ LLGR N+YN LAA
Sbjct: 247 INISIPIITYGIE-KNWDVYATDVNCHIKGVNFTLNTPKGSVPINLNLLGRFNVYNALAA 305
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+ GIA L I GIE V + GR E++ ++ F VI+D+AHTPD L ++L ++ +
Sbjct: 306 ASCGIAYNVDLPSIKIGIESVVGIKGRFEIVPVDEDFSVIIDFAHTPDGLEKVLTTIDQF 365
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
A R + + G G DR KRP+M + +D+ I+TSDNP EDP +I+ D++ GV
Sbjct: 366 AEGRKVVIFGAGGNRDRTKRPIMGETVAKHADLCIVTSDNPRFEDPDEIIKDIIVGVEKA 425
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
+Y+ + R+ A+ A+ + D++++AGKGHETY I D
Sbjct: 426 KGKYIAITD------------------RKEAIEFALLNAKPKDIILLAGKGHETYTIIKD 467
Query: 364 KKEFFDDREESREALQYVDE 383
K FD+++ + L+ +D+
Sbjct: 468 KIISFDEKQIVLDILKNLDK 487
>gi|304383926|ref|ZP_07366383.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
16973]
gi|304335004|gb|EFM01277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
16973]
Length = 483
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 141/377 (37%), Positives = 205/377 (54%), Gaps = 35/377 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI + + + TTPD + + L+ +M +G E V ME SSH +A
Sbjct: 129 FGYKCGLLSTVCNYIE-EEAVPADHTTPDPIALNQLLHRMAESGCEYVFMECSSHAIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T + YRNAK F + P+ + N DD N
Sbjct: 188 RISGLHFSGGIFTNLTRDHLDYHKTFDNYRNAKKAFFDSL--PKSSFAITNADDKNGMYM 245
Query: 121 IAQGNPDVPVVTFAMENK---KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ N + T+++ N KA + FE E E+ +G+ N+
Sbjct: 246 VQ--NCKATIKTYSLRNMADFKAKILECHFEGMYLEIDG--------REVGVQFIGKFNV 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA + +G EDI+ + + +V GR E I ++ +VDYAHTPDAL+ +L
Sbjct: 296 SNLLAVYGTAMMLGKQPEDILLAMSTLKSVSGRLEPIRSQEGVTAVVDYAHTPDALANVL 355
Query: 238 DSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+++ E+ ++ITV G G D+GKRPLM + A +SD I+TSDNP +EDP I+DD
Sbjct: 356 NAIHEVLDGKGKVITVCGAGGNRDKGKRPLMAQEAAKQSDRVIITSDNPRDEDPQSIIDD 415
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
MLAG+ MQ+ K L + D R+ A+R AV M E GD++++AGKGH
Sbjct: 416 MLAGL--NMQQRKK--------------TLSIVD-RKEAIRTAVMMAERGDVILIAGKGH 458
Query: 356 ETYQIEGDKKEFFDDRE 372
ETYQ K FDD+E
Sbjct: 459 ETYQEIKGVKHHFDDKE 475
>gi|407960349|dbj|BAM53589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis BEST7613]
Length = 555
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 196/355 (55%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +A+ L G + VME SSH LA GR + F AVFTNLT+DH+DFHGT
Sbjct: 218 TTPFATDLQKQLAEALQAGNQYAVMEVSSHALAQGRVLQCGFACAVFTNLTQDHLDFHGT 277
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E Y AKA LF + R V+N DDP I + P V T+++ + AD +
Sbjct: 278 MENYFAAKALLFKESY--LQGRAVINQDDPYGQRLIDR-LPLDQVYTYSVNDSTADFYTK 334
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ + TP G S L+G+ N+ N+LAA+A G+ +G +V+ + +
Sbjct: 335 DLDYQPTGVKGTFVTPQGEFPFLSPLVGQFNLANVLAAIASGLHLGLDPAAMVKDLLDFP 394
Query: 206 AVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q V+VDYAHTPD+L L + R P R+I + GC G+ DR KR
Sbjct: 395 GVPGRMEQVQIRPDQDISVMVDYAHTPDSLENALKAARPFIPGRLICIFGCGGDRDRTKR 454
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM IA +D+ ++TSDNP EDP IL D++ G+ ++ ++
Sbjct: 455 PLMGNIAAQLADLAVVTSDNPRTEDPEQILADVVQGISLDIEPWI--------------- 499
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ D R A+ A+ + GD V++AGKGHE YQI G +K FDDRE++REAL
Sbjct: 500 ---IGD-RATAIHKAIREAKPGDGVLIAGKGHEDYQILGTEKIHFDDREQAREAL 550
>gi|16332016|ref|NP_442744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Synechocystis sp. PCC 6803]
gi|383323759|ref|YP_005384613.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Synechocystis sp. PCC 6803 substr. GT-I]
gi|383326928|ref|YP_005387782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383492812|ref|YP_005410489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384438080|ref|YP_005652805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Synechocystis sp. PCC 6803]
gi|451816168|ref|YP_007452620.1| UDP-MurNac-tripeptide synthetase [Synechocystis sp. PCC 6803]
gi|3122415|sp|Q55469.1|MURE_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|1001328|dbj|BAA10815.1| UDP-MurNac-tripeptide synthetase [Synechocystis sp. PCC 6803]
gi|339275113|dbj|BAK51600.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Synechocystis sp. PCC 6803]
gi|359273079|dbj|BAL30598.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Synechocystis sp. PCC 6803 substr. GT-I]
gi|359276249|dbj|BAL33767.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359279419|dbj|BAL36936.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Synechocystis sp. PCC 6803 substr. PCC-P]
gi|451782137|gb|AGF53106.1| UDP-MurNac-tripeptide synthetase [Synechocystis sp. PCC 6803]
Length = 505
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 196/355 (55%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +A+ L G + VME SSH LA GR + F AVFTNLT+DH+DFHGT
Sbjct: 168 TTPFATDLQKQLAEALQAGNQYAVMEVSSHALAQGRVLQCGFACAVFTNLTQDHLDFHGT 227
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E Y AKA LF + R V+N DDP I + P V T+++ + AD +
Sbjct: 228 MENYFAAKALLFKESY--LQGRAVINQDDPYGQRLIDR-LPLDQVYTYSVNDSTADFYTK 284
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ + TP G S L+G+ N+ N+LAA+A G+ +G +V+ + +
Sbjct: 285 DLDYQPTGVKGTFVTPQGEFPFLSPLVGQFNLANVLAAIASGLHLGLDPAAMVKDLLDFP 344
Query: 206 AVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q V+VDYAHTPD+L L + R P R+I + GC G+ DR KR
Sbjct: 345 GVPGRMEQVQIRPDQDISVMVDYAHTPDSLENALKAARPFIPGRLICIFGCGGDRDRTKR 404
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM IA +D+ ++TSDNP EDP IL D++ G+ ++ ++ G+
Sbjct: 405 PLMGNIAAQLADLAVVTSDNPRTEDPEQILADVVQGISLDIEPWI-IGD----------- 452
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
R A+ A+ + GD V++AGKGHE YQI G +K FDDRE++REAL
Sbjct: 453 -------RATAIHKAIREAKPGDGVLIAGKGHEDYQILGTEKIHFDDREQAREAL 500
>gi|118443333|ref|YP_878010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium novyi NT]
gi|118133789|gb|ABK60833.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Clostridium novyi NT]
Length = 483
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 211/384 (54%), Gaps = 52/384 (13%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++S +I G+ K+++ RTTP+++ + + KM E VME SSH L+L R
Sbjct: 129 GHSTGLIGTISNFI-GNEKIKAERTTPESLELHEMFKKMKDKNIEYCVMEVSSHSLSLDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
++F +FTNLT+DH+DFH T E Y AK +F + ++NIDD +
Sbjct: 188 VYGLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNAKNS-----IINIDDTYGERIL 242
Query: 122 AQGNPDVPVVTFAMENKKADV-------HPLKFELSLF----ETQVLVNTPHGILEISSG 170
+T++ E KKAD+ H E L ET + ++ P
Sbjct: 243 NDVPDSSNKITYSTE-KKADLFAKDIVNHARGAEFVLCYKDKETHINLSIP--------- 292
Query: 171 LLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE--LIDEEQAFGVIVDYAH 228
G +N+YN L + ++ G +ED+ +G+E V VPGRCE D + F VI+DYAH
Sbjct: 293 --GIYNVYNALCSAGACLSEGISMEDVKKGLESV-VVPGRCENATKDYDLGFDVIIDYAH 349
Query: 229 TPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
TPD L +L++ R+ R+I+V GC G+ D+ KRP+M KI +D SD+ I+TSDNP E+
Sbjct: 350 TPDGLENILETARDFTKGRLISVFGCGGDRDKTKRPIMGKIGSDMSDIAIITSDNPRTEE 409
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P I+ D++ G+ + D Y + N R+ A++ A+ + ++GD++
Sbjct: 410 PSQIIKDVVEGI-----------KKDNYIVVEN---------RKEAIKKAIEIAKQGDVI 449
Query: 349 VVAGKGHETYQIEGDKKEFFDDRE 372
VVAGKGHE YQI DK FD+RE
Sbjct: 450 VVAGKGHEDYQILKDKTIHFDERE 473
>gi|323142007|ref|ZP_08076858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Phascolarctobacterium succinatutens YIT 12067]
gi|322413539|gb|EFY04407.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Phascolarctobacterium succinatutens YIT 12067]
Length = 495
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 134/373 (35%), Positives = 208/373 (55%), Gaps = 22/373 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ I+ D ES TTPD V +Q + M G + VME SSH LAL R
Sbjct: 132 GYKVGLIGTINIMIN-DEITESHNTTPDVVDLQKTLYAMCCAGCDYCVMEVSSHALALKR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK--VVNIDDPNATS 119
+ +++D AV TN+T+DH+DFH T E YR+AK+ LF + D + K V N+DDP +S
Sbjct: 191 VAGIEYDCAVLTNITQDHLDFHKTMENYRDAKSLLFEHLTDGSKPNKNAVFNMDDP--SS 248
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
I + V+T+ E D++PL F + Q+L++TP G +++ + G N+YN
Sbjct: 249 AIIRERTKANVLTYG-EGHDNDIYPLSFTVEPKHMQLLLHTPVGEMDLELKITGEFNVYN 307
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
++ + +A + I ++ D VPGR +L++ Q + VIVDYAHTPD L +L +
Sbjct: 308 VMGVIGAMLAENIDKDIIGSVLDGFDGVPGRFQLVEAGQPYTVIVDYAHTPDGLENVLKT 367
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
R + ++ V GC G+ D KRPLM +A + +D ++TSDNP EDP I+D++
Sbjct: 368 ARSITRGKLWVVFGCGGDRDNKKRPLMGALALELADNIVVTSDNPRTEDPELIIDEIFTA 427
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ +P G + RR A+ A+A + D++++AGKGHE YQ
Sbjct: 428 L----------------QNVPAGKHVTRLSDRREAICYALAEAADNDVILIAGKGHENYQ 471
Query: 360 IEGDKKEFFDDRE 372
I D+ FDD+E
Sbjct: 472 ILKDRTIHFDDKE 484
>gi|225175502|ref|ZP_03729496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter
alkaliphilus AHT 1]
gi|225168831|gb|EEG77631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter
alkaliphilus AHT 1]
Length = 502
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 213/396 (53%), Gaps = 27/396 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG+L +V Y+I G+ + S TTP+A +Q ++ +M G ME SSH LA R
Sbjct: 129 GAATGLLGTVRYHIRGE-EFPSLATTPEASELQAILRRMKDEGVTYTTMEVSSHALAWHR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSR-----MVDPERHRKVVNIDDPN 116
DFD V TN+T DH+DFH T + Y +K+KLFS + R V+N DD +
Sbjct: 188 TIGCDFDTVVLTNITEDHLDFHQTFDHYLASKSKLFSWQGSFPLKGGRPRRAVINGDDKH 247
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
F Q +V + + + N V ++ + TP G EI+ + G +
Sbjct: 248 WQHFADQTPGEV--MLYGLSNH-CHVRANDVKVERDAVNFRLETPVGGTEITLKMTGLFS 304
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN LAA++VG+ G L I +E V VPGR EL+D Q F VIVDYAHTPD L +
Sbjct: 305 VYNSLAAISVGLLEGIDLARIKAVMESVAGVPGRFELVDAGQNFTVIVDYAHTPDGLENV 364
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L + RE AP R++TV GC G+ DR KRPLM + A SD I+TSDNP +EDP I+D++
Sbjct: 365 LQAAREFAPARVLTVFGCGGDRDRTKRPLMGEAAGKYSDYCIVTSDNPRSEDPEKIIDEI 424
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
L G+ + + E D R+ A+R A+ + ++ D+V++ GKGHE
Sbjct: 425 LPGLENQIDKSAYEIEPD----------------RKAAIRRAMELAQKDDVVIITGKGHE 468
Query: 357 TYQIEGDKKEFFDDREESREALQYVDELHQAGIDTS 392
T Q+ D FDDR+ + E ++ L Q G D +
Sbjct: 469 TTQVFRDHTITFDDRQIAGELIRR--RLKQDGDDIT 502
>gi|421873580|ref|ZP_16305192.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Brevibacillus laterosporus GI-9]
gi|372457367|emb|CCF14741.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Brevibacillus laterosporus GI-9]
Length = 492
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 136/379 (35%), Positives = 213/379 (56%), Gaps = 25/379 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I GD + TTPD + +Q+ +ML T+ +ME SSH L +GR
Sbjct: 129 KTGLIGTIHMRI-GDQIEKVKNTTPDMIDLQSSFRRMLDIHTDYAIMEVSSHALDMGRVH 187
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATS 119
D+ A+FTN+T+DH+D+H T + YR AK+ LF+++ + + ++N DD +
Sbjct: 188 GCDYHTAIFTNMTQDHLDYHKTFDNYRQAKSLLFAQLGNSYNQQSLKTAILNADD-EVSK 246
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ A P V+T+ ++ + ADV + ++ T V + G ++ L+G+ N+YN
Sbjct: 247 YFAHVTP-ARVLTYGID-QPADVRAVSIRVTSAGTSFTVQSFAGEATVNMKLMGKFNVYN 304
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
LAA+A + G PL I++ +EE+ V GR E + Q + VIVDY+HTPD+L L +
Sbjct: 305 ALAAIAATLVEGVPLAAIIKSLEEIPGVDGRFEPVSLGQDYAVIVDYSHTPDSLENALVT 364
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+E ++I V GC G DR KRP+M +IAT +D ++LTSDNP E+P IL DM+ G
Sbjct: 365 AKEFVTGQLICVAGCGGNRDRTKRPIMAQIATKYADYSVLTSDNPRFEEPEAILADMVGG 424
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ Q+ N RR A+ A++ + GD V++AGKGHETYQ
Sbjct: 425 IQNVDQKRFTTIVN-----------------RREAIFHAISQAKPGDCVLIAGKGHETYQ 467
Query: 360 IEGDKKEFFDDREESREAL 378
+ FDDRE ++EA+
Sbjct: 468 ESKGEIFPFDDREVAKEAI 486
>gi|224368379|ref|YP_002602542.1| protein MurE [Desulfobacterium autotrophicum HRM2]
gi|223691095|gb|ACN14378.1| MurE [Desulfobacterium autotrophicum HRM2]
Length = 514
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 150/384 (39%), Positives = 212/384 (55%), Gaps = 16/384 (4%)
Query: 6 GMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEV 65
G++ +V++ G +P TTP+++ +Q ++A+M VVME SSH + L R
Sbjct: 138 GVIGTVNFRYRG-KLFNNPVTTPESIDLQRILAQMKAAQVSHVVMEVSSHSIDLHRVRNC 196
Query: 66 DFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK-----VVNIDDPNATSF 120
FD VFTNLT+DH+D+H T Y K + F+R++ P + V+N+DD +
Sbjct: 197 RFDAGVFTNLTQDHLDYHRTMGRYFACKRRFFTRIL-PSGPKALTAMAVINLDDEKGQAL 255
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ VVT + +ADV L ++ T ++ SS L+G N+ NI
Sbjct: 256 --RDAAATKVVTTG-RDSRADVCALDLAETITGTTGILKIDGAPYPFSSALVGAFNVENI 312
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L+A A+G + IVRGIE VPGR E ++ + V VDYAHTPDAL +L+++
Sbjct: 313 LSAAGAAHAIGIDPQVIVRGIEGCKGVPGRLERVEPDNGRHVFVDYAHTPDALMSILETL 372
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
+ AP+RIITVVGC G+ DR KRP+M +IA SDV I+TSDNP +EDP I+ ++L G+
Sbjct: 373 KAQAPKRIITVVGCGGDRDRSKRPIMGQIAATLSDVAIITSDNPRSEDPHGIIQEILKGI 432
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ LK + L G+ F+ RR A+ AVA GD++V AGKGHETYQI
Sbjct: 433 DTALCPELKPDQ------LKTGNGFFVEPDRRKALELAVAASTPGDILVAAGKGHETYQI 486
Query: 361 EGDKKEFFDDREESREALQYVDEL 384
FDDRE AL V L
Sbjct: 487 LKGGTIHFDDREILSSALAGVQGL 510
>gi|304317207|ref|YP_003852352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778709|gb|ADL69268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 484
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 222/384 (57%), Gaps = 43/384 (11%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I GD + RTTP+++ +Q + M+ G + VVME SSH LAL R
Sbjct: 131 KVGLIGTIQNMI-GDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVMEVSSHSLALNRVD 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E DFDIAVFTNLT+DH+DFH T ++Y NAKAKLF RM + V+NIDD ++ I
Sbjct: 190 ECDFDIAVFTNLTQDHLDFHKTMDDYANAKAKLF-RMA---KTACVINIDDDYSSLIIE- 244
Query: 124 GNPDVPVVTFAMENK--------KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
N + VVT+ +++ K D+ K+ + + + + +I+ + G
Sbjct: 245 -NSNAKVVTYGIKDYAYIMAKDIKNDIKGAKYTVQIEDIKS---------DIALKIPGLF 294
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
++YN LAA++V +G PL+ + +++V + GR E++D + + V++DYAHTPD L
Sbjct: 295 SVYNSLAAISVAFILGIPLQSVKIALKDV-KIKGRFEILDIDAPYNVVIDYAHTPDGLEN 353
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L+ + E R I + GC G+ D+GKRP M ++A +D I+TSDNP +EDP+ I+ +
Sbjct: 354 LMKAFGEYDTGRKILLFGCGGDRDKGKRPKMGEVAGKYADFVIITSDNPRSEDPMQIISE 413
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ G+ T Y K EN R+ A++ A+++ ++ D+V++AGKGH
Sbjct: 414 IEMGIKNTKCPY-KIIEN-----------------RKEAIKYALSIAKDNDIVILAGKGH 455
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQ+ D+ FD+RE +E L
Sbjct: 456 ETYQVLKDRVIDFDEREIVKEILN 479
>gi|95930736|ref|ZP_01313469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
acetoxidans DSM 684]
gi|95133216|gb|EAT14882.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
acetoxidans DSM 684]
Length = 508
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 205/363 (56%), Gaps = 9/363 (2%)
Query: 17 GDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLT 76
GD+ +E+ TTP+++ +Q ++A+ G +A+V+E SSH L R + FD+AVFTNLT
Sbjct: 142 GDDAVEAEHTTPESLDLQRILAEFKSQGADALVIEVSSHALMQSRVVGLTFDVAVFTNLT 201
Query: 77 RDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAME 136
+H+D+H E Y AK +LF VVN DDP + + N + V
Sbjct: 202 PEHLDYHKNMESYFAAKTRLFKEPQIYGDFTAVVNTDDPYGAKLVRELNEPLSVGM---- 257
Query: 137 NKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLED 196
++ ADV E ++ T + TP G + + S L+G N+ N+L AV G+ + P+
Sbjct: 258 HRGADVRVCDVEQTMQGTVATLETPQGEITVRSPLVGPFNLENLLCAVGAGLVLDLPITT 317
Query: 197 IVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAG 256
I +G+ + VPGR E +D ++VDYAHT DAL++ L+++ L P+RIITV GC G
Sbjct: 318 IEQGLAAANRVPGRLEPVDNTLGALIVVDYAHTGDALAKALEAMAALKPQRIITVFGCGG 377
Query: 257 ESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYY 316
+ D KRP M ++A SD++I+TSDNP E+P I+DD+ G+ G+ D
Sbjct: 378 DRDTLKRPAMGEVAGRYSDLSIVTSDNPRTENPAKIIDDIKVGIERICPNLAVDGDPDSV 437
Query: 317 PPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESRE 376
G + + R A+ AV GD++++AGKGHE YQ+ G +K FDDRE+ R
Sbjct: 438 -----GKCYVVIEDRHEAIVYAVNQLRAGDLLLIAGKGHEDYQVIGTQKIHFDDREQVRL 492
Query: 377 ALQ 379
AL+
Sbjct: 493 ALE 495
>gi|108761901|ref|YP_633748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Myxococcus xanthus DK 1622]
gi|108465781|gb|ABF90966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Myxococcus xanthus DK 1622]
Length = 507
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/378 (36%), Positives = 210/378 (55%), Gaps = 12/378 (3%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ Y G +E TTPD + + ++ +M+ G E V+ME SSH LA R
Sbjct: 132 TGVIGTLGYKFAG-RTVECANTTPDPLELHRILREMVEAGVETVIMEVSSHALAQERVHG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
+ F A F+NL+RDH+D+H E+Y +K KLF+ + VVN DD A+ +
Sbjct: 191 LTFKAAGFSNLSRDHLDYHKDMEDYFQSKRKLFAENLSAT-GVAVVNGDDTYASRIYNEQ 249
Query: 125 NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAV 184
+ ++ SL + ++ TP G + + S LLG HN+ NIL AV
Sbjct: 250 RGQKRMAWKFSRQGSGEISAADVSFSLQGIKGVLKTPAGDIPLKSKLLGPHNLENILLAV 309
Query: 185 AVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG---VIVDYAHTPDALSRLLDSVR 241
+G+ G D+ GIE + V GR E ++ G V+VDYAHT DAL R +++ R
Sbjct: 310 GIGLGAGFARRDVQEGIERMMPVAGRMERVENYGPSGAPAVLVDYAHTDDALKRSIEAAR 369
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
LA R+I V GC G+ D+GKRPLM +A + +D+ ++TSDNP EDP +I+ + AG+
Sbjct: 370 SLAKGRVIAVFGCGGDRDKGKRPLMGAVAGEGADLAVVTSDNPRTEDPEEIISQVTAGIE 429
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDI-RRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ + G+ +G + +L D RR A+ A+++ D+V++AGKGHETYQ
Sbjct: 430 KSGLRRISAGK------AKSGEKGYLVDADRRAAIEQAISLASADDVVLIAGKGHETYQQ 483
Query: 361 EGDKKEFFDDREESREAL 378
G++K FDDR+ + +AL
Sbjct: 484 VGEEKLVFDDRQVAAKAL 501
>gi|167630123|ref|YP_001680622.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
[Heliobacterium modesticaldum Ice1]
gi|167592863|gb|ABZ84611.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
[Heliobacterium modesticaldum Ice1]
Length = 544
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 157/399 (39%), Positives = 215/399 (53%), Gaps = 44/399 (11%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ + + GD + TTP+++ +Q L+A+M G +AVVME SSH L R
Sbjct: 162 GRRVGLIGTNGNRL-GDKAWPAQHTTPESLDLQALLAEMADEGADAVVMEVSSHALDQLR 220
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD--------------PER-- 105
VDFD+A+FTNLT+DH+D+H T E YR+AK LF + PE
Sbjct: 221 VLGVDFDLALFTNLTQDHLDYHETLERYRDAKGMLFRALTGEMKGGKGASSPGSAPEATT 280
Query: 106 -----HRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNT 160
R ++N DDPNA FIA PV+T+ +E A + + ++ V
Sbjct: 281 LQGVPKRAIINADDPNAGFFIAASA--APVITYGIE-ADAMIKGRDWAVTPHGLTCDVLY 337
Query: 161 PHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAF 220
P G + ++ L GR N+ N LAA A G AVG E I + V V GR E ID Q F
Sbjct: 338 PGGEVRLNLQLTGRFNLSNALAAFAAGWAVGIDPEAIAAALGAVTGVAGRFERIDLGQPF 397
Query: 221 GVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILT 280
VIVDYAHTPD L +L + R LA R+ITV GC G+ DR KRP M + SDV I+T
Sbjct: 398 SVIVDYAHTPDGLENVLVTARALARGRVITVFGCGGDRDRTKRPKMGAVVARLSDVAIVT 457
Query: 281 SDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVA 340
SDNP EDP I++D+L P L + + + R A+ A++
Sbjct: 458 SDNPRTEDPRRIIEDIL-------------------PGLADAGDVHVEPDRSSAIALALS 498
Query: 341 MGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+ + GD+V++AGKGHE+YQI G + FDDR+ +RE L+
Sbjct: 499 LAQPGDLVMIAGKGHESYQIVGARVLPFDDRQIARERLR 537
>gi|83589689|ref|YP_429698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Moorella thermoacetica ATCC 39073]
gi|83572603|gb|ABC19155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Moorella thermoacetica ATCC 39073]
Length = 499
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 158/388 (40%), Positives = 211/388 (54%), Gaps = 27/388 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ + GD L + TTP+++ +Q+L+ +M+ AVVME SSH LAL R
Sbjct: 129 GRPAGLVGTIGNRL-GDRVLPAEHTTPESLDLQHLLYQMVSLQARAVVMEVSSHALALHR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHRKVVNIDDPNAT 118
+ +FD+AVFTNLT+DH+DFH E+Y N KA+LF + V V+N DDP +
Sbjct: 188 VAGTEFDVAVFTNLTQDHLDFHHNMEDYFNCKARLFQGLDQGVKAGPKYAVINGDDPYGS 247
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
A VPVVT+ V L + LV P G + L GR+NIY
Sbjct: 248 RLAAL--TPVPVVTYGC-TPGCQVRARDIHLETGGSTSLVTWPGGEAAMELRLTGRYNIY 304
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N LAA+AV + G + +R + VPGR E +D+ Q F V+VDYAHTPD L +L
Sbjct: 305 NALAALAVALQEGIDPQVAIRALGRFKGVPGRLERVDQGQPFTVVVDYAHTPDGLENVLR 364
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ R++ R++ V GC G+ DRGKRPLM + A SD +I+TSDNP +EDP I+ D+L
Sbjct: 365 AARQVTRGRLLVVFGCGGDRDRGKRPLMGRAAARLSDYSIITSDNPRSEDPEAIIADILP 424
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GV +P L D RR GDMVV+AGKGHETY
Sbjct: 425 GV----------------REVPGASYQVLVDRRRAIAAALALA-RPGDMVVIAGKGHETY 467
Query: 359 QIEGDKKEFFDDREESRE---ALQYVDE 383
QI DK FDDR+ +RE AL Y E
Sbjct: 468 QIVKDKTLPFDDRQVAREELAALGYTGE 495
>gi|113477570|ref|YP_723631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Trichodesmium erythraeum IMS101]
gi|110168618|gb|ABG53158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Trichodesmium erythraeum IMS101]
Length = 509
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 200/356 (56%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TT V +QN +A+ L G++ +ME SSH L R +++AVFTNLT+DH+D+H
Sbjct: 168 TTSFPVELQNQLAQALAAGSKYGIMEVSSHSLDQKRVWGCTYEVAVFTNLTQDHLDYHKD 227
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
++Y AKA+LFS D + R +VN DDP IA+ + V +++ + D+
Sbjct: 228 MDDYFEAKARLFSS--DYLKGRAIVNADDPYGQKLIARLESE-KVWSYSTSDTSTDLWAS 284
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
E + +++TP G + S L+G++N+ N+LAAV + +G L +V + +
Sbjct: 285 DLEYKPTGVKGMLHTPKGEMIFSLPLVGQYNLSNMLAAVGTTLHLGLDLSMVVTQLSDFP 344
Query: 206 AVPGRCELID--EEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E + E Q VIVDYAHTPD+L LL + R P R+I V GC G+ DR KR
Sbjct: 345 GVPGRMERVQVTEGQDVSVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKR 404
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA + SD+ +++SDNP EDP IL D+L G+ P
Sbjct: 405 PKMGKIAAELSDLAVVSSDNPRTEDPERILQDILEGIS------------------PEVK 446
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
L + D R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++R L+
Sbjct: 447 PLVISD-RAEAIRTAIMEAQSGDGVLIAGKGHEDYQILGTEKIHFDDREQARNTLR 501
>gi|406983586|gb|EKE04756.1| hypothetical protein ACD_20C00007G0017 [uncultured bacterium]
Length = 496
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/385 (35%), Positives = 216/385 (56%), Gaps = 25/385 (6%)
Query: 2 GLRTGMLSSVSY-YIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G+ G++ ++ + D+ + + TTP + + + ML +G + VVME SSH L
Sbjct: 129 GINCGLIGTLGQRFSSKDDYICTKHTTPQSPELHESLKNMLDSGIKHVVMEVSSHALEQH 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK--VVNIDDPNAT 118
R FD A TNLT+DH+D+H T + Y AK KLF+ + + ++ K V+N DD ++
Sbjct: 189 RVGGCLFDAAALTNLTQDHLDYHITMDNYFKAKNKLFTSLKNDKKDNKYAVINKDDGSSE 248
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
FI V ++T+ ++N KAD+ E S++ ++ TP G ++ + GR ++Y
Sbjct: 249 RFIQTIPEGVRILTYGLQN-KADIMAKNIEYSVYGSKFDCITPVGNKTVNLQMAGRFSVY 307
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N LAA+AVGI + ++ +E +V GR E++ E +IVDYAHTPD LS +L+
Sbjct: 308 NALAALAVGIGENIDFDICIKALESTKSVAGRFEVVIREPL--IIVDYAHTPDGLSNVLN 365
Query: 239 SVRELAP--RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ R++ P +++ VVGC G+ D KRP M IA SD+ ++TSDNP +EDP I+ DM
Sbjct: 366 AARQVVPPNGKLVCVVGCGGDRDATKRPKMANIAEAISDLVVITSDNPRSEDPQQIITDM 425
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
L G+ N ++ + RR A+ AV + D++V+AGKGHE
Sbjct: 426 LTGIKSL-----------------NSDKIQVEIDRRSAIELAVKNANKNDVIVLAGKGHE 468
Query: 357 TYQIEGDKKEFFDDREESREALQYV 381
YQI ++ FDDREE+R+A + V
Sbjct: 469 DYQILKNETIHFDDREEARKAFEKV 493
>gi|423346171|ref|ZP_17323859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides merdae CL03T12C32]
gi|409220969|gb|EKN13922.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides merdae CL03T12C32]
Length = 490
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 208/381 (54%), Gaps = 29/381 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI G+ + + TTPD V + NLMA+M+ G E ME SSH +
Sbjct: 136 MGHKVGLLSTVCNYIDGE-AIPTDHTTPDPVTLHNLMARMVEAGCEYAFMEVSSHSIDQK 194
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F+ +FTNLTRDH+D+H T E Y AK K F + P + N DD
Sbjct: 195 RISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PASAFALTNADDK--AGL 250
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +T+++ AD E T++LVN E+ + +GR N YN+
Sbjct: 251 VMLQNTAARKLTYSLRT-LADFKGKILESHFEGTEMLVNGR----EVMTRFVGRFNAYNL 305
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +++G E+++ + ++ +V GR + I + IVDYAHTPDAL+ +L+S+
Sbjct: 306 LAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTIQSPLGYTAIVDYAHTPDALTNVLNSI 365
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ R+ITVVGC G D+GKRP+M K A SD ILTSDNP E+P +I+ DM+A
Sbjct: 366 HEVLDGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSDQLILTSDNPRFEEPDEIIKDMVA 425
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ E H L + D R A++ A + +GD+++VAGKGHE Y
Sbjct: 426 GLNAADME----------------HTLCITD-RAQAIKTATMLARKGDVILVAGKGHEDY 468
Query: 359 QIEGDKKEFFDDREESREALQ 379
Q K FDDRE+ +E +
Sbjct: 469 QEVKGVKHHFDDREQLKEIFK 489
>gi|196230913|ref|ZP_03129774.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus
Ellin428]
gi|196225254|gb|EDY19763.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus
Ellin428]
Length = 1084
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 210/387 (54%), Gaps = 40/387 (10%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
LR G+L +V Y I GD L + RTTP+++ V ++ +M G +A ME SSH L R
Sbjct: 722 LRCGLLGTVRYEI-GDRVLPASRTTPESLDVHEMLWQMRSAGCKACAMEVSSHALVQARV 780
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH--RKVVNIDDPNATSF 120
+V+FD A+FTNLT+DH+D+H T E Y AKA++FS + ++ + ++N+DD
Sbjct: 781 RDVEFDAAIFTNLTQDHLDYHKTMEAYFEAKARMFSELAAQKKKQGKAIINLDDRYGAQL 840
Query: 121 IAQGNPDVPVVTFAM--------ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLL 172
+ + +P+ T+ + N + D H ++L LV P L+
Sbjct: 841 VTRFGKAIPITTYGLGVHADFRASNVRIDFHGTSYQLDAGGRSYLVRLP---------LI 891
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
G+ N+YN LAAVA A+G + + V + AVPGR E + ++ F V VDYAHT DA
Sbjct: 892 GQFNVYNSLAAVAAANAMGIEVRNCVLALANATAVPGRLEAVPAQRQFRVFVDYAHTDDA 951
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L ++ + REL P R+I V GC G D+ KRP M + +D I+TSDNP E+PL I
Sbjct: 952 LLNVIKTCRELNPARLIVVFGCGGNRDKTKRPRMGAVVDQHADHAIVTSDNPRKEEPLAI 1011
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++D+ P + G+ + D RR A+ AVAM + D++++AG
Sbjct: 1012 IEDI-------------------KPGMRRGNYEVIVD-RREAIFKAVAMAQPRDIILIAG 1051
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHE YQ D+ FDD +R+AL+
Sbjct: 1052 KGHENYQEFADRTMPFDDVAVARQALE 1078
>gi|339009179|ref|ZP_08641751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Brevibacillus laterosporus LMG 15441]
gi|338773657|gb|EGP33188.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Brevibacillus laterosporus LMG 15441]
Length = 492
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/378 (35%), Positives = 211/378 (55%), Gaps = 23/378 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I GD + TTPD + +Q+ +ML T+ +ME SSH L +GR
Sbjct: 129 KTGLIGTIHMRI-GDQIEKVKNTTPDMIDLQSSFRRMLDIHTDYAIMEVSSHALDMGRVH 187
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHRKVVNIDDPNATSF 120
D+ A+FTN+T+DH+D+H T + YR AK+ LF+++ D + + + D + +
Sbjct: 188 GCDYHTAIFTNMTQDHLDYHKTFDNYRQAKSLLFAQLGNSYDQQSLKTAILNADDEVSKY 247
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
A P V+T+ ++ + ADV + ++ T V + G+ ++ L+G+ N+YN
Sbjct: 248 FAHVTP-ARVLTYGID-QPADVRAVSIRVTSAGTSFTVQSFAGVATVNMKLMGKFNVYNA 305
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA+A + G PL I++ +E + V GR E + Q + VIVDY+HTPD+L L +
Sbjct: 306 LAAIAATLVEGVPLAAIIKSLEGIPGVDGRFEPVSLGQDYAVIVDYSHTPDSLENALVTA 365
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
+E ++I V GC G DR KRP+M +IAT +D ++LTSDNP E+P IL DM+ G+
Sbjct: 366 KEFVTGQLICVAGCGGNRDRTKRPIMAQIATKYADYSVLTSDNPRFEEPEAILADMVGGI 425
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
Q+ N RR A+ A++ + GD V++AGKGHETYQ
Sbjct: 426 QNVDQKRFTTIVN-----------------RREAIFHAISQAKPGDCVLIAGKGHETYQE 468
Query: 361 EGDKKEFFDDREESREAL 378
+ FDDRE ++EA+
Sbjct: 469 SKGEIFPFDDREVAKEAI 486
>gi|451819444|ref|YP_007455645.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451785423|gb|AGF56391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 487
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/394 (36%), Positives = 214/394 (54%), Gaps = 53/394 (13%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ +++ YI G K+ + RTTP+++ +Q L + M++ G E VME SSH L L R
Sbjct: 132 KVGLIGTIANYI-GSEKIHTERTTPESLELQELFSDMVNRGVEYCVMEVSSHSLELDRVY 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA- 122
V F++ +FTNLTRDH+DFH T E Y AK KLF R K+VNIDD I
Sbjct: 191 GVKFEVGIFTNLTRDHLDFHKTFENYYKAKFKLFERA-----GIKIVNIDDNYGRQVIED 245
Query: 123 -QGNPDVPVVTFAMENKKADVHPLKFELSLFE----------TQVLVNTPHGILEISSGL 171
+ V TF++ N +D E+ E Q ++N P
Sbjct: 246 LENLKGKEVYTFSV-NSNSDFKVFDEEMGSREIKFKLKLKKEEQFILNIP---------- 294
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHT 229
G +NIYN L A+ + P I GIE V V GRCE + +E + +I+DYAHT
Sbjct: 295 -GEYNIYNALGAIIACYKLDIPEVAIKNGIESV-VVLGRCERVAKEYNLPYEIIIDYAHT 352
Query: 230 PDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDP 289
PD L +L + + ++I+V GC G+ D+ KRP M KI+TD +D++I+TSDNP +E+P
Sbjct: 353 PDGLENILKTAKAFTKGKLISVFGCGGDRDKVKRPQMGKISTDIADISIITSDNPRSEEP 412
Query: 290 LDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVV 349
+I+ D+ AGV + Y+ G R+ A++ A+ + ++ D++V
Sbjct: 413 AEIIKDIKAGV--NKENYIIIGN------------------RKEAIKKAITIADKDDVIV 452
Query: 350 VAGKGHETYQIEGDKKEFFDDREESREALQYVDE 383
+AGKGHETYQI D+ FD+RE +E L V++
Sbjct: 453 IAGKGHETYQILKDETIHFDEREVVKEILDSVNK 486
>gi|359686935|ref|ZP_09256936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Leptospira licerasiae serovar Varillal str. MMD0835]
gi|418750337|ref|ZP_13306623.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira licerasiae str. MMD4847]
gi|418756443|ref|ZP_13312631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|384116114|gb|EIE02371.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|404272940|gb|EJZ40260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira licerasiae str. MMD4847]
Length = 496
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 133/359 (37%), Positives = 201/359 (55%), Gaps = 25/359 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTPD +Q+++ +M G E V MEASSHGL LGR + V F + VF+NLT+DH+DFH
Sbjct: 155 TTPDPSSLQSILKEMYDAGVEYVFMEASSHGLKLGRTNGVHFKVGVFSNLTQDHLDFHPN 214
Query: 86 EEEYRNAKAKLFSRM-VDPERHRKVVNIDDPNATSF---IAQGNPDVPVVTFAMENKKAD 141
E+YRN+KA LFS + ++PE V++ D P F + +PD+ + + + + +
Sbjct: 215 MEDYRNSKALLFSSLALNPETF-GVIDSDAPGGREFKSVVEANSPDLKIFSLGRSSGEFE 273
Query: 142 VHPLKFELSLFETQV-LVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200
+H F L Q+ L + G E+++ LLG N+ N A + +G + I+
Sbjct: 274 IHSEAFSLEKTSYQIRLSDDWGGDTEVNTNLLGGFNVRNTALAFVTALGLGWEKKSILSA 333
Query: 201 IEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259
+E + +PGR ++ ++++ +VDYAHTPDAL +L S+R+ P+ +I + GC G+ D
Sbjct: 334 LESIPQIPGRFQIYYSKDRSRMAVVDYAHTPDALENILRSIRKSKPKELIALFGCGGDRD 393
Query: 260 RGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPL 319
+ KRP M KIA + +D ILTSDNP E+P ILDD+ AG ++ +
Sbjct: 394 KTKRPKMAKIAQELADKVILTSDNPRTENPESILDDIQAGFSAGYSPMIREAD------- 446
Query: 320 PNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
R A+ ++ +EG ++VAGKGHE YQI G K FDD EE R+A
Sbjct: 447 -----------RAKAILYGISHLKEGGCLLVAGKGHEDYQIIGKDKRHFDDGEEIRKAF 494
>gi|398346389|ref|ZP_10531092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Leptospira broomii str. 5399]
Length = 501
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 213/390 (54%), Gaps = 30/390 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G G++ +V G K ++ TTPDA +Q ++ +ML G E V MEASSHGL LG
Sbjct: 131 VGASCGVIGTVGARFLGKKK-DTGYTTPDACSLQEILKEMLDAGIEYVFMEASSHGLKLG 189
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS- 119
R V F VFTNLT+DH+DFH + E+Y +K+ LF M + V+++ P+
Sbjct: 190 RTDGVRFSAGVFTNLTQDHLDFHPSMEDYLWSKSLLFQSMKAEPKAFGVLDLGSPSGLEM 249
Query: 120 --FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPH---GILEISSGLLGR 174
I P++ + FA+E+ ++ K E SL T+ P G I + LLG
Sbjct: 250 YDLIRNQCPELKL--FAIEDGSGELKISKEEFSLQGTEYDFEIPSVWGGKARIHTNLLGG 307
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDAL 233
NI N A+ + +G P +++ + + +PGR +L +++ +VDYAHTPDAL
Sbjct: 308 FNIRNTALALTTALGLGWPRNSLLQALRSIPQIPGRFQLYYSPDRSRMAVVDYAHTPDAL 367
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L SVRE P+ +I + GC G+ DR KRP M +IA +D ILTSDNP E+P IL
Sbjct: 368 ENILRSVRESKPKELIVLFGCGGDRDRTKRPQMARIAEKLADKVILTSDNPRTENPEAIL 427
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI-RRVAVRCAVAMGEEGDMVVVAG 352
D++ +G + P G FL ++ R VA+R V++ +EG ++VAG
Sbjct: 428 DEIQSG----------------FSP---GFTPFLREVDRAVAIRRGVSVLDEGGCLLVAG 468
Query: 353 KGHETYQIEGDKKEFFDDREESREALQYVD 382
KGHE YQI G +K FDD EE + A + +
Sbjct: 469 KGHEDYQIIGKEKRHFDDGEEIQNAWLFTE 498
>gi|328957123|ref|YP_004374509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Carnobacterium sp. 17-4]
gi|328673447|gb|AEB29493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Carnobacterium sp. 17-4]
Length = 492
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/379 (36%), Positives = 215/379 (56%), Gaps = 28/379 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I G E+ TTPD++ +Q + +M NG + ME SSH L GR
Sbjct: 131 KTGVIGTMYRRI-GAEVYETKNTTPDSLTLQKTLREMQENGVQTCSMEVSSHSLVQGRVW 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATS 119
DFDIA+FTNL++DH+++H T E+Y AK+ LFS++ + + K ++N DDP S
Sbjct: 190 GTDFDIAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQDKPKFAILNFDDPVGRS 249
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
F + V ++ ++ + AD ++ T+ +N + E+ L+G+ N+ N
Sbjct: 250 F--EEKTAASVFSYGID-QSADFKATDLRITNKGTRFNLNFEDQVYEVQLQLVGKFNVSN 306
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
LAA+A A G L +++ + ++ V GR E++ E F VIVDYAHTPD L +L++
Sbjct: 307 ALAAIAGAYAAGLELPSVIQSLSQISGVRGRFEIVKGEYDFAVIVDYAHTPDGLLNVLNA 366
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
V E+ + VVGC G+ DR KRP+M +IA SD I TSDNP EDP IL++++AG
Sbjct: 367 VNEIKTGNVFCVVGCGGDRDRTKRPIMAEIAQKNSDTVIFTSDNPRTEDPNAILNEVVAG 426
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ E + Y +P+ RR A++ A+ D+V++AGKGHE YQ
Sbjct: 427 L-----------EEESYQLIPD---------RREAIQSAIKQAAPNDIVLIAGKGHENYQ 466
Query: 360 IEGDKKEFFDDREESREAL 378
I G +K FDD EE+ +A+
Sbjct: 467 IIGTEKIHFDDVEEAEKAI 485
>gi|339637330|emb|CCC16233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Lactobacillus pentosus IG1]
Length = 493
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 149/387 (38%), Positives = 210/387 (54%), Gaps = 45/387 (11%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ I D KL + TTPD++ Q +A M G E V ME SS L LGR
Sbjct: 132 TGLIGTMYRKIK-DEKLPTANTTPDSITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPNATS 119
+D+DIAVFTNLT+DH+DFH T +Y AKA LF+++ D V+N DDP
Sbjct: 191 IDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYNADGTNKVAVLNTDDPVGRE 250
Query: 120 FIAQGNPDVPVVTFAM--------ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGL 171
F + V+TF + +N + H +F+LS+F + ++ L
Sbjct: 251 F--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFG---------HVTHVTMQL 299
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD 231
+G+ N+YN+LAA A A G P + I++ +E+V V GR + + VIVDY+HTPD
Sbjct: 300 IGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPD 359
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
L L+++++ A + I VVGC G+ D+ KRP M KIA + S I TSDNP EDP
Sbjct: 360 GLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTM 419
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL+DM+AGV P+ + D R A+ A+ + GD+V++A
Sbjct: 420 ILNDMVAGV-------------------PDANVPVYED-RHEAIAKAIEAAQPGDVVLIA 459
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI G K FDD EE+ +AL
Sbjct: 460 GKGHEDYQIIGRTKHHFDDSEEAAKAL 486
>gi|427406110|ref|ZP_18896315.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas sp. F0473]
gi|425708951|gb|EKU71990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas sp. F0473]
Length = 496
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 213/385 (55%), Gaps = 27/385 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ + D+ + TTPD V++Q ++A+M G + VVME SSH L GR
Sbjct: 132 GKRVGLIGTIRVMME-DDVFPTENTTPDVVVMQQMLAEMRTRGMDTVVMEVSSHALDQGR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR---KVVNIDDPNAT 118
+ ++FD AVFTNLT+DH+D+H T E Y AKA+LF + P + V+N DD A
Sbjct: 191 VAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKKGKTAVINADD--AA 248
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILE--ISSGLLGRHN 176
+ + + PV+++ +E K+A + ++ L + + ++ HG E +S + G+ N
Sbjct: 249 GAVMRAHTTCPVLSYGVE-KEASL--TARDIRLAQDHMTLSLVHGGEECPLSLHITGKFN 305
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN+LAA A G + I +E VPGR EL+ Q F VIVDYAHTPD + +
Sbjct: 306 VYNVLAAAGAAHAEGVGYDVIRTALEAFTGVPGRFELVRAGQDFSVIVDYAHTPDGMENV 365
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L + R + RII V GC G+ DR KRP+M +I + +D +TSDNP EDP ILD++
Sbjct: 366 LRTARAVTAGRIIAVFGCGGDRDRTKRPVMGRIGAEMADAVFITSDNPRTEDPAAILDEV 425
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG L Y L + RR A+ AV GD VV+ GKGHE
Sbjct: 426 EAGA-------LPVIGAKPYKKLVD---------RRTAIFDAVRAAHTGDSVVILGKGHE 469
Query: 357 TYQIEGDKKEFFDDREESREALQYV 381
TYQI + FDDRE + EA++ V
Sbjct: 470 TYQILKEGTVHFDDRETAEEAIRSV 494
>gi|375085839|ref|ZP_09732461.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megamonas funiformis YIT
11815]
gi|374566324|gb|EHR37569.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megamonas funiformis YIT
11815]
Length = 496
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 142/387 (36%), Positives = 214/387 (55%), Gaps = 33/387 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I D ++ TTPD + +Q ++ KM + VVME SSH L + R
Sbjct: 129 GYKVGVIGTIKIMIE-DEEMPIHNTTPDVIDLQEILDKMYKQNIDYVVMEVSSHALDMNR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRKVVNIDDPNA 117
+ ++D A+FTNLT+DH+D+H T E Y AKAKLF + P V+N+DD
Sbjct: 188 IAGCEYDTAMFTNLTQDHLDYHKTMENYALAKAKLFDSLSAPNLVKSNKNAVINLDDELG 247
Query: 118 TSFIAQGNPDVPVVTFAMENK---KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGR 174
+ + + + ++T+ ++N KA+ +K + F+ + + H L+++ G
Sbjct: 248 SKTMIE-HTKCNLITYGIKNDAVLKAENVEIKASGASFDVKYKDDCVHFDLKVT----GM 302
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+YNIL + V +A + I +E +AV GR EL+ + Q F VIVDYAHTPD L
Sbjct: 303 FNVYNILGVIGVALAEKISFDLIKETLEAFEAVAGRFELVRQGQDFSVIVDYAHTPDGLE 362
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L + RE+A +R+I V GC G+ DR KRP+M +IA +DV I TSDNP EDP IL
Sbjct: 363 NVLKTAREIAKKRLIVVFGCGGDRDRTKRPIMGRIAAQLADVVIATSDNPRTEDPEFILS 422
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVVAG 352
++ AGV LP H F I RR A+ A+ + ++ D+V++AG
Sbjct: 423 EVEAGV------------------LPALHGNFHEKITDRRTAIFRAIELAQKDDIVLIAG 464
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHE YQI FDD+E + EA++
Sbjct: 465 KGHENYQILKTGTIHFDDKEVAIEAIR 491
>gi|81300293|ref|YP_400501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Synechococcus elongatus PCC 7942]
gi|123556803|sp|Q31N55.1|MURE_SYNE7 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|81169174|gb|ABB57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Synechococcus elongatus PCC 7942]
Length = 497
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/354 (39%), Positives = 193/354 (54%), Gaps = 24/354 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +A + G +A VME SSH L GR + FD+AVFTNLT+DH+D+HGT
Sbjct: 161 TTPFATDLQAQLATAVDAGCQAAVMEVSSHALDQGRVNGCGFDVAVFTNLTQDHLDYHGT 220
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E Y AKA+LF+ R + V+N DD I P +T+++ AD
Sbjct: 221 MEAYFAAKARLFAPPY--LRGKAVINADDAYGQRLITM-TPPGQCLTYSVVGT-ADFCTT 276
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ + + TP G S L+G+ N+ N+L A+A G +G P+E ++ + +
Sbjct: 277 DLQYGPTGVEGTIKTPDGAFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFV 336
Query: 206 AVPGRCE-LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRP 264
VPGR E ++ ++ VIVDYAHTPD+L LL + R +I V GC G+ DR KRP
Sbjct: 337 GVPGRMERVVGQDSDPTVIVDYAHTPDSLENLLKAARPFIQGELICVFGCGGDRDRTKRP 396
Query: 265 LMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHR 324
LM +IA +D I+TSDNP EDP IL D++AG+ P
Sbjct: 397 LMGEIAARLADRVIITSDNPRTEDPRQILADIVAGI-------------------PAASP 437
Query: 325 LFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + R A+R A+ + GD V++AGKGHE YQI G K FDDRE++R AL
Sbjct: 438 VVVEADRAAAIRQAILSAQPGDGVLLAGKGHEDYQILGTTKIHFDDREQARLAL 491
>gi|29653481|ref|NP_819173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Coxiella burnetii RSA 493]
gi|153207139|ref|ZP_01945918.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Coxiella burnetii 'MSU Goat Q177']
gi|154706527|ref|YP_001425293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Coxiella burnetii Dugway 5J108-111]
gi|161830895|ref|YP_001596092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Coxiella burnetii RSA 331]
gi|165918371|ref|ZP_02218457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Coxiella burnetii Q321]
gi|212213347|ref|YP_002304283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Coxiella burnetii CbuG_Q212]
gi|212219395|ref|YP_002306182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Coxiella burnetii CbuK_Q154]
gi|46577002|sp|Q83F28.1|MURE_COXBU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|29540743|gb|AAO89687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Coxiella burnetii RSA 493]
gi|120576800|gb|EAX33424.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Coxiella burnetii 'MSU Goat Q177']
gi|154355813|gb|ABS77275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Coxiella burnetii Dugway 5J108-111]
gi|161762762|gb|ABX78404.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Coxiella burnetii RSA 331]
gi|165917877|gb|EDR36481.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Coxiella burnetii Q321]
gi|212011757|gb|ACJ19138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Coxiella burnetii CbuG_Q212]
gi|212013657|gb|ACJ21037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Coxiella burnetii CbuK_Q154]
Length = 489
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 142/386 (36%), Positives = 202/386 (52%), Gaps = 37/386 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+R G++ ++ Y G ++ TTP+ + +Q A+M G +A+ ME SSH L R
Sbjct: 132 GIRCGVIGTLGYGFLGSLH-KTSHTTPEPIQLQQAFAEMRKQGAKAIAMEVSSHALHQRR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V FDIAVFT L+RDH+D+HG E Y AK LF + P H VVN DD I
Sbjct: 191 VEGVQFDIAVFTQLSRDHLDYHGDMENYARAKELLFQQ---PGLHTGVVNCDDALGKRII 247
Query: 122 AQGNPDVPVVTFAMENKKAD---------VHPLKFELSLFETQVLVNTPHGILEISSGLL 172
A + +V ++ K D + PL S V V TP G ++ L
Sbjct: 248 AHYRHQLTLVGYSANGVKDDRVSSVIASAIQPLAQGFS-----VEVQTPWGEGTFTTPLF 302
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
GR NI N+LA ++V P + + + ++ VPGR +++D ++ +IVDYAHTPDA
Sbjct: 303 GRFNISNLLAVLSVLCLCEIPFDKALLELSQLRNVPGRMQVVDSQRQPQIIVDYAHTPDA 362
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L + L ++RE R+I V GC G+ DRGKRP M +A +D ILT+DNP E PL I
Sbjct: 363 LEKALTALREHCQGRLICVFGCGGDRDRGKRPQMAAVAEQHADQIILTNDNPRTESPLTI 422
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ D+ AG N + + + R A+R AV M D+V++AG
Sbjct: 423 IQDIQAG-------------------FKNKNAVLVKLDRAEAIRYAVQMAAVNDIVLIAG 463
Query: 353 KGHETYQIEGDKKEFFDDREESREAL 378
KGHET Q D+ F+D EE+++AL
Sbjct: 464 KGHETTQTIADQVLPFNDVEEAKKAL 489
>gi|440781903|ref|ZP_20960131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium pasteurianum DSM 525]
gi|440220621|gb|ELP59828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium pasteurianum DSM 525]
Length = 482
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 136/391 (34%), Positives = 212/391 (54%), Gaps = 53/391 (13%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ YI GD K+ + RTTP+++ + L +M+ +G E VME SSH L L R
Sbjct: 129 GHKVGLIGTIANYI-GDKKILAHRTTPESLELHKLFKEMVDSGAEYCVMEVSSHSLYLNR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDD------- 114
++F+ +FTNLT+DH+DFH T E Y NAK LF D ++N+DD
Sbjct: 188 VYGIEFNEGIFTNLTQDHLDFHKTFENYYNAKLILFKNSKDA-----IINMDDDYGKRVY 242
Query: 115 ----PNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSG 170
N ++ + + DV M ++ D F+++ V VN
Sbjct: 243 DDLSCNKITYGFKKHEDVEAKDIKMHSRGID-----FKINYKNESVFVNL---------N 288
Query: 171 LLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI--DEEQAFGVIVDYAH 228
+ GR+NI N L + A + G L+ I G+E + AVPGRCE + + + F +IVDYAH
Sbjct: 289 IPGRYNISNALGSAAACLLEGITLKQIKTGLEALKAVPGRCEAVGTNFDLGFDIIVDYAH 348
Query: 229 TPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
TPD L +L + RE R+I+V GC G+ D+ KRP+M I + SD+ I+TSDNP E+
Sbjct: 349 TPDGLVNILKTAREFTKGRLISVFGCGGDRDKTKRPIMGGIGSQLSDIAIITSDNPRTEE 408
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P+ I+++++ G+ D Y + N RR A++ A++M + D++
Sbjct: 409 PISIINEIVKGI-----------SKDNYITIEN---------RREAIKKAISMANKDDVI 448
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREALQ 379
V+AGKGHE YQ+ + FD+RE E ++
Sbjct: 449 VIAGKGHEDYQVLKEGTIHFDEREVVDEIIK 479
>gi|220927932|ref|YP_002504841.1| UDP-N-acetylmuramyl tripeptide synthetase [Clostridium
cellulolyticum H10]
gi|219998260|gb|ACL74861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
cellulolyticum H10]
Length = 486
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 140/380 (36%), Positives = 213/380 (56%), Gaps = 31/380 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ +++ I G L + RTTP++ +Q+L + M+ ++ VME SS GL L R
Sbjct: 129 GRNMGLVGTLANLI-GSEVLYTSRTTPESYDLQSLFSDMVEKKVDSTVMEVSSQGLELHR 187
Query: 62 CSEVDFDIAVFTNLTRDHM--DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
++ DFDI VFTN +RDH+ H T EEY NAKAKLF + V+NID +
Sbjct: 188 VAKCDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLFKMC-----RKAVINIDSEHGRK 242
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
V T+ + +K AD+ T +N+P G ++I + L G NIYN
Sbjct: 243 MAELAK--CKVFTYGLSDK-ADIWASDIVKKTGHTYFTLNSPWGSIDIETDLQGEFNIYN 299
Query: 180 ILAAVAVGIAV-GAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
LAA+ + G LE + G+ +V VPGR E + + V++DYAHTPD+L ++L
Sbjct: 300 ALAAIGSCCLIPGITLEHVRLGLTKV-TVPGRMESVKTGGNYSVLIDYAHTPDSLEQVLK 358
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+V+E A R++++ GC G+ D+GKRP M +I+ + +D TI+TSDNP E+P I++D+ A
Sbjct: 359 TVKEFAHGRVVSLFGCGGDRDKGKRPAMGEISGNIADFTIITSDNPRTENPEQIIEDIEA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ T +Y+K + RR A++ A+ +GD++++AGKGHETY
Sbjct: 419 GIKNTNGKYIKITD------------------RRQAIKFALENAVDGDIIILAGKGHETY 460
Query: 359 QIEGDKKEFFDDREESREAL 378
Q +K FD+RE E L
Sbjct: 461 QQFAEKTIHFDEREVVNELL 480
>gi|253682637|ref|ZP_04863434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium botulinum D str. 1873]
gi|253562349|gb|EES91801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium botulinum D str. 1873]
Length = 483
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 134/382 (35%), Positives = 213/382 (55%), Gaps = 48/382 (12%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ +I G+ K+++ RTTP+++ +Q + KM E +ME SSH L+L R
Sbjct: 129 GCNTGLIGTIANFI-GEKKIKAERTTPESLELQEMFKKMNDKNIEYCIMEVSSHSLSLDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ F +FTNLT+DH+DFH T E Y AK +F + ++NIDD +
Sbjct: 188 VYGLKFSQGIFTNLTQDHLDFHKTFENYYKAKLSMFHNAKNS-----IINIDDFYGDRML 242
Query: 122 AQGNPDVPVVTFAMENKKADVHP---------LKFELSLFETQVLVNTPHGILEISSGLL 172
+T++ E ++AD+ +F+L ET + +N +
Sbjct: 243 KDIPKTSTKITYSTE-RQADLFAENIVNHSRGAEFDLIYKETMIHINLS---------IP 292
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQ--AFGVIVDYAHTP 230
G +N+YN L + A + G +E + G+E V VPGRCE + ++ F VIVDYAHTP
Sbjct: 293 GIYNVYNALCSAAACLEEGISIEKVKEGLENV-VVPGRCENVTKKYNLGFDVIVDYAHTP 351
Query: 231 DALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPL 290
D L +L++ ++ R+I+V GC G+ D+ KRP+M KI ++ SD+ I+TSDNP E+P+
Sbjct: 352 DGLENILNTAKDFTKGRLISVFGCGGDRDKTKRPIMGKIGSNLSDIAIITSDNPRTEEPM 411
Query: 291 DILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVV 350
I+DD+++G+ + D Y + N R+ A++ A+ M ++ D++VV
Sbjct: 412 SIIDDVVSGI-----------DKDNYIVVEN---------RKEAIKQAMKMAKKDDVIVV 451
Query: 351 AGKGHETYQIEGDKKEFFDDRE 372
AGKGHE YQI DK FD+RE
Sbjct: 452 AGKGHEDYQILKDKVIHFDERE 473
>gi|187735159|ref|YP_001877271.1| UDP-N-acetylmuramyl tripeptide synthetase [Akkermansia muciniphila
ATCC BAA-835]
gi|187425211|gb|ACD04490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila
ATCC BAA-835]
Length = 501
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/388 (35%), Positives = 201/388 (51%), Gaps = 42/388 (10%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
LR G++ +++Y +G+ S TTP + +++L+ +M NG V ME SSH L R
Sbjct: 133 LRAGLIGTIAYD-NGEEITPSTHTTPGPLELEHLLKEMYENGCRGVSMEVSSHALDQERV 191
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNAT 118
+ ++F++ +FTNLT+DH+D+H T E Y AKAKLF +M + R+ V+NIDD
Sbjct: 192 AGINFNVGIFTNLTQDHLDYHHTMENYFQAKAKLFEQMAQDTKSRRKPVAVINIDDAYGR 251
Query: 119 SFIAQGNPDVPVVT--------FAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSG 170
+ + V T F M A ++EL LV P
Sbjct: 252 RLAEMFSGRMTVKTYGSALGADFRMLVHHATAKGSEYELEYKGKSYLVRVP--------- 302
Query: 171 LLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTP 230
L+G+ N+YN LAA+A I G P+ D + ++ + VPGR EL + +DYAHTP
Sbjct: 303 LIGKFNMYNSLAALAAVICAGIPVRDAIANLQNIPQVPGRLELFTHPGGAQIFIDYAHTP 362
Query: 231 DALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPL 290
DAL + +++EL RR+ITV GC G+ DRGKRPLM A SD I+TSDNP +E+PL
Sbjct: 363 DALENVCKTLKELCSRRLITVFGCGGDRDRGKRPLMGAAAARLSDACIVTSDNPRSEEPL 422
Query: 291 DILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVV 350
I+ + AG +P G + D R A+ A+ GD+V++
Sbjct: 423 SIISQIAAG-------------------MPEGRYAIIPD-RARAIATAIEQARLGDIVLI 462
Query: 351 AGKGHETYQIEGDKKEFFDDREESREAL 378
AGKGHE YQ + F D +E R +
Sbjct: 463 AGKGHENYQELSTGRIDFSDAKEVRRNM 490
>gi|150390644|ref|YP_001320693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Alkaliphilus metalliredigens QYMF]
gi|167017291|sp|A6TS66.1|MURE_ALKMQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|149950506|gb|ABR49034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
metalliredigens QYMF]
Length = 494
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 137/374 (36%), Positives = 210/374 (56%), Gaps = 25/374 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ +++ +I G+ ++E+ RTTP+++ +Q + +M VME SSH LAL R +
Sbjct: 131 KVGLIGTIANWI-GNTEVEAQRTTPESIDLQQIFKEMADEKVTECVMEVSSHALALERVA 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E +F + VFTNLT +H+DFH + YR AK KLF V+NIDDP+ +
Sbjct: 190 ESEFKVGVFTNLTPEHLDFHENIDNYREAKKKLFYLTTVA----NVINIDDPHGAMIAEE 245
Query: 124 GNPDVP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILA 182
P ++TF ++ K+A V +L + + TP G ++ + G + YN LA
Sbjct: 246 VKKLKPSLITFGIK-KQATVMAKNIATTLKDVTFDLVTPVGEARVTVKIPGIFSAYNALA 304
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRE 242
++A IA+G P + IV+GI+ + VPGR E + + F VIVDYAHTPDA+ ++ + +
Sbjct: 305 SIATSIAIGVPFDVIVQGIQSIPGVPGRFESVLGIKDFSVIVDYAHTPDAIENVIQAAKN 364
Query: 243 LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGW 302
+ R+ITV GC G+ DR KR +M +I+ SD++++TSDNP EDP IL + AG+
Sbjct: 365 VTEHRVITVFGCGGDRDRTKRSVMGEISGSLSDLSVITSDNPRTEDPYKILMMIEAGIKK 424
Query: 303 TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEG 362
T G + D RR A+R A+ ++GD+V++AGKGHE Q G
Sbjct: 425 T-----------------KGLYTIIED-RREAIRYAMKEAKKGDIVLIAGKGHEATQQIG 466
Query: 363 DKKEFFDDREESRE 376
FDD +RE
Sbjct: 467 SNVIIFDDCGVARE 480
>gi|86604919|ref|YP_473682.1| UDP-N-acetylmuramyl tripeptide synthetase [Synechococcus sp.
JA-3-3Ab]
gi|86553461|gb|ABC98419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
JA-3-3Ab]
Length = 529
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 193/368 (52%), Gaps = 43/368 (11%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
+P TT + +Q + + G E VME SSH LA R F AV+TNLT+DH+DF
Sbjct: 174 APHTTLFPLELQRSLRQAKEAGAEVAVMEVSSHALAQDRAWGCSFAAAVWTNLTQDHLDF 233
Query: 83 HGTEEEYRNAKAKLFSRMVDPE--RHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKA 140
HG+ E Y AKA LF PE + R VVN DD + + ++E
Sbjct: 234 HGSMENYWQAKATLF----QPEYLQGRAVVNADDEGGRRLLE-------TIPASLEPWAY 282
Query: 141 DVHPLKFELSLFE---------TQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVG 191
+ PL+ +L+ Q ++TP G L +++ L+G N+ N+LAAV V + +G
Sbjct: 283 SLQPLEGIPALWPGDVQVHPNGLQATLHTPLGTLAVAAPLVGSFNLANLLAAVGVALHLG 342
Query: 192 APLEDIVRGIEEVDAVPGRCELID-EEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIIT 250
PLE I + VPGR E + Q VIVDYAHTPD L LL ++R R+I
Sbjct: 343 IPLELIQAALPHFPGVPGRMERVTLPGQDITVIVDYAHTPDGLENLLKALRPQVQGRLIC 402
Query: 251 VVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKY 310
V GC G+ DRGKRP M +IA +D ++TSDNP EDP IL D+LAG+
Sbjct: 403 VFGCGGDRDRGKRPQMGRIAATWADRVVVTSDNPRTEDPQQILQDILAGI---------- 452
Query: 311 GENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDD 370
G + RR A+R A+ + GD VV+AGKGHE YQI G +K FDD
Sbjct: 453 ----------PGSPWAVEVDRRQAIRLAILEAQPGDTVVIAGKGHEDYQILGREKIHFDD 502
Query: 371 REESREAL 378
REE+R AL
Sbjct: 503 REEARAAL 510
>gi|56752479|ref|YP_173180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Synechococcus elongatus PCC 6301]
gi|56687438|dbj|BAD80660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase
[Synechococcus elongatus PCC 6301]
Length = 502
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 139/354 (39%), Positives = 193/354 (54%), Gaps = 24/354 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +A + G +A VME SSH L GR + FD+AVFTNLT+DH+D+HGT
Sbjct: 166 TTPFATDLQAQLATAVDAGCQAAVMEVSSHALDQGRVNGCGFDVAVFTNLTQDHLDYHGT 225
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E Y AKA+LF+ R + V+N DD I P +T+++ AD
Sbjct: 226 MEAYFAAKARLFAPPY--LRGKAVINADDAYGQRLITM-TPPGQCLTYSVVGT-ADFCTT 281
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ + + TP G S L+G+ N+ N+L A+A G +G P+E ++ + +
Sbjct: 282 DLQYGPTGVEGTIKTPDGAFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFV 341
Query: 206 AVPGRCE-LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRP 264
VPGR E ++ ++ VIVDYAHTPD+L LL + R +I V GC G+ DR KRP
Sbjct: 342 GVPGRMERVVGQDSDPTVIVDYAHTPDSLENLLKAARPFIQGELICVFGCGGDRDRTKRP 401
Query: 265 LMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHR 324
LM +IA +D I+TSDNP EDP IL D++AG+ P
Sbjct: 402 LMGEIAARLADRVIITSDNPRTEDPRQILADIVAGI-------------------PAASP 442
Query: 325 LFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + R A+R A+ + GD V++AGKGHE YQI G K FDDRE++R AL
Sbjct: 443 VVVEADRAAAIRQAILSAQPGDGVLLAGKGHEDYQILGTTKIHFDDREQARLAL 496
>gi|282897071|ref|ZP_06305073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9]
gi|281197723|gb|EFA72617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9]
Length = 495
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 146/356 (41%), Positives = 202/356 (56%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A+ +Q+ +A+ + G + +ME SSH LA R F+++VFTNLT+DH+D+H
Sbjct: 155 TTPFAIDLQHNLAQAVDAGCQLGIMEVSSHSLAQDRVFGCPFEVSVFTNLTQDHLDYHQD 214
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKA LF+ D + R V+NIDD + G + T+++ N AD
Sbjct: 215 MEDYFRAKALLFTP--DYLQGRAVINIDDQYGQR-LTIGLDKQQLWTYSINNTSADFWVS 271
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+++TP G SS L+G++N+ N+LAAVA + +G LE +V I
Sbjct: 272 DLNYQPHGVSGILHTPEGNSPFSSPLVGQYNLENLLAAVAAVLHLGLDLETVVDYIPNFP 331
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E ID Q VIVDYAHTPD+L LL + R P RII V GC G+ D+ KR
Sbjct: 332 GVPGRMERIQIDPHQDISVIVDYAHTPDSLENLLKAARPFIPGRIICVFGCGGDRDKTKR 391
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M +IA D +DV ++TSDNP E+P IL+D+L G M E +
Sbjct: 392 PKMGRIAADLADVVVVTSDNPRTENPDAILEDILTG----MPEDVS-------------- 433
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
RL + D R A+ A+ + GD V++AGKGHE YQI G +K FDDRE++R+AL
Sbjct: 434 RLVIGD-RARAIHTAILEAQPGDGVLLAGKGHEDYQILGTEKIHFDDREQARDALH 488
>gi|392948102|ref|ZP_10313718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Lactobacillus pentosus KCA1]
gi|392436752|gb|EIW14660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Lactobacillus pentosus KCA1]
Length = 493
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 150/387 (38%), Positives = 211/387 (54%), Gaps = 45/387 (11%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ I D KL + TTPD++ Q +A M G E V ME SS L LGR
Sbjct: 132 TGLIGTMYRKIK-DEKLPTANTTPDSITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHRKV--VNIDDPNATS 119
+D+DIAVFTNLT+DH+DFH T +Y AKA LF+++ P+ KV +N DDP
Sbjct: 191 IDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSPDGTNKVAVLNTDDPVGRE 250
Query: 120 FIAQGNPDVPVVTFAM--------ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGL 171
F + V+TF + +N + H +F+LS+F + ++ L
Sbjct: 251 F--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFG---------HVTHVTMQL 299
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD 231
+G+ N+YN+LAA A A G P + I++ +E+V V GR + + VIVDY+HTPD
Sbjct: 300 IGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPD 359
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
L L+++++ A + I VVGC G+ D+ KRP M KIA + S I TSDNP EDP
Sbjct: 360 GLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTM 419
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL DM+AGV P+ + D R A+ A+ + GD+V++A
Sbjct: 420 ILKDMVAGV-------------------PDANVPVYED-RHEAIAKAIEAAQPGDVVLIA 459
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI G K FDD EE+ +AL
Sbjct: 460 GKGHEDYQIIGRTKHHFDDSEEAAKAL 486
>gi|72161509|ref|YP_289166.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermobifida fusca YX]
gi|71915241|gb|AAZ55143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermobifida fusca YX]
Length = 534
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 153/385 (39%), Positives = 209/385 (54%), Gaps = 28/385 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+RTG++ +V + D +++S TTP+A + L A M ME SSH LALGR
Sbjct: 165 GMRTGLVGTVEIRVD-DERIDSSLTTPEATELHGLFALMRERDVAGAAMEVSSHALALGR 223
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
+ V +D+AVFTNL++DH+DFH +Y KA+LF+ PE + VVN DD +
Sbjct: 224 VAGVRYDVAVFTNLSQDHLDFHADLHDYFETKARLFT----PEFAKVAVVNRDDSFGRTL 279
Query: 121 I----AQGNPDVPVVTF-AMENKKADVHPLKFELSLFETQVLVNTPHGI-LEISSGLLGR 174
I QG +PV TF A + AD + L ++ V P G+ ++ S L G
Sbjct: 280 IDRITEQGA--IPVTTFSATGDTAADWYATDVVLEAGGSRFRVVGPGGMAMDASVRLPGP 337
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+ N +AA+ I G PL V G+ VPGR E +DE Q F IVDY+H P A+
Sbjct: 338 FNVANAMAAIVALIEAGVPLPTAVAGVAAARGVPGRMERVDEGQDFTAIVDYSHKPGAIE 397
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L S+R + R+ VVGC G+ DRGKRPLM + A +D ILT DNP +EDP+ I+
Sbjct: 398 AVLTSLRPITEGRLTIVVGCGGDRDRGKRPLMGEAAARLADAVILTDDNPRSEDPVTIIT 457
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
ML GV P+ R+ + RR A+ AV + GD+VVVAGKG
Sbjct: 458 SMLEGVAKV--------------PVAQRARITVEPDRRTAIELAVTRAQPGDVVVVAGKG 503
Query: 355 HETYQIEGDKKEFFDDREESREALQ 379
HE Q GD+ FDDR+ REA++
Sbjct: 504 HERGQHVGDRILPFDDRDVLREAIR 528
>gi|210622304|ref|ZP_03293073.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
gi|210154292|gb|EEA85298.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
Length = 486
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 136/384 (35%), Positives = 204/384 (53%), Gaps = 41/384 (10%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ + GDN++ S TTP++V +Q + +M+ NG + ME SSH L L R
Sbjct: 131 KVGLIGTIKIF-DGDNEVPSNSTTPESVDLQKIFKRMVDNGCDCCAMEVSSHSLELSRVD 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS-FIA 122
+ +F I +FTNLT DH+DFH T E YR AK KLF + ++N+DD + A
Sbjct: 190 DTNFKIGIFTNLTPDHLDFHKTLENYRKAKEKLFHKTT----QANIINVDDEGGRKIYEA 245
Query: 123 QGNPDVPVVTFAME--------NKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGR 174
D P T+ +E N K+D + + L TP+ +I + G+
Sbjct: 246 IKGLDTPCYTYGIEHDADFTAKNIKSDASGVAYTLV---------TPNHTEDIFIPVPGK 296
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
+YN LA +A +G ED + + V GR E + ++ VIVDYAHTPDAL
Sbjct: 297 FTVYNTLAVIAACEMLGIDKEDYLNSLRNTGGVAGRFETVPNDKGISVIVDYAHTPDALE 356
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L++ RE +I V GC G+ D KRPLM I SD I+T+DNP EDP I+
Sbjct: 357 NVLNTAREFVEGDLIAVFGCGGDRDSEKRPLMGGIGQRLSDRCIITNDNPRTEDPELIIK 416
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
D+LAG+ + + Y ++ + R+ A++ A+ ++GD++++AGKG
Sbjct: 417 DILAGLDESNENY----------------KVVMD--RKEAIKEAIESAKKGDVILIAGKG 458
Query: 355 HETYQIEGDKKEFFDDREESREAL 378
HE YQI G K FDD+E +RE L
Sbjct: 459 HENYQILGTVKHHFDDKEVAREVL 482
>gi|284045226|ref|YP_003395566.1| UDP-N-acetylmuramyl tripeptide synthetase [Conexibacter woesei DSM
14684]
gi|283949447|gb|ADB52191.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM
14684]
Length = 491
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 151/380 (39%), Positives = 208/380 (54%), Gaps = 27/380 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG+L +V + G+ + E RTT +A+ +Q + ML G A +E SSH L L R
Sbjct: 129 GRQTGLLGTVKAVVGGEAR-EVQRTTAEAIELQADLRAMLDGGDVAAAIEVSSHALELHR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V F A+FTNLT+DH+DFH T E+Y AK +LF + VVN+DDP
Sbjct: 188 ADAVRFAAAIFTNLTQDHLDFHPTMEDYFLAKRRLF----ETGPGVAVVNVDDPYGRRLA 243
Query: 122 AQGNPD-VPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ D +VT A+++ AD + L + TP G + + + L GR N+ N+
Sbjct: 244 EELRADGAALVTIALDHD-ADYRATELTTGLTGSAFTAQTPQGPIALRTPLPGRFNVQNV 302
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L AVA A+G PLE I + + VPGR E +DE Q F V+VDYAHTPD+L +L +
Sbjct: 303 LGAVAAVRALGVPLEQIAAALPQAGRVPGRFEPVDEGQGFAVLVDYAHTPDSLDNVLQAA 362
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R L R+++TV GC G+ DR KRPLM IA +D +TSDNP +EDP IL D++ G
Sbjct: 363 RGLTERQVLTVFGCGGDRDRTKRPLMGGIAARLADEAYVTSDNPRSEDPEQILRDVVEGT 422
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ- 359
G G + + RR A+ AVA +GD++V+AGKGHE Q
Sbjct: 423 G-------------------TGPHVHVEVDRRKAIFAAVAAAHDGDVLVIAGKGHEQGQE 463
Query: 360 IEGDKKEFFDDREESREALQ 379
G +K FDD +REAL+
Sbjct: 464 FAGGEKLPFDDVTVAREALR 483
>gi|421663017|ref|ZP_16103171.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC110]
gi|421693700|ref|ZP_16133333.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-692]
gi|404570337|gb|EKA75414.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-692]
gi|408714045|gb|EKL59200.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC110]
Length = 499
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD H SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYHITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVDFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|326334989|ref|ZP_08201189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325692794|gb|EGD34733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 485
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 207/383 (54%), Gaps = 47/383 (12%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++S+++ YI+ + K+++ TTPD + + M +M+ G ME SSHG+A+ R
Sbjct: 133 KVGLISTIAIYIN-EQKIDTKNTTPDVITLNRRMHQMVEEGVTHCFMEVSSHGIAMHRIE 191
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
+ F +FTNLT+DH+DFH T EYRN K K F + + + NIDD N
Sbjct: 192 GLSFAGGIFTNLTQDHLDFHKTFAEYRNTKKKFFDTL--KKDAFALTNIDDKN------- 242
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSL---FETQVLVNTPHGIL------EISSGLLGR 174
GN F ++N +A H + L F+ +L N G++ EI + L+G+
Sbjct: 243 GN-------FMLQNTQA--HKYNYALRTYADFKANILENAFSGLVLRIGQQEIWTHLIGQ 293
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N YN+LA A + +G E++ + I E+ V GR + VIVDYAHTPDAL
Sbjct: 294 FNAYNLLAIYATAVLLGMDKEEVAKQISELKPVSGRFQYFISAGNITVIVDYAHTPDALQ 353
Query: 235 RLLDSVREL-AP-RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L++++ + AP + ++T+VGC G D+GKRP+M IAT SD I TSDNP EDP I
Sbjct: 354 NVLETIKSIKAPSQHLLTLVGCGGNRDKGKRPIMANIATTMSDKVIFTSDNPREEDPQTI 413
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
L +M GV P + + D RR A++ A + GD++++AG
Sbjct: 414 LKEMEIGVN----------------PDHQSKYMTITD-RRQAIKVACNLAHAGDIILLAG 456
Query: 353 KGHETYQIEGDKKEFFDDREESR 375
KGHETYQ + FDD EE++
Sbjct: 457 KGHETYQEVKGHRSHFDDLEEAK 479
>gi|359428755|ref|ZP_09219785.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter sp. NBRC
100985]
gi|358235941|dbj|GAB01324.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter sp. NBRC
100985]
Length = 499
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/367 (37%), Positives = 204/367 (55%), Gaps = 33/367 (8%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +Q+ + G V +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQSALHDYAKQGASFVALEASSHGLEQGRLNGCDLEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A + A+ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFKFKT---LKAVVINLDDAHANIMLDAAKTNPSQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD H + L + +P G + S LLG N+ N+LA++ G L+
Sbjct: 262 TQASADYHIADLQYRLSGASFSLISPTGCYAVQSPLLGHFNVENLLASLIAAECAGFALD 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V+ + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 QLVQFVPQLQGAPGRMQVIQDDERLF--VVDYAHTPDALIQVLTTLKRHVNGQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGW---TMQEYLKYG 311
G+ DRGKRPLMT+ A D ++ ILTSDNP E+P I DM G+ + TM E
Sbjct: 380 GGDRDRGKRPLMTQAALDHANPVILTSDNPRTENPEQIFADMKQGIHFAQHTMHE----- 434
Query: 312 ENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDR 371
+HD RR A++ VA + GD+VV+AGKGHE YQ + +FDD
Sbjct: 435 ---------------IHD-RREAIKFVVAQAQAGDIVVIAGKGHENYQEIDGVRHWFDDV 478
Query: 372 EESREAL 378
E + A+
Sbjct: 479 VEVQSAI 485
>gi|425447187|ref|ZP_18827178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9443]
gi|389732309|emb|CCI03729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9443]
Length = 496
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 144/355 (40%), Positives = 204/355 (57%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +AK + G E VME SSH LA GR F + VFTNLTRDH+D+H
Sbjct: 159 TTPFANELQASLAKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKAKLFS D + + ++N+DD +A +P V+T+++ + +AD +
Sbjct: 219 MEDYFAAKAKLFS--TDYLQGKAIINVDDAYGQRLVASLSPQ-QVLTYSVSDARADFYTK 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
Q ++ TP G + +S L+G++N+ N+LAAVA + G LE ++ I +
Sbjct: 276 DLHYQPTGVQGVMVTPQGEIAFASPLVGQYNLANLLAAVAAVLECGVDLETVIAQIPQFS 335
Query: 206 AVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q VIVDYAHTPD+L +L + R R+I V GC G+ DR KR
Sbjct: 336 GVPGRMERVSIAPDQDISVIVDYAHTPDSLENVLKASRPFISGRMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM KIA + +D+ I+TSDNP E P IL+D++AG+ P+
Sbjct: 396 PLMGKIAAELADLAIVTSDNPRTESPERILEDIIAGI-------------------PSEI 436
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + R +A+ A+ + GD V++AGKGHE YQI G +K FDDRE++R AL
Sbjct: 437 TVQVISDRALAIDTAIQTAQPGDGVIIAGKGHEDYQILGTEKIHFDDREQARAAL 491
>gi|125973493|ref|YP_001037403.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium thermocellum ATCC 27405]
gi|256003309|ref|ZP_05428300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
DSM 2360]
gi|281417694|ref|ZP_06248714.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
JW20]
gi|385778590|ref|YP_005687755.1| UDP-N-acetylmuramyl tripeptide synthetase [Clostridium thermocellum
DSM 1313]
gi|419723582|ref|ZP_14250697.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
AD2]
gi|419724593|ref|ZP_14251655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
YS]
gi|125713718|gb|ABN52210.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
ATCC 27405]
gi|255992599|gb|EEU02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
DSM 2360]
gi|281409096|gb|EFB39354.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
JW20]
gi|316940270|gb|ADU74304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
DSM 1313]
gi|380772140|gb|EIC05998.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
YS]
gi|380780264|gb|EIC09947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
AD2]
Length = 485
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/393 (35%), Positives = 217/393 (55%), Gaps = 50/393 (12%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++ +++ I G L + RTTP++ +Q L ++M+ +VVME SSH L L
Sbjct: 128 FGQKVGLVGTIANMI-GHEVLPTDRTTPESYDLQELFSEMVQKNVNSVVMEVSSHALELH 186
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S +++I VFTNL+RDH+DFH T E Y NAK KLF + ++NID+
Sbjct: 187 RVSCCEYEIGVFTNLSRDHLDFHKTFENYLNAKIKLFGMC-----KKGLINIDNEFGPKV 241
Query: 121 IAQGNPDVPVVTFAMENKKADV-------HPLKFELSL----FETQVLVNTPHGILEISS 169
+ +V T ++NK AD+ HP + ++ F V VN P
Sbjct: 242 VDSARCEV--YTMGIDNK-ADLRAVDIVHHPDSVDFTVVSPWFTGDVRVNIP-------- 290
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHT 229
G+ ++YN LAA+ +G P E I +G+E+V VPGR E++D ++ + V++DYAH+
Sbjct: 291 ---GKFSVYNALAAIGTCALMGVPFEYIKKGLEKV-TVPGRAEVLDIKKDYTVMIDYAHS 346
Query: 230 PDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDP 289
PD+L +L +V+ AP R++ V GC G+ D+ KRP+M +I+ +D TI+TSDNP EDP
Sbjct: 347 PDSLENILTTVKAYAPGRVVCVFGCGGDRDKTKRPIMGRISGQLADFTIITSDNPRTEDP 406
Query: 290 LDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVV 349
I+ D+ G+ T Y + RR A++ A+ + D+++
Sbjct: 407 DAIIRDIEEGIKQTGGLYTTITD------------------RREAIKYALMNAKPKDIIL 448
Query: 350 VAGKGHETYQIEGDKKEFFDDREESREALQYVD 382
+AGKGHETY I DK FD+RE R+ L+ +D
Sbjct: 449 LAGKGHETYIILKDKTIHFDEREVVRDILKELD 481
>gi|436840224|ref|YP_007324602.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Desulfovibrio hydrothermalis AM13 = DSM 14728]
gi|432169130|emb|CCO22496.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Desulfovibrio hydrothermalis AM13 = DSM 14728]
Length = 486
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 214/392 (54%), Gaps = 45/392 (11%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G++ G+L +VSY G + E+P TTP + L+A+M + VME SSH L R
Sbjct: 126 GMKVGVLGTVSYRWPGYEQ-EAPLTTPGCWKIHELLAEMSKAKVDVAVMEVSSHALDQKR 184
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ + FD AV TN+T+DH+D+HG E Y AK LF + + R ++N DDP +
Sbjct: 185 VAGLKFDAAVITNVTQDHLDYHGDMETYFKAKCMLFKHYPNALK-RGIINFDDPYGRRLL 243
Query: 122 AQGNPDVPVVTFAMENK-KADVHPLKFELSLFETQVLVNTPHGI----------LEISSG 170
+P + F +++ +D + L E+ + T HG+ +I S
Sbjct: 244 ECYSPSI---GFGLKSAASSDENSLCGEM-------VSCTGHGMQLKMRFGDKEWQIESD 293
Query: 171 LLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTP 230
L+GR N N+LAA AVG+ +G E + + D VPGR E + +Q F + VDYAHTP
Sbjct: 294 LIGRFNGSNLLAAQAVGLHLGLAPEQM-DAFAKFDGVPGRLERVRNKQGFNIFVDYAHTP 352
Query: 231 DALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPL 290
DAL +L ++R+L +RIITV GC G+ D+ KRP+M + A SDV +LTSDNP EDPL
Sbjct: 353 DALDNVLRTLRDLNFKRIITVFGCGGDRDKVKRPIMAEAACRYSDVAVLTSDNPRTEDPL 412
Query: 291 DILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI-RRVAVRCAVAMGEEGDMVV 349
I++D+ G+ G + + D+ R A+R AVA D+++
Sbjct: 413 QIIEDVRPGL--------------------KGCAVIIEDVDRSAAIRKAVAEMNIEDVLL 452
Query: 350 VAGKGHETYQIEGDKKEFFDDREESREALQYV 381
+AGKGHETYQI G +K F D EE +A++ +
Sbjct: 453 IAGKGHETYQIIGTEKRDFSDSEEVMKAIKEI 484
>gi|294782939|ref|ZP_06748265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Fusobacterium sp. 1_1_41FAA]
gi|294481580|gb|EFG29355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Fusobacterium sp. 1_1_41FAA]
Length = 485
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/373 (38%), Positives = 205/373 (54%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y I GD E+ TTP+++ + + K L E VVME SSH L +GR +DF
Sbjct: 131 IGTIEYKI-GDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVDVLDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D + V NIDD + D
Sbjct: 190 DYALFTNLTQDHLDYHVTMENYFQAKRKLFLKLKDI--NNSVFNIDDKYGKRLYDEFIED 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ ++ + L + + + + ++ LLG N+YN L AVA+
Sbjct: 248 NPEIISYGIDGGDLEGEYLD------DGYIDIKFKEKVEKVKFALLGDFNLYNTLGAVAI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+G EDI+ + + A PGR E ++ Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 ARKMGISWEDILERVSNIKAAPGRFEALNCGQDYKVIVDYAHTPDALVNVIVAARNIRNG 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K A + SD+ ILTSDNP E P I D+ AG T
Sbjct: 362 NRIITIFGCGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKAGFTKT-- 419
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
+DY LF D R A++ A+ M E+ D++++ GKGHETY I G KK
Sbjct: 420 -------DDY---------LFEPD-REKAIKLAINMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>gi|428206893|ref|YP_007091246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chroococcidiopsis thermalis PCC 7203]
gi|428008814|gb|AFY87377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chroococcidiopsis thermalis PCC 7203]
Length = 510
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 210/376 (55%), Gaps = 37/376 (9%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A + GT+ VME SSH LA GR F++ VFTNLT+DH+DFH
Sbjct: 163 TTPFAVELQQQLANAVQAGTQVAVMEVSSHALAQGRVLGCPFEVGVFTNLTQDHLDFHRD 222
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKAD--VH 143
E+Y AKA LFS D + R ++N DDP I Q P+ V +++++ AD +
Sbjct: 223 MEDYFAAKALLFSP--DYLQGRAIINTDDPYGQRLIKQLPPE-RVWSYSVQAGTADFCLS 279
Query: 144 PLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEE 203
L +E + ++ +TP G +E S L+G++N+ N+LAAVA + +G L+ I + +
Sbjct: 280 DLGYEPTGVSGKL--HTPAGEVEFRSPLVGQYNLANLLAAVAAALHLGVDLQLIANVLPQ 337
Query: 204 VDAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRG 261
VPGR E + Q IVDYAHTPD+L LL + R P ++I V GC G+ DR
Sbjct: 338 FAGVPGRMERVQVSPHQDISAIVDYAHTPDSLENLLKAARPFIPGKMICVFGCGGDRDRT 397
Query: 262 KRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPN 321
KRP M KIA D +DV +TSDNP EDP IL D+LAG+ PN
Sbjct: 398 KRPKMGKIAADLADVVYVTSDNPRTEDPERILQDILAGI-------------------PN 438
Query: 322 GHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYV 381
F+ R A++ A+ + GD V++AGKGHE YQI G +K FDDRE++R AL+
Sbjct: 439 TVDPFVIGDRATAIQTAIQQAQSGDGVLIAGKGHEDYQILGTEKIHFDDREQARNALR-- 496
Query: 382 DELHQAGIDTSEFPWR 397
I SEF R
Sbjct: 497 -------IRNSEFGIR 505
>gi|384914879|ref|ZP_10015585.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
fumariolicum SolV]
gi|384527255|emb|CCG91453.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
fumariolicum SolV]
Length = 495
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ YY +++ + RT+P+ +Q L +ML +A VME SSH L GR
Sbjct: 131 GWKTGLIGTI-YYDTTVDRIPASRTSPEGSDLQQLFFQMLKANCQAAVMEVSSHALEQGR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFS--RMVDPERHRKVVNIDDPNATS 119
+F I +FTNLT+DH+D+H T E YR +K K S R V+NIDDP +
Sbjct: 190 VEGTEFRIGIFTNLTQDHLDYHLTMEAYRQSKEKFISYIRAGREGEGGVVLNIDDPQWSD 249
Query: 120 FIAQGNPDVPVVTFAMENK---KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
+ V ++T +++ K K +K++ L T +L + +++S LLGR N
Sbjct: 250 LAEKLKGKVNMITVSVQGKPTAKLKARFIKYDRLL--TVILAEWEGQLYQLNSPLLGRFN 307
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+ N+L ++ + +G PL+ +R +E VPGR E + +VDYAH+ DAL ++
Sbjct: 308 VENLLLSIGGTLLLGIPLDPTIRALESFPGVPGRMERFYAKDGLLAVVDYAHSEDALLKV 367
Query: 237 LDSVREL-APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+ ++RE+ + RII VVGC G+ DR KRP M K+A+D +D+ I TSDNP +E P I +D
Sbjct: 368 VLTLREIQSSGRIILVVGCGGDRDRTKRPKMAKVASDYADLVIFTSDNPRSESPERIFED 427
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
M GV + +++ R+ A+R A+ + GD+V VAGKGH
Sbjct: 428 MKRGV-------------------DSSKKIYWIVDRKEAIRKAIQVANPGDIVCVAGKGH 468
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
ETYQ G FDDR RE L
Sbjct: 469 ETYQEMGGVFYPFDDRLVVRECL 491
>gi|333896890|ref|YP_004470764.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112155|gb|AEF17092.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Thermoanaerobacterium xylanolyticum LX-11]
Length = 488
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 220/384 (57%), Gaps = 43/384 (11%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I GD + RTTP+++ +Q + M+ G + VVME SSH LAL R
Sbjct: 131 KVGLIGTIHNMI-GDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVMEVSSHSLALNRVD 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E FDIAVFTNLT+DH+DFH T +EY NAKAKLF RM + V+NIDD ++ I
Sbjct: 190 ECKFDIAVFTNLTQDHLDFHKTMDEYANAKAKLF-RMA---KTACVINIDDDYSSYMIE- 244
Query: 124 GNPDVPVVTFAMENK--------KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
N + VVT+ +++ K D+ KF + + + + EI+ + G
Sbjct: 245 -NSNAKVVTYGIKDYAYIMAKDIKNDIKGAKFTVQIEDIKS---------EIALKIPGLF 294
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
++YN LAA++V +G PL+ + +++V + GR E++D + + V++DYAHTPD L
Sbjct: 295 SVYNSLAAISVAFILGIPLQSVKMALKDV-KIKGRFEVLDLDVPYNVVIDYAHTPDGLEN 353
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L+ + E + I + GC G+ D+GKRP M ++A +D I+TSDNP +E+P+ I+ +
Sbjct: 354 LMKAFGEYNTGKKILLFGCGGDRDKGKRPKMGEVAGKYADFVIITSDNPRSEEPIKIIQE 413
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ G+ T Y + D R+ A++ A+++ ++ D+V++AGKGH
Sbjct: 414 IEEGIKNTKCPY-----------------TIIED-RKEAIKYALSIAKDNDVVILAGKGH 455
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQ+ DK FD+R+ R+ L
Sbjct: 456 ETYQVLKDKVIDFDERDIVRDILN 479
>gi|34499803|ref|NP_904018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chromobacterium violaceum ATCC 12472]
gi|46576920|sp|Q7NPZ4.1|MURE_CHRVO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|34105653|gb|AAQ62007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
[Chromobacterium violaceum ATCC 12472]
Length = 493
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 202/375 (53%), Gaps = 30/375 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + ++ +V +G + E+ TTPD V VQ +A+ G V ME SSHGL
Sbjct: 132 LGQKAALIGTVGNGFYG-HLTETTHTTPDPVTVQQKLAEYRRQGAHVVTMEVSSHGLDQF 190
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + V+F AVFTNLTRDH+D+HG+ E Y +K KLF + +H V+N DD
Sbjct: 191 RVNGVEFATAVFTNLTRDHLDYHGSMEAYGESKKKLF--FWEGLKH-AVINADDAFGRQL 247
Query: 121 IAQGNP-DVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
A +P VVT+ +E + DV PL +L Q+ V TP G +++ +GL+GR N N
Sbjct: 248 AAGIDPKQTRVVTYGLE--QGDVRPLALAATLEGLQLTVATPWGTVDVRTGLVGRFNAAN 305
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA +A G L+D + + GR + + V++DYAHTPDAL + L +
Sbjct: 306 LLACLATLCVNGVSLQDAAAVMARIQPARGRMQSVGGAHEPLVVIDYAHTPDALEKALAT 365
Query: 240 VRELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ E+ P R+ V GC G+ D GKRP+M IA +DV +LTSDNP +EDP I+ D+L
Sbjct: 366 LSEIRPAGGRLFCVFGCGGDRDPGKRPMMGAIAEKHADVAVLTSDNPRSEDPQAIIRDVL 425
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AG+ + R + R A+ AVA GD+V+VAGKGHE
Sbjct: 426 AGM--------------------DAARAHVEADREAAIHWAVAQARVGDVVLVAGKGHEE 465
Query: 358 YQ-IEGDKKEFFDDR 371
YQ I G K+ F D R
Sbjct: 466 YQDIAGVKRPFSDFR 480
>gi|338536727|ref|YP_004670061.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myxococcus fulvus HW-1]
gi|337262823|gb|AEI68983.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myxococcus fulvus HW-1]
Length = 507
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/378 (35%), Positives = 209/378 (55%), Gaps = 12/378 (3%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ Y G +ES TTPD + + L+ +M+ G E V+ME SSH LA R
Sbjct: 132 TGVIGTLGYKFAGKT-VESANTTPDPLELHRLLREMVDAGVETVIMEVSSHALAQERVHG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
+ F A F+NL+RDH+D+H E+Y +K KLF+ + VVN DD A+ +
Sbjct: 191 LTFKAAGFSNLSRDHLDYHKDMEDYFQSKRKLFAENLSAT-GVAVVNGDDTYASRIYNEQ 249
Query: 125 NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAV 184
+ ++ SL + ++ TP G + + S LLG HN+ NIL AV
Sbjct: 250 RGQKRMAWKFSRQGSGEISAADVSFSLQGIKGVLKTPAGDIPLKSKLLGPHNLENILLAV 309
Query: 185 AVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG---VIVDYAHTPDALSRLLDSVR 241
+G+ G D+ G+E + V GR E ++ G V+VDYAHT DAL R +++ R
Sbjct: 310 GIGLGAGFARRDVQEGVERMMPVAGRMERVENYGPSGAPAVLVDYAHTDDALKRSIEAAR 369
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
+A R+I V GC G+ D+GKRPLM +A + +D+ ++TSDNP EDP +I+ + AG+
Sbjct: 370 TMAKGRVIAVFGCGGDRDKGKRPLMGAVAGEGADLAVVTSDNPRTEDPDEIISQVTAGIE 429
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDI-RRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ + + +G + +L D RR A+ A+++ D+V++AGKGHETYQ
Sbjct: 430 KSGLRRISAAK------AKSGEKGYLVDADRRAAIEQAISLATADDVVLIAGKGHETYQQ 483
Query: 361 EGDKKEFFDDREESREAL 378
G +K FDDR+ + +AL
Sbjct: 484 VGAEKLAFDDRQVAAKAL 501
>gi|421654721|ref|ZP_16095048.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-72]
gi|408510492|gb|EKK12154.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-72]
Length = 499
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHAYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|296127816|ref|YP_003635068.1| UDP-N-acetylmuramyl tripeptide synthetase [Brachyspira murdochii
DSM 12563]
gi|296019632|gb|ADG72869.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii
DSM 12563]
Length = 508
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 219/383 (57%), Gaps = 32/383 (8%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+T ++ ++ I G ++++ TTP+++ ++N+ K L +VMEASS LA+ RC
Sbjct: 145 KTALIGTIKNMI-GKTEIKTNLTTPESIDLENIFDKALKKEVSHIVMEASSQALAMDRCD 203
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK--VVNIDDPN---AT 118
+++D A+FTN+T DH+D+HG + Y AK KLFS + + +++K +VNID N +
Sbjct: 204 YLNYDTAIFTNITEDHLDYHGDMQNYLKAKLKLFSLLKESSKNKKLAIVNIDTDNFKQIS 263
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQV-LVNTPHGILEISSGLLGRHNI 177
++I + + +VT+ + N+KAD + L+ T+ + I ++ +LGR NI
Sbjct: 264 NYIKK--LGIKMVTYGL-NEKADYYGKIISLNSKNTEYEFYSKGKFISKVKLSMLGRFNI 320
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQ-AFGVIVDYAHTPDALSRL 236
N L+ +A +E ++ + +V V GR E++ +E+ F VDY+HTPD+L +
Sbjct: 321 LNSLSVLAYVSEYKLDIEKSIKAMRKVQ-VAGRFEIVTKEKHPFIAAVDYSHTPDSLENI 379
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L R+L P+R+I V GC G+ DR KRP+M IA SD++ILT+DN ED I++D+
Sbjct: 380 LKEARKLNPKRVIVVFGCGGDRDRKKRPIMASIAEKYSDISILTADNQRTEDINQIMNDI 439
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
G + DY + R+ A+ A+ +E D+V++AGKGHE
Sbjct: 440 EKG----------FKNKDYKKIID----------RKEAIFEAIKEAKENDIVIIAGKGHE 479
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI DK FDDRE +REAL+
Sbjct: 480 TYQIFPDKTIHFDDREIAREALK 502
>gi|169794475|ref|YP_001712268.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii AYE]
gi|213158953|ref|YP_002320951.1| UDP-N-acetylmuramyl tripeptide synthetase [Acinetobacter baumannii
AB0057]
gi|301345412|ref|ZP_07226153.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii AB056]
gi|301510058|ref|ZP_07235295.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii AB058]
gi|301596006|ref|ZP_07241014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii AB059]
gi|417574342|ref|ZP_12225196.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii Canada
BC-5]
gi|421641820|ref|ZP_16082351.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
IS-235]
gi|421647724|ref|ZP_16088135.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
IS-251]
gi|421659782|ref|ZP_16099998.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-83]
gi|421698368|ref|ZP_16137910.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii IS-58]
gi|421800242|ref|ZP_16236221.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii Canada
BC1]
gi|169147402|emb|CAM85263.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii AYE]
gi|213058113|gb|ACJ43015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
AB0057]
gi|400209910|gb|EJO40880.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii Canada
BC-5]
gi|404572668|gb|EKA77710.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii IS-58]
gi|408514572|gb|EKK16178.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
IS-235]
gi|408515918|gb|EKK17497.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
IS-251]
gi|408707115|gb|EKL52409.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-83]
gi|410408450|gb|EKP60418.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii Canada
BC1]
Length = 499
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGINFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|182414444|ref|YP_001819510.1| UDP-N-acetylmuramyl tripeptide synthetase [Opitutus terrae PB90-1]
gi|177841658|gb|ACB75910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1]
Length = 499
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/377 (37%), Positives = 200/377 (53%), Gaps = 26/377 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
R G+L +++Y + G + + RTTP+++ + +MA+M G VME SSHG+ R +
Sbjct: 133 RVGLLGTINYDL-GARTVPAYRTTPESLDIYGMMAQMRDAGCRQAVMEVSSHGIDQQRVA 191
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA- 122
+ F AVFTNLTRDH+D+H T + Y K +LF+ VVN DDP + A
Sbjct: 192 GLQFGAAVFTNLTRDHLDYHKTLDAYFEVKKRLFTGGTGAAPKVAVVNFDDPYGVTLAAS 251
Query: 123 --QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ + +VTF EN +ADV L+ + + P G +EI S L+GR+N+ N+
Sbjct: 252 LKREHQSAKLVTFG-ENLQADVRAENVHLNFTNSTFRLVWPGGTMEIESPLIGRYNVSNL 310
Query: 181 LAAVAVGIAVGA-PLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
LAA+A +G P + R + VPGR E IDE Q + V+VDYAHT DAL L
Sbjct: 311 LAAIAAAWGLGRDPFVFLAR-LRAFKGVPGRMERIDEGQPYNVLVDYAHTDDALRNALGM 369
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R + P R+ V GC G DR KRPLM K + +D T+DNP E I DDM AG
Sbjct: 370 LRAITPGRLFVVFGCGGNRDRTKRPLMVKAVQEFADFAFATADNPRAEPLPQIFDDMKAG 429
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V E + + E+ RR A+ A+ + GD +++AGKGHE+YQ
Sbjct: 430 V--LAPEKITWIED-----------------RRRAISLALDAAKAGDCLLIAGKGHESYQ 470
Query: 360 IEGDKKEFFDDREESRE 376
D FDDR+ RE
Sbjct: 471 EFADTVIPFDDRQVVRE 487
>gi|333029401|ref|ZP_08457462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
iaminopimelateligase [Bacteroides coprosuis DSM 18011]
gi|332739998|gb|EGJ70480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
iaminopimelateligase [Bacteroides coprosuis DSM 18011]
Length = 486
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 207/388 (53%), Gaps = 43/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G+LS+V YI D LE+ TTPDAV + L+ M+ G + ME SSH +
Sbjct: 129 LGYKAGLLSTVCNYID-DEALETTHTTPDAVTINKLLHDMVLRGCDYAFMEVSSHAIDQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T Y AK + F + P+ +VN+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTIANYIKAKKEFFDNL--PKNAFSLVNLDDKNGMVM 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKF-ELSLFETQVLVNTPHG-ILEISSG-----LLG 173
+ +N K+ +H L F+ +V+ + +G ILEI++ G
Sbjct: 246 V--------------QNTKSAIHTYSLRSLCDFKARVIESHFNGMILEINNTDVVVQFTG 291
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
+ N+YN+LA +G ++++ I + +V GR E + + + VIVDYAHTPDAL
Sbjct: 292 KFNVYNLLAVYGTACLLGQKADEVLIAISTLKSVSGRFETLQAPKGYTVIVDYAHTPDAL 351
Query: 234 SRLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
+ +L ++ ++ ++ITVVG G D+GKRPLM K + SD I+TSDNP EDP +
Sbjct: 352 TNVLTTIHDILDGKGKVITVVGAGGNRDKGKRPLMAKESIKNSDTVIITSDNPRFEDPQE 411
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
I+ DML G+ ++ + EN RR A++ A + + D++++A
Sbjct: 412 IIKDMLDGLNTEEKQNVLTIEN-----------------RRDAIKTACMLAKTNDVILIA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHETYQ K FDD+EE R Q
Sbjct: 455 GKGHETYQNIQGVKHHFDDKEEVRNIFQ 482
>gi|86160184|ref|YP_466969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85776695|gb|ABC83532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 504
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 147/377 (38%), Positives = 205/377 (54%), Gaps = 18/377 (4%)
Query: 6 GMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEV 65
G+L ++S+ G + S TTP++ +Q ++A+M+ G VME SSH LA R + +
Sbjct: 139 GVLGTISFRFPGAERPAS-HTTPESTAIQAVLAEMVEAGARDAVMEVSSHALAQERVAGI 197
Query: 66 DFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGN 125
F A FTNLTRDH+D+H E Y AK +LF+ + P V+N DP Q
Sbjct: 198 RFQAAGFTNLTRDHLDYHRDMEAYFAAKRRLFTEHLAPG-GTAVINARDPWGARLADQLG 256
Query: 126 PDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVA 185
P V + A + L+ L T TP G + I S L+G+HN+ N+L A
Sbjct: 257 PGPRVWRYGGRAGDA-LRALEVRTGLAGTSATFETPAGAIAIRSPLVGQHNLENLLCAAG 315
Query: 186 VGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP 245
+ + +G P E + RG+ PGR E ID + V VDYAHT DAL+R++ ++R L+P
Sbjct: 316 LALGLGLPPEAVARGLAASHGAPGRLERID-GRGLSVFVDYAHTDDALARMIAALRGLSP 374
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RR++ V GC G+ DRGKRPLM A +D+ I+TSDNP EDPL I+ D+L G+ +
Sbjct: 375 RRLVCVFGCGGDRDRGKRPLMGAAAA-AADLAIVTSDNPRTEDPLAIIADVLPGLDRAGK 433
Query: 306 ----EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
D Y P+ RR A+ AV EGD V+VAGKGHE YQ
Sbjct: 434 PAIGAARARAGEDGYVVEPD---------RRAAIALAVECAREGDAVLVAGKGHEDYQQV 484
Query: 362 GDKKEFFDDREESREAL 378
G ++ F DR+E+R+AL
Sbjct: 485 GAERRPFSDRDEARKAL 501
>gi|445489872|ref|ZP_21458880.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
AA-014]
gi|444766314|gb|ELW90589.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
AA-014]
Length = 499
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 202/365 (55%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYYITDLDYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|260881848|ref|ZP_05405356.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Mitsuokella multacida DSM 20544]
gi|260847821|gb|EEX67828.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Mitsuokella multacida DSM 20544]
Length = 512
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 145/376 (38%), Positives = 206/376 (54%), Gaps = 24/376 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I D L TTPD V +Q+ +A M G + VVME SSH L R
Sbjct: 144 GYKVGLIGTIQIMIE-DEVLPIHNTTPDVVELQHTLAMMRDKGMDYVVMEVSSHALDQNR 202
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD---PERHRKVVNIDDPNAT 118
+ ++FD AVFTNLT+DH+D+H T + Y AKAKLF + + + VVNIDD
Sbjct: 203 VAGIEFDTAVFTNLTQDHLDYHKTLKNYMLAKAKLFDHVSETGCKQGKTAVVNIDDAVGA 262
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQ-VLVNTPHGILEISSGLLGRHNI 177
+ +A +T+A+E K+AD+ + + VL + G + + + G N+
Sbjct: 263 TMLAHAK--CKHLTYAIE-KEADLRATDILVHANGAEFVLHHESFGEMPLKLHITGIFNV 319
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+++AV +A I +E AVPGR EL+ Q F +IVDYAHTPD + +L
Sbjct: 320 YNVMSAVGAALAEHIDAAVIKETLEAFTAVPGRFELVKAGQDFSIIVDYAHTPDGVENVL 379
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ R++A +RII V GC G+ DR KRP+M ++A + +DV I TSDNP EDP IL +
Sbjct: 380 KTARKIAKKRIIAVFGCGGDRDRTKRPIMGRLAAELADVVIATSDNPRTEDPEFILSQVE 439
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV + H + D RR A+ A+ M E+ D+VV+ GKGHE
Sbjct: 440 EGVD---------------EAIGTKHHELIVD-RRHAIYRAIEMAEKDDIVVILGKGHEN 483
Query: 358 YQIEGDKKEFFDDREE 373
YQI DK FDD+EE
Sbjct: 484 YQILKDKTIHFDDKEE 499
>gi|428299589|ref|YP_007137895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Calothrix sp. PCC 6303]
gi|428236133|gb|AFZ01923.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Calothrix sp. PCC 6303]
Length = 495
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 210/379 (55%), Gaps = 25/379 (6%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
L+T ++ ++ G ++ + TTP AV +Q +A + G E VME SSH LA GR
Sbjct: 137 LKTALMGTLYTRWQGFSQ-TAVHTTPFAVELQQQLAAAVDAGNEYGVMEISSHALAQGRV 195
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122
F++ VF+NLT+DH+D+H E+Y NAKA LFS + + R ++NIDD I
Sbjct: 196 LGCKFEVGVFSNLTQDHLDYHKDMEDYFNAKALLFSP--NYLQGRAIINIDDSYGQRLI- 252
Query: 123 QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILA 182
Q D V ++++ N +A++ ++TP G ++ S L+G++N+ N+LA
Sbjct: 253 QALGDEKVWSYSVNNTQANLWMSDLNYQQNGISGTLHTPKGNVKFHSPLVGQYNLENLLA 312
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELID--EEQAFGVIVDYAHTPDALSRLLDSV 240
AV + L+ + I E VPGR E + E Q VIVDYAHTPD+L LL +
Sbjct: 313 AVGAVLHFDVDLDLVADAISEFPGVPGRMERVQLSENQDISVIVDYAHTPDSLENLLKAS 372
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R P +II V GC G+ D+ KRP M KIA + +DV ++TSDNP ED IL D+L G+
Sbjct: 373 RPFIPGKIICVFGCGGDRDKTKRPKMGKIAAELADVAVVTSDNPRTEDAEQILKDILVGI 432
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
N + + + D R A+R A+ + GD +++AGKGHE YQI
Sbjct: 433 P------------------ENTNPIVICD-RAQAIRTAILSAKPGDGILLAGKGHEDYQI 473
Query: 361 EGDKKEFFDDREESREALQ 379
G +K FDDRE +++AL+
Sbjct: 474 LGTEKIHFDDREHAKDALK 492
>gi|269127141|ref|YP_003300511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata
DSM 43183]
gi|268312099|gb|ACY98473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata
DSM 43183]
Length = 515
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 155/385 (40%), Positives = 206/385 (53%), Gaps = 32/385 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ T ++ +V I GD +L S TTP+A + + AKM G A ME SSH LA GR
Sbjct: 142 GVDTAVIGTVEMRI-GDTRLPSSLTTPEATDLHAIFAKMREVGVGAAAMEVSSHALAQGR 200
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
+D+AVFTNL++DH+D+H T +Y AKAKLF+ P R VVN+DD
Sbjct: 201 VGGTCYDVAVFTNLSQDHLDYHATMADYFAAKAKLFT----PAYSRVGVVNVDDGYGREL 256
Query: 121 --IAQGNPDVPVVTF-AMENKKADVHPLKFELSLFETQVLVNTPHGI-LEISSGLLGRHN 176
IAQ VP+ TF A + AD L + + P GI ++S L G N
Sbjct: 257 TRIAQ----VPLTTFSAAGDPSADWRAEDVRLGADGSVFRLVGPGGIEADVSIQLPGPFN 312
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+ N LAA+ + G PL+ G+ + VPGR E IDE Q F +VDY+H P A+ +
Sbjct: 313 VANALAAIVALVEAGLPLQVAAAGVGTLTGVPGRLEPIDEGQDFTALVDYSHKPGAVEAV 372
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L S+RE+ R+I V+GC G+ DRGKRPLM + A +DV +LT DNP +EDPL IL M
Sbjct: 373 LTSLREVTAGRLIVVLGCGGDRDRGKRPLMGETAARLADVAVLTDDNPRSEDPLAILAAM 432
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHR--LFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
+ GV LK +P R L + R A+ A+ GD+VV+AGKG
Sbjct: 433 VEGV-------LK---------VPQAERAHLVVEPDRAAAIALALGRARRGDVVVIAGKG 476
Query: 355 HETYQIEGDKKEFFDDREESREALQ 379
HE Q + FDDRE R L+
Sbjct: 477 HEQGQYVAGRVLPFDDREVVRAELR 501
>gi|421673532|ref|ZP_16113469.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC065]
gi|421690284|ref|ZP_16129955.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
IS-116]
gi|404564556|gb|EKA69735.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
IS-116]
gi|410385750|gb|EKP38234.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC065]
Length = 499
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|260556908|ref|ZP_05829125.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
ATCC 19606 = CIP 70.34]
gi|260409514|gb|EEX02815.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
ATCC 19606 = CIP 70.34]
gi|452949405|gb|EME54873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii MSP4-16]
Length = 499
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYYITDLSYSLAGATFHLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|217967638|ref|YP_002353144.1| UDP-N-acetylmuramyl tripeptide synthetase [Dictyoglomus turgidum
DSM 6724]
gi|217336737|gb|ACK42530.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum
DSM 6724]
Length = 492
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/377 (37%), Positives = 209/377 (55%), Gaps = 25/377 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL++G++ ++ Y I + S TTP +Q +++KM++ G + + ME SSH L+L R
Sbjct: 133 GLKSGLIGTIDYRID-EESYPSNFTTPQPQELQEILSKMVNKGVKFLAMEVSSHALSLKR 191
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V VFTNLT+DH+DFH T E+Y AK K+F + D V+N D+
Sbjct: 192 IDGVSLKAVVFTNLTQDHLDFHKTMEDYFQAKLKIFDHLEDE--GFAVINRDNEWTKRI- 248
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
D V+ ++E + D++ K+E + + + TP G I + L G+ NIYNIL
Sbjct: 249 --NLADKRVLWASLE--EGDIYLKKYENTNSGMILEIATPLGDTVIDTKLRGKFNIYNIL 304
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AV V I +G PLEDI + + V GR E I E Q F VIVDYAHTPD L +L +++
Sbjct: 305 FAVGVLIGLGEPLEDISKILSTFKGVKGRLEFIREGQNFNVIVDYAHTPDGLYNVLQTIK 364
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
E R+I V GC G+ D KR M +I+ +DV I+TSDNP EDP+ I+ ++ G+
Sbjct: 365 EFTKGRVIVVFGCGGDRDPTKRGKMGEISAKLADVVIVTSDNPRTEDPMKIIREIEKGIK 424
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
+ G DY F+ + R A++ A+ + +E D V++AGKGHE YQI
Sbjct: 425 -------RVGRLDY----------FVIENREEAIKKAIEIAKEDDSVLIAGKGHEDYQII 467
Query: 362 GDKKEFFDDREESREAL 378
G K F D+E +R+ +
Sbjct: 468 GTIKIPFSDQEIARKYI 484
>gi|373853962|ref|ZP_09596760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Opitutaceae bacterium TAV5]
gi|391232001|ref|ZP_10268207.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutaceae bacterium
TAV1]
gi|372471829|gb|EHP31841.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Opitutaceae bacterium TAV5]
gi|391221662|gb|EIQ00083.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutaceae bacterium
TAV1]
Length = 549
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/373 (37%), Positives = 201/373 (53%), Gaps = 21/373 (5%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
R G+LS+V+Y + G + S +TTP+A+ + ++A++ G VME SSHG+A R
Sbjct: 188 RVGLLSTVNYDL-GARTVPSFKTTPEALDIYGMLAQIRDAGCREAVMEVSSHGIAQNRVL 246
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
++ AVFTNLTRDH+D+H T E+Y K +LF+ V+N+DD + + +A+
Sbjct: 247 DLSLAAAVFTNLTRDHLDYHKTLEDYFEVKTRLFTAGPGKAPRVAVINLDDEHGRALLAR 306
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
V VVT+ E+ A V + L E+ ++ P G + S L+GR+N+ N+LAA
Sbjct: 307 IPAHVKVVTYG-EHPDAQVRATEVNLGFRESTFRIHWPEGSAVVRSPLIGRYNVSNVLAA 365
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
A +G + + + VPGR E I+ Q + V+VDYAHT DAL L +R +
Sbjct: 366 AASVYGLGRDPQKFLPRLACFPGVPGRMERIESGQPWNVLVDYAHTDDALRNALGMLRAI 425
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
P R++ V GC G DR KRPLMT + +D T+DNP NE I DM AGV T
Sbjct: 426 TPGRLLVVFGCGGNRDRTKRPLMTSAVQEHADFAFATADNPRNEPLQQIFADMKAGV--T 483
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
L + E+ RR A+ A+ M + GD +++AGKGHETYQ D
Sbjct: 484 DPRKLTWIED-----------------RRRAISLALDMAKPGDCLLIAGKGHETYQEFAD 526
Query: 364 KKEFFDDREESRE 376
FDDR+ RE
Sbjct: 527 TVTPFDDRQVVRE 539
>gi|184159718|ref|YP_001848057.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
ACICU]
gi|332873767|ref|ZP_08441709.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
6014059]
gi|384133411|ref|YP_005516023.1| murE [Acinetobacter baumannii 1656-2]
gi|385239148|ref|YP_005800487.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
TCDC-AB0715]
gi|387122365|ref|YP_006288247.1| UDP-N-acetylmuramyl tripeptide synthetase [Acinetobacter baumannii
MDR-TJ]
gi|407934302|ref|YP_006849945.1| UDP-N-acetylmuramyl tripeptide synthetase [Acinetobacter baumannii
TYTH-1]
gi|416148891|ref|ZP_11602586.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
AB210]
gi|417545600|ref|ZP_12196686.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC032]
gi|417570759|ref|ZP_12221616.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC189]
gi|417576587|ref|ZP_12227432.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Acinetobacter baumannii Naval-17]
gi|417872127|ref|ZP_12517037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii ABNIH1]
gi|417875234|ref|ZP_12520054.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii ABNIH2]
gi|417880231|ref|ZP_12524765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii ABNIH3]
gi|417881185|ref|ZP_12525534.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii ABNIH4]
gi|421202145|ref|ZP_15659297.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
AC12]
gi|421535142|ref|ZP_15981406.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
AC30]
gi|421628685|ref|ZP_16069451.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC180]
gi|421668173|ref|ZP_16108213.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC087]
gi|421669154|ref|ZP_16109182.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC099]
gi|421688690|ref|ZP_16128388.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
IS-143]
gi|421704979|ref|ZP_16144420.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii ZWS1122]
gi|421708758|ref|ZP_16148131.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii ZWS1219]
gi|421791568|ref|ZP_16227741.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-2]
gi|424050737|ref|ZP_17788273.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
Ab11111]
gi|424061906|ref|ZP_17799393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
Ab44444]
gi|425754163|ref|ZP_18872030.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-113]
gi|445410634|ref|ZP_21432950.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-57]
gi|445470799|ref|ZP_21451731.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Acinetobacter baumannii OIFC338]
gi|445478756|ref|ZP_21454879.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Acinetobacter baumannii Naval-78]
gi|183211312|gb|ACC58710.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
ACICU]
gi|193078569|gb|ABO13596.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase
[Acinetobacter baumannii ATCC 17978]
gi|322509631|gb|ADX05085.1| murE [Acinetobacter baumannii 1656-2]
gi|323519649|gb|ADX94030.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
TCDC-AB0715]
gi|332737990|gb|EGJ68875.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
6014059]
gi|333364718|gb|EGK46732.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
AB210]
gi|342223816|gb|EGT88899.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii ABNIH1]
gi|342225662|gb|EGT90650.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii ABNIH3]
gi|342226515|gb|EGT91483.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii ABNIH2]
gi|342239144|gb|EGU03557.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii ABNIH4]
gi|385876857|gb|AFI93952.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
MDR-TJ]
gi|395551207|gb|EJG17216.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC189]
gi|395569808|gb|EJG30470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Acinetobacter baumannii Naval-17]
gi|398328451|gb|EJN44577.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
AC12]
gi|400383488|gb|EJP42166.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC032]
gi|404560447|gb|EKA65690.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
IS-143]
gi|404669490|gb|EKB37383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
Ab11111]
gi|404674318|gb|EKB42066.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
Ab44444]
gi|407189072|gb|EKE60300.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii ZWS1122]
gi|407189486|gb|EKE60712.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii ZWS1219]
gi|407902883|gb|AFU39714.1| UDP-N-acetylmuramyl tripeptide synthetase [Acinetobacter baumannii
TYTH-1]
gi|408705676|gb|EKL51010.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC180]
gi|409987022|gb|EKO43211.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
AC30]
gi|410380611|gb|EKP33191.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC087]
gi|410389281|gb|EKP41696.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC099]
gi|410402631|gb|EKP54741.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-2]
gi|425497556|gb|EKU63662.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-113]
gi|444772753|gb|ELW96868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Acinetobacter baumannii OIFC338]
gi|444774829|gb|ELW98905.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Acinetobacter baumannii Naval-78]
gi|444779807|gb|ELX03780.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-57]
Length = 499
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|126643214|ref|YP_001086198.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase
[Acinetobacter baumannii ATCC 17978]
Length = 414
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 60 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 119
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 120 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 176
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 177 TQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 236
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 237 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 294
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 295 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 343
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 344 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 395
Query: 374 SREAL 378
R A+
Sbjct: 396 VRSAI 400
>gi|384144831|ref|YP_005527541.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
MDR-ZJ06]
gi|347595324|gb|AEP08045.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
MDR-ZJ06]
Length = 499
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYYITDLSYSLAGAAFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|312143942|ref|YP_003995388.1| UDP-N-acetylmuramyl tripeptide synthetase [Halanaerobium
hydrogeniformans]
gi|311904593|gb|ADQ15034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium
hydrogeniformans]
Length = 487
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/382 (33%), Positives = 213/382 (55%), Gaps = 32/382 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
+T M ++ I G+ ++ + RTTP+++ + ++ G + +VME SSH L L R
Sbjct: 130 SFKTAMFGTIKNIIAGE-EISATRTTPESLDLYRYFSQAKTAGVQYIVMEVSSHALDLYR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
++DF +AVFTNL+ +H+D+H YR AK+KLFS++ P+ V+N+DD N+ +
Sbjct: 189 VHQMDFSLAVFTNLSPEHLDYHKDLASYRQAKSKLFSQL-SPDAS-AVINLDDKNSGFML 246
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSL----FETQVLVNTPHGILEISSGLLGRHNI 177
+ +++ N+ AD++ ++L +++Q L+ + L G NI
Sbjct: 247 EKSKA--HNFKYSLSNQNADLYCQNYKLKQNSLNYQSQGLIKRNFQL-----KLGGIFNI 299
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAAV +G + IV +EE+ VPGR ELI+ Q F +IVDYAHTPD + +L
Sbjct: 300 YNSLAAVLSVFLLGISADKIVNSLEEIKGVPGRFELINAGQDFQLIVDYAHTPDGMENVL 359
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ +E+ R+I + GC G+ DR KRP+M K+A D +D LT+DNP +EDP IL ++
Sbjct: 360 EAAKEITKNRLIVLFGCGGDRDRSKRPVMAKLAEDNADYVFLTNDNPRSEDPEFILSEIK 419
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
+G + Y + R+ A+ A+ ++ D++++ G+GHE
Sbjct: 420 SGFSNSFSNYEVISD------------------RKKAIVEAINFAKKDDIILILGRGHEK 461
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ DKK DDR+ + +AL+
Sbjct: 462 YQVIKDKKIELDDRKVAYQALK 483
>gi|417565962|ref|ZP_12216836.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC143]
gi|395557718|gb|EJG23719.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC143]
Length = 499
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|421788944|ref|ZP_16225212.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-82]
gi|445454098|ref|ZP_21445309.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-A-92]
gi|410399830|gb|EKP52011.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-82]
gi|444752786|gb|ELW77457.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-A-92]
Length = 499
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|239501973|ref|ZP_04661283.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
AB900]
gi|417550756|ref|ZP_12201835.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-18]
gi|421680216|ref|ZP_16120071.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC111]
gi|400386581|gb|EJP49655.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-18]
gi|410389585|gb|EKP41996.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC111]
Length = 499
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 200/365 (54%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAQADLMINSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|218258177|ref|ZP_03474579.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
DSM 18315]
gi|218225700|gb|EEC98350.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
DSM 18315]
Length = 490
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 204/381 (53%), Gaps = 29/381 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI G+ + + TTPD V + NLMA+M+ G E ME SSH +
Sbjct: 136 MGHKVGLLSTVCNYIDGE-AIPTDHTTPDPVTLHNLMARMVDAGCEYAFMEVSSHSIDQK 194
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F+ +FTNLTRDH+D+H T E Y AK K F + P + N DD +
Sbjct: 195 RISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PASAFALTNADDK--SGL 250
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +T+++ AD E T++LVN E+ + +GR N YN+
Sbjct: 251 VMLQNTAAKKLTYSLRT-LADFKGKILESHFEGTEMLVNGR----EVMTRFVGRFNAYNL 305
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +++G E+++ + ++ +V GR + I + IVDYAHTPDAL+ +L +
Sbjct: 306 LAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTIQSPLGYTAIVDYAHTPDALTNVLSGI 365
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ R+ITVVGC G D+GKRP+M K A SD ILTSDNP E+P +I+ DM+A
Sbjct: 366 HEVLDGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSDQLILTSDNPRFEEPDEIIKDMVA 425
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ E R R A++ A + +GD+++VAGKGHE Y
Sbjct: 426 GLNAADME-----------------RTLCITDRAQAIKTATMLARKGDVILVAGKGHEDY 468
Query: 359 QIEGDKKEFFDDREESREALQ 379
Q K FDDRE+ +E +
Sbjct: 469 QEVKGVKHHFDDREQLKEIFK 489
>gi|215482065|ref|YP_002324247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Acinetobacter baumannii AB307-0294]
gi|332851363|ref|ZP_08433415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
6013150]
gi|332868774|ref|ZP_08438397.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
6013113]
gi|421620902|ref|ZP_16061830.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC074]
gi|421797099|ref|ZP_16233147.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-21]
gi|213987659|gb|ACJ57958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Acinetobacter baumannii AB307-0294]
gi|332730079|gb|EGJ61407.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
6013150]
gi|332733203|gb|EGJ64400.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
6013113]
gi|408699762|gb|EKL45237.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC074]
gi|410397594|gb|EKP49840.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-21]
Length = 500
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 146 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 205
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 206 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIESAQNNPAQPKILTYSL 262
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 263 TQNTADYYITDLNYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 322
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 323 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 380
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 381 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 429
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 430 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 481
Query: 374 SREAL 378
R A+
Sbjct: 482 VRSAI 486
>gi|423342821|ref|ZP_17320535.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides johnsonii CL02T12C29]
gi|409217076|gb|EKN10055.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides johnsonii CL02T12C29]
Length = 490
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 204/381 (53%), Gaps = 29/381 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI G+ + + TTPD V + NLMA+M+ G E ME SSH +
Sbjct: 136 MGHKVGLLSTVCNYIDGE-AIPTDHTTPDPVTLHNLMARMVDAGCEYAFMEVSSHSIDQK 194
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F+ +FTNLTRDH+D+H T E Y AK K F + P + N DD +
Sbjct: 195 RISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PASAFALTNADDK--SGL 250
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +T+++ AD E T++LVN E+ + +GR N YN+
Sbjct: 251 VMLQNTAAKKLTYSLRT-LADFKGKILESHFEGTEMLVNGR----EVMTRFVGRFNAYNL 305
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +++G E+++ + ++ +V GR + I + IVDYAHTPDAL+ +L +
Sbjct: 306 LAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTIQSPLGYTAIVDYAHTPDALTNVLSGI 365
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ R+ITVVGC G D+GKRP+M K A SD ILTSDNP E+P +I+ DM+A
Sbjct: 366 HEVLDGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSDQLILTSDNPRFEEPDEIIKDMVA 425
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ E R R A++ A + +GD+++VAGKGHE Y
Sbjct: 426 GLNAADME-----------------RTLCITDRAQAIKTATMLARKGDVILVAGKGHEDY 468
Query: 359 QIEGDKKEFFDDREESREALQ 379
Q K FDDRE+ +E +
Sbjct: 469 QEVKGVKHHFDDREQLKEIFK 489
>gi|424058435|ref|ZP_17795932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
Ab33333]
gi|404665677|gb|EKB33639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
Ab33333]
Length = 499
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|228472662|ref|ZP_04057422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Capnocytophaga gingivalis ATCC 33624]
gi|228276075|gb|EEK14831.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Capnocytophaga gingivalis ATCC 33624]
Length = 494
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 211/383 (55%), Gaps = 41/383 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G++S+++ YI + + E+ TTPD + + ++ +M+ G ME SSHG+AL
Sbjct: 129 LGYKVGLISTIAIYIDQERE-ETHNTTPDVLTLNKVLRRMVGQGVTHCFMEVSSHGIALH 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F VFTNLT+DH+DFH T +YR+ K K F + P+ + NI+D N
Sbjct: 188 RIEGLVFAGGVFTNLTQDHLDFHETFAQYRDTKKKFFDHL--PKTAFALTNIEDKNGAYM 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N T+A+ + AD F+ Q+L +T G+ E+ + L+GR
Sbjct: 246 LQ--NTSAHKSTYAL-GRAAD----------FKGQLLESTFAGMTLRVGNHEVWTSLIGR 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N YN+LA A + +G +++ I + +V GR + VIVDYAHTPDAL
Sbjct: 293 FNAYNLLAIYATAVLLGEEPLEVLTQISTLRSVAGRFQYFVSPSGVTVIVDYAHTPDALQ 352
Query: 235 RLLDSVRELA--PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+++++ ++ +R+ITVVGC G D+GKRP+M IAT S+ ILTSDNP EDP +I
Sbjct: 353 NVIETILDIKDPSQRLITVVGCGGNRDKGKRPIMAHIATSLSEKVILTSDNPREEDPEEI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
L +M AG+ P N H+ RR A++ A + ++GD+V++AG
Sbjct: 413 LREMEAGI----------------TP-ENQHKSMTVTDRRQAIKVACHLAQKGDIVLIAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESR 375
KGHETYQ + FDD EE+R
Sbjct: 456 KGHETYQEVKGVRTHFDDLEEAR 478
>gi|354554972|ref|ZP_08974275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Cyanothece sp. ATCC 51472]
gi|353553126|gb|EHC22519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Cyanothece sp. ATCC 51472]
Length = 497
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 135/356 (37%), Positives = 202/356 (56%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +A+ + E VME SSH LA GR + F ++VFTNLT+DH+DFH
Sbjct: 160 TTPFAPELQEQLAEAVSANNEYCVMEVSSHALAQGRVKQCPFKVSVFTNLTQDHLDFHKD 219
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AK LF+ D + + ++N+DDP I P+ V ++++ + +AD +
Sbjct: 220 MEDYFAAKQLLFTP--DYLQEKAIINLDDPYGKRLIESLKPE-QVWSYSVGDTQADFYTR 276
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
++TP G + +S L+G+ N+ N+LAAVA + +G L I+ +
Sbjct: 277 DLTYRGNGVTGTLHTPLGTVNFTSPLVGQFNLSNVLAAVAAVLHLGLDLTTIIETLPHFL 336
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I+++Q VIVDYAHTPD+L L + R ++I V GC G+ DR KR
Sbjct: 337 GVPGRMERVQINDKQDITVIVDYAHTPDSLENSLKAARPFIQGQLICVFGCGGDRDRTKR 396
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM + + + +DV+++TSDNP EDP IL+D+L G+ T++
Sbjct: 397 PLMGQASAELADVSVVTSDNPRTEDPQRILEDILTGIPETVEP----------------- 439
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
F+ R A++ A+ + GD V++AGKGHE YQI G +K FDDREE+ +AL+
Sbjct: 440 --FVISDRAEAIKTAILQAKPGDGVLIAGKGHEDYQILGTEKIHFDDREEAGKALE 493
>gi|163790540|ref|ZP_02184969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
[Carnobacterium sp. AT7]
gi|159874143|gb|EDP68218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
[Carnobacterium sp. AT7]
Length = 492
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 214/379 (56%), Gaps = 28/379 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I G E+ TTPD++ +Q + +M +G ME SSH L GR
Sbjct: 131 KTGVIGTMYRRI-GSKVYETKNTTPDSITLQKTLREMQDSGVATCSMEVSSHSLVQGRVW 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATS 119
DFDIA+FTNL++DH+++H T E+Y AK+ LFS++ + + K ++N DDP S
Sbjct: 190 GTDFDIAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQGKPKFAILNFDDPVGRS 249
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
F + V ++ ++ + AD ++ T+ +N + + E+ L+G+ N+ N
Sbjct: 250 F--EEKTAARVFSYGID-QPADFKATDLSITNRGTRFNLNFENRVYEVQLQLVGKFNVSN 306
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
LAA+A A G L +++ IE++ V GR E++ + F VIVDYAHTPD L +L++
Sbjct: 307 ALAAIAGAYAAGLDLTSVIQSIEKISGVRGRFEIVKGDHDFAVIVDYAHTPDGLLNVLNA 366
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
V E+ + VVGC G+ DR KRP+M +IA SD I TSDNP EDP+ IL +++ G
Sbjct: 367 VNEIKTGTVFCVVGCGGDRDRTKRPIMAEIAQQNSDTVIFTSDNPRTEDPIAILHEVVDG 426
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ E Y +P+ RR A++ A+ D+V++AGKGHE YQ
Sbjct: 427 L-----------EEGTYQLIPD---------RREAIQAAIEQANTNDIVLIAGKGHEDYQ 466
Query: 360 IEGDKKEFFDDREESREAL 378
I G +K FDD EE++ A+
Sbjct: 467 IIGTEKIHFDDVEEAKRAI 485
>gi|425458180|ref|ZP_18837735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9807]
gi|389800164|emb|CCI20420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9807]
Length = 497
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 203/355 (57%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +AK + G E VME SSH LA GR F + VFTNLTRDH+D+H
Sbjct: 159 TTPFANELQASLAKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKAKLFS D + + ++N+DD +A +P V+T+++ + +AD +
Sbjct: 219 MEDYFAAKAKLFS--TDYLQGKAIINVDDAYGQRLVASLSPQ-QVLTYSVSDARADFYTK 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
Q ++ TP G + +S L+G++N+ N+LAAVA + G L ++ I +
Sbjct: 276 DLHYQPTGVQGVMVTPQGEIAFASPLVGQYNLANLLAAVAAVLECGVDLGTVIGQIPQFS 335
Query: 206 AVPGRCELIDE--EQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E + +Q VIVDYAHTPD+L +L + R R+I V GC G+ DR KR
Sbjct: 336 GVPGRMERVSTAPDQDISVIVDYAHTPDSLENVLKASRPFISGRMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM KIA + +D+ I+TSDNP E P IL+D++AG+ P+
Sbjct: 396 PLMGKIAAELADLAIVTSDNPRTESPERILEDIIAGI-------------------PSEI 436
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + R VA+ A+ + GD V++AGKGHE YQI G +K FDDRE++R AL
Sbjct: 437 TVQVISDRAVAIDTAIQTAQPGDGVIIAGKGHEDYQILGTEKIHFDDREQARAAL 491
>gi|172035734|ref|YP_001802235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cyanothece sp. ATCC 51142]
gi|171697188|gb|ACB50169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cyanothece sp. ATCC 51142]
Length = 511
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 135/356 (37%), Positives = 202/356 (56%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +A+ + E VME SSH LA GR + F ++VFTNLT+DH+DFH
Sbjct: 174 TTPFAPELQEQLAEAVSANNEYCVMEVSSHALAQGRVKQCPFKVSVFTNLTQDHLDFHKD 233
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AK LF+ D + + ++N+DDP I P+ V ++++ + +AD +
Sbjct: 234 MEDYFAAKQLLFTP--DYLQEKAIINLDDPYGKRLIESLKPE-QVWSYSVGDTQADFYTR 290
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
++TP G + +S L+G+ N+ N+LAAVA + +G L I+ +
Sbjct: 291 DLTYRGNGVTGTLHTPLGTVNFTSPLVGQFNLSNVLAAVAAVLHLGLDLTTIIETLPHFL 350
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I+++Q VIVDYAHTPD+L L + R ++I V GC G+ DR KR
Sbjct: 351 GVPGRMERVQINDKQDITVIVDYAHTPDSLENSLKAARPFIQGQLICVFGCGGDRDRTKR 410
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM + + + +DV+++TSDNP EDP IL+D+L G+ T++
Sbjct: 411 PLMGQASAELADVSVVTSDNPRTEDPQRILEDILTGIPETVEP----------------- 453
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
F+ R A++ A+ + GD V++AGKGHE YQI G +K FDDREE+ +AL+
Sbjct: 454 --FVISDRAEAIKTAILQAKPGDGVLIAGKGHEDYQILGTEKIHFDDREEAGKALE 507
>gi|425748412|ref|ZP_18866399.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-348]
gi|425491293|gb|EKU57578.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-348]
Length = 499
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 204/369 (55%), Gaps = 37/369 (10%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFS----RMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VV 131
H+D+HGT E Y AKA+LF ++V V+N+DD +A I AQ NP P ++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQFNSLKVV-------VINLDDAHADLMIKSAQNNPAQPKIL 257
Query: 132 TFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVG 191
T+++ AD + SL + + G + S LLG N+ N++AA+ G
Sbjct: 258 TYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAG 317
Query: 192 APLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIIT 250
L+ +V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++
Sbjct: 318 FDLQALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWA 375
Query: 251 VVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKY 310
V GC G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 376 VFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS------- 428
Query: 311 GENDYYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFD 369
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FD
Sbjct: 429 -----------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFD 476
Query: 370 DREESREAL 378
D E R A+
Sbjct: 477 DVVEVRSAI 485
>gi|406038468|ref|ZP_11045823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter ursingii DSM 16037 = CIP 107286]
Length = 499
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 131/360 (36%), Positives = 205/360 (56%), Gaps = 27/360 (7%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +Q L+ G +EASSHGL GR + D +IAV++NL+RDH+D+
Sbjct: 149 STHTTLDALQLQTLLHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF--IAQGNPDVP-VVTFAMENKK 139
HGT + Y AK++LF+ + V+N+DD A +A+ NP P + T++++N+
Sbjct: 209 HGTLQAYAEAKSRLFAF---EQLKVAVINLDDDYADLMLKVAKNNPSQPKIYTYSLQNQS 265
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
+D L ++ + +P GI +I S LG+ N+ N++A++ A G L +++
Sbjct: 266 SDYLVQAVNYQLHGAEIQLRSPRGIFQIQSPFLGQFNVENLIASLIAVEAAGFDLAELIE 325
Query: 200 GIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258
+ ++ PGR ++I D E+ F +VDYAHTPDAL+++L +++ ++ V GC G+
Sbjct: 326 TVPKLQGAPGRMQVIRDGERLF--VVDYAHTPDALTQVLTTLKRHTRHQLWAVFGCGGDR 383
Query: 259 DRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPP 318
DRGKRPLMT+ A + +D +LTSDNP EDP I DM V +++
Sbjct: 384 DRGKRPLMTQAALEGADPVVLTSDNPRTEDPNQIFADMREAVDFSL-------------- 429
Query: 319 LPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
H +F RR A++ AV + GD+VV+AGKGHE YQ + +FDD E + A+
Sbjct: 430 ----HHVFEIRDRREAIKFAVNEAKNGDIVVIAGKGHENYQEIDGVRHWFDDVVEVQAAI 485
>gi|359412523|ref|ZP_09204988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium sp. DL-VIII]
gi|357171407|gb|EHI99581.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium sp. DL-VIII]
Length = 486
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 221/398 (55%), Gaps = 61/398 (15%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ +++ +I G K+ + RTTP+++ +Q L + M++ G E VME SSH L L R
Sbjct: 132 KVGLIGTIANFI-GKEKIHTERTTPESLELQELFSDMVNKGVEYCVMEVSSHSLELDRVY 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP-------- 115
V F+I +FTNLTRDH+DFH T E Y NAK KLF R K+VN+DD
Sbjct: 191 GVKFEIGIFTNLTRDHLDFHKTFENYYNAKFKLFKRA-----RIKIVNVDDNYGGRVIED 245
Query: 116 ----NA---TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSL-FETQVLVNTPHGILEI 167
NA SF + N D M +++ + F+L L E Q +N P
Sbjct: 246 LNKLNADKIYSFSVKDNSDFKAFDEVMGSRE-----IMFKLKLEKEEQFTLNIP------ 294
Query: 168 SSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVD 225
G +NIYN L ++A +G E I +GIE V V GRCE + +E + +I+D
Sbjct: 295 -----GEYNIYNALGSIAACYKLGINEEAIKKGIENV-VVLGRCERVAKEYNLPYEIIID 348
Query: 226 YAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPM 285
YAHTPD L +L + + ++I+V GC G+ D+ KRP M KI+ D +D++I+TSDNP
Sbjct: 349 YAHTPDGLENILKTAKGFTKGKLISVFGCGGDRDKVKRPQMGKISIDIADISIVTSDNPR 408
Query: 286 NEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEG 345
+E+P+DI+ D+ G+ + D Y + N R+ A++ A+ + E G
Sbjct: 409 SEEPMDIIKDIETGL-----------DKDNYIVIEN---------RKEAIKKAITIAEAG 448
Query: 346 DMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDE 383
D++V+AGKGHETYQI ++ FD+RE +E L V++
Sbjct: 449 DVIVIAGKGHETYQILKNETIHFDEREVVKEILYEVNK 486
>gi|282899876|ref|ZP_06307837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis
raciborskii CS-505]
gi|281195146|gb|EFA70082.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis
raciborskii CS-505]
Length = 495
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 144/357 (40%), Positives = 203/357 (56%), Gaps = 24/357 (6%)
Query: 25 RTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHG 84
RTTP A+ +Q+ +A+ + G + +ME SSH L R F+++VFTNLT+DH+D+H
Sbjct: 154 RTTPFAIDLQHNLAQAVDAGCQLGIMEVSSHSLVQDRVFGCPFEVSVFTNLTQDHLDYHQ 213
Query: 85 TEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHP 144
E+Y AKA LF+ D + R V+NIDD + + G + T+++ N AD
Sbjct: 214 DMEDYFRAKALLFTP--DYLQGRAVINIDD-HYGQRLTIGLDKQQLWTYSINNTSADFWV 270
Query: 145 LKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEV 204
+++TP G SS L+G++N+ N+LAAVA + +G LE +V I
Sbjct: 271 SDLNYQPHGVSGILHTPEGNSPFSSPLVGQYNLENLLAAVAAVLHLGLDLETVVDYIPNF 330
Query: 205 DAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGK 262
VPGR E I+ Q VIVDYAHTPD+L LL + R P R+I V GC G+ D+ K
Sbjct: 331 PGVPGRMERIQINPHQDISVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDKTK 390
Query: 263 RPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNG 322
RP M +IA D +DV ++TSDNP E+P IL+D+L G M E +
Sbjct: 391 RPKMGRIAADLADVVVVTSDNPRTENPDAILEDILTG----MPEDVS------------- 433
Query: 323 HRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
RL + D R A+ A+ + GD V++AGKGHE YQI G +K FDDRE++R+AL
Sbjct: 434 -RLVIGD-RARAIHTAILEAQPGDGVLLAGKGHEDYQILGTEKIHFDDREQARDALH 488
>gi|302874626|ref|YP_003843259.1| UDP-N-acetylmuramyl tripeptide synthetase [Clostridium
cellulovorans 743B]
gi|307690763|ref|ZP_07633209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium cellulovorans 743B]
gi|302577483|gb|ADL51495.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
cellulovorans 743B]
Length = 481
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 214/376 (56%), Gaps = 40/376 (10%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ YI GD KL++ RTTP+++ + L M G + VME SSH L L R
Sbjct: 129 GFKVGLIGTIANYI-GDKKLKAERTTPESLELFKLFNDMTEAGVDYCVMEVSSHSLDLDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
++F+ +FTNLT+DH+D+H T E Y N+KAKLF+ ++N+DD +
Sbjct: 188 VYGIEFNSGIFTNLTQDHLDYHKTLENYFNSKAKLFTV-----SKSSIINLDDDYG---V 239
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFEL----SLFETQVLVNTPHGILEISSGLLGRHNI 177
A + +T+A++ K AD+ L S FE + N I I+ + G++NI
Sbjct: 240 ALADKTQEKLTYAID-KNADLKAENINLTSRGSTFELEY--NGEKEIFNIN--IPGKYNI 294
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYAHTPDALSR 235
N L + + G L+ I G++ + AVPGRCE++ + + G +IVDYAHTPD+L +
Sbjct: 295 QNALGCIGSILKEGVHLKVIKEGLDSLKAVPGRCEIVTQGRNLGFEIIVDYAHTPDSLLK 354
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L + RE R+I+V GC G+ D KR +M I ++ SD+ I+TSDNP +E+P +I+
Sbjct: 355 ILKTAREFTDGRLISVFGCGGDRDNSKRHIMGGIGSENSDIAIITSDNPRSEEPSEIIKQ 414
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+++G+ + D Y + + RR A++ A+ + GD++VVAGKGH
Sbjct: 415 VVSGI-----------KKDNY---------LVEEDRRKAIKLAMKTAKNGDIIVVAGKGH 454
Query: 356 ETYQIEGDKKEFFDDR 371
E YQ+ DK FD+R
Sbjct: 455 EDYQVLKDKTIDFDER 470
>gi|269837253|ref|YP_003319481.1| UDP-N-acetylmuramyl tripeptide synthetase [Sphaerobacter
thermophilus DSM 20745]
gi|269786516|gb|ACZ38659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter
thermophilus DSM 20745]
Length = 513
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 217/384 (56%), Gaps = 22/384 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLE--SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
G RTG++ +++ + GD ++ + +TTP+++ VQ L+A+M + V+EA+SHGLAL
Sbjct: 133 GYRTGLIGTIAVRV-GDEIVDHDTRQTTPESLDVQRLLAQMREARVDWAVLEATSHGLAL 191
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD----PERHRKVVNIDDP 115
R E FD+ V TN+T +H++FHGT EEYR AKA+L R+ P V+N DD
Sbjct: 192 HRLDECAFDVGVVTNITHEHLEFHGTIEEYRRAKARLLERVAGRGPRPYPGGVVLNRDDE 251
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
A + IA+ PV+ F+ + AD+ +L+ T + TP G + + L+G +
Sbjct: 252 GARA-IAEAAGTAPVLWFSAKGAPADLQADDVQLAADGTSFRLTTPRGSVPVRLNLIGAY 310
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+ N LAA VG +G E I RG+E + VPGR +D Q + VIVDYAHTPD+L +
Sbjct: 311 NVDNALAAAGVGHLLGLSPEAIARGLESLAGVPGRMRRVDLGQPYTVIVDYAHTPDSLEK 370
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L +R L P R+I V G AGE DR KRPL ++ +D ++ TS++P EDP D
Sbjct: 371 SLRLLRSLVPGRVIAVFGSAGERDRAKRPLQGAVSARLADFSVFTSEDPRFEDP----DA 426
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
++A + ++ DY + + D RR A+R A+ GD V++AGKGH
Sbjct: 427 IIAEIAAGARDAGAVEGRDY---------VCIED-RRAAIRAALDWARPGDGVLLAGKGH 476
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
E I G ++ +D+ E+ AL+
Sbjct: 477 ERCIIYGAERRPWDEAREAELALR 500
>gi|410724134|ref|ZP_11363333.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
Maddingley MBC34-26]
gi|410602420|gb|EKQ56900.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
Maddingley MBC34-26]
Length = 486
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 145/392 (36%), Positives = 220/392 (56%), Gaps = 51/392 (13%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ +++ YI G ++ + RTTP+++ +Q L A+M+ G E VME SSH L L R
Sbjct: 132 KVGLIGTIANYI-GSERIHTERTTPESLELQELFAEMVKKGVEYCVMEVSSHSLELDRVY 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM------VDPERHRKVV----NID 113
V F+I +FTNLTRDH+DFH T E Y AK KLF R VD R+V+ N+
Sbjct: 191 GVQFEIGIFTNLTRDHLDFHKTFENYYKAKFKLFERSRIKVINVDDNYGRQVIADLNNLK 250
Query: 114 DPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSL-FETQVLVNTPHGILEISSGLL 172
N SF + N D M +++ +KF+L+L E +++ P
Sbjct: 251 SDNIYSFSVKCNSDYKAFDEEMGSRE-----IKFKLNLEKEEDFILSIP----------- 294
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTP 230
G +NIYN L A+ + P+E I GIE V V GRCE + +E + +I+DYAHTP
Sbjct: 295 GEYNIYNALGAIVSCSKLEIPIEAIKNGIENV-VVLGRCERVAKEYNLPYEIIIDYAHTP 353
Query: 231 DALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPL 290
D L +L + +E ++I+V GC G+ D+ KRP M KI+ D +D++I+TSDNP +EDP+
Sbjct: 354 DGLENILKTAKEFTNGKLISVFGCGGDRDKVKRPQMGKISIDIADISIITSDNPRSEDPM 413
Query: 291 DILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVV 350
I+ D+ G+ + D Y + N R+ A++ A+++ GD++V+
Sbjct: 414 SIIKDIEEGL-----------DKDNYIVIEN---------RKEAIKKAISIANTGDVIVI 453
Query: 351 AGKGHETYQIEGDKKEFFDDREESREALQYVD 382
AGKGHETYQ+ ++ FD+RE +E L V+
Sbjct: 454 AGKGHETYQVLKNETIHFDEREVVKEILDAVN 485
>gi|445460965|ref|ZP_21448564.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC047]
gi|444772429|gb|ELW96547.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC047]
Length = 499
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 138/361 (38%), Positives = 200/361 (55%), Gaps = 29/361 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RDH+D+
Sbjct: 149 STHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMENKK 139
HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 209 HGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSLTQDT 265
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
AD + SL + + G + S LLG N+ N++AA+ G L+ +V
Sbjct: 266 ADYYIADLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQALVN 325
Query: 200 GIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258
+ ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC G+
Sbjct: 326 FVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDR 383
Query: 259 DRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPP 318
DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 384 DRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS--------------- 428
Query: 319 LPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E R A
Sbjct: 429 ---GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVEVRSA 484
Query: 378 L 378
+
Sbjct: 485 I 485
>gi|399925399|ref|ZP_10782757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Myroides injenensis M09-0166]
Length = 484
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 138/378 (36%), Positives = 207/378 (54%), Gaps = 42/378 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G+LS+V + D K E+ TTPD++ + + +M+ G E ME SSHG+
Sbjct: 130 LGYKVGLLSTVKILV-ADEKFETSHTTPDSLTINYYLNEMVEAGCEFCFMEVSSHGIVQK 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S ++F VFTNL+ DH+D+H T EYR+AK F ++ + + NIDD N
Sbjct: 189 RTSALEFKGGVFTNLSHDHLDYHKTFSEYRDAKKVFFDQL--KRQAFAITNIDDKNG--L 244
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
I N + T+A++N ++ ++ Q+L + G+L EI L+G
Sbjct: 245 IMTQNTAAKIKTYALKN-----------MADYKGQILESQFSGMLMKINQQEIWVQLIGA 293
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N YN+LA AV I +G P E+++ I ++ +V GR + + IVDYAHTPDAL
Sbjct: 294 FNGYNLLAVYAVAIELGIPSEEVLLQISKLTSVEGRFQYVVSRNKVTAIVDYAHTPDALK 353
Query: 235 RLLDSVRELAP--RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+++++ + ++ITVVGC G D+ KRP M +IA++ SD I TSDNP EDP I
Sbjct: 354 NVIETINSIRTYNEQLITVVGCGGNRDKTKRPEMAQIASELSDKVIFTSDNPRFEDPKAI 413
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
LDDM GV + Q +K + L D R+ A++ A + GD++++AG
Sbjct: 414 LDDMEKGVEF--QNVMK--------------TIVLED-RKQAIKLACQQAKSGDIILIAG 456
Query: 353 KGHETYQ-IEGDKKEFFD 369
KGHE YQ I+G K F D
Sbjct: 457 KGHENYQDIQGVKNHFND 474
>gi|427739405|ref|YP_007058949.1| UDP-N-acetylmuramyl tripeptide synthetase [Rivularia sp. PCC 7116]
gi|427374446|gb|AFY58402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rivularia sp. PCC 7116]
Length = 508
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 141/356 (39%), Positives = 194/356 (54%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q + L G E ME SSH LA GR FD+ VFTNLT+DH+D+H
Sbjct: 169 TTPFAVELQKQLKAALDAGNEYGTMEVSSHALAQGRVLGCKFDVGVFTNLTQDHLDYHKD 228
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AK+ LF D R ++N DD I + + V ++++ + AD++
Sbjct: 229 MEDYFAAKSLLFGS--DYLTGRAIINADDVYGKRLI-KSLSERKVWSYSVNDSTADLYMS 285
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ ++TP G + S L+G+ N+ N+LAAV + G L+ I I + +
Sbjct: 286 ELSYEPNGVNGTLHTPEGEVAFRSPLVGQFNLENLLAAVGAVLHFGVDLQLIASAIPKFE 345
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I Q VIVDYAHTPD+L LL + R P ++I V GC G+ D+ KR
Sbjct: 346 GVPGRMERVQISSNQDVSVIVDYAHTPDSLENLLKASRPFIPGKMICVFGCGGDRDKTKR 405
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA +D+ ++TSDNP EDP IL D+L G+ T+Q P+ G
Sbjct: 406 PKMGKIAAHLADLAVVTSDNPRTEDPEAILQDVLTGIPDTVQ------------PMVIGD 453
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
R A+R A+ E GD +++AGKGHE YQI G +K FDDRE +REAL+
Sbjct: 454 -------RASAIRTAIMEAESGDGILLAGKGHEDYQILGTEKIHFDDREHAREALE 502
>gi|262373645|ref|ZP_06066923.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205]
gi|262311398|gb|EEY92484.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205]
Length = 499
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 205/365 (56%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +Q + G + V +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQTALHDYAQQGAKFVALEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT + Y AKA LF V+N+DD A+ + A+ NP P ++T+++
Sbjct: 205 HLDYHGTLDAYAEAKALLFKFAT---LKAVVINLDDQYASIMLKAAKNNPSQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD H + L + +P G ++S LLG+ N+ N+LA++ G L
Sbjct: 262 TQTSADYHIADLQYRLSGASFTLISPVGSYAVNSPLLGQFNVENLLASLIAAEYAGFDLA 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
D+V+ + E+ PGR ++I D E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 DLVKFVPELKGAPGRMQVIQDHERLF--VVDYAHTPDALIQVLTTLKRHVTGQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ +LTSDNP E+P I DM GV +
Sbjct: 380 GGDRDRGKRPLMTQAALDYANPVVLTSDNPRTENPEQIFADMKHGVDF------------ 427
Query: 315 YYPPLPNGHRL-FLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
+GH++ +HD RR A++ V + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 428 ------DGHQIDEIHD-RREAIKFVVKQAQAGDIVVIAGKGHENYQEIDGVRHWFDDVVE 480
Query: 374 SREAL 378
+ A+
Sbjct: 481 VQSAI 485
>gi|403673604|ref|ZP_10935899.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter sp. NCTC 10304]
gi|421649952|ref|ZP_16090334.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC0162]
gi|408512351|gb|EKK13996.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC0162]
Length = 499
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 200/365 (54%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA LF VVN+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKACLFQF---NSLKVAVVNLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 AQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|421624348|ref|ZP_16065221.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC098]
gi|408701916|gb|EKL47338.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC098]
Length = 499
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 200/365 (54%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L ++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLERHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|406831012|ref|ZP_11090606.1| UDP-N-acetylmuramyl tripeptide synthetase [Schlesneria paludicola
DSM 18645]
Length = 517
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 141/378 (37%), Positives = 206/378 (54%), Gaps = 23/378 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G+L +V Y G + TTPD+ + + +M+ GT+ +E SSH L GR
Sbjct: 148 GHRCGVLGTVEYS-DGQRTESATLTTPDSRTLAQWLGQMVRTGTDYASIELSSHALHQGR 206
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ ++ + AV TN+T+DH D+H T + Y AKAK+ MV P +N+DDP A +
Sbjct: 207 AAGIELEAAVITNITQDHFDYHQTFDAYLKAKAKICD-MVRPG-GLIALNLDDPGAQTIH 264
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ TF + AD+ + SL T+ + + ++ L+GRHN+ NIL
Sbjct: 265 RRQGQSHLCQTFGL-TPAADISAQIRDQSLTGTRFRLQLNGKTWDCATRLIGRHNLSNIL 323
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AVAV G ++IV GIEE VPGR E +D Q F VDYAHT DAL R L +R
Sbjct: 324 GAVAVCTHFGLTPQEIVAGIEEFRCVPGRLERVDCGQPFEAFVDYAHTDDALQRCLSGLR 383
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
L P R+I + G G+ DR KRP + + A +D+ I+TSDNP +E+P I+D++LAG+G
Sbjct: 384 ALTPGRVICIFGAGGDRDRTKRPKLGRAAL-TADIAIVTSDNPRSENPNRIIDEILAGMG 442
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
+ Q ++ + RR A++ A+ + GD V++AGKGHE QI
Sbjct: 443 ESTQ------------------KIVVEPDRRSAIKLALEIASPGDCVLIAGKGHECEQII 484
Query: 362 GDKKEFFDDREESREALQ 379
G + FDDR+ +RE L+
Sbjct: 485 GGDRIPFDDRQITREILR 502
>gi|260891099|ref|ZP_05902362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Leptotrichia hofstadii F0254]
gi|260859126|gb|EEX73626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Leptotrichia hofstadii F0254]
Length = 509
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/378 (35%), Positives = 212/378 (56%), Gaps = 33/378 (8%)
Query: 18 DNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTR 77
D + E+ TTP+++ + L+ K + +G + +ME SSH L +GR + FD A+FTNLT+
Sbjct: 143 DKEFETVNTTPESLELIKLIDKSVKSGADYFIMEVSSHALEIGRVDMLKFDSAIFTNLTQ 202
Query: 78 DHMDFHGTEEEYRNAKAKLFSRMVDPERH--RKVVNIDDPNATSFIAQGNPDVPVVTFAM 135
DH+DFH T E Y NAK K+FS + + + H V+NIDD + N ++ ++
Sbjct: 203 DHLDFHKTMENYFNAKKKIFSMLRNNKNHTGSGVINIDDEYGAKIYLENNAK-NFISISV 261
Query: 136 ENKKADV---------HPLKFELSLFET-----QVLVNTPHGILEISSGLLGRHNIYNIL 181
+N+ AD+ + +K +++L + L NT + + L+G +N+YNIL
Sbjct: 262 KNEDADIWGDILNYTNNGMKVKINLKNYLEKYGKNLKNTEN-VYRFEIDLVGEYNLYNIL 320
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
+A +++G ++ IV+ +E + AVPGR E I + ++VD+AHT D L + +++
Sbjct: 321 GCIASALSLGIEMDFIVKKLETMPAVPGRFETIKNDLDVRIVVDFAHTDDGLLNVGKTLK 380
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
++ R+IT+ G G+ D KRP M + A SD ILTSDNP E+P IL D+ G+
Sbjct: 381 QITDNRVITIFGAGGDRDHEKRPKMAQAAIKFSDFIILTSDNPRTENPTKILADIEKGL- 439
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
GE P L + D R A++ M E+GD +++AGKGHETYQI
Sbjct: 440 --------IGE-----KFPFNRYLIIAD-RERAIKYGTRMLEKGDSLLIAGKGHETYQII 485
Query: 362 GDKKEFFDDREESREALQ 379
G +K FDDRE +EAL+
Sbjct: 486 GTEKIHFDDREIVKEALE 503
>gi|389721919|ref|ZP_10188624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase,
partial [Rhodanobacter sp. 115]
gi|388445385|gb|EIM01463.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase,
partial [Rhodanobacter sp. 115]
Length = 438
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 145/384 (37%), Positives = 197/384 (51%), Gaps = 25/384 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G R + ++ +HG + E RTTPDA+ VQ L+A G V ME SSH L G
Sbjct: 73 LGHRAATIGTLGAGLHGQLR-EGERTTPDAISVQGLLADFRDAGASHVAMEVSSHALDQG 131
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + V F++A FTNLTRDH+D+HG+ E Y AKAKLF+ P +NIDD
Sbjct: 132 RVAGVGFEVAAFTNLTRDHLDYHGSMEAYGAAKAKLFAW---PGLQAAAINIDDAFGRQL 188
Query: 121 IAQGNPDVPVVTF-AMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
A V + A + ADV + S + TP G + S LLGR N+ N
Sbjct: 189 AAHLPEGVRALRLSAAGDATADVVAEQVVTSAEGIAFALRTPWGAQAVRSSLLGRFNVDN 248
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGV-IVDYAHTPDALSRLLD 238
+LA A A+G P +V +E + + GR + + +VDYAHTPDAL + L
Sbjct: 249 LLAVAACLGALGEPFARVVAALESLQPINGRMNRLGGHDGLPLAVVDYAHTPDALEQALT 308
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
++R R+I V GC GE D GKRP M IA +DV I+T DNP ED I+ ++A
Sbjct: 309 ALRAHCDGRLICVFGCGGERDAGKRPQMGAIAERLADVAIVTDDNPRGEDGDVIVAQIVA 368
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G L + R+ + R VA+ A+ M GD+V++AGKGHETY
Sbjct: 369 G-------------------LAHPQRVRVERDRAVAIHAALGMARRGDVVLIAGKGHETY 409
Query: 359 QIEGDKKEFFDDREESREALQYVD 382
Q K FDD +REAL++ +
Sbjct: 410 QEGAAGKRPFDDLAVAREALEHFN 433
>gi|440748227|ref|ZP_20927481.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mariniradius saccharolyticus AK6]
gi|436483431|gb|ELP39485.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mariniradius saccharolyticus AK6]
Length = 487
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 223/396 (56%), Gaps = 52/396 (13%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG +TG+LS+V I+ D + + TTPDA+ +Q ++ +M+ G MEASSH +
Sbjct: 130 MGYKTGLLSTVENRIN-DQVVPATHTTPDALSIQVMLKRMVEEGCTHCFMEASSHAIVQE 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + AVFTN+T DH+D+HG+ +EY AK KLF + P+ +VN DD
Sbjct: 189 RMAGLHLAGAVFTNITHDHLDYHGSFDEYIKAKKKLFDEL--PKDAFALVNADDKRG--- 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSL---FETQVLVNTPHGI-LEISS-----GL 171
PV+ ++N KA L F L F+ ++L NT G+ L+I++ L
Sbjct: 244 --------PVM---LQNTKA--QGLTFGLKYPGDFKAKILSNTIDGLELDINNRQIWFRL 290
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGV--IVDYAHT 229
+G+ N YN+L A + +G E+++ + +V+ GR D+ +G+ IVDYAHT
Sbjct: 291 IGQFNAYNLLGVYATAVLLGEDEEEVLMQLSKVEGAQGR---FDKISLYGITAIVDYAHT 347
Query: 230 PDALSRLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNE 287
PDAL +L +++ + +++TVVGC G DR KRP+M KIAT SD ILTSDNP +E
Sbjct: 348 PDALENVLKTIQGVRTGGEQVLTVVGCGGNRDRTKRPVMAKIATQLSDKVILTSDNPRDE 407
Query: 288 DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347
+P+ IL +M AGV P+ L + D RR A++ AV M ++GD+
Sbjct: 408 EPMAILREMEAGVN----------------PVDMKRTLIIED-RREAIKTAVLMAKKGDI 450
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQYVDE 383
+++AGKGHETYQ K FDDR+ RE L +++
Sbjct: 451 ILIAGKGHETYQEIKGVKHPFDDRQVVREMLHLMNK 486
>gi|406909928|gb|EKD50076.1| hypothetical protein ACD_62C00662G0004 [uncultured bacterium]
Length = 517
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 212/385 (55%), Gaps = 26/385 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
RTG++ +V++ +G+ L +P TTPD++ +Q+L A M+ + V +E SS GL R
Sbjct: 128 RTGVIGTVNFR-YGEQVLPAPNTTPDSLTLQSLFADMVQHKVTHVALEVSSIGLEQKRTK 186
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSR-MVDPERHRK--VVNIDDPNATSF 120
FD AVFTNLT+DH+D+H + EEY AK LF+ M + K V+NIDDP
Sbjct: 187 GCQFDSAVFTNLTQDHLDYHQSMEEYYQAKKLLFTEGMSSSSKKNKLAVINIDDPAGERL 246
Query: 121 IAQ-GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ +P+ TF+ K+A + + +T+ V +++ LLG HN+ N
Sbjct: 247 CRELAGSHLPIETFSTAGKQATASLEGADYQIEQTRASVLIKGKKHTLTTNLLGEHNLKN 306
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
IL ++ VG G + +++ + VPGR E + + F VDYAHTPDAL+ ++ +
Sbjct: 307 ILTSLLVGWHSGCDMPSMLKQLVHF-TVPGRLERVPHTRCF---VDYAHTPDALTNVITA 362
Query: 240 VRELAPR-----RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+R++ + R++ V GC G+ D KRPLM I SDV+I+TSDNP E P I+D
Sbjct: 363 IRQVLQKEDVHARLLVVFGCGGDRDHTKRPLMGAIVACLSDVSIVTSDNPRTESPRKIID 422
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
D+L G+ + G Y L + D RR A+ A+ + D+V++AGKG
Sbjct: 423 DILPGITKNQSPF--EGTKGY---------LIIED-RRQAIHHALELATAKDVVLIAGKG 470
Query: 355 HETYQIEGDKKEFFDDREESREALQ 379
HE YQI G +K FDDRE RE ++
Sbjct: 471 HEDYQIIGTQKTHFDDREVVREWME 495
>gi|167752868|ref|ZP_02424995.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216]
gi|167659937|gb|EDS04067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Alistipes putredinis DSM 17216]
Length = 486
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 206/387 (53%), Gaps = 45/387 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G++S+V Y I + ++ES TTPDA+ + +MA+M+ G E ME SSH +
Sbjct: 130 LGYKVGLISTVVYRIDTE-RIESTHTTPDAIRLNEMMARMVEAGCEYCFMEVSSHAIVQE 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +F+N+T DH+D+H T EY AK F + P+ ++NIDD N
Sbjct: 189 RIRGLHFTGGIFSNITHDHLDYHKTFAEYIRAKKLFFDNL--PKEAFALINIDDRNGRVM 246
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFE-LSLFETQVLVNTPHGI------LEISSGLLG 173
+ +N +A V L + ++ F ++L P G+ E+ LG
Sbjct: 247 V--------------QNTRATVKTLSLQSMADFRCKILETHPDGMELRIDGREVWVHFLG 292
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
R N YN+L A + +GA E++++ + + V GR E + IVDYAHTPDAL
Sbjct: 293 RFNAYNLLCVYAAALLLGADREEVLQIMSTLHPVSGRFEFVRAADGTTAIVDYAHTPDAL 352
Query: 234 SRLLDSVRELAP--RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
++L +V E+ +++ + GC G+ D+ KRP M +IA + ILTSDNP +EDP
Sbjct: 353 EKVLQTVEEIRRPGQQLFVLCGCGGDRDKTKRPEMAQIAVKYATTAILTSDNPRHEDPDA 412
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
ILDDM+AG+ P L + D R A+R A + + GD++++A
Sbjct: 413 ILDDMVAGLA------------------PGDRYLRIAD-RAEAIRTAAMLAKPGDILLLA 453
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHETYQI GD K FDD+EE+ A
Sbjct: 454 GKGHETYQIVGDVKNHFDDKEEALRAF 480
>gi|414083289|ref|YP_006991997.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Carnobacterium maltaromaticum LMA28]
gi|412996873|emb|CCO10682.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Carnobacterium maltaromaticum LMA28]
Length = 491
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 210/379 (55%), Gaps = 27/379 (7%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ I G+ E+ TTPD++ +Q A+M ME SSH L GR
Sbjct: 132 TGVIGTMYRRI-GNTTFETKNTTPDSLTLQKTFAEMRQKNVTTCAMEVSSHSLVQGRVWG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHR-KVVNIDDPNATSF 120
DFDIAVFTNL++DH+++H T EEY +AK+ LFS++ +PE+ + ++N+DDP F
Sbjct: 191 TDFDIAVFTNLSQDHLEYHHTMEEYAHAKSLLFSQLGNIYNPEKPKYAILNMDDPVGRDF 250
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ V+T+ +E + AD E++ T+ L+ + L G+ NI N
Sbjct: 251 --RKMTAAEVLTYGIE-EAADFRANSIEITNHGTRFLLEFNGKEYPVHLQLAGKFNILNA 307
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L A+ A G LE I+ +E + V GR EL+ Q F V+VDYAHTPD L +L ++
Sbjct: 308 LGAIGAAYAAGLELETIISSLEGISGVRGRFELVKGPQDFAVVVDYAHTPDGLLNVLTTI 367
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
E + VVGC G+ D+ KRP M +IA D +D I TSDNP EDP +IL D++A +
Sbjct: 368 NEFKTGDVYCVVGCGGDRDKTKRPKMARIAMDYADHVIFTSDNPRTEDPNEILKDVVAEL 427
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
G + + YL L RR A+ AV + D++++AGKGHE YQI
Sbjct: 428 G-SDESYL------------------LEVDRRKAIELAVKKAQANDIILIAGKGHEDYQI 468
Query: 361 EGDKKEFFDDREESREALQ 379
G K FDD EE+++A++
Sbjct: 469 IGTTKHHFDDVEEAKKAIE 487
>gi|358011018|ref|ZP_09142828.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter sp. P8-3-8]
Length = 498
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/361 (38%), Positives = 200/361 (55%), Gaps = 30/361 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QNL+ G E V +EASSHGL GR + D +IA ++NL+RDH+D+
Sbjct: 149 SSHTTLDALHLQNLLHDFAQQGAEFVSLEASSHGLEQGRLNGCDIEIAAYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVPVVTFAMENKKA 140
HGT E Y AK++LF P V+N+DD +A + A N P V K A
Sbjct: 209 HGTLEAYAEAKSRLFKF---PSLKVAVINMDDAHADIMLNAASSNLAHPKVLTYSTAKAA 265
Query: 141 DVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200
D + SL + T G + S LLG NI N++A++ V G L+ ++
Sbjct: 266 DYQVFGIKYSLEGASFHLKTVKGEFTVKSPLLGHFNIENLVASLIVAEQAGFDLKALIAS 325
Query: 201 IEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259
+ ++ PGR ++I DE++ F +VDYAHTPDAL+++L +++ ++ V GC G+ D
Sbjct: 326 VPKLKGAPGRMQVIRDEDRLF--VVDYAHTPDALTQVLKTLKRHVENQLWAVFGCGGDRD 383
Query: 260 RGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPL 319
RGKRPLMTK A ++++ ILTSDNP EDP I DM V ++ +E
Sbjct: 384 RGKRPLMTKAALEQANPVILTSDNPRTEDPEQIFADMKRDVDFSQRE------------- 430
Query: 320 PNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
+H+I RR A++ AV + GD+VV+AGKGHE YQ + +FDD E + A
Sbjct: 431 -------IHEIHDRREAIKYAVKHAQSGDIVVIAGKGHENYQEIDGVRHWFDDVVEVQSA 483
Query: 378 L 378
+
Sbjct: 484 I 484
>gi|404371431|ref|ZP_10976736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
7_2_43FAA]
gi|226912440|gb|EEH97641.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
7_2_43FAA]
Length = 483
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 211/381 (55%), Gaps = 36/381 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ YI G+NKL+S RTTP+++ +Q L M+ E VME SSH L L R
Sbjct: 130 GKKVGLVGTIANYI-GENKLKSERTTPESLELQKLFKDMVDANCEYCVMEVSSHSLQLDR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+F++ +FTNLTRDH+DFH + + Y NAK KLF R V+N+DD +
Sbjct: 189 VYGCEFEVGIFTNLTRDHLDFHKSFDNYYNAKFKLFER-----SKASVINVDDDYGYRVL 243
Query: 122 --AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + + T+++ N +D L + +N E +S L G +N+YN
Sbjct: 244 KDVEKLENKEIKTYSI-NNNSDFKASDLMLKEGDIHFKINGE----EFNSVLPGEYNVYN 298
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQ--AFGVIVDYAHTPDALSRLL 237
L AV +G E I +G+ +V VPGRCE I + + +I+D+AHTPD L +L
Sbjct: 299 ALGAVGAMSILGISNESIRKGLLDV-VVPGRCERIGYKYDIPYDIIIDFAHTPDGLKNIL 357
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++++ R+I V GC G+ D+ KR + +I T+ +D+ I+TSDNP EDP+ I+ +++
Sbjct: 358 ETLKGFTKNRLIAVYGCGGDRDKVKRAELGRIGTELADLAIITSDNPREEDPMAIIKEIV 417
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AG+ T YL EN R A++ A+ M EEGD+VV+AGKGHE
Sbjct: 418 AGI--TKSNYLAI-EN-----------------RVEAIKLALGMAEEGDVVVLAGKGHEN 457
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI + FD+RE E L
Sbjct: 458 YQITNEGVIHFDEREVVDEIL 478
>gi|302853199|ref|XP_002958116.1| hypothetical protein VOLCADRAFT_119843 [Volvox carteri f.
nagariensis]
gi|300256584|gb|EFJ40847.1| hypothetical protein VOLCADRAFT_119843 [Volvox carteri f.
nagariensis]
Length = 696
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/379 (37%), Positives = 206/379 (54%), Gaps = 30/379 (7%)
Query: 34 QNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEE------ 87
Q L+A M VME + LALG VD ++AV T L+ HM +E+
Sbjct: 303 QKLLAGMRDRAAGVAVMEMGTKSLALGTFDYVDLNVAVVTGLSV-HMGVPASEQPEDRAD 361
Query: 88 EYRNAK----AKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVH 143
E R A L ++ PE V+N DDP + + N VPVVTF M N +ADV
Sbjct: 362 EVRAAAELAMITLERKLTQPEMQVLVINADDPATEELLRRLNNAVPVVTFGMSNSRADVF 421
Query: 144 PLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEE 203
++ +++ET+V++ TP G L+I + LLGRHN YN++AAVA G+A+ APL+ IV GIE
Sbjct: 422 VESYKNNIWETEVIIRTPTGRLQIITNLLGRHNAYNLVAAVATGVALKAPLQSIVAGIEA 481
Query: 204 VDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
V+ +PGR E+IDE Q F V+VD A +P+ L+ +LD++R R+I TV GC+G D R
Sbjct: 482 VE-IPGRSEVIDEGQEFSVVVDAAQSPETLASMLDALRRGGARQIFTVFGCSGNEDPSIR 540
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M +A KSD I+T++NP EDP D W + YL+ + D +
Sbjct: 541 PKMGAVAHAKSDYVIVTNENPRLEDP---AKDQGRTPLW-FEPYLQKAQRD--------N 588
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDK-----KEFFDDREESREAL 378
+ ++ + R A+R A+ D+V++AGKGH+ + D + + DDR E+R AL
Sbjct: 589 KRYIMEDRYSAIRAAIGTAGPEDVVLLAGKGHQDWVEHADTDGNILRGWLDDRVEARNAL 648
Query: 379 QYVDELHQ-AGIDTSEFPW 396
+ L Q + PW
Sbjct: 649 SKLKYLKQIPKFNRDTLPW 667
>gi|405354266|ref|ZP_11023646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chondromyces apiculatus DSM 436]
gi|397092509|gb|EJJ23267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Myxococcus sp. (contaminant ex DSM 436)]
Length = 507
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/378 (35%), Positives = 207/378 (54%), Gaps = 12/378 (3%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ Y G +E TTPD + + ++ +M+ G E VVME SSH LA R
Sbjct: 132 TGVIGTLGYKFAGKT-VECANTTPDPLELHRILREMVDAGVETVVMEVSSHALAQERVHG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
+ F A F+NL+RDH+D+H E+Y +K KLF+ + VVN DD A+ +
Sbjct: 191 LTFKAAGFSNLSRDHLDYHKDMEDYFQSKRKLFAENLSAT-GVAVVNGDDTYASRIYNEQ 249
Query: 125 NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAV 184
+ ++ SL + ++ TP G + + S LLG HN+ NIL AV
Sbjct: 250 RGQKRMAWKFSRQGSGEISAADVSYSLQGIKGVLKTPAGDIPLKSKLLGPHNLENILLAV 309
Query: 185 AVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG---VIVDYAHTPDALSRLLDSVR 241
+ + G D+ G+E + V GR E ++ G V+VDYAHT DAL R +++ R
Sbjct: 310 GMALGAGFARRDVQEGVERMMPVAGRMERVENYGPSGAPAVLVDYAHTDDALKRSIEAAR 369
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
LA R+I V GC G+ D+GKRPLM +A + +D+ ++TSDNP EDP +I+ + AG+
Sbjct: 370 SLAKGRVIAVFGCGGDRDKGKRPLMGAVAGEGADLAVITSDNPRTEDPEEIISQVSAGIE 429
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDI-RRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ + G+ +G + +L D RR A+ A+ + D+V++AGKGHETYQ
Sbjct: 430 KSGLRRISAGK------AKSGEKGYLVDADRRAAIEQAIGLASADDVVLIAGKGHETYQH 483
Query: 361 EGDKKEFFDDREESREAL 378
G +K FDDR+ + +AL
Sbjct: 484 VGAEKLAFDDRQVAAKAL 501
>gi|404449675|ref|ZP_11014664.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Indibacter alkaliphilus LW1]
gi|403764939|gb|EJZ25828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Indibacter alkaliphilus LW1]
Length = 468
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 148/393 (37%), Positives = 218/393 (55%), Gaps = 46/393 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G++S+V ++ D + S TTPDA+ +Q+L+ KM+ G MEASSH + G
Sbjct: 111 LGYQVGLISTVENKVN-DEVIPSTHTTPDALTIQSLLKKMVEKGCTHCFMEASSHAIVQG 169
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F AVFTN+T DH+D+HGT +EY AK LF ++ P+ +VN DD
Sbjct: 170 RTSGLVFSGAVFTNITHDHLDYHGTFDEYIRAKKMLFDQL--PKDSFALVNADDKRGMVM 227
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI-LEISSG-----LLGR 174
+ N TF + +P S F+ +VL NT G+ L+I++ ++G
Sbjct: 228 LQ--NCKAVHQTFGLR------YP-----SDFKAKVLSNTIEGLELDINNKQIWFRMIGE 274
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGV--IVDYAHTPDA 232
N YN+LA + +G E+++ + +V GR D+ FGV IVDYAHTPDA
Sbjct: 275 FNAYNLLAVFGTAVLLGEEEEEVLMQLSKVKGAQGR---FDKISLFGVTAIVDYAHTPDA 331
Query: 233 LSRLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPL 290
L +L ++ + ++ITVVGC G D+ KRP+M KIA SD ILTSDNP +E+P+
Sbjct: 332 LENVLKTISGVRTGGEQVITVVGCGGNRDKAKRPIMAKIAAKYSDKVILTSDNPRDEEPM 391
Query: 291 DILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVV 350
DIL +M AGV P+ + + D RR A++ A M ++GD+++V
Sbjct: 392 DILREMEAGVN----------------PVDFKKTVIIED-RREAIKTAGIMAKKGDIILV 434
Query: 351 AGKGHETYQIEGDKKEFFDDREESREALQYVDE 383
AGKGHETYQ K FDDR+ +E L +++
Sbjct: 435 AGKGHETYQEVKGVKHPFDDRQIVKEMLNLLNK 467
>gi|426405105|ref|YP_007024076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bdellovibrio bacteriovorus str. Tiberius]
gi|425861773|gb|AFY02809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bdellovibrio bacteriovorus str. Tiberius]
Length = 496
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 202/382 (52%), Gaps = 28/382 (7%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ +V++++ GD S TTPD V +Q + + G AV ME SSH L R
Sbjct: 134 TGVIGTVNHHL-GDQVWPSEMTTPDPVFLQKRLREFRSAGALAVAMEVSSHALDQRRVDS 192
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
V F+ +FTNLTRDH+D+H T E Y AK +LF+ ++ R I + A F +
Sbjct: 193 VPFNTVIFTNLTRDHLDYHNTMESYLEAKQRLFTDLLWKTHKRPCFAIVN-TADKFGRRL 251
Query: 125 NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAV 184
P V + K +D+ ++ T V TP G E+ + G HN+ N LAA+
Sbjct: 252 RVADPAVLWTYGEKDSDIRYEILKMDFALTHFKVWTPAGEGEVRLPMSGTHNVMNALAAL 311
Query: 185 AVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL---LDSVR 241
G++ G PL + ++ VPGR + + ++ V VDYAH+PDAL + L+ VR
Sbjct: 312 GAGLSAGLPLNICIEALDRFTGVPGRLQSVPNDKNLSVFVDYAHSPDALENVLTALNKVR 371
Query: 242 E--LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
E + RI T+ GC G+ D+GKRPLM ++A SD ++TSDNP EDP I+ D+LAG
Sbjct: 372 ENLQSKARIWTIFGCGGDRDKGKRPLMAEMALKYSDQVVITSDNPRTEDPQTIIQDILAG 431
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHET 357
VG H+ + R+ A+ + EEGD++++AGKGHE
Sbjct: 432 VG-------------------GSHKAKTTTVVDRKDAITQTLKRAEEGDVILIAGKGHED 472
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G +K F D + + EALQ
Sbjct: 473 YQIIGTQKFPFSDVKVAEEALQ 494
>gi|226943448|ref|YP_002798521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Azotobacter vinelandii DJ]
gi|226718375|gb|ACO77546.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azotobacter vinelandii
DJ]
Length = 487
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/385 (35%), Positives = 212/385 (55%), Gaps = 26/385 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G R G++ ++ HG L+S R TTPD + VQ +A + G AV ME SSH LA G
Sbjct: 127 GERCGIIGTLGNGFHG--ALQSGRHTTPDPISVQAALAGLKQAGARAVSMEVSSHALAQG 184
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S +DFD+A+FTNL+RDH+D+HG+ + Y AKA+LF+ P +V+N+DDP
Sbjct: 185 RVSALDFDVAIFTNLSRDHLDYHGSMDAYGAAKARLFAW---PGLRCRVLNLDDPFGRLL 241
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N ++ +++E++ A VH + + V TP G + S LLGR N+ N+
Sbjct: 242 AGEANASR-LIGYSLESRSAQVHCRRAHFDEQGVRAEVATPQGEGLLHSPLLGRFNLSNL 300
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA V + + L++I+R + ++ A GR + + V+VDYAHTPDAL ++L+++
Sbjct: 301 LAVVGALLGLDYALDEILRVVPQLQAPAGRMQRLGGGAKPLVVVDYAHTPDALEKVLEAL 360
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R R++ + GC G+ DRGKRPLM +A +D ++T DNP +E P I D+ +G+
Sbjct: 361 RPHVRGRLLCLFGCGGDRDRGKRPLMAAVAERLADALLITDDNPRSESPEQIFADIRSGI 420
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
G + +G R A+ +A + D++++AGKGHE YQ
Sbjct: 421 GVPEKVTCLHG-------------------RGQAIARLIAGADASDVLLLAGKGHEDYQE 461
Query: 361 EGDKKEFFDDREESREALQYVDELH 385
++ F D EE+ +AL + H
Sbjct: 462 INGVRQPFSDIEEAAKALYAWEVAH 486
>gi|383753243|ref|YP_005432146.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365295|dbj|BAL82123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 500
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/381 (37%), Positives = 209/381 (54%), Gaps = 24/381 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ + + TTPD V +Q+ +A M G + VVME SSH L R
Sbjct: 133 GYKVGLIGTIQIMME-EEVFPIHNTTPDVVELQHTLAIMRDKGMDYVVMEVSSHALDQNR 191
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD---PERHRKVVNIDDPNAT 118
+ ++FD AVF+NLT+DH+D+H T E Y+ AKAKLF + E VVN DD
Sbjct: 192 VAGIEFDTAVFSNLTQDHLDYHKTLENYKLAKAKLFDLLGQEGVKENKTAVVNADDEAGK 251
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFE-LSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + +T+ ++NK A + E L+ L G +++ + G N+
Sbjct: 252 TMLEHAQ--CRHLTYGIDNK-ASLQATNVEVLASGANFTLTEEFLGGMDLQLHITGIFNV 308
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN++AAV IA I + + E +VPGR EL+ Q F +IVDYAHTPD + +L
Sbjct: 309 YNVMAAVGAAIAEKIDPPVIRKALSEFTSVPGRFELVKAGQDFSIIVDYAHTPDGVENVL 368
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ R +A ++II V GC G+ DR KRP+M ++A +DV I TSDNP +EDP IL ++
Sbjct: 369 NTARRIAKKKIIAVFGCGGDRDRTKRPIMGRLAAKLADVVIATSDNPRSEDPAFILSEVE 428
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV T + + H + D RR A+ AV + E D+V++ GKGHE
Sbjct: 429 AGVKET---------------IGDKHHECIID-RREAIFRAVELAETDDIVIILGKGHED 472
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI DK FDD+E +R+A+
Sbjct: 473 YQILKDKTIHFDDKEVARDAV 493
>gi|445434979|ref|ZP_21440234.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC021]
gi|444755951|gb|ELW80515.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC021]
Length = 499
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/361 (38%), Positives = 200/361 (55%), Gaps = 29/361 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QN + +G +EASSHGL GR + D +IAV++NL+RDH+D+
Sbjct: 149 STHTTLDALQLQNELHAYAKHGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMENKK 139
HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 209 HGTLEAYAEAKARLFKF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSLTQNT 265
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
AD + SL + G + S LLG N+ N++AA+ G L+ +V
Sbjct: 266 ADYYITDLSYSLAGATFNLVGQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQALVN 325
Query: 200 GIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258
+ ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC G+
Sbjct: 326 FVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDR 383
Query: 259 DRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPP 318
DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 384 DRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS--------------- 428
Query: 319 LPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E R A
Sbjct: 429 ---GHRMHEIHD-RREAIKFVTQHAQAGDIVVIAGKGHENYQEINGVRHWFDDVVEVRSA 484
Query: 378 L 378
+
Sbjct: 485 I 485
>gi|417554054|ref|ZP_12205123.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-81]
gi|417560997|ref|ZP_12211876.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC137]
gi|421199578|ref|ZP_15656739.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC109]
gi|421455608|ref|ZP_15904952.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
IS-123]
gi|421635131|ref|ZP_16075734.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-13]
gi|421804040|ref|ZP_16239952.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-A-694]
gi|395523579|gb|EJG11668.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC137]
gi|395564575|gb|EJG26226.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC109]
gi|400211846|gb|EJO42808.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
IS-123]
gi|400390471|gb|EJP57518.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-81]
gi|408702683|gb|EKL48091.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
Naval-13]
gi|410412506|gb|EKP64365.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-A-694]
Length = 499
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 200/365 (54%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ L+
Sbjct: 262 TQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQASFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|320530964|ref|ZP_08031997.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
F0399]
gi|320136829|gb|EFW28778.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
F0399]
Length = 495
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 206/385 (53%), Gaps = 27/385 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ + D + TTPD V++Q ++A+M G + VVME SSH L GR
Sbjct: 132 GRRVGLVGTIQVMME-DEVFPTSNTTPDVVVMQQMLAEMRARGMDTVVMEVSSHALDQGR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP---ERHRKVVNIDDPNAT 118
+ ++FD AVFTNLT+DH+D+H T E Y AKA+LF + P V+N DD A
Sbjct: 191 VAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAGKTAVINADD--AA 248
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGL--LGRHN 176
+ + + PV+++ + + A ++ L + + + HG E + L G N
Sbjct: 249 GAVMRAHTTCPVLSYGVTQQAA---LTARDVRLAQDGMTMRLVHGDEECALTLHITGEFN 305
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN+LAA A G + I +E VPGR EL+ Q F VIVDYAHTPD + +
Sbjct: 306 VYNVLAAAGAARAEGIGYDVIRAALEGFTGVPGRFELVRAGQDFSVIVDYAHTPDGMENV 365
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L + R + RII V GC G+ DR KRP+M +I + +DV +TSDNP EDP ILD++
Sbjct: 366 LRTARAVTRGRIIVVFGCGGDRDRTKRPIMGRIGAEMADVVYITSDNPRTEDPAAILDEV 425
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG P L L D RR A+ AV GD VV+ GKGHE
Sbjct: 426 EAGA---------------LPVLGGKPYEKLVD-RRTAIFDAVRAARPGDSVVILGKGHE 469
Query: 357 TYQIEGDKKEFFDDREESREALQYV 381
TYQI + FDDRE + EA++ V
Sbjct: 470 TYQILKEGTIHFDDRETAAEAIRSV 494
>gi|261407738|ref|YP_003243979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
Y412MC10]
gi|261284201|gb|ACX66172.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
Y412MC10]
Length = 502
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/383 (35%), Positives = 213/383 (55%), Gaps = 24/383 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ Y G++ ++ TTPD + + M+ +G E V+E SSHGL +GR
Sbjct: 132 KTGIIGTL-YMKIGNHAEKTLNTTPDTIQLMRYFHTMISHGGEYGVLEVSSHGLDMGRVR 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPER---HRKVVNIDDPNATSF 120
DF VFTNL+ DH+DFH T E YRN K LF+++ + R + V+N DD +A+S+
Sbjct: 191 GCDFQTVVFTNLSHDHLDFHKTMESYRNTKELLFAQLGNSNRDMLKKAVLNADD-DASSY 249
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
A+ ++T+ ++N+ ADV + TP G E++ + G HNIYN
Sbjct: 250 YAK-RTSAQIITYGIQNQ-ADVRATHIHHTREGCAFHAETPWGSSEVNLKVHGAHNIYNA 307
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA+ + G PLE+I + + V GR + I + FGV+VDYAH PD L L S
Sbjct: 308 LAAMTTCLLEGIPLEEIRESLGQFAGVHGRFQEIQTGRRFGVVVDYAHNPDGLKATLQSA 367
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
+ + ++I V+GC GE DR KRP+M IA+ +D + T+DNP +EDP I+ +ML G+
Sbjct: 368 KAITSGKMICVMGCRGERDRSKRPIMADIASSYADYVLFTADNPFSEDPEQIMAEMLGGL 427
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
T +E +G+ + D R+ A++ AV M + D +++ G+GHET +
Sbjct: 428 --TSRE--------------SGNWEVVLD-RKEAIQRAVEMAGDEDRIIITGRGHETRYV 470
Query: 361 EGDKKEFFDDREESREALQYVDE 383
G + E F D + +LQ +++
Sbjct: 471 TGSRIESFSDEDIVMSSLQGIEQ 493
>gi|428218619|ref|YP_007103084.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudanabaena sp. PCC 7367]
gi|427990401|gb|AFY70656.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudanabaena sp. PCC 7367]
Length = 543
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/367 (38%), Positives = 203/367 (55%), Gaps = 34/367 (9%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A+ +Q + L +G +A V+E SSH LA R F AVFTNLT+DH+D+H
Sbjct: 194 TTPFAIDLQAKLRDALDDGVKAAVLEVSSHALAQRRVGGCTFAAAVFTNLTQDHLDYHKD 253
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNP-DVPVVTFAMENKKADVHP 144
E+Y AKA LF+ + R +VN+DD I PV T+++EN AD +
Sbjct: 254 IEDYFQAKALLFNPVY--LSGRAIVNLDDGYGQRLITDLQARSQPVWTYSLENDSADFYA 311
Query: 145 LKF--ELSLFETQV--LVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200
+ +L T V +++TP G +++ S L+G N+ N+LAA+A + +G L+ +
Sbjct: 312 DFYTEQLQYTPTGVTGILHTPVGTVDLRSTLVGSFNVANLLAAIATALHLGMELDQVAAL 371
Query: 201 IEEVDAVPGRCELI--------DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVV 252
I + AVPGR E + E+Q V+VDYAHTPD+L +L ++R ++ V
Sbjct: 372 IPQFKAVPGRVEQVILTDGNDRKEKQDITVVVDYAHTPDSLENVLRAMRPFTQAELVCVF 431
Query: 253 GCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGE 312
GC G+ DR KRPLM +IA +D +TSDNP E+P IL+D+LAG+ +Q ++
Sbjct: 432 GCGGDRDRTKRPLMGEIAARLADRVYVTSDNPRTEEPQGILEDILAGIPEQVQPIVEVD- 490
Query: 313 NDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDRE 372
R A+ A+ GDM+V+AGKGHE YQI G +K FDDRE
Sbjct: 491 ------------------RHQAIEMAILQANPGDMIVIAGKGHEDYQILGTEKIHFDDRE 532
Query: 373 ESREALQ 379
E++ AL+
Sbjct: 533 EAQAALR 539
>gi|23098921|ref|NP_692387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Oceanobacillus iheyensis HTE831]
gi|30316004|sp|Q8CZE6.1|MURE1_OCEIH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
1
gi|22777149|dbj|BAC13422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
(EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
Length = 493
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/379 (35%), Positives = 217/379 (57%), Gaps = 24/379 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I G+ TTP+A+ +Q M + +ME SSH L +GR
Sbjct: 132 KAGVIGTIQVKI-GEETFPIVNTTPNALELQKTFHVMREKDVKQGIMEVSSHALDMGRVY 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHRKVVNIDDPNATSF 120
D+DIAVFTNL++DH+D+H ++Y AK+ LF+++ D E+ + + I+D +++S
Sbjct: 191 GCDYDIAVFTNLSQDHLDYHQDIQDYLRAKSLLFAQLGNGYDSEKEKYAI-INDDDSSSH 249
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ + + V+T++ + K+A + EL+ + +++P G + I S L+G N+YN+
Sbjct: 250 LLKRSTAQHVITYSCK-KEATIMAKDIELTASGIRFKLHSPLGNITIQSRLMGMFNVYNM 308
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA A IA PL I + +E ++ V GR E I E Q + VIVD+AHTPD+L +L ++
Sbjct: 309 LAASAAAIASKVPLNVIQQALESIEGVNGRFEPIVEGQNYSVIVDFAHTPDSLENVLQTI 368
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
++ A R + VVGC G+ DR KRPLM ++A + +D + TSDNP EDP ILDDM A +
Sbjct: 369 KDFAKRNVYVVVGCGGDRDRKKRPLMAEVALNYADHAVFTSDNPRTEDPQAILDDMTAEL 428
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
Y + R+ + A+ ++ D+V++AGKGHETYQI
Sbjct: 429 DANSGSYEVVVD------------------RKEGIAKAIQSAQKDDIVLIAGKGHETYQI 470
Query: 361 EGDKKEFFDDREESREALQ 379
G K FDDR+ +R A++
Sbjct: 471 IGHTKYDFDDRDVARNAIK 489
>gi|425743453|ref|ZP_18861535.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-323]
gi|425494318|gb|EKU60531.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-323]
Length = 499
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 201/366 (54%), Gaps = 31/366 (8%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +Q+ + G V +EASSHGL GR + + +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQHALHDYAKQGASFVALEASSHGLEQGRLNGCELEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA LF V+N+DD +A + A+ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKALLFKFTT---LKAVVINLDDAHAQIMLDAAKANPSQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD H + L + +P G + S LLG N+ N+LA++ G L
Sbjct: 262 TQTTADYHIADLQYRLSGASFTLISPTGAYVVQSPLLGHFNVENLLASLIAAEYAGFALA 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
D+ + + ++ PGR ++I D E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 DLAQFVPQLQGAPGRMQVIQDAERLF--VVDYAHTPDALIQVLTTLKRHVTGQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ +LTSDNP E+P I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDHANPVMLTSDNPRTENPEQIFADMKQGIDFSAH--------- 430
Query: 315 YYPPLPNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDRE 372
+H+I RR A++ AVA + GD+VV+AGKGHE YQ + +FDD
Sbjct: 431 -----------VMHEIHDRREAIKFAVAQAQAGDIVVIAGKGHENYQEIDGVRHWFDDVV 479
Query: 373 ESREAL 378
E + A+
Sbjct: 480 EVQSAI 485
>gi|357043587|ref|ZP_09105278.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella histicola F0411]
gi|355368251|gb|EHG15672.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella histicola F0411]
Length = 485
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 202/379 (53%), Gaps = 30/379 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D + + TTPD + + L+ M+ G E ME SSH +
Sbjct: 129 FGYKVGLLSTVCNYID-DKAIPADHTTPDPIELNRLLGDMVAEGCEYAFMECSSHAIHQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S +DF A+FTNLTRDH+D+H T E YRNAK F + + + N DD N
Sbjct: 188 RISGLDFTGAIFTNLTRDHLDYHKTFENYRNAKKMFFDDL--SKNAFAITNADDKNG--M 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I N + T++++ + AD H E + ++ E+ +G+ N+ N+
Sbjct: 244 IMVQNTKATIKTYSIK-RMADFHAKILECHFEGMYLEIDGK----EVGVQFIGKFNVSNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA + +G EDI+ + + +V GR E I + + IVDYAHTPDAL +L ++
Sbjct: 299 LAVYGAAVMLGKKPEDILVALSTLKSVNGRLEPIQSPEGYTAIVDYAHTPDALENVLAAI 358
Query: 241 RELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
E+ + IITV G G D+GKRPLM + A +SD ILTSDNP +EDP I++DML
Sbjct: 359 HEVLDTKGGHIITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNPRDEDPQAIINDML 418
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AG+ ++ + L + D R+ A+R A M ++GD+++VAGKGHE
Sbjct: 419 AGLDTKQKKKV----------------LNIVD-RKEAIRTAAMMAKKGDVILVAGKGHEN 461
Query: 358 YQIEGDKKEFFDDREESRE 376
YQ K FDD E RE
Sbjct: 462 YQEINGVKHHFDDHEVIRE 480
>gi|226953732|ref|ZP_03824196.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC
27244]
gi|294651781|ref|ZP_06729079.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Acinetobacter haemolyticus ATCC 19194]
gi|226835520|gb|EEH67903.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC
27244]
gi|292822338|gb|EFF81243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Acinetobacter haemolyticus ATCC 19194]
Length = 499
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 198/363 (54%), Gaps = 25/363 (6%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +Q+ + G V +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQHALHDYAKLGARFVALEASSHGLEQGRLNGCDLEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD A + A+ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFKFTT---LKAVVINLDDAYAQLMLDAAKANPSQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD H E L + P G + S LLG N+ N+LA++ G L
Sbjct: 262 TQAAADYHIDALEYRLSGANFTLLAPTGSYAVHSPLLGHFNVENLLASLIAAECAGFDLA 321
Query: 196 DIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCA 255
D+V + ++ PGR ++I + +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 DLVEFVPQLQGAPGRMQVIQDANRL-FVVDYAHTPDALIQVLTTLKRHVTGQLWAVFGCG 380
Query: 256 GESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDY 315
G+ DRGKRPLMT+ A D ++ ILTSDNP ED I DM G+ +T E+L +
Sbjct: 381 GDRDRGKRPLMTQAALDHANPVILTSDNPRTEDQAQIFADMKQGMNFT--EHLMHE---- 434
Query: 316 YPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESR 375
+HD RR A++ VA + GD+VV+AGKGHE YQ + +FDD E +
Sbjct: 435 -----------IHD-RREAIKFVVAQAQAGDIVVIAGKGHENYQEIDGVRHWFDDVVEVQ 482
Query: 376 EAL 378
A+
Sbjct: 483 SAI 485
>gi|51892344|ref|YP_075035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
[Symbiobacterium thermophilum IAM 14863]
gi|51856033|dbj|BAD40191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
[Symbiobacterium thermophilum IAM 14863]
Length = 497
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 151/377 (40%), Positives = 214/377 (56%), Gaps = 22/377 (5%)
Query: 6 GMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEV 65
G+ +V + G+ + + TTP+A +Q L +M G VMEASS GL + R +V
Sbjct: 131 GLTGTVHTLMPGERR-PAGLTTPEASDLQRLFHQMAEAGCTYAVMEASSQGLDMNRVDDV 189
Query: 66 DFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP---ERHRKVVNIDDPNATSFIA 122
+FD+ +FTNLT+DH+D+HGT YR AKAKLF + P R V+N DDP + +
Sbjct: 190 EFDLGIFTNLTQDHLDYHGTFGAYREAKAKLFRLLSRPGYKPRKAAVLNADDPASEYY-- 247
Query: 123 QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILA 182
+ +VPV T+ A V ELS T++ + TP G + +S L+GR N+YN LA
Sbjct: 248 RSVTEVPVYTYGF-RPDAMVRAADVELSPAGTRLRLCTPQGEVPVSLRLVGRFNVYNALA 306
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRE 242
A A G+A G L+ I +E + VPGR + + Q FGV VDYAH+PD+L +L + R
Sbjct: 307 AAAAGVAEGIALDVIRDALEAEEGVPGRLQPVRAGQPFGVFVDYAHSPDSLENVLHTARG 366
Query: 243 LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGW 302
R+I V GC G+ D KRP+M +IA + TI+TSDNP +EDP+ I+ + +G+
Sbjct: 367 FTRGRLIVVFGCGGDRDPTKRPVMGRIAGCLAHHTIVTSDNPRSEDPVRIVQQIESGLVD 426
Query: 303 TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEG 362
+ LP GH + R A+R AV M E D++V+AGKGHETYQI
Sbjct: 427 GL--------------LP-GHTYEVVIDREEAIRRAVTMAEPDDVIVIAGKGHETYQIFK 471
Query: 363 DKKEFFDDREESREALQ 379
D+ FDDR +R ++
Sbjct: 472 DRTIPFDDRAVARSLIE 488
>gi|145356732|ref|XP_001422580.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582823|gb|ABP00897.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 680
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 151/433 (34%), Positives = 237/433 (54%), Gaps = 41/433 (9%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTT-PDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
+R G++ S Y+ + KL + DA+ Q L A + NG +A VME S+ +
Sbjct: 233 IRMGLVGSNGNYVGDELKLTAQGGRGSDALQFQQLTAGIADNGAQAAVMEVSAEQVRRKA 292
Query: 62 CSEVDFDIAVFTN-------LTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVN--- 111
++FDI T+ ++ D+ G + EY + A++F + D E R V+N
Sbjct: 293 TRGMNFDIVALTSPLEGPDAMSDRRKDYRGLDAEYSSHVAEVFKALEDAETQRAVINVDA 352
Query: 112 IDDPNATSF---IAQGNPDVPVVTFAMENKK---ADVHPLKFELSLFETQVLVNTPHGIL 165
IDD + T + + VP +T++++ + ADV+P + + SLFET V ++TP G +
Sbjct: 353 IDDNDKTPYHELCKEHAKGVPQLTYSVDPENPNGADVYPARVDYSLFETAVSLSTPAGNV 412
Query: 166 EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD 225
E+ GL+G H + I A A+G+A PL+ I G+E D++PGR EL+D Q F V+VD
Sbjct: 413 EVVVGLVGEHMVNAICCATAIGLAAEIPLDVIAAGLEATDSIPGRMELVDAGQDFSVLVD 472
Query: 226 YAHTPDALSRLLDSVRELAPRRIITVVGCAG---ESDRGKRPLMTKIATDKSDVTILTSD 282
A+TP+A+ ++DSV+ RR+ITV+GC G ES+RG+R ++ K D SDV +T+D
Sbjct: 473 SANTPEAIRSVIDSVKATNCRRVITVIGCEGEMAESERGQRAVIGKTVHDHSDVVFVTND 532
Query: 283 NPMNEDPLDILDDMLAGVGWTMQEYLKYG-----------------ENDYYPP--LPNGH 323
+P EDP IL+D+ A G+ + Y K G EN Y L N
Sbjct: 533 SPKAEDPYKILEDICA--GFRDEIYSKPGMEDEALFPFLKDMYEVHENAQYECMRLQNLV 590
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDE 383
R ++ R A+R A+ M E D+V++ G+G + Y + G +K +FDD E+R+ALQ +
Sbjct: 591 RRYVMVDRYHAIRAAIGMAERDDVVLIIGRGAKDYFVVGREKHWFDDVVEARDALQKIGA 650
Query: 384 LHQAGIDTSEFPW 396
+ +G+DT PW
Sbjct: 651 IQDSGVDTHNLPW 663
>gi|327313075|ref|YP_004328512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella denticola F0289]
gi|326945062|gb|AEA20947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella denticola F0289]
Length = 484
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 207/382 (54%), Gaps = 36/382 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI+ D ++ + TTPD + + L+A+M G E ME SSH +
Sbjct: 129 FGYKAGLLSTVCNYIN-DEEVPADHTTPDPIELNYLLARMAAAGCEYAFMECSSHAIHQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N F
Sbjct: 188 RISGLTFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGL--PKNAFALTNADDKNGM-F 244
Query: 121 IAQGNPDVPVVTFA---MENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ Q N V T++ M + +A + FE E E+ +G+ N+
Sbjct: 245 MVQ-NTKASVKTYSIKRMADFRAKILECHFEGMYLEIDG--------KEVGVQFIGKFNV 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA + +G E+I+ + + +V GR E I + F +VDYAHTPDAL+ +L
Sbjct: 296 SNLLAVYGTAVLLGRQPEEILVAMSTLKSVNGRLEPIQSPEGFTAVVDYAHTPDALANVL 355
Query: 238 DSVRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
++ ++ + +ITV G G D+GKRPLM + A +SD ILTSDNP +EDP I+D
Sbjct: 356 AAIHDVLDSKGGHVITVCGAGGHRDKGKRPLMAQEAVRQSDTVILTSDNPRDEDPQAIID 415
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
DMLAG+ +T ++ + L + D R+ A+R A M ++GD+++VAGKG
Sbjct: 416 DMLAGLDFTQKKKV----------------LTIVD-RKEAIRTAAMMAKKGDVILVAGKG 458
Query: 355 HETYQIEGDKKEFFDDREESRE 376
HE YQ K FDD E RE
Sbjct: 459 HENYQEINGVKHHFDDHEVIRE 480
>gi|422301694|ref|ZP_16389059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9806]
gi|389789206|emb|CCI14714.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9806]
Length = 496
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 204/357 (57%), Gaps = 28/357 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +AK + G E VME SSH LA GR F + VFTNLTRDH+D+H
Sbjct: 159 TTPFANELQASLAKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKAKLFS D + + ++N+DD A +P V+T+++ + AD +
Sbjct: 219 MEDYFAAKAKLFS--ADYLQGKAIINLDDAYGQRLAASLSPQ-QVLTYSVSDASADFYTK 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ + ++ TP G + +S L+G++N+ N+LAAVA + G LE ++ I +
Sbjct: 276 DLQYQPTGVEGVMVTPRGEIAFASPLVGQYNLANLLAAVAAVLECGVDLETVIAQIPQFS 335
Query: 206 AVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q VIVDYAHTPD+L +L + R R+I V GC G+ DR KR
Sbjct: 336 GVPGRMERVSIAPDQDISVIVDYAHTPDSLENVLKATRPFISGRMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM KIA + +D+ I+TSDNP E P IL+D++AG+ PP
Sbjct: 396 PLMGKIAAELADLAIVTSDNPRTESPERILEDIIAGI----------------PP----- 434
Query: 324 RLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + I R +A+ A+ + GD V++AGKGHE YQI G +K FDDRE++R AL
Sbjct: 435 EITVQVISDRALAIDTAIQAAQPGDGVIIAGKGHEDYQILGTEKIHFDDREQARAAL 491
>gi|386714171|ref|YP_006180494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Halobacillus halophilus DSM 2266]
gi|384073727|emb|CCG45220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Halobacillus halophilus DSM 2266]
Length = 491
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/384 (35%), Positives = 198/384 (51%), Gaps = 29/384 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
RTGM+ ++ I G TTPD++ +Q A+M +ME SSH L GR
Sbjct: 130 RTGMIGTIQVSIAGKT-YPVKNTTPDSLSLQRYFAEMRKAKVTTAIMEVSSHALDQGRVY 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRKVVNIDDPNATS 119
DFDIA+FTNLTRDH+D+H ++Y AK+ LF+++ + R ++N D A
Sbjct: 189 GCDFDIAIFTNLTRDHLDYHDNFDDYLRAKSLLFAQLGNGYNKGRRKFAIINKDSEQAKR 248
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
FI + + +T+ + + AD+ L ++ TP G + I+S L+G +IYN
Sbjct: 249 FIRSTSQSL--LTYGIHSN-ADIMAKNITLGETGAAYILKTPKGEIAINSPLMGLFSIYN 305
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA I G PL I E V GR E + E Q +GV++DYAHTPD+L L++
Sbjct: 306 MLAAAGAAILSGIPLTVIKHAFEMTRGVRGRFEPVREGQEYGVVIDYAHTPDSLENALNT 365
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+ E I VVGC G+ DR KRP M A +++D I T+DNP +EDP I DM +
Sbjct: 366 LSEFCKGSIYVVVGCGGDRDRSKRPYMADAAMNRADYVIFTTDNPRSEDPKQIFQDMTSH 425
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ + L + R A+ A+ + GDMV++AGKGHETYQ
Sbjct: 426 LSDPFE---------------------LIEDREQAIEHALKRAKSGDMVLIAGKGHETYQ 464
Query: 360 IEGDKKEFFDDREESREALQYVDE 383
+ FDD E ++ L+ + E
Sbjct: 465 EVNGVRHHFDDSEVAKMILKRMKE 488
>gi|376296421|ref|YP_005167651.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfovibrio
desulfuricans ND132]
gi|323458982|gb|EGB14847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
desulfuricans ND132]
Length = 507
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 149/393 (37%), Positives = 210/393 (53%), Gaps = 42/393 (10%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL+ G+L +V+Y G +++P TTPD M+ L+ M + VME SSH L R
Sbjct: 142 GLKVGVLGTVNYRWPG-FMMDAPLTTPDCWMIHELLFNMKKADVDVAVMEVSSHALDQYR 200
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK-VVNIDDPNATSF 120
+ +DFD AVFTNLT+DH+D+HG E Y AKAKLFS P ++ V+N DDP
Sbjct: 201 VAGLDFDAAVFTNLTQDHLDYHGDMETYFRAKAKLFSEY--PRLNKAAVLNYDDPYGRRL 258
Query: 121 IA--QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI-LEIS--------- 168
+A QG + ++ ++ PL + ++L T G+ +E S
Sbjct: 259 LAECQGGIGYGIGDASLVRQEVGDKPL------VQGRILSMTGQGMEIETSWKGKTWVVR 312
Query: 169 SGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAH 228
S L+G N N+LAA AVG+ +G +D+ R + VPGR E + ++ + VDYAH
Sbjct: 313 SPLVGSFNALNLLAAQAVGLQLGLNCKDMRR-LSTFPGVPGRLERVMNDKNLDIFVDYAH 371
Query: 229 TPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
TPDAL + ++ L +R+ITV GC G+ DR KRPLM A +DV +LTSDNP ED
Sbjct: 372 TPDALDNVQRTLAALDFKRLITVFGCGGDRDRTKRPLMAASAARYADVAVLTSDNPRTED 431
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P I+DD P L R+ + R A++ AVA E GD +
Sbjct: 432 PAAIMDDA-------------------RPGLAGAKRVMENPDRTEAIKMAVAEMEPGDAL 472
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREALQYV 381
++AGKGHE YQI G K F D+E + +A++ V
Sbjct: 473 LIAGKGHEDYQIIGTTKRHFSDKEAALKAIEEV 505
>gi|425739980|ref|ZP_18858160.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-487]
gi|425495628|gb|EKU61805.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-487]
Length = 499
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/361 (37%), Positives = 200/361 (55%), Gaps = 29/361 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QN + +G +EASSHGL GR + D +IAV++NL+RDH+D+
Sbjct: 149 STHTTLDALQLQNELHAYAKHGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMENKK 139
HGT E Y AKA+LF V+N+DD +A I A+ NP P ++T+++
Sbjct: 209 HGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAKNNPAQPKILTYSLTQNT 265
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
AD + SL + G + S LLG N+ N++AA+ G L+ +V
Sbjct: 266 ADYYITDLSYSLAGATFNLVGQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQALVN 325
Query: 200 GIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258
+ ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC G+
Sbjct: 326 FVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDR 383
Query: 259 DRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPP 318
DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 384 DRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS--------------- 428
Query: 319 LPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E R A
Sbjct: 429 ---GHRMHEIHD-RREAIKFVTQQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVEVRSA 484
Query: 378 L 378
+
Sbjct: 485 I 485
>gi|297583945|ref|YP_003699725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
selenitireducens MLS10]
gi|297142402|gb|ADH99159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
selenitireducens MLS10]
Length = 489
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 146/383 (38%), Positives = 211/383 (55%), Gaps = 30/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G GM+ ++ + G + E+ TTP++ +Q + +M G EAV ME SSH L LGR
Sbjct: 128 GTEAGMIGTMYTELKG-IQTETVNTTPESFTLQKRLNEMYLAGAEAVTMEVSSHALHLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPN 116
FD+AVFTNL++DH+D+H T ++Y AK+ LFS++ D + R V+N+DD
Sbjct: 187 VHGTAFDVAVFTNLSQDHLDYHQTMDQYAQAKSLLFSQLGSGGETDAYK-RAVINVDDSY 245
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
A I G VPV+T+ +E K DV E+S + + + L G +
Sbjct: 246 AD--IMLGASAVPVITYGIE-KPCDVRAEDLEVSPEGIRFTIRLNQQSYPVQLKLAGTFS 302
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN LAA A A+G E R + E+ V GR E ++ + F VIVDYAHTPD L +
Sbjct: 303 VYNALAAFAAVYAIGIEPEQAARFLSELPQVRGRFERVETDAPFHVIVDYAHTPDGLENV 362
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ + +E R + V GC G+ DR KRPLM K+A D +D ILTSDNP +E+P I+ D+
Sbjct: 363 IRTAKETTDRPVTVVFGCGGDRDRKKRPLMGKLAEDLADHVILTSDNPRSENPEAIIQDI 422
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
L+G+ + H + R+ A+ A+ EG+++V+AGKGHE
Sbjct: 423 LSGMS------------------KDNHT--VQTDRKAAITHAIMNATEGEVIVIAGKGHE 462
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI GD FDDR+ S EA++
Sbjct: 463 TYQITGDVTLDFDDRKVSLEAVK 485
>gi|421807339|ref|ZP_16243200.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC035]
gi|410416981|gb|EKP68752.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
OIFC035]
Length = 499
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 200/365 (54%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQRATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
R A+
Sbjct: 481 VRSAI 485
>gi|169632242|ref|YP_001705978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii SDF]
gi|169151034|emb|CAO99680.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter baumannii]
Length = 499
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 200/365 (54%), Gaps = 29/365 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N S TT DA+ +QN + G +EASSHGL GR + D +IAV++NL+RD
Sbjct: 145 NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 204
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAM 135
H+D+HGT E Y AKA+LF V+N+DD +A I AQ NP P ++T+++
Sbjct: 205 HLDYHGTLEAYAEAKARLFQF---NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSL 261
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
AD + SL + + G + S LLG N+ N++AA+ G L+
Sbjct: 262 TQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQ 321
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
+V + ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC
Sbjct: 322 ALVNFVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGC 379
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 380 GGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS----------- 428
Query: 315 YYPPLPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E
Sbjct: 429 -------GHRMHEIHD-RREAIKFVAEQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVE 480
Query: 374 SREAL 378
A+
Sbjct: 481 VCSAI 485
>gi|153006717|ref|YP_001381042.1| UDP-N-acetylmuramyl tripeptide synthetase [Anaeromyxobacter sp.
Fw109-5]
gi|152030290|gb|ABS28058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp.
Fw109-5]
Length = 534
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 205/381 (53%), Gaps = 13/381 (3%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
L G+L +V+ G + S TTP++ + ++A+M GT AVV+E SSH LA R
Sbjct: 165 LPVGVLGTVTQRFPGVERPAS-HTTPESTTLHAVLAEMRAAGTRAVVLEVSSHALAQERV 223
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122
+ F A FTNLTRDH+D+HG + Y AK +LF+ + P+ VVN DP A
Sbjct: 224 GGMRFAAAGFTNLTRDHLDYHGDMDAYFAAKRRLFAEHLAPD-GVAVVNARDPYGARLAA 282
Query: 123 QGNPDVPVVTFAMENKKAD--VHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
Q P V + +AD + L TP G + I S L+G HN+ N+
Sbjct: 283 QLGPGRRVWRY---GTRADDTLRAEAVSTGLAGIAATFATPAGPIAIRSPLVGAHNLENL 339
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L A + +A+G + + RG+ PGR E ID + + VDYAHT DAL R L+++
Sbjct: 340 LCAAGLALALGIAPDAVGRGLSASAGAPGRLERIDG-RGVSIFVDYAHTDDALGRALEAL 398
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R LAPRR++ V GC G+ DRGKRPLM ++A +D+ ++TSDNP E P I+ D+L G+
Sbjct: 399 RALAPRRLLCVFGCGGDRDRGKRPLMGEVAARGADLVVVTSDNPRTEAPEAIIADVLPGL 458
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
E + RR A+ AV++ GD V+VAGKGHE YQ+
Sbjct: 459 -----ERAGAARLSARAAADGARGFLVEADRRAAIALAVSLAHPGDAVLVAGKGHEDYQL 513
Query: 361 EGDKKEFFDDREESREALQYV 381
G K F DREE+R+AL +V
Sbjct: 514 VGTTKHPFSDREEARKALGFV 534
>gi|258546147|ref|ZP_05706381.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Cardiobacterium hominis ATCC 15826]
gi|258518572|gb|EEV87431.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Cardiobacterium hominis ATCC 15826]
Length = 483
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 144/390 (36%), Positives = 201/390 (51%), Gaps = 49/390 (12%)
Query: 6 GMLSSVSYYIHGDNKLES----PRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
ML ++ Y KL++ TTPD + VQ +A+ G E V ME SSH LA GR
Sbjct: 125 AMLGTIGY-----GKLDALEPASHTTPDPLRVQQYLARFRDAGIETVAMEVSSHALAQGR 179
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ V++ I VFTNL+RDH+D+H E+Y AKA LF+R + V+NIDD + +
Sbjct: 180 VAAVEYHIGVFTNLSRDHLDYHRDMEDYFLAKASLFARPLP----VAVINIDDAHGRRLL 235
Query: 122 AQG--NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI----------LEISS 169
+ +P V+ + +N HP + L+L + +V +P GI + I S
Sbjct: 236 DENRVHPKTRVIAVSSQNH---AHP-RAALTL-RARDIVLSPDGIAYTLETEAEQVAIQS 290
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHT 229
GLL R N+ N+L A +A+G P I + + VPGR E I I+DYAHT
Sbjct: 291 GLLARFNVDNLLNTAACLLALGTPFAAIPAKLAALHGVPGRAERIGLGNGAAAIIDYAHT 350
Query: 230 PDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDP 289
P AL+ +L VR P ++ V GC G+ DRGKRPLM + A +D ++T DNP E+P
Sbjct: 351 PAALANILQGVRAHVPGKLWCVFGCGGDRDRGKRPLMAQAAEQYADAVVITDDNPRTENP 410
Query: 290 LDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVV 349
DI+ D L G+G + ++K R A+R + E GD VV
Sbjct: 411 ADIIADSLRGMGHREKAWIKRP-------------------REEAIRFVLPQLEAGDAVV 451
Query: 350 VAGKGHETYQIEGDKKEFFDDREESREALQ 379
+AGKGHE YQI G K + D+E R LQ
Sbjct: 452 IAGKGHEDYQILGTTKHHYSDQETVRTWLQ 481
>gi|315647855|ref|ZP_07900956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
V453]
gi|315276501|gb|EFU39844.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
V453]
Length = 502
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 209/381 (54%), Gaps = 22/381 (5%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I GD+ ++ TTPD + +Q M+ +G V+E SSHGL +GR
Sbjct: 132 KTGIIGTLYMKI-GDHVEKTLNTTPDTIQLQRYFHAMVAHGGTYGVLEVSSHGLDMGRVR 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPER--HRKVVNIDDPNATSFI 121
DF VFTNL+ DH+DFH E YRN K LF+++ + +R +KVV D A+S+
Sbjct: 191 GCDFQTVVFTNLSHDHLDFHQNMESYRNTKELLFTQLGNSDRDMQKKVVLNADDAASSYY 250
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ +VT+ + N ADV L + + + +V TP G + + + G HN+YN L
Sbjct: 251 GK-RTSAQIVTYGIHNP-ADVRALHIQNTGDGCRFIVETPWGSSDFTMKVYGVHNVYNAL 308
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA+ + G P+++I +++ V GR + I +++F V+VDYAH PD L L S +
Sbjct: 309 AAITTCLLEGIPIQEIRNSLQDFAGVHGRFQEIKTDRSFRVVVDYAHNPDGLKATLLSAK 368
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
E+ ++I V+GC GE DR KRP+M IA SD + T+DNP +EDP I+ +ML G
Sbjct: 369 EITSGKMICVMGCRGERDRLKRPIMADIAASYSDYVLFTTDNPFSEDPEQIIAEMLGG-- 426
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
L + +PN R+ A++ AV M + D +++ G+GHET +
Sbjct: 427 ------LSSHHAVNWEVVPN---------RKDAIQRAVEMAGDQDRIIITGRGHETRYVA 471
Query: 362 GDKKEFFDDREESREALQYVD 382
G + + F D E +LQ ++
Sbjct: 472 GSQVDSFSDEEVVLSSLQVME 492
>gi|260550825|ref|ZP_05825032.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624]
gi|424057790|ref|ZP_17795307.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter
nosocomialis Ab22222]
gi|260406135|gb|EEW99620.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624]
gi|407439820|gb|EKF46341.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter
nosocomialis Ab22222]
Length = 499
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 137/361 (37%), Positives = 200/361 (55%), Gaps = 29/361 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QN + +G +EASSHGL GR + D +IAV++NL+RDH+D+
Sbjct: 149 STHTTLDALQLQNELHAYAKHGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMENKK 139
HGT E Y AKA+LF V+N+DD +A I A+ NP P ++T+++
Sbjct: 209 HGTLEAYAEAKARLFKF---NSLKVAVINLDDAHADLMIKSAKNNPAQPKILTYSLTQNT 265
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
AD + SL + G + S LLG N+ N++AA+ G L+ +V
Sbjct: 266 ADYYITDLSYSLAGATFNLVGQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQALVN 325
Query: 200 GIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258
+ ++ PGR ++I D+E+ F +VDYAHTPDAL ++L +++ ++ V GC G+
Sbjct: 326 FVPKLIGAPGRMQVIRDDERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDR 383
Query: 259 DRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPP 318
DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 384 DRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS--------------- 428
Query: 319 LPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E R A
Sbjct: 429 ---GHRMHEIHD-RREAIKFVTQQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVEVRSA 484
Query: 378 L 378
+
Sbjct: 485 I 485
>gi|326791419|ref|YP_004309240.1| UDP-N-acetylmuramyl tripeptide synthetase [Clostridium lentocellum
DSM 5427]
gi|326542183|gb|ADZ84042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
DSM 5427]
Length = 483
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 200/376 (53%), Gaps = 27/376 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I G L++ RTTP+++ +Q L KM+ + + +ME SSH LAL R +
Sbjct: 131 KIGIIGTIENRI-GSQILKAERTTPESLDLQALFKKMVESQVDTTLMEVSSHALALSRVA 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
DF + +FTNLT+DH+DFH T E Y AKAKLF+ +VN D I
Sbjct: 190 GSDFKVGIFTNLTQDHLDFHQTMENYAAAKAKLFTMC-----ETGIVNKDSDYINEIIKG 244
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
++ VT+A++ K AD ++ + + G ++ + G+ +YN LA
Sbjct: 245 ATCNL--VTYAID-KDADYKATNVIITAAGVEYTLVCDQGTFKVDVPIPGKFTVYNTLAV 301
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+A A+ P+ I+ ++ VPGR + + + V+VDYAHTPD L +L +++E
Sbjct: 302 IAAARALEIPMTHILATLKIAKGVPGRVQAFKSIKGYSVLVDYAHTPDGLENVLSTIKEF 361
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
A IITV GC G+ D+ KRP+M KIA SD +TSDNP EDPL ILD++ GV
Sbjct: 362 AQGHIITVFGCGGDRDKTKRPIMGKIAATYSDHVFITSDNPRTEDPLLILDEVEVGVKAI 421
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
Y+K + R+ A+ A++ + D+V++AGKGHE YQI D
Sbjct: 422 TDNYVKVED------------------RKAAIEMALSEAKAEDVVLIAGKGHENYQILKD 463
Query: 364 KKEFFDDREESREALQ 379
+ FDD E LQ
Sbjct: 464 RIIHFDDSEIVNAYLQ 479
>gi|150009090|ref|YP_001303833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Parabacteroides distasonis ATCC 8503]
gi|166224782|sp|A6LEU7.1|MURE_PARD8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|149937514|gb|ABR44211.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Parabacteroides distasonis
ATCC 8503]
Length = 486
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 142/378 (37%), Positives = 203/378 (53%), Gaps = 29/378 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI G+ + + TTPD + + +LMA+M+ G E ME SSH +
Sbjct: 129 MGHKVGLLSTVCNYIDGE-AVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVSSHSIDQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + FD +FTNLTRDH+D+H T E Y AK K F + P + N DD +
Sbjct: 188 RISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PAGTFALTNADDKSG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +T+++ AD E T +++N E+ +GR N YN+
Sbjct: 244 VMLQNTKAKKLTYSLRT-LADFKGKILESHFEGTDLIINGR----EVMVHFVGRFNAYNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +++G E+++ + + +V GR E I + IVDYAHTPDAL+ +L+ +
Sbjct: 299 LAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALTNVLNGI 358
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ RIITVVG G D+GKRPLM K A SD ILTSDNP E+P DI++DM+A
Sbjct: 359 HEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVILTSDNPRFEEPDDIINDMVA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ E R R A++ A + ++GD+++VAGKGHE Y
Sbjct: 419 GLTKMDME-----------------RTLCITDRTQAIKTATMLAKKGDVILVAGKGHEDY 461
Query: 359 QIEGDKKEFFDDREESRE 376
Q K+ FDDRE+ RE
Sbjct: 462 QEIKGVKQHFDDREKLRE 479
>gi|149184156|ref|ZP_01862479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. SG-1]
gi|148848134|gb|EDL62461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. SG-1]
Length = 299
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/318 (40%), Positives = 188/318 (59%), Gaps = 27/318 (8%)
Query: 66 DFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNATSFI 121
DFDIAVFTN+T+DH+D+H T EEYR+AK+ LFS++ + +K ++N DDP+A FI
Sbjct: 2 DFDIAVFTNITQDHLDYHRTMEEYRSAKSLLFSQLGNSYDEKKLKYAIINNDDPSAGFFI 61
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ VVT+ + ++ AD + EL + + TP +++ L GR NIYN+L
Sbjct: 62 H--STAAHVVTYGV-SQDADFYAEDIELRHNGSSFTMVTPSERIKMDIQLAGRFNIYNVL 118
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA A G PL++I ++ ++ V GR E ++ Q F VIVDYAHTPD+L +L ++
Sbjct: 119 AAAASANISGVPLKNIKAALQSINGVSGRFEQVEAGQDFSVIVDYAHTPDSLENVLKTIE 178
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
+ +I VVGC G DR KRP+M +IA D + TSDNP NEDP I+ DM G+
Sbjct: 179 TITDENVIVVVGCGGNRDRTKRPIMAEIACKYGDQVVFTSDNPRNEDPNAIIADMTTGLK 238
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
T + + + D R+ A+ AV++ +GD+V++AGKGHETYQI
Sbjct: 239 HT-------------------NYIVIID-RQEAINHAVSLAGKGDVVLIAGKGHETYQII 278
Query: 362 GDKKEFFDDREESREALQ 379
GD FDDRE ++ A++
Sbjct: 279 GDAVTSFDDREAAKAAIK 296
>gi|425459969|ref|ZP_18839455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9808]
gi|389827486|emb|CCI21238.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9808]
Length = 496
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 146/357 (40%), Positives = 203/357 (56%), Gaps = 28/357 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +AK + G E VME SSH LA GR F + VFTNLTRDH+D+H
Sbjct: 159 TTPFANELQASLAKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKAKLFS D + + ++N+DD A +P V+T+++ + AD +
Sbjct: 219 MEDYFAAKAKLFSP--DYLQGKAIINLDDAYGQRLAASLSPQ-QVLTYSVSDASADFYTK 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
Q ++ TP G + +S L+G++N+ N+LAAVA + G LE ++ I +
Sbjct: 276 DLHYQPTGVQGVMVTPQGEIAFASPLVGQYNLANLLAAVAAVLECGVDLETVIGQIPQFS 335
Query: 206 AVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q VIVDYAHTPD+L +L + R R+I V GC G+ DR KR
Sbjct: 336 GVPGRMERVSIAPDQDISVIVDYAHTPDSLENVLKATRPFISGRMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM KIA + +D+ I+TSDNP E P IL+D++AG+ PP
Sbjct: 396 PLMGKIAAELADLAIVTSDNPRTEAPERILEDIIAGI----------------PP----- 434
Query: 324 RLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + I R +A+ A+ + GD V++AGKGHE YQI G +K FDDRE++R AL
Sbjct: 435 EITVQVISDRALAIDTAIQTAQPGDGVIIAGKGHEDYQILGTEKIHFDDREQARAAL 491
>gi|423334583|ref|ZP_17312362.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides distasonis CL03T12C09]
gi|409225774|gb|EKN18692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides distasonis CL03T12C09]
Length = 486
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 142/378 (37%), Positives = 203/378 (53%), Gaps = 29/378 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI G+ + + TTPD + + +LMA+M+ G E ME SSH +
Sbjct: 129 MGHKVGLLSTVCNYIDGE-AVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVSSHSIDQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + FD +FTNLTRDH+D+H T E Y AK K F + P + N DD +
Sbjct: 188 RISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PAGTFALTNADDKSG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +T+++ AD E T +++N E+ +GR N YN+
Sbjct: 244 VMLQNTKAKKLTYSLRT-LADFKGKILESHFEGTDLIINGR----EVMVHFVGRFNAYNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +++G E+++ + + +V GR E I + IVDYAHTPDAL+ +L+ +
Sbjct: 299 LAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALTNVLNGI 358
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ RIITVVG G D+GKRPLM K A SD ILTSDNP E+P DI++DM+A
Sbjct: 359 HEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVILTSDNPRFEEPDDIINDMVA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ E R R A++ A + ++GD+++VAGKGHE Y
Sbjct: 419 GLTKMDME-----------------RTLCITDRTQAIKTATMLAKKGDVILVAGKGHEDY 461
Query: 359 QIEGDKKEFFDDREESRE 376
Q K+ FDDRE+ RE
Sbjct: 462 QEIKGVKQHFDDREKLRE 479
>gi|254424802|ref|ZP_05038520.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus
sp. PCC 7335]
gi|196192291|gb|EDX87255.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus
sp. PCC 7335]
Length = 534
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 205/398 (51%), Gaps = 44/398 (11%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+T +L ++ G K+ + TTP ++ +Q +A + VVME SSH LA R
Sbjct: 153 KTAILGTLYTRWPGYEKI-AVHTTPFSIDLQAELASAHQAECQTVVMEVSSHALAQHRTW 211
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
+ F++AVFTNLT+DH+D+H ++Y AKA LFS D + +VN DP I +
Sbjct: 212 SIPFEVAVFTNLTQDHLDYHKDLDDYFEAKALLFSP--DYLKGHAIVNQKDPYGQKLIER 269
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
+T+ + ++ AD++ S ++TP G SS L+G+ N+ N+LAA
Sbjct: 270 IGKH-KTLTYDITDRSADLYTSDLRYSPIGVSGTIHTPAGNASFSSPLVGQFNLENLLAA 328
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELID----------------------EEQAFG 221
V + +G L+ IV + E VPGR E + EQ
Sbjct: 329 VGAALHLGVSLDQIVVALPEFKGVPGRMERVQISTGMAAQAVVELDTVAEPDTVAEQDIS 388
Query: 222 VIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTS 281
VIVDYAHTPD+L L + R R+I V GC G+ DR KRP M +IA ++SD I+TS
Sbjct: 389 VIVDYAHTPDSLENALKAARPFIEGRLICVFGCGGDRDRSKRPKMGRIAYEQSDFVIVTS 448
Query: 282 DNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAM 341
DNP E P IL+D++AG+ + E G+ R A+R A+
Sbjct: 449 DNPRTESPEQILEDVVAGIEGPLDEEQVIGD------------------RAAAIRSAILN 490
Query: 342 GEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+ GD +V+AGKGHE YQI G +K FDDRE +R AL+
Sbjct: 491 AQPGDGIVIAGKGHEDYQILGTEKIHFDDREHARAALE 528
>gi|288929759|ref|ZP_06423602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella sp. oral taxon 317 str. F0108]
gi|288328860|gb|EFC67448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella sp. oral taxon 317 str. F0108]
Length = 481
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 205/381 (53%), Gaps = 35/381 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G R G+LS+V YI D + + TTPD + + L+ +M+ G E V ME SSH +A
Sbjct: 129 FGHRCGLLSTVCNYIE-DEAIPADHTTPDPIALNALLHRMVEAGCEYVFMECSSHAIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F VF+NLTRDH+D+H T E YRNAK F + P++ + N DD N
Sbjct: 188 RIGGLTFAGGVFSNLTRDHLDYHKTFENYRNAKKAFFDML--PKQAFAITNADDKNGMVM 245
Query: 121 IAQGNPDVPVV-TFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ V T +M + KA + FE E +N E+ +G+ N+ N
Sbjct: 246 VQNTRATVKTYSTRSMADFKAKILECHFEGMYLE----INGA----EVGVQFIGKFNVSN 297
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA + +G EDI+ + + +V GR E + + + VIVDYAHTPDAL +L++
Sbjct: 298 LLAVYGTAVMLGKRPEDILLVMSTLHSVNGRLEPLRSPEGYTVIVDYAHTPDALENVLNA 357
Query: 240 VREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ E+ ++ITV G G D+GKRPLM A +SD I+TSDNP EDP I++DML
Sbjct: 358 IHEVLNGKGKVITVCGAGGNRDKGKRPLMAVEAVKQSDRVIITSDNPRFEDPQAIINDML 417
Query: 298 AGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG+ M++ + + RR A+R A M ++GD+V+VAGKGHE
Sbjct: 418 AGLNAQQMKKVVSIVD------------------RREAIRTACMMAQKGDVVLVAGKGHE 459
Query: 357 TYQ-IEGDKKEFFDDREESRE 376
YQ IEG K FDD+E +E
Sbjct: 460 DYQEIEG-VKHHFDDKEVVKE 479
>gi|301310868|ref|ZP_07216797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 20_3]
gi|423339275|ref|ZP_17317016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides distasonis CL09T03C24]
gi|300830931|gb|EFK61572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 20_3]
gi|409231177|gb|EKN24034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides distasonis CL09T03C24]
Length = 486
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 142/378 (37%), Positives = 203/378 (53%), Gaps = 29/378 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI G+ + + TTPD + + +LMA+M+ G E ME SSH +
Sbjct: 129 MGHKVGLLSTVCNYIDGE-AVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVSSHSIDQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + FD +FTNLTRDH+D+H T E Y AK K F + P + N DD +
Sbjct: 188 RISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PAGTFALTNADDKSG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +T+++ AD E T +++N E+ +GR N YN+
Sbjct: 244 VMLQNTKAKKLTYSLRT-LADFKGKILESHFEGTDLIINGR----EVMVHFVGRFNAYNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +++G E+++ + + +V GR E I + IVDYAHTPDAL+ +L+ +
Sbjct: 299 LAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALTNVLNGI 358
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ RIITVVG G D+GKRPLM K A SD ILTSDNP E+P DI++DM+A
Sbjct: 359 HEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLSDQVILTSDNPRFEEPDDIINDMVA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ E R+ R A++ A + ++GD+++VAGKGHE Y
Sbjct: 419 GLTKMDME-----------------RVLCITDRTQAIKTATMLAKKGDVILVAGKGHEDY 461
Query: 359 QIEGDKKEFFDDREESRE 376
Q K FDDRE+ RE
Sbjct: 462 QEIKGVKHHFDDREKLRE 479
>gi|372209961|ref|ZP_09497763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Flavobacteriaceae bacterium S85]
Length = 487
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 135/381 (35%), Positives = 206/381 (54%), Gaps = 29/381 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G +TG+LS+V +H + E+ TTPD+V + +AKM+ G ME SSHG+
Sbjct: 130 LGAKTGLLSTVKIIVH-QAEYEATHTTPDSVTINKYLAKMVKEGVSYCFMEVSSHGIHQA 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R ++F VFTN+T DH+D+H T +EYR+ K F + P+ + N+DD N +F
Sbjct: 189 RTYGLNFKGGVFTNITHDHLDYHKTFKEYRDVKKAFFDDL--PQNAFALTNLDDKNG-AF 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ Q N T+A + AD E SL + +N E+ L+G N N+
Sbjct: 246 MLQ-NTKASQKTYA-QKTLADYRIKIVEKSLMGMLLQINDQ----ELWVKLIGGFNASNL 299
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
A V +G P ++++ + ++ +V GR + + +VDYAHTPDAL +L ++
Sbjct: 300 GAIYGVADQLGVPEQELLVALSQLSSVDGRFQYQVSKTGIVGVVDYAHTPDALKNILSTI 359
Query: 241 RELA--PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+E+ +IITVVGC G+ D KRP M KIA++ S +LTSDNP E+PL IL+DM
Sbjct: 360 KEIVRPTAKIITVVGCGGDRDAAKRPKMAKIASELSHQVVLTSDNPRTENPLQILEDMEV 419
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GV P H++ + R+ A++ A + + D+V+VAGKGHETY
Sbjct: 420 GV-----------------PAEAQHKVLTIEDRKQAIKTACQLASKDDVVLVAGKGHETY 462
Query: 359 QIEGDKKEFFDDREESREALQ 379
Q K+ +F+D+E+ E Q
Sbjct: 463 QEINGKRSYFNDKEQLIETFQ 483
>gi|302344986|ref|YP_003813339.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
ligase [Prevotella melaninogenica ATCC 25845]
gi|302148992|gb|ADK95254.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
ligase [Prevotella melaninogenica ATCC 25845]
Length = 485
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 204/382 (53%), Gaps = 36/382 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI+ D ++ + TTPD + + L+AKM+ G E ME SSH +
Sbjct: 129 FGHKVGLLSTVCNYIN-DEEVPASHTTPDPIELNCLLAKMVEAGCEYAFMECSSHAIHQH 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R ++F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 188 RIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGL--PKTAFAITNADDKNG--M 243
Query: 121 IAQGNPDVPVVTFA---MENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
I N V T++ M + +A + FE E E+ +G+ N+
Sbjct: 244 IMVQNTKATVKTYSIKRMADFRAKILECHFEGMYLEVDG--------KEVGVQFIGKFNV 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA I +G ED++ + + +V GR E I + + +VDYAHTPDAL +L
Sbjct: 296 SNLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPIQSPEGYTAVVDYAHTPDALENVL 355
Query: 238 DSVRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
++ ++ + +ITV G G D+GKRPLM + A +SD ILTSDNP +E+P I+D
Sbjct: 356 SAIHDVLDGKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNPRDEEPQAIID 415
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
DMLAG+ T ++ + L + D R+ A+R A M ++GD+++VAGKG
Sbjct: 416 DMLAGLDTTQRKKV----------------LTITD-RKEAIRTAAMMAQKGDVILVAGKG 458
Query: 355 HETYQIEGDKKEFFDDREESRE 376
HE YQ K FDD E RE
Sbjct: 459 HENYQEINGVKHHFDDHEVIRE 480
>gi|329925761|ref|ZP_08280547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Paenibacillus sp. HGF5]
gi|328939641|gb|EGG35986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Paenibacillus sp. HGF5]
Length = 503
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 212/383 (55%), Gaps = 24/383 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+TG++ ++ I G++ ++ TTPD + + ++ +G E V+E SSHGL +GR
Sbjct: 132 KTGIIGTLYMKI-GNHVEKTLNTTPDTIQLMRYFHTIISHGGEYGVLEVSSHGLDMGRVR 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPER---HRKVVNIDDPNATSF 120
DF VFTNL+ DH+DFH T E YRN K LF+++ + R + V+N DD A+S+
Sbjct: 191 GCDFQTVVFTNLSHDHLDFHQTMESYRNTKELLFAQLGNSNRDMQKKAVLNADDA-ASSY 249
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
A+ ++T+ ++N+ ADV + S TP G +++ + G HNIYN
Sbjct: 250 YAK-RTSAQIITYGIQNQ-ADVRATQIHHSREGCVFHAETPWGSSDVNLKVHGAHNIYNA 307
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA+ + G PLE+I +E+ V GR + I + FGV+VDYAH PD L L S
Sbjct: 308 LAAMTTCLLEGIPLEEIRGSLEQFAGVHGRFQEIQTGRRFGVVVDYAHNPDGLKATLQSA 367
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
+ + ++I V+GC GE DR KRP+M IA SD + T+DNP +EDP I+ +ML G+
Sbjct: 368 KAITSGKMICVMGCRGERDRSKRPIMADIAASYSDYVLFTADNPFSEDPEQIMAEMLGGL 427
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
T +E +G+ + D R+ A++ AV M + D +++ G+GHET +
Sbjct: 428 --TSRE--------------SGNWEVVLD-RKEAIQRAVEMAGDEDRIIITGRGHETRYV 470
Query: 361 EGDKKEFFDDREESREALQYVDE 383
G + E F D + +LQ + +
Sbjct: 471 AGSRIESFSDEDIVMSSLQGIGQ 493
>gi|288801602|ref|ZP_06407044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella melaninogenica D18]
gi|288335644|gb|EFC74077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella melaninogenica D18]
Length = 485
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 204/382 (53%), Gaps = 36/382 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI+ D ++ + TTPD + + L+AKM+ G E ME SSH +
Sbjct: 129 FGHKVGLLSTVCNYIN-DEEVPASHTTPDPIELNCLLAKMVEAGCEYAFMECSSHAIHQH 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R ++F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 188 RIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGL--PKTAFAITNADDKNG--M 243
Query: 121 IAQGNPDVPVVTFA---MENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
I N V T++ M + +A + FE E E+ +G+ N+
Sbjct: 244 IMVQNTKATVKTYSIKRMADFRAKILECHFEGMYLEVDG--------KEVGVQFIGKFNV 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA I +G ED++ + + +V GR E I + + +VDYAHTPDAL +L
Sbjct: 296 SNLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPIQSPEGYTAVVDYAHTPDALENVL 355
Query: 238 DSVRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
++ ++ + +ITV G G D+GKRPLM + A +SD ILTSDNP +E+P I+D
Sbjct: 356 SAIHDVLDGKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNPRDEEPQAIID 415
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
DMLAG+ T ++ + L + D R+ A+R A M ++GD+++VAGKG
Sbjct: 416 DMLAGLDATQRKKV----------------LTITD-RKEAIRTAAMMAQKGDVILVAGKG 458
Query: 355 HETYQIEGDKKEFFDDREESRE 376
HE YQ K FDD E RE
Sbjct: 459 HENYQEINGVKHHFDDHEVIRE 480
>gi|390438269|ref|ZP_10226753.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis sp. T1-4]
gi|389838335|emb|CCI30877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis sp. T1-4]
Length = 496
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 149/384 (38%), Positives = 213/384 (55%), Gaps = 29/384 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ T + ++ G + + TTP A +Q +AK + G E VME SSH LA GR
Sbjct: 136 GIATALFGTLYTRWQGFQETAN-HTTPFANELQASLAKAVSAGNEIAVMEVSSHALAQGR 194
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
F + VFTNLTRDH+D+H E+Y AKAKLFS D + + ++N+DD
Sbjct: 195 VQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKLFSP--DYLQGKAIINLDDAYGQRLA 252
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
A +P V+T+++ + AD + + ++ TP G + +S L+G++N+ N+L
Sbjct: 253 ASLSPQ-QVLTYSVSDASADFYTKDLHYQPTGVEGVMVTPQGEIAFASPLVGQYNLANLL 311
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDS 239
AAVA + G LE ++ I + VPGR E I +Q VIVDYAHTPD+L +L +
Sbjct: 312 AAVAAVLECGVDLETVIAQIPQFSGVPGRMERVSIAPDQDISVIVDYAHTPDSLENVLKA 371
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
R R+I V GC G+ DR KRPLM KIA + +D+ I+TSDNP E P IL+D++AG
Sbjct: 372 SRPFISGRMICVFGCGGDRDRTKRPLMGKIAAELADLAIVTSDNPRTESPERILEDIIAG 431
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHET 357
+ PP + + I R +A+ A+ + GD V++AGKGHE
Sbjct: 432 I----------------PP-----EITVQVISDRALAIDTAIQAAQPGDGVIIAGKGHED 470
Query: 358 YQIEGDKKEFFDDREESREALQYV 381
YQI G +K FDDRE++R AL V
Sbjct: 471 YQILGTEKIHFDDREQARAALMKV 494
>gi|392531398|ref|ZP_10278535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Carnobacterium maltaromaticum ATCC 35586]
Length = 491
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 142/379 (37%), Positives = 208/379 (54%), Gaps = 27/379 (7%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ I G+ E+ TTPD++ +Q A M ME SSH L GR
Sbjct: 132 TGVIGTMYRRI-GNTTFETKNTTPDSLTLQKTFADMRQKNVTTCAMEVSSHSLVQGRVWG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHR-KVVNIDDPNATSF 120
DFDI VFTNL++DH+++H T EEY +AK+ LFS++ +PE+ + ++N+DDP F
Sbjct: 191 TDFDITVFTNLSQDHLEYHHTMEEYAHAKSLLFSQLGNIYNPEKPKYAILNMDDPVGRDF 250
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ V+T+ +E + AD E++ T+ L+ + L G+ NI N
Sbjct: 251 --RKMTAAEVLTYGIE-EAADFRANSIEITNHGTRFLLEFNGKEYPVHLQLAGKFNILNA 307
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L A+ A G LE I+ +E + V GR EL+ Q F V+VDYAHTPD L +L ++
Sbjct: 308 LGAIGAAYAAGLELETIISSLEGISGVRGRFELVKGPQDFAVVVDYAHTPDGLLNVLTTI 367
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
E + VVGC G+ D+ KRP M +IA D +D I TSDNP EDP +IL D++A +
Sbjct: 368 NEFKTGDVYCVVGCGGDRDKTKRPKMARIAMDYADHVIFTSDNPRTEDPNEILKDVVAEL 427
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
G + + YL L RR A+ AV + D++++AGKGHE YQI
Sbjct: 428 G-SDESYL------------------LEVDRRKAIELAVKKAQANDIILIAGKGHEDYQI 468
Query: 361 EGDKKEFFDDREESREALQ 379
G K FDD EE+++A++
Sbjct: 469 IGTTKHHFDDVEEAKKAIE 487
>gi|325269663|ref|ZP_08136276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella multiformis DSM 16608]
gi|324988031|gb|EGC20001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella multiformis DSM 16608]
Length = 520
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 208/382 (54%), Gaps = 36/382 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G +TG+LS+V YI D ++ + TTPD + + L+++M+ G E ME SSH +
Sbjct: 165 FGYKTGLLSTVCNYID-DKEVPADHTTPDPIELNCLLSRMVDAGCEYAFMECSSHAIHQR 223
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S ++F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N F
Sbjct: 224 RISGLEFAGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGL--PKNAFALTNADDKNGL-F 280
Query: 121 IAQGNPDVPVVTFA---MENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ Q N V T++ M + +A + FE E + E+ +G+ N+
Sbjct: 281 MVQ-NTKAAVKTYSIKRMADFRAKILECHFEGMYLEIEG--------KEVGVQFIGKFNV 331
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA I +G E+I+ + + +V GR E I + F +VDYAHTPDAL+ +L
Sbjct: 332 SNLLAVYGAAILLGRQPEEILVAMSTLKSVNGRLEPIQSPEGFTAVVDYAHTPDALANVL 391
Query: 238 DSVRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
++ ++ + +ITV G G D+GKRPLM + A +SD ILTSDNP +EDP I+D
Sbjct: 392 AAIHDVLDTKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNPRDEDPQAIID 451
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
DML+G+ ++ + L + D R+ A+R A M ++GD+++VAGKG
Sbjct: 452 DMLSGLDAAQRKKV----------------LTIVD-RKEAIRTAAMMAKKGDVILVAGKG 494
Query: 355 HETYQIEGDKKEFFDDREESRE 376
HE YQ K FDD E RE
Sbjct: 495 HENYQEINGVKHHFDDHEVIRE 516
>gi|293376257|ref|ZP_06622500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Turicibacter sanguinis PC909]
gi|325845135|ref|ZP_08168444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Turicibacter sp. HGF1]
gi|292645149|gb|EFF63216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Turicibacter sanguinis PC909]
gi|325488800|gb|EGC91200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Turicibacter sp. HGF1]
Length = 481
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 204/365 (55%), Gaps = 24/365 (6%)
Query: 16 HGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNL 75
+ ++ +E TTP+ + +Q + +M+ G + V +E SSH L L R F +A+FTNL
Sbjct: 133 YANHYIEPKNTTPEPLSLQRIFHEMVEEGVKQVAIEVSSHALELHRVDYCQFKVALFTNL 192
Query: 76 TRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ-GNPDVPVVTFA 134
T +H+DFH T ++Y AK KLF M+ P+ H +VN+DD + + V T+
Sbjct: 193 TPEHLDFHPTMDDYFEAKYKLF-EMLTPDGH-GIVNLDDEYGEKLVNRLKESQTAVYTYG 250
Query: 135 MENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPL 194
+E+ AD ++ F T + P GI E+ + LLGR N+YN L A+A + P+
Sbjct: 251 IESD-ADFKAEDIHMTSFGTSFKLTCPEGIYEVQTPLLGRFNVYNALGAMASAYSASMPM 309
Query: 195 EDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
E I+ I+ + V GR E+I+E Q F VIVDYAHTPD + ++L+ V + + V+GC
Sbjct: 310 EQIIALIKTLSPVDGRMEIINEGQDFTVIVDYAHTPDGVEKVLEFVTGIKQNGVKVVIGC 369
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DR KRP++ K++ D +D I T+D+P +EDP+DIL++M++G+
Sbjct: 370 PGDRDRTKRPVIAKLSVDYADDVIFTTDDPHSEDPVDILNEMVSGIK------------- 416
Query: 315 YYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREES 374
P + + + I A+ A+ ++ D+V++AG+GHE Q DDRE +
Sbjct: 417 -----PMNYEVIVDRIE--AIETAINKAQKNDIVLIAGRGHEQIQYWKSGNIRLDDREVA 469
Query: 375 REALQ 379
+E L+
Sbjct: 470 KEVLR 474
>gi|293610702|ref|ZP_06693002.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024]
gi|292827046|gb|EFF85411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024]
Length = 499
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 138/361 (38%), Positives = 198/361 (54%), Gaps = 29/361 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QN + G +EASSHGL GR + +IAV++NL+RDH+D+
Sbjct: 149 STHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCAIEIAVYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMENKK 139
HGT E Y AKA LF V+N+DD +A I A+ NP P ++T+++
Sbjct: 209 HGTLEAYAEAKALLFRF---SSLKVAVINLDDEHAALMINAAKQNPAQPKILTYSLTQNT 265
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
AD + SL + +P G + S LLG N+ N++AA+ G L+ +V
Sbjct: 266 ADYYITDLSYSLAGATFNLVSPQGSFAVQSPLLGHFNVENLVAALIATEQAGFNLKALVA 325
Query: 200 GIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258
+ E+ PGR ++I D E+ F +VDYAHTPDAL ++L +++ ++ V GC G+
Sbjct: 326 FVPELIGAPGRMQVIRDGERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDR 383
Query: 259 DRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPP 318
DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 384 DRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS--------------- 428
Query: 319 LPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E R A
Sbjct: 429 ---GHRMHEIHD-RREAIKFVAQQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVEVRSA 484
Query: 378 L 378
+
Sbjct: 485 I 485
>gi|425470978|ref|ZP_18849838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9701]
gi|389883246|emb|CCI36356.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9701]
Length = 496
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 204/357 (57%), Gaps = 28/357 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +AK + G E VME SSH LA GR F + VFTNLTRDH+D+H
Sbjct: 159 TTPFANELQASLAKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKAKLFS D + + ++N+DD A +P V+T+++ + AD +
Sbjct: 219 MEDYFAAKAKLFSP--DYLQGKAIINLDDEYGQRLAASLSPQ-QVLTYSVSDASADFYTK 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ + ++ TP G + +S L+G++N+ N+LAAVA + G LE ++ I +
Sbjct: 276 DLQYQPTGVKGVMVTPQGEIAFASPLVGQYNLANLLAAVAAVLECGVELETLISQIPQFS 335
Query: 206 AVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q VIVDYAHTPD+L +L + R R+I V GC G+ DR KR
Sbjct: 336 GVPGRMERVRIAPDQDISVIVDYAHTPDSLENVLKATRPFISGRMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM KIA + +D+ I+TSDNP E P IL+D++AG+ PP
Sbjct: 396 PLMGKIAAELADLAIVTSDNPRTEAPERILEDIIAGI----------------PP----- 434
Query: 324 RLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + I R +A+ A+ + GD V++AGKGHE YQI G +K FDDRE++R AL
Sbjct: 435 EITVQVISDRALAIDTAIQTAQPGDGVIIAGKGHEDYQILGTEKIHFDDREQARAAL 491
>gi|406895058|gb|EKD39720.1| hypothetical protein ACD_75C00310G0001, partial [uncultured
bacterium]
Length = 813
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 145/397 (36%), Positives = 214/397 (53%), Gaps = 26/397 (6%)
Query: 17 GDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNL 75
G K+ R TTP+A+++Q L+ +M+ G E VVME SSH LA R E+ F + FTNL
Sbjct: 115 GTKKIIGTRFTTPEAMLLQQLLREMIDCGVEYVVMEVSSHALAQRRVGELSFAVVAFTNL 174
Query: 76 TRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDD--PNATSFIAQ-----GNPDV 128
TRDH+D+H ++Y AK KLF+ + E R V+ + + P + +++A
Sbjct: 175 TRDHLDYHLDMDDYFRAKTKLFTEYL-VEGGRAVLPVAEARPESPAWLATLHEICAQAGK 233
Query: 129 PVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGI 188
VV++ E + A V + L T +++ TP G S+ L+GR NI NIL VA+
Sbjct: 234 KVVSWG-EGENASVSLVNHTAGLTRTDLVLQTPSGQHRFSTPLVGRFNIDNILTVVAMSC 292
Query: 189 AVGAPLEDIVRGIEEVDAVPGRCELID-----EEQAFGVIVDYAHTPDALSRLLDSVREL 243
A+G + + + PGR E + QA V VDYAHTPDAL ++L + L
Sbjct: 293 ALGIDEAQSCKALAVANGAPGRLERVSLGDDWPVQAPAVFVDYAHTPDALEKVLTTAAAL 352
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
R++I V GC G+ D+GKRP+M +IAT D+ I+T DNP EDP I++ +LAG+
Sbjct: 353 PHRQLIGVFGCGGDRDKGKRPVMGEIATRLCDIAIVTDDNPRTEDPEAIVEQILAGI--- 409
Query: 304 MQEYLKYGENDYY----PPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
Q +Y ++ + P+ G + R+ A+ A+ G D+VV+AGKGHE YQ
Sbjct: 410 -QNRTEYVKDSSWLAGRKPMDRGCTVIRD--RKTAIASAIKSGGPDDIVVIAGKGHEPYQ 466
Query: 360 IEGDKKEFFDDREESREA-LQYVDELHQAGIDTSEFP 395
+ K FFDDR E+ L + D L + + P
Sbjct: 467 LTIQGKRFFDDRMEAGNVLLSWTDTLAAEAVHGTLLP 503
>gi|72383583|ref|YP_292938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prochlorococcus marinus str. NATL2A]
gi|123621501|sp|Q46LZ6.1|MURE_PROMT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|72003433|gb|AAZ59235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prochlorococcus marinus str. NATL2A]
Length = 509
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 202/366 (55%), Gaps = 29/366 (7%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT AV +Q + K + G E ME SSH L+ R + DF+ AVFTNL+RDH+D+
Sbjct: 156 SKYTTTFAVPLQAKLRKAVQAGVEYGAMEVSSHALSQNRVAGCDFNGAVFTNLSRDHLDY 215
Query: 83 HGTEEEYRNAKAKLF-SRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTF---AMENK 138
H + E Y AKA LF S +++ R V+NIDD + N + + +
Sbjct: 216 HDSMESYFEAKASLFRSHLIEDGGPRSVINIDDKWGAKLAKELNKKCWTCSLKENSQTRE 275
Query: 139 KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIV 198
KAD++ ++ + ++TP G+ S L+G N+ N+L AV + + G PL D++
Sbjct: 276 KADLYISNLQIMQDGYKGKLHTPFGVENFISPLIGEFNLMNMLQAVGILVQRGLPLNDLL 335
Query: 199 RGIEEVDAVPGRCELID------EEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVV 252
+ + VPGR +LI+ +E VIVDYAHTPD L L + R L RR+I V
Sbjct: 336 AALNKFPGVPGRMQLINMDGFKVKEGYPLVIVDYAHTPDGLQNALIASRSLTKRRLICVF 395
Query: 253 GCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGE 312
GC G+ D+GKR M ++A +D ++TSDNP EDP++I+ D+ G G T+ +
Sbjct: 396 GCGGDRDKGKRSKMGEVAAKFADYIVVTSDNPRQEDPIEIIKDI--GKGITIDSEIS--- 450
Query: 313 NDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDRE 372
+ R +A++ A+A ++ D+V++AGKGHE YQI D+ +FDDRE
Sbjct: 451 --------------VEPERSIAIQLAIAKAKKNDVVLIAGKGHEDYQILKDQTIYFDDRE 496
Query: 373 ESREAL 378
++R+AL
Sbjct: 497 QARKAL 502
>gi|333901753|ref|YP_004475626.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pseudomonas fulva 12-X]
gi|333117018|gb|AEF23532.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pseudomonas fulva 12-X]
Length = 487
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 203/374 (54%), Gaps = 33/374 (8%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
L G S++ IH TTPD + VQ +A + G A+ ME SSHGL GR
Sbjct: 136 LGNGFYGSLAQGIH---------TTPDPIGVQATLAGLKKQGARAIAMEVSSHGLHQGRV 186
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122
+ +DFD+AVFTNL+RDH+D+HG+ E Y+ AKA LF+ P +V+N+DD
Sbjct: 187 AALDFDVAVFTNLSRDHLDYHGSMEAYQAAKAALFAW---PSLRARVINLDDATGRQLAT 243
Query: 123 QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILA 182
Q D ++ ++++++ A + + + TP G + S LLGR N+ N+LA
Sbjct: 244 Q-ERDSRLIGYSLQDQGAYLFCRDIHFDDQGVRATLVTPRGEGSLRSSLLGRFNLSNLLA 302
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRE 242
V +A+ PL++I++ + + GR + + + A V+VDYAHTPDAL ++L ++R
Sbjct: 303 VVGALVAMDYPLDEILKVLPRLQGPIGRMQRLGGQDAPLVVVDYAHTPDALEQVLGALRP 362
Query: 243 LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGW 302
R++ + GC G+ DRGKRPLM ++ +D ++T DNP E P I DD+ AG G
Sbjct: 363 HVTGRLLCLFGCGGDRDRGKRPLMAEVVERLADAALVTDDNPRTESPEQIFDDIRAGFGK 422
Query: 303 TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ-IE 361
H F+H R A+ + + GD+VV+AGKGHE YQ I+
Sbjct: 423 AE------------------HVRFMHG-RGNAIAQLIGEAQVGDVVVLAGKGHEDYQEID 463
Query: 362 GDKKEFFDDREESR 375
G ++ F D ++ SR
Sbjct: 464 GVRQPFSDLQQASR 477
>gi|42524586|ref|NP_969966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bdellovibrio bacteriovorus HD100]
gi|39576796|emb|CAE78025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bdellovibrio bacteriovorus HD100]
Length = 496
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 141/380 (37%), Positives = 202/380 (53%), Gaps = 24/380 (6%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ +V++++ GD S TTPD V +Q + + G AV ME SSH L R
Sbjct: 134 TGVIGTVNHHL-GDQVWPSEMTTPDPVFLQKRLREFRSAGALAVAMEVSSHALDQRRVDS 192
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
V F+ +FTNLTRDH+D+H T E Y AK +LF+ ++ R I + A F +
Sbjct: 193 VPFNTVIFTNLTRDHLDYHNTMESYLEAKQRLFTDLLWKTHKRPCFAIVN-TADKFGRRL 251
Query: 125 NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAV 184
P V + K +D+ ++ T V TP G E+ + G HN+ N LAA+
Sbjct: 252 RVADPAVLWTYGEKDSDIRYEILKMDFALTHFKVWTPVGEGEVRLPMSGTHNVMNALAAL 311
Query: 185 AVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL---LDSVR 241
G++ G PL + ++ VPGR + + ++ V VDYAHTPDAL + L VR
Sbjct: 312 GAGLSAGLPLNICIEALDRFTGVPGRLQSVPNDKNLSVFVDYAHTPDALENVLMALTKVR 371
Query: 242 E--LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
E + RI T+ GC G+ D+GKRPLM ++A SD ++TSDNP EDP I+ D+LAG
Sbjct: 372 ENLQSQSRIWTIFGCGGDRDKGKRPLMAEMALKYSDEVVITSDNPRTEDPQTIIQDILAG 431
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
VG G N + D R+ A+ + +EGD++++AGKGHE YQ
Sbjct: 432 VG---------GAN-------KAKATTVVD-RKDAITQTLKRAQEGDVILIAGKGHEDYQ 474
Query: 360 IEGDKKEFFDDREESREALQ 379
I G +K F D + + EALQ
Sbjct: 475 IIGTQKFPFSDVKVAEEALQ 494
>gi|429765544|ref|ZP_19297829.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium celatum DSM 1785]
gi|429185995|gb|EKY26958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium celatum DSM 1785]
Length = 483
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 213/374 (56%), Gaps = 35/374 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ YI G K++S TTP+++ +Q L + M+ G E VMEASSH L L R
Sbjct: 132 GKKVGLVGTIANYI-GSKKVKSEMTTPESLELQKLFSDMVEEGCEYCVMEASSHSLELNR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+F++ +FTN+TRDH+DFH T + Y NAK KLF R V+N+DD I
Sbjct: 191 VYGCNFEVGIFTNITRDHIDFHKTFDNYYNAKFKLFER-----SKTCVINVDDNYGYRII 245
Query: 122 AQ-GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
D V T++++ +++D+ +++ L E ++ N + +E L G +NIYN
Sbjct: 246 NDLKGLDKNVTTYSIK-EESDLRA--YDIKLEEQDIIFNVNN--VEYKFVLPGEYNIYNA 300
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTPDALSRLLD 238
L + A+G E I +G+ +V VPGRCE I ++ + +++D+AHTPD L +L+
Sbjct: 301 LGCIGAAKALGIDDESIKKGLLDV-VVPGRCERIGQKYNLPYEIVIDFAHTPDGLKNILE 359
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
++R R+I V G G+ D+ KR + +I T+ +D+ I+TSDNP EDPL IL +++
Sbjct: 360 TLRGFTKNRLIAVYGSGGDRDKVKRAELGRIGTEIADLVIITSDNPRTEDPLAILKEIVF 419
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G E Y + + R A++ A+ M E GD++V+AGKGHETY
Sbjct: 420 GT-----------EKTNYIAIED---------RVEAIKMAMNMAEPGDVIVLAGKGHETY 459
Query: 359 QIEGDKKEFFDDRE 372
QI + K FD+RE
Sbjct: 460 QIMPEGKVHFDERE 473
>gi|260910907|ref|ZP_05917549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
472 str. F0295]
gi|260634964|gb|EEX53012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
472 str. F0295]
Length = 481
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 143/381 (37%), Positives = 205/381 (53%), Gaps = 35/381 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G R G+LS+V YI D + + TTPD + + L+ +M+ G E V ME SSH +A
Sbjct: 129 FGHRCGLLSTVCNYIE-DEAIPADHTTPDPIALNALLHRMVEAGCEYVFMECSSHAIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F VF+NLTRDH+D+H T E YRNAK F + P++ + N DD N
Sbjct: 188 RIGGLTFAGGVFSNLTRDHLDYHKTFENYRNAKKAFFDML--PKQAFAITNADDKNGMVM 245
Query: 121 IAQGNPDVPVV-TFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ V T +M + KA + FE E +N E+ +G+ N+ N
Sbjct: 246 VQNTRAAVKTYSTRSMADFKAKILECHFEGMYLE----INGA----EVGVQFIGKFNVSN 297
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA A + +G EDI+ + + +V GR + + + + IVDYAHTPDAL +L++
Sbjct: 298 LLAVYATAVMLGKRPEDILLVMSTLHSVNGRLQPLSSPEGYTAIVDYAHTPDALENVLNA 357
Query: 240 VREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ E+ ++ITV G G D+GKRPLM A +SD I+TSDNP EDP I++DML
Sbjct: 358 IHEVLNGKGKVITVCGAGGNRDKGKRPLMAVEAVKQSDRVIITSDNPRFEDPQAIINDML 417
Query: 298 AGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG+ M++ + + RR A+R A M ++GD+V+VAGKGHE
Sbjct: 418 AGLNAQQMKKVISIVD------------------RREAIRTACMMAQKGDVVLVAGKGHE 459
Query: 357 TYQ-IEGDKKEFFDDREESRE 376
YQ IEG K FDD+E +E
Sbjct: 460 DYQEIEG-VKHHFDDKEVVKE 479
>gi|262383990|ref|ZP_06077126.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 2_1_33B]
gi|262294888|gb|EEY82820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 2_1_33B]
Length = 486
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 142/378 (37%), Positives = 202/378 (53%), Gaps = 29/378 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI G+ + + TTPD + + +LMA+M+ G E ME SSH +
Sbjct: 129 MGHKVGLLSTVCNYIDGE-AVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVSSHSIDQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + FD +FTNLTRDH+D+H T E Y AK K F + P + N DD +
Sbjct: 188 RISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PAGTFALTNADDKSG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +T+++ AD E T +++N E+ +GR N YN+
Sbjct: 244 VMLQNTKAKKLTYSLRT-LADFKGKILESHFEGTDLIINGR----EVMVHFVGRFNAYNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +++G E+++ + + +V GR E I + IVDYAHTPDAL+ +L+ +
Sbjct: 299 LAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALTNVLNGI 358
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ RIITVVG G D+GKRPLM K A SD ILTSDNP E+P DI++DM+A
Sbjct: 359 HEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLSDQVILTSDNPRFEEPDDIINDMVA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ E R R A++ A + ++GD+++VAGKGHE Y
Sbjct: 419 GLTKMDME-----------------RTLCITDRTQAIKTATMLAKKGDVILVAGKGHEDY 461
Query: 359 QIEGDKKEFFDDREESRE 376
Q K FDDRE+ RE
Sbjct: 462 QEIKGVKHHFDDREKLRE 479
>gi|375136285|ref|YP_004996935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Acinetobacter calcoaceticus PHEA-2]
gi|325123730|gb|ADY83253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Acinetobacter calcoaceticus PHEA-2]
Length = 499
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 137/361 (37%), Positives = 198/361 (54%), Gaps = 29/361 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QN + G +EASSHGL GR + +IAV++NL+RDH+D+
Sbjct: 149 STHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCAIEIAVYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMENKK 139
HGT E Y AKA LF ++N+DD +A I A+ NP P ++T+++
Sbjct: 209 HGTLEAYAEAKALLFRF---SSLKVAIINLDDEHAALMINAAKQNPAQPKILTYSLTQNT 265
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
AD + SL + +P G + S LLG N+ N++AA+ G L+ +V
Sbjct: 266 ADYYITDLSYSLVGATFNLVSPQGSFAVQSPLLGHFNVENLVAALIATEQAGFDLKALVA 325
Query: 200 GIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258
+ E+ PGR ++I D E+ F +VDYAHTPDAL ++L +++ ++ V GC G+
Sbjct: 326 FVPELIGAPGRMQVIRDGERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDR 383
Query: 259 DRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPP 318
DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 384 DRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS--------------- 428
Query: 319 LPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E R A
Sbjct: 429 ---GHRMHEIHD-RREAIKFVAQQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVEVRSA 484
Query: 378 L 378
+
Sbjct: 485 I 485
>gi|402303392|ref|ZP_10822487.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. FOBRC9]
gi|400378636|gb|EJP31488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. FOBRC9]
Length = 495
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 206/385 (53%), Gaps = 27/385 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ + D + TTPD V++Q ++A+M G + VVME SSH L GR
Sbjct: 132 GRRVGLVGTIQVMME-DEVFPTANTTPDVVVMQQMLAEMRARGMDTVVMEVSSHALDQGR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP---ERHRKVVNIDDPNAT 118
+ ++FD AVFTNLT+DH+D+H T E Y AKA+LF + P V+N DD A
Sbjct: 191 VAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAGKTAVINADD--AA 248
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGL--LGRHN 176
+ + + PV+++ + + A ++ L + + + HG E + L G N
Sbjct: 249 GAVMRAHTTCPVLSYGVTQQAA---LTARDVRLAQDGMTMRLVHGDEECALTLHITGEFN 305
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN+LAA A G + I +E VPGR EL+ Q F VIVDYAHTPD + +
Sbjct: 306 VYNVLAAAGAARAEGIGYDVIRAALEGFTGVPGRFELVRAGQDFSVIVDYAHTPDGMENV 365
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L + R + RII V GC G+ DR KRP+M +I + +D+ +TSDNP EDP ILD++
Sbjct: 366 LRTARAVTRGRIIVVFGCGGDRDRTKRPIMGRIGAEMADLVYITSDNPRTEDPAAILDEV 425
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
E+ P L L D RR A+ AV GD VV+ GKGHE
Sbjct: 426 ---------------ESGALPVLGGKPYEKLVD-RRTAIFDAVRAARPGDSVVILGKGHE 469
Query: 357 TYQIEGDKKEFFDDREESREALQYV 381
TYQI + FDDRE + EA++ V
Sbjct: 470 TYQILKEGTIHFDDRETAAEAIRSV 494
>gi|255015711|ref|ZP_05287837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides sp. 2_1_7]
gi|410104831|ref|ZP_11299742.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides sp. D25]
gi|409233406|gb|EKN26243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides sp. D25]
Length = 486
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 142/378 (37%), Positives = 202/378 (53%), Gaps = 29/378 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI G+ + + TTPD + + +LMA+M+ G E ME SSH +
Sbjct: 129 MGHKVGLLSTVCNYIDGE-AVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVSSHSIDQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + FD +FTNLTRDH+D+H T E Y AK K F + P + N DD +
Sbjct: 188 RISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PAGTFALTNADDKSG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +T+++ AD E T +++N E+ +GR N YN+
Sbjct: 244 VMLQNTKAKKLTYSLRT-LADFKGKILESHFEGTDLIINGR----EVMVHFVGRFNAYNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +++G E+++ + + +V GR E I + IVDYAHTPDAL+ +L+ +
Sbjct: 299 LAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALTNVLNGI 358
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ RIITVVG G D+GKRPLM K A SD ILTSDNP E+P DI++DM+A
Sbjct: 359 HEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVILTSDNPRFEEPDDIINDMVA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ E R R A++ A + ++GD+++VAGKGHE Y
Sbjct: 419 GLTKMDME-----------------RTLCITDRTQAIKTATMLAKKGDVILVAGKGHEDY 461
Query: 359 QIEGDKKEFFDDREESRE 376
Q K FDDRE+ RE
Sbjct: 462 QEIKGVKHHFDDREKLRE 479
>gi|393782273|ref|ZP_10370458.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides salyersiae CL02T12C01]
gi|392673544|gb|EIY67003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides salyersiae CL02T12C01]
Length = 483
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 204/387 (52%), Gaps = 41/387 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGRMADEGCKYAFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E+ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELMVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I Q + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVRELAPRR--IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ ++ R +ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHDVLEGRGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG L G+ + + RR A+R A + E+GD+++VAG
Sbjct: 413 INDMLAG--------LDAGDRKKTISMAD---------RREAIRTACMLAEKGDVILVAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHE YQ K FDD+EE + +
Sbjct: 456 KGHENYQEIKGVKHHFDDKEELKSVMN 482
>gi|379010716|ref|YP_005268528.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
MurE [Acetobacterium woodii DSM 1030]
gi|375301505|gb|AFA47639.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
MurE [Acetobacterium woodii DSM 1030]
Length = 495
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 128/379 (33%), Positives = 210/379 (55%), Gaps = 25/379 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I + RTTP+++ VQ ++ +M + ME SSHGLAL R
Sbjct: 131 GKKCGLIGTIQNLIGSEVIDNRGRTTPESLEVQEIIREMKDADCSHLFMEVSSHGLALER 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF- 120
+ VDFD +FTNLT+DH+D+H T E Y AKAKLF D ++N DDP
Sbjct: 191 VNGVDFDYGIFTNLTQDHLDYHKTFENYFKAKAKLF----DQVNKVNIINGDDPWGQKLC 246
Query: 121 -IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
I +VPV+T+ N + D + T + TP G ++ + G +YN
Sbjct: 247 KILAAKTEVPVITYGT-NPQNDYFAKEMIFETRGTTFTLVTPTGEEQLFLNIPGEFMVYN 305
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+AA+ V + G PL I ++++ + GR E++ + F +++DYAH+PD+L +LL S
Sbjct: 306 AMAAIIVALNEGIPLAVIKETLKKIPGIEGRMEILKTDAPFDIVIDYAHSPDSLEKLLQS 365
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
VR++ R++ V GC G+ DR KRP+M +IA +DV ++TSDNP +E+P+DI+D +++G
Sbjct: 366 VRKIFTGRMVLVFGCNGDRDREKRPIMGRIAGTYADVVVVTSDNPASENPMDIIDAVVSG 425
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V +Y ++R V A+ + GD++V+AGKGHE +
Sbjct: 426 VREKTDQYATV------------------EVRSDGVYHGAALCQPGDVLVLAGKGHEKQE 467
Query: 360 IEGDKKEFFDDREESREAL 378
I ++ ++++ + +REA+
Sbjct: 468 IMKNETLYYNEWDTAREAV 486
>gi|298377155|ref|ZP_06987109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 3_1_19]
gi|298266139|gb|EFI07798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 3_1_19]
Length = 486
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 142/378 (37%), Positives = 202/378 (53%), Gaps = 29/378 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI G+ + + TTPD + + +LMA+M+ G E ME SSH +
Sbjct: 129 MGHKVGLLSTVCNYIDGE-AVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVSSHSIDQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + FD +FTNLTRDH+D+H T E Y AK K F + P + N DD +
Sbjct: 188 RISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PAGTFALTNADDKSG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +T+++ AD E T +++N E+ +GR N YN+
Sbjct: 244 VMLQNTKAKKLTYSLRT-LADFKGKILESHFEGTDLIINGR----EVMVHFVGRFNAYNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +++G E+++ + + +V GR E I + IVDYAHTPDAL+ +L+ +
Sbjct: 299 LAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALTNVLNGI 358
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ RIITVVG G D+GKRPLM K A SD ILTSDNP E+P DI++DM+A
Sbjct: 359 HEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVILTSDNPRFEEPDDIINDMVA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ E R R A++ A + ++GD+++VAGKGHE Y
Sbjct: 419 GLTKMDME-----------------RALCITDRTQAIKTATMLAKKGDVILVAGKGHEDY 461
Query: 359 QIEGDKKEFFDDREESRE 376
Q K FDDRE+ RE
Sbjct: 462 QEIKGVKHHFDDREKLRE 479
>gi|256841650|ref|ZP_05547156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Parabacteroides sp. D13]
gi|256736544|gb|EEU49872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Parabacteroides sp. D13]
Length = 486
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 142/378 (37%), Positives = 202/378 (53%), Gaps = 29/378 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI G+ + + TTPD + + +LMA+M+ G E ME SSH +
Sbjct: 129 MGHKVGLLSTVCNYIDGE-AVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVSSHSIDQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + FD +FTNLTRDH+D+H T E Y AK K F + P + N DD +
Sbjct: 188 RISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PAGTFALTNADDKSG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +T+++ AD E T +++N E+ +GR N YN+
Sbjct: 244 VMLQNTKAKKLTYSLRT-LADFKGKILESHFEGTDLIINGR----EVMVHFVGRFNAYNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +++G E+++ + + +V GR E I + IVDYAHTPDAL+ +L+ +
Sbjct: 299 LAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALTNVLNGI 358
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ RIITVVG G D+GKRPLM K A SD ILTSDNP E+P DI++DM+A
Sbjct: 359 HEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLSDQVILTSDNPRFEEPDDIINDMVA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ E R R A++ A + ++GD+++VAGKGHE Y
Sbjct: 419 GLTKMDME-----------------RALCITDRTQAIKTATMLAKKGDVILVAGKGHEDY 461
Query: 359 QIEGDKKEFFDDREESRE 376
Q K FDDRE+ RE
Sbjct: 462 QEIKGVKHHFDDREKLRE 479
>gi|325856502|ref|ZP_08172191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella denticola CRIS 18C-A]
gi|325483471|gb|EGC86444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella denticola CRIS 18C-A]
Length = 484
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 36/382 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI+ D ++ + TTPD + + L+A+M G E ME SSH +
Sbjct: 129 FGYKAGLLSTVCNYIN-DEEVPADHTTPDPIELNYLLARMAAAGCEYAFMECSSHAIHQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N F
Sbjct: 188 RISGLTFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGL--PKNAFALTNADDKNGM-F 244
Query: 121 IAQGNPDVPVVTFA---MENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ Q N V T++ M + +A + FE E E+ +G+ N+
Sbjct: 245 MVQ-NTKASVKTYSIKRMADFRAKILECHFEGMYLEIDG--------KEVGVQFIGKFNV 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA + +G E+I+ + + +V GR E I + F +VDYAHTPDAL+ +L
Sbjct: 296 SNLLAVYGTAVLLGRQPEEILVAMSTLKSVNGRLEPIQSPEGFTAVVDYAHTPDALANVL 355
Query: 238 DSVRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
++ ++ + +ITV G G D+GKRPLM + A +SD ILTSDNP +EDP I+D
Sbjct: 356 AAIHDVLDSKGGHVITVCGAGGHRDKGKRPLMAQEAVRQSDTVILTSDNPRDEDPQAIID 415
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
DMLAG+ T ++ + L + D R+ A+R A M ++GD+++VAGKG
Sbjct: 416 DMLAGLDSTQKKKV----------------LTIVD-RKEAIRTAAMMAKKGDVILVAGKG 458
Query: 355 HETYQIEGDKKEFFDDREESRE 376
HE YQ K FDD E RE
Sbjct: 459 HENYQEINGVKHHFDDHEVIRE 480
>gi|350570229|ref|ZP_08938597.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Neisseria wadsworthii 9715]
gi|349797278|gb|EGZ51045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Neisseria wadsworthii 9715]
Length = 491
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 134/362 (37%), Positives = 198/362 (54%), Gaps = 30/362 (8%)
Query: 22 ESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMD 81
E+ TTPD V VQ L+ + G +AV ME SSHGL R + V F AVFTNLTRDH+D
Sbjct: 152 EATHTTPDPVSVQTLLHRFKQQGAKAVAMEVSSHGLDQFRVNGVPFQTAVFTNLTRDHLD 211
Query: 82 FHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF---IAQGNPDVPVVTFAMENK 138
+HG+ E Y K++LF V+N+DDP + + P + V + +
Sbjct: 212 YHGSMESYGEIKSRLFYWQ---GLQHAVINVDDPFGAALAGRLKTERPKLNVYGYGFA-E 267
Query: 139 KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIV 198
+AD+ +F S V ++TP G E+ + LLGR N N+ + V V + G PL++++
Sbjct: 268 QADIRITRFTASSDGMTVQLDTPWGSGEVKTRLLGRFNAQNLASCVGVLWSAGYPLDEVL 327
Query: 199 RGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPR--RIITVVGCAG 256
R + ++ GR + I V+VDYAHTPDAL + L +++E+ P+ + V GC G
Sbjct: 328 RVLAQIRPATGRMDCIMNPGKPLVVVDYAHTPDALEKALATLQEIKPQGANLWCVFGCGG 387
Query: 257 ESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYY 316
D+GKRPLM A +D ++TSDNP E+P DI++D+L V Y ++ E D
Sbjct: 388 NRDKGKRPLMGAAAVAGADKVVVTSDNPRMEEPADIINDILPAV-----PYPEHVETD-- 440
Query: 317 PPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESRE 376
RR A+ AV D++++AGKGHETYQ +K +F D +E+++
Sbjct: 441 --------------RRSAIEYAVKHAAANDIILIAGKGHETYQDVQGQKHYFSDFDEAQK 486
Query: 377 AL 378
AL
Sbjct: 487 AL 488
>gi|317059835|ref|ZP_07924320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. 3_1_5R]
gi|313685511|gb|EFS22346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. 3_1_5R]
Length = 479
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 138/385 (35%), Positives = 208/385 (54%), Gaps = 45/385 (11%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ ++ Y I G +E+P TTP+++ + ++ K G E ++ME SSH L LGR +
Sbjct: 127 KVARFGTIEYKI-GKEVIEAPNTTPESLDLVRMIKKAYDQGLEYIIMEVSSHALELGRVN 185
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF--- 120
++FD A+FTNLT DH+D+H T E+Y AK KLF ++ + KV+N+DD
Sbjct: 186 MLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRG--KAIKVLNVDDEYGRRLQEE 243
Query: 121 ---IAQGNPDVPVV--TFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
I+ G V E K V ELSLF + E +LG
Sbjct: 244 FHGISYGTKQAEVQGKILGFEGGKEKV-----ELSLFGKKK---------ECKIQILGGF 289
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN+L ++A+ +G E+I +E + PGR E +D Q + V++DYAHT DAL
Sbjct: 290 NLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDCGQDYMVVIDYAHTGDALEN 349
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +++E+ ++IIT+ GC G+ D KRP+M +IA SD +LTSDNP E+P IL++
Sbjct: 350 ILQAIQEIKTKKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILEE 409
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ G+T + ++ E R A+ + E+GD+V++AGKGH
Sbjct: 410 VKG--GFTKENHICVLE------------------RAEAIAEGIRRAEKGDIVLIAGKGH 449
Query: 356 ETYQIEGDKKEFFDDREESREALQY 380
ETYQI G KK FDDRE +R + +
Sbjct: 450 ETYQILGRKKYHFDDREFARREIVF 474
>gi|365845634|ref|ZP_09386394.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Flavonifractor plautii ATCC
29863]
gi|364559647|gb|EHM37618.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Flavonifractor plautii ATCC
29863]
Length = 478
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 201/371 (54%), Gaps = 28/371 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ + I G+ L + RTTP++ VQ L+ +M G VVMEASSH L L R
Sbjct: 129 KVGLIGTNQNLI-GEESLPAHRTTPESYEVQELLREMADAGCTHVVMEASSHALVLHRLD 187
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
+ F +FTNLT+DH+DFHGT E YR+AK LF + V+N+DD A + A+
Sbjct: 188 GIPFRAGIFTNLTQDHLDFHGTMEAYRDAKGLLFRQCA-----AAVLNLDD-EAGRYYAE 241
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
P +P T++ +AD+ L + T I + + G IYN L
Sbjct: 242 TVP-IPTFTYSECRDEADLTAKNLRLFPQRVEFEAVTRDAISRVRLPIPGGFTIYNALGV 300
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+A G+ +G PL+ + V GR E++ + V++DYAHTPDAL +L +VR+
Sbjct: 301 LACGLVLGLPLDGCAAALGAARGVKGRIEVVPTPTDYTVLIDYAHTPDALENILTTVRDF 360
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
P R+I + GC G+ DR KRP M +A +DV ++TSDNP E P+DI++D+L G+
Sbjct: 361 TPGRVICLFGCGGDRDRTKRPRMGAVAGALADVAVVTSDNPRTEVPMDIINDILPGLEGA 420
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
E + E D RR A+R A+++ GD VV+AGKGHETYQ E D
Sbjct: 421 PAEVVV--EPD----------------RRAAIRRALSLARAGDTVVLAGKGHETYQ-EVD 461
Query: 364 KKEF-FDDREE 373
E+ D+REE
Sbjct: 462 GVEYHLDEREE 472
>gi|310779338|ref|YP_003967671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Ilyobacter polytropus DSM 2926]
gi|309748661|gb|ADO83323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Ilyobacter polytropus DSM 2926]
Length = 478
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 205/385 (53%), Gaps = 45/385 (11%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ + +V Y + G+ + +P TTP+++ + + K + G + ++ME SSH L +GR
Sbjct: 127 KVSRIGTVEYKV-GNEIIPAPNTTPESLDLIKICRKSVDRGIKYLIMEVSSHALEMGRVE 185
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
+DFD+ FTNLT +H+D+H EEY +AK KLF + + E V N DD +
Sbjct: 186 MIDFDVTAFTNLTPEHLDYHKDMEEYFSAKRKLFYKTKNKEN--TVFNTDDFYGKRLFDE 243
Query: 124 GNPDVPVVTFAME----NKKADVHPLK---FELSLFETQVLVNTPHGILEISSGLLGRHN 176
+++ +E N H LK ELS E Q +N L G+ N
Sbjct: 244 FGG----ISYGIESGDLNASMISHSLKTQEIELSFKEFQKKINIK---------LQGKFN 290
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN+L AV V I +G LE+I +E++++ PGR E I+ Q F V+VDYAHT DAL +
Sbjct: 291 VYNLLTAVGVAIRLGLSLEEITDRLEKLESAPGRFECIEAGQNFMVVVDYAHTADALENI 350
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L ++ E+ +IITV GC G+ D KR M + A SD+ I+TSDNP EDP+ ILD++
Sbjct: 351 LSALNEIKIEKIITVFGCGGDRDLSKRKPMAETAEKLSDIVIVTSDNPRTEDPVKILDEV 410
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
G+ L+ R A+ AV M ++ D+V++AGKGHE
Sbjct: 411 SKGLSSLKDSLLEID-------------------REKAIEKAVGMAKKNDIVLIAGKGHE 451
Query: 357 TYQIEGDKKEFFDDREESREALQYV 381
YQI G K FDD+E AL+Y+
Sbjct: 452 DYQIIGKDKIHFDDKE---VALKYI 473
>gi|366051952|ref|ZP_09449674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
[Lactobacillus suebicus KCTC 3549]
Length = 493
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 202/384 (52%), Gaps = 45/384 (11%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD KL + TTPD VQ L+ +M ME SS L GR
Sbjct: 131 GSKTGIIGTM-YNKIGDKKLPTINTTPDPHTVQKLLRQMDDEDVMECAMEVSSIALVQGR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK-----VVNIDDPN 116
+DFD AVFTNLT DH+DFH T E Y +AKA LFS++ + V+NIDDP
Sbjct: 190 AWGIDFDTAVFTNLTEDHLDFHKTVENYFDAKALLFSQLGNSYHKTSKPKTAVINIDDPY 249
Query: 117 ATSFIAQGNPDVPVVTFAM--------ENKKADVHPLKFELSLFETQVLVNTPHGILEIS 168
I + +V +T+ +N + H KF+LS++ + V+
Sbjct: 250 GRRLIDKTAANV--LTYGTHGQGLLQAKNIQVTSHGTKFDLSIYGHEYPVHLK------- 300
Query: 169 SGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAH 228
L+G N+YN L+A G E+I++ +E V+ V GR +++ +Q VIVDYAH
Sbjct: 301 --LMGDFNVYNALSAFGATYEHGLEPEEIIKSLESVEGVRGRFQVVPNDQDVTVIVDYAH 358
Query: 229 TPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
TPD L +L+++ A +R+ VVGC G+ + KRP+M IA + S I TSDNP ED
Sbjct: 359 TPDGLKNVLNTINAFAEKRVFCVVGCGGDRETEKRPIMADIALNNSTDAIFTSDNPRTED 418
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P ILD+M+A V D Y + RR A+ A++ + GD+V
Sbjct: 419 PEAILDEMVAKV-----------PKDSYTRNSD---------RREAIYYALSKAQAGDVV 458
Query: 349 VVAGKGHETYQIEGDKKEFFDDRE 372
++AGKGHE YQI G K FDD E
Sbjct: 459 LIAGKGHEDYQIIGTTKHHFDDVE 482
>gi|312130989|ref|YP_003998329.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
[Leadbetterella byssophila DSM 17132]
gi|311907535|gb|ADQ17976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Leadbetterella byssophila DSM 17132]
Length = 485
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 143/381 (37%), Positives = 206/381 (54%), Gaps = 31/381 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G++S+V I D + + TTPD++ + L+ +M G V ME SSH + G
Sbjct: 129 LGYKCGLISTVQNQIE-DEIIPATHTTPDSITLNALLHEMHQKGCAFVFMEVSSHSVVQG 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTN+T+DH+DFH T +EY AK F + P + N+DD N
Sbjct: 188 RISGLHFSGGIFTNITQDHLDFHKTFDEYIKAKKGFFDAL--PSTAFALTNVDDRNGKVM 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +++++N AD + LF Q+ ++ E+ L+G+ N YN+
Sbjct: 246 LQ--NTKAEKHSYSLKNI-ADFKGKVLDCGLFGLQMEIDKQ----EVWFKLIGQFNAYNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE-LIDEEQAFGVIVDYAHTPDALSRLLDS 239
LA + + E+I+ + ++ PGR E +I +Q G IVDYAHTPDAL +L++
Sbjct: 299 LAVYGAAVLLEENPENILTELSQLTPPPGRFEQVISSQQTVG-IVDYAHTPDALKNVLET 357
Query: 240 VREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ L R+ITVVGC G D+GKRPLM IA + SD ILTSDNP E+P DIL DM
Sbjct: 358 INGLRQGHERVITVVGCGGNRDKGKRPLMAGIACELSDTVILTSDNPRFEEPEDILKDME 417
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AG+ P+ R+ + RR A+R AVA+ D+++VAGKGHET
Sbjct: 418 AGI-----------------PITKQKRVQVIVDRREAIRQAVALAGPEDIILVAGKGHET 460
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ K FDDREE + A
Sbjct: 461 YQDVKGVKSHFDDREELKLAF 481
>gi|425464780|ref|ZP_18844090.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9809]
gi|389833121|emb|CCI22648.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9809]
Length = 496
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 202/360 (56%), Gaps = 24/360 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +AK + G E VME SSH LA GR F + VFTNLTRDH+D+H
Sbjct: 159 TTPFANELQASLAKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKAKLFS D + + ++N+DD A +P V+T+++ + AD +
Sbjct: 219 MEDYFAAKAKLFSP--DYLQGKAIINLDDVYGQRLAASLSPQ-QVLTYSVSDASADFYTK 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
Q ++ TP G + +S L+G++N+ N+LAAVA + G L ++ I +
Sbjct: 276 DLHYQPTGVQGVMVTPQGEIAFASPLVGQYNLANLLAAVAAVLECGVDLGKVISQIPQFS 335
Query: 206 AVPGRCELIDE--EQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E + +Q VIVDYAHTPD+L +L + R R+I V GC G+ DR KR
Sbjct: 336 GVPGRMERVSTAPDQDISVIVDYAHTPDSLENVLKASRPFISGRMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM KIA + +D+ I+TSDNP E P IL D++AG+ P+
Sbjct: 396 PLMGKIAAELADLAIVTSDNPRTESPERILQDIVAGI-------------------PSEI 436
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDE 383
+ + R +A+ A+ + GD V++AGKGHE YQI G +K FDDRE++R AL V +
Sbjct: 437 TVQVISDRALAIDTAIQAAQPGDGVIIAGKGHEDYQILGTEKIHFDDREQARAALMKVKK 496
>gi|282880608|ref|ZP_06289314.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella timonensis CRIS 5C-B1]
gi|281305503|gb|EFA97557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella timonensis CRIS 5C-B1]
Length = 483
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 200/377 (53%), Gaps = 36/377 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G R G+LS+V YI D ++ + TTPD + + L+AKM+ E V ME SSH +A
Sbjct: 129 LGHRCGLLSTVCNYIE-DEQIPADHTTPDPIELNELLAKMVEQHCEYVFMECSSHAIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R ++F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 188 RIGGLNFTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDHL--PKSAFAITNADDKNGMVM 245
Query: 121 IAQGNPDVPVVTFAMENK---KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ N V T+++ KA + F+ E E+ +G+ N+
Sbjct: 246 VQ--NTKATVKTYSVRTAADFKARIIECHFQGMYLEIDG--------QEVGVQFIGKFNV 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA A +G E+I+ + + +V GR + + Q F +VDYAHTPDAL +L
Sbjct: 296 SNLLAVYATARMLGKQREEILIAMSTLHSVNGRMDTLHSPQGFTAVVDYAHTPDALKNVL 355
Query: 238 DSVRELAPR-RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
++ E+ + +ITV G G D+GKRPLM K A SD I+TSDNP E+P DI++DM
Sbjct: 356 LAIHEVDGKGHVITVCGAGGNRDKGKRPLMAKQAVQLSDKVIITSDNPRFEEPQDIINDM 415
Query: 297 LAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
LAG+ M++ L + RR A+R A + ++ D+V+VAGKGH
Sbjct: 416 LAGLDAQDMKKVLSIVD------------------RREAIRTACMLADKNDVVLVAGKGH 457
Query: 356 ETYQIEGDKKEFFDDRE 372
ETYQ K FDD+E
Sbjct: 458 ETYQEVKGVKHHFDDKE 474
>gi|294056591|ref|YP_003550249.1| UDP-N-acetylmuramyl tripeptide synthetase [Coraliomargarita
akajimensis DSM 45221]
gi|293615924|gb|ADE56079.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita
akajimensis DSM 45221]
Length = 533
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 142/376 (37%), Positives = 201/376 (53%), Gaps = 20/376 (5%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ Y I G L S RTTP++V V L+++M G + VME SSHG+ R
Sbjct: 169 KVGLIGTIRYDI-GPRTLPSFRTTPESVDVYALLSQMEDGGCKDAVMEVSSHGVDQKRVY 227
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
+D D+AVF NLT+DH+D+H + E Y AK LF H VVN+D + +
Sbjct: 228 GLDIDVAVFLNLTQDHIDYHKSMEAYYEAKKGLFIGRAGAVPHSAVVNMDCAYGRRLLTE 287
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
DV +TF E+ A V K L T+ + P G + S LLGR+N+ N+LAA
Sbjct: 288 LPGDVRALTFG-EHADAQVRAEKVRLLADHTEFELYWPGGQATVVSPLLGRYNVSNLLAA 346
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+A G A G +E +V+ I VPGR ELI E+Q + V+VDYAHT DAL +RE+
Sbjct: 347 LATGWAKGFEIEHLVKRIPSFRGVPGRMELIHEKQPYNVLVDYAHTDDALKNATGMLREI 406
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
P ++I V GC G+ DR KR LM K + +D TSDNP +E I +DM G +
Sbjct: 407 TPGKLIVVFGCGGDRDRSKRSLMLKATLEHADQIFATSDNPRSESVEQIFEDMRLGNETS 466
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
+ F+ D R+ A+ A+ + GD V++AGKGHE++Q
Sbjct: 467 LDRV-----------------EFIED-RKHAISRALDAAQAGDCVLIAGKGHESFQEFDG 508
Query: 364 KKEFFDDREESREALQ 379
FDDR+ +RE +Q
Sbjct: 509 SVVPFDDRQVARELIQ 524
>gi|359461420|ref|ZP_09249983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Acaryochloris sp. CCMEE 5410]
Length = 497
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 205/364 (56%), Gaps = 29/364 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
+++ S TTP AV +Q ++ + + VME SSH LA R F +AVF+NLT+D
Sbjct: 154 HQVTSTHTTPFAVDLQQQLSDAVAAQCQFGVMEVSSHALAQQRVLGCQFTVAVFSNLTQD 213
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENK 138
H+D+H E+Y AKA LFS D + R ++NIDD + Q P+ T+++E
Sbjct: 214 HLDYHQDMEDYFAAKALLFSP--DYLQGRAIINIDDVYGQRLVDQIGPN-QCWTYSIEGP 270
Query: 139 KADVHP--LKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLED 196
AD++ L +E + + Q+ +TP G +E S L+G+ N+ N+LAAV + +G L
Sbjct: 271 -ADLYTSGLSYETAGVKGQL--HTPKGTVEFFSPLVGQFNVSNLLAAVGAALELGLTLTQ 327
Query: 197 IVRGIEEVDAVPGRCELI--DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
I + + VPGR + I +Q VIVDYAHTPD+L LL + R ++ V GC
Sbjct: 328 ITPALAQFPGVPGRMQQITYSADQDISVIVDYAHTPDSLENLLKAARPFVKGQMACVFGC 387
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DR KRPLM +IA SD I+TSDNP EDP IL D+LAG+
Sbjct: 388 GGDRDRTKRPLMGEIAARLSDRAIVTSDNPRTEDPQQILQDVLAGI-------------- 433
Query: 315 YYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREES 374
P + + RRVA++ A+A + GD +++AGKGHE YQI G +K FDDREE+
Sbjct: 434 -----PTKVKPIVEVDRRVAIQAAIAQAKPGDTILIAGKGHEDYQILGTEKIHFDDREEA 488
Query: 375 REAL 378
+ AL
Sbjct: 489 QAAL 492
>gi|313895960|ref|ZP_07829514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. oral taxon 137 str. F0430]
gi|312975385|gb|EFR40846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. oral taxon 137 str. F0430]
Length = 495
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 206/385 (53%), Gaps = 27/385 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ + D + TTPD V++Q ++A+M G + VVME SSH L GR
Sbjct: 132 GRRVGLVGTIRVMME-DEVFPTANTTPDVVVMQQMLAEMRARGMDTVVMEVSSHALDQGR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP---ERHRKVVNIDDPNAT 118
+ ++FD AVFTNLT+DH+D+H T E Y AKA+LF + P V+N DD A
Sbjct: 191 VAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAGKTAVINADD--AA 248
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGL--LGRHN 176
+ + + PV+++ + + A ++ L + + + HG E + L G N
Sbjct: 249 GPVMRAHTTCPVLSYGVTQQAALT---ARDIRLAQDGMTMRLVHGDEECALTLHITGEFN 305
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN+LAA A G + I +E VPGR EL+ Q F VIVDYAHTPD + +
Sbjct: 306 VYNVLAAAGAARAEGIGYDVIRAALEGFTGVPGRFELVRAGQDFSVIVDYAHTPDGMENV 365
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L + R + RII V GC G+ DR KRP+M +I + +D+ +TSDNP EDP ILD++
Sbjct: 366 LRTARAVTRGRIIVVFGCGGDRDRTKRPIMGRIGAEMADLVYITSDNPRTEDPAAILDEV 425
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
E+ P L L D RR A+ AV GD VV+ GKGHE
Sbjct: 426 ---------------ESGALPVLGGKPYEKLVD-RRTAIFDAVRAARPGDSVVILGKGHE 469
Query: 357 TYQIEGDKKEFFDDREESREALQYV 381
TYQI + FDDRE + EA++ V
Sbjct: 470 TYQILKEGTIHFDDRETAAEAIRSV 494
>gi|315918171|ref|ZP_07914411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium gonidiaformans ATCC 25563]
gi|313692046|gb|EFS28881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium gonidiaformans ATCC 25563]
Length = 489
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/385 (35%), Positives = 208/385 (54%), Gaps = 45/385 (11%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ ++ Y I G +E+P TTP+++ + ++ K G E ++ME SSH L LGR +
Sbjct: 137 KVARFGTIEYKI-GKEVIEAPNTTPESLDLVRMIKKAYEEGLEYIIMEVSSHALELGRVN 195
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF--- 120
++FD A+FTNLT DH+D+H T E+Y AK KLF ++ + K++N+DD
Sbjct: 196 MLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRG--KAIKILNVDDEYGKRLQEE 253
Query: 121 ---IAQGNPDVPV--VTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
I+ G V E K V ELSLF + E +LG
Sbjct: 254 FHGISYGTKQAGVQGKILGFEGGKERV-----ELSLFGKKK---------ECKIQILGGF 299
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN+L ++A+ +G E+I +E + PGR E +D Q + V++DYAHT DAL
Sbjct: 300 NLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDCGQDYMVVIDYAHTGDALEN 359
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +++E+ ++IIT+ GC G+ D KRP+M +IA SD +LTSDNP E+P IL++
Sbjct: 360 ILQAIQEIKTKKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILEE 419
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ G+T + ++ E R A+ + E+GD+V++AGKGH
Sbjct: 420 VKG--GFTKENHICVLE------------------RAEAIAEGIRRAEKGDIVLIAGKGH 459
Query: 356 ETYQIEGDKKEFFDDREESREALQY 380
ETYQI G KK FDDRE +R + +
Sbjct: 460 ETYQILGRKKYHFDDREFARREIVF 484
>gi|421107468|ref|ZP_15568020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira kirschneri str. H2]
gi|410007484|gb|EKO61194.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira kirschneri str. H2]
Length = 504
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 209/383 (54%), Gaps = 28/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ G++ ++ GD +++ TTPDA + ++ +M G V MEASSHGL LGR
Sbjct: 141 GINCGLIGTIGVKF-GDRAIDTGYTTPDASSLNLILKQMKEEGITTVFMEASSHGLKLGR 199
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF- 120
+ + VFTNLT+DH+DFH E+Y +K +LF + + V++ PN +
Sbjct: 200 MNGISIRAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDFSKSAFAVLDYSAPNGSKLY 259
Query: 121 --IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILE-ISSGLLGRHNI 177
I PD+P+ +KK V+ + L+L T +N P + IS+ LLG N+
Sbjct: 260 HKILNRFPDLPINVLDGIDKKWKVNDI--SLNLQGTYYTLNLPENRKQKISTNLLGSFNV 317
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRL 236
N A G+ +G LE + ++++ +PGR +++ ++++ +VDYAHTPDAL +
Sbjct: 318 RNTALAFLTGVGIGLDLEKMSNSLKKIPQIPGRFQIVYSKDRSRMAVVDYAHTPDALENI 377
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ SVR+ P+R+IT+ GC G+ DR KRP M +IA + SD ILTSDNP E P ILD++
Sbjct: 378 IRSVRDSQPKRLITLFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEI 437
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGH 355
G +D+ P L ++ R A+ ++ EG ++VAGKGH
Sbjct: 438 QTGFS-----------SDFVP--------LLREVDRAKAIAEGISCLPEGGCLLVAGKGH 478
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E YQI G +K F D EE ++A
Sbjct: 479 EEYQIIGKEKRHFSDVEEVQKAF 501
>gi|345883071|ref|ZP_08834520.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella sp. C561]
gi|345044109|gb|EGW48156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella sp. C561]
Length = 485
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 203/382 (53%), Gaps = 36/382 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI+ D + + TTPD + + L+AKM+ G E ME SSH +
Sbjct: 129 FGYKVGLLSTVCNYIN-DEEYPASHTTPDPIELNCLLAKMVDEGCEYAFMECSSHAIHQH 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R +DF +FTNLTRDH+D+H T E YRNAK F + + + N DD N
Sbjct: 188 RIGGLDFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGL--SKNAFAITNADDKNG--M 243
Query: 121 IAQGNPDVPVVTFA---MENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
I N V T++ M + +A + FE E E+ +G+ N+
Sbjct: 244 IMVQNTKATVKTYSIKRMADFRAKILECHFEGMYLEIDG--------KEVGVQFIGKFNV 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA I +G E+I+ + + +V GR E I + F +VDYAHTPDAL +L
Sbjct: 296 SNLLAVYGAAIMLGKKPEEILIAMSTLKSVNGRLEPIQSPEGFTAVVDYAHTPDALENVL 355
Query: 238 DSVRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+++ ++ + +ITV G G D+GKRPLM + A +SD ILTSDNP +E+P I+D
Sbjct: 356 NAIHDVLDGKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNPRDEEPQAIID 415
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
DMLAG+ T ++ + L + D R+ A+R A M ++GD+++VAGKG
Sbjct: 416 DMLAGLDTTQRKKV----------------LTIVD-RKEAIRTAAMMAKKGDVILVAGKG 458
Query: 355 HETYQIEGDKKEFFDDREESRE 376
HE YQ K FDD E RE
Sbjct: 459 HENYQEINGVKHHFDDHEVIRE 480
>gi|443656695|ref|ZP_21131746.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Microcystis aeruginosa DIANCHI905]
gi|159028369|emb|CAO87267.1| murE [Microcystis aeruginosa PCC 7806]
gi|443333320|gb|ELS47884.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Microcystis aeruginosa DIANCHI905]
Length = 496
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 204/357 (57%), Gaps = 28/357 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +AK + G E VME SSH LA GR F + VFTNLTRDH+D+H
Sbjct: 159 TTPFANELQASLAKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKAKLFS D + + ++N+DD A +P V+T+++ + +AD +
Sbjct: 219 MEDYFAAKAKLFSP--DYLQGKAIINLDDAYGQRLAASLSPQ-QVLTYSVCDARADFYTK 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ ++ TP G + +S L+G++N+ N+LAAVA + G LE ++ I +
Sbjct: 276 DLHYQSTGVEGVMVTPQGEIAFASPLVGQYNLANLLAAVAAVLECGVDLETVIGQIPQFS 335
Query: 206 AVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q VIVDYAHTPD+L +L + R R+I V GC G+ DR KR
Sbjct: 336 GVPGRMERVSIAPDQDISVIVDYAHTPDSLENVLKATRPFISGRMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM KIA + +D+ I+TSDNP E P IL+D++AG+ PP
Sbjct: 396 PLMGKIAAELADLAIVTSDNPRTEAPERILEDIIAGI----------------PP----- 434
Query: 324 RLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + I R +A+ A+ + GD V++AGKGHE YQI G +K FDDRE++R AL
Sbjct: 435 EITVQVISDRALAIDTAIQTAQPGDGVIIAGKGHEDYQILGTEKIHFDDREQARAAL 491
>gi|410658126|ref|YP_006910497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dehalobacter sp. DCA]
gi|410661116|ref|YP_006913487.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dehalobacter sp. CF]
gi|409020481|gb|AFV02512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dehalobacter sp. DCA]
gi|409023472|gb|AFV05502.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dehalobacter sp. CF]
Length = 492
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 206/379 (54%), Gaps = 25/379 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ I G+N TTP++ +Q L+A+M+ + VME SSH L LGR
Sbjct: 132 GKKTGLIGTLGSRI-GNNAYPGQHTTPESTEIQLLLAEMVAENVDLAVMEVSSHALDLGR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
+ F+ +FTNLT+DH+D+H +EY KA LFS + + + V+N DD +
Sbjct: 191 VNGCVFNAGIFTNLTQDHLDYHKDMQEYLKVKALLFSGLNGGKAGQLAVLNADDVSCVFL 250
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
Q VT+ ++++ AD + LS + V EI G+ ++YN+
Sbjct: 251 KEQAG--CRAVTYGVDHE-ADYRAVNIRLSDRGVEFDVIFHGKSAEIFYSTPGKFSVYNV 307
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA+A + G P E +V+ + + VPGR E I + Q F VIVDYAHTPD L +L +
Sbjct: 308 LAAIAWALESGYPTEIVVQALHSIKGVPGRFESIRKGQPFLVIVDYAHTPDGLENVLRTA 367
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
RE+ ++ITV GC G+ DR KRPLM + A SD ++TSDNP EDP I++D++
Sbjct: 368 REITAGKLITVFGCGGDRDRKKRPLMGEAAGRFSDYIVVTSDNPRTEDPDKIIEDII--- 424
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
P L + + + D R A+ A GD V++AGKGHE YQI
Sbjct: 425 ----------------PGLKSANYKVIKD-RCSAIDEACTAAGSGDTVLIAGKGHEDYQI 467
Query: 361 EGDKKEFFDDREESREALQ 379
G +K FDDREE+ + L+
Sbjct: 468 LGTEKIHFDDREEADKVLR 486
>gi|340347385|ref|ZP_08670494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella dentalis DSM 3688]
gi|339609477|gb|EGQ14349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella dentalis DSM 3688]
Length = 501
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 141/378 (37%), Positives = 205/378 (54%), Gaps = 29/378 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI D + + TTPD + + L+A+M+ G E ME SSH +A
Sbjct: 145 MGHKCGLLSTVCNYIE-DEAIPADHTTPDPIELNMLLARMVEAGCEYAFMECSSHAIAQK 203
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 204 RIAGLKFTGGIFTNLTRDHLDYHKTFENYRNAKKAFFDGL--PKTAFAITNADDKNGMVM 261
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N V T++M + AD E+ F L H E+ +G+ N+ N+
Sbjct: 262 VQ--NTKAVVKTYSMR-QMADFRARIIEMH-FAGMYLDVDGH---EVGVQFIGKFNVSNL 314
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +G E+I+ + + +V GR E I + + IVDYAHTPDAL+ +L+++
Sbjct: 315 LAVYGAARMLGKQPEEILVVLSTLHSVSGRLEPITSPEGYTGIVDYAHTPDALANVLNAI 374
Query: 241 RELAPRR--IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ + +ITV G G D+GKRPLM + A +SD I+TSDNP E+P DI++DM+A
Sbjct: 375 HEVLNGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDRVIITSDNPRFENPQDIINDMMA 434
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ Q+ + + + D RR A+R A M +GD+++VAGKGHE Y
Sbjct: 435 GLNADQQKKV----------------ISMAD-RREAIRTACMMARKGDVILVAGKGHENY 477
Query: 359 QIEGDKKEFFDDREESRE 376
Q K FDDRE R+
Sbjct: 478 QEIQGVKHHFDDREVLRD 495
>gi|433651152|ref|YP_007277531.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prevotella dentalis DSM
3688]
gi|433301685|gb|AGB27501.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prevotella dentalis DSM
3688]
Length = 485
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 141/378 (37%), Positives = 204/378 (53%), Gaps = 29/378 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI D + + TTPD + + L+A+M+ G E ME SSH +A
Sbjct: 129 MGHKCGLLSTVCNYIE-DEAIPADHTTPDPIELNMLLARMVEAGCEYAFMECSSHAIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 188 RIAGLKFTGGIFTNLTRDHLDYHKTFENYRNAKKAFFDGL--PKTAFAITNADDKNGMVM 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N V T++M + AD E+ F L H E+ +G+ N+ N+
Sbjct: 246 VQ--NTKAVVKTYSMR-QMADFRARIIEMH-FAGMYLDVDGH---EVGVQFIGKFNVSNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +G E+I+ + + +V GR E I + + IVDYAHTPDAL+ +L+++
Sbjct: 299 LAVYGAARMLGKQPEEILVVLSTLHSVSGRLEPITSPEGYTGIVDYAHTPDALANVLNAI 358
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ +ITV G G D+GKRPLM + A +SD I+TSDNP E+P DI++DM+A
Sbjct: 359 HEVLNGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDRVIITSDNPRFENPQDIINDMMA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ Q+ + + + D RR A+R A M +GD+++VAGKGHE Y
Sbjct: 419 GLNADQQKKV----------------ISMAD-RREAIRTACMMARKGDVILVAGKGHENY 461
Query: 359 QIEGDKKEFFDDREESRE 376
Q K FDDRE R+
Sbjct: 462 QEIQGVKHHFDDREVLRD 479
>gi|187251914|ref|YP_001876396.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum
Pei191]
gi|186972074|gb|ACC99059.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum
Pei191]
Length = 479
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 134/391 (34%), Positives = 208/391 (53%), Gaps = 42/391 (10%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ ++ +++Y I+G+ ++P TTP A+ + ++ KM GT+ V+ME SSH L L R
Sbjct: 121 GIPCSVIGTINYRINGEVFAKAPNTTPAALYLYYMIDKMRSAGTKVVIMEVSSHALELKR 180
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK--VVNIDDPNATS 119
++FD+A+FTNL RDHMDFH E Y AK KLF +++ + K +VNIDD
Sbjct: 181 VFGLNFDVALFTNLQRDHMDFHKNFENYFAAKEKLFDSLIENSKPAKTAIVNIDDQYGLR 240
Query: 120 F---IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
I +PV EN K ++ + F + S LLG+HN
Sbjct: 241 LADKIKAKTTLIPVSLVEAENVKESLNGVTFS-------------YKGESASINLLGKHN 287
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
+YN + AV +A G L+ ++GI ++ +PGR + +++ Q F V VD+A+T ++L +
Sbjct: 288 LYNAVFAVKAAMAYGVDLQTALKGIAKLQGIPGRMQRVNKGQPFYVFVDFAYTTESLMKA 347
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+++ IITV GC G+ DR KRPLM A S +LT+DNP ED I +D+
Sbjct: 348 YETLEPYKNGNIITVFGCGGDRDRTKRPLMGLAACQNSSHVLLTNDNPRTEDQQQIFNDI 407
Query: 297 LAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
L G+ G+T E ++ R +A++ +++ +E D++++AGKGH
Sbjct: 408 LNGMKGYTNYEIVQ--------------------DRALAIKTGISLCKENDILLIAGKGH 447
Query: 356 ETYQIEGDKKEFFDDREESR---EALQYVDE 383
E YQI K F DRE + E L YV +
Sbjct: 448 EDYQILAGKTIHFSDRETAETELEKLGYVQK 478
>gi|419841082|ref|ZP_14364460.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Fusobacterium necrophorum subsp. funduliforme
ATCC 51357]
gi|386906101|gb|EIJ70846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Fusobacterium necrophorum subsp. funduliforme
ATCC 51357]
Length = 483
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/386 (36%), Positives = 209/386 (54%), Gaps = 47/386 (12%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ ++ Y I G +E+P TTP+++ + ++ K G E +VME SSH L LGR +
Sbjct: 131 KVARFGTIEYKI-GKEVIEAPNTTPESLDLIKMIKKAHDQGLEYIVMEVSSHALELGRVN 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
++FD A+FTNLT DH+D+H T E+Y AK KLF + + K+ NIDD +
Sbjct: 190 MLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKF--RGKGIKIFNIDDSYGKRLWEE 247
Query: 124 GNPDVPVVTFAMENKKADVHPL---------KFELSLFETQVLVNTPHGILEISSGLLGR 174
+ V++ M KADV K ELSLF + E +LG
Sbjct: 248 FHG----VSYGM--NKADVQGKILAFEGGREKIELSLFGNKK---------ECKIQILGG 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+YN+L ++A+ +G EDI+ + + PGR E +D Q + VI+DYAHT DAL
Sbjct: 293 FNLYNLLGSLALVKELGMSEEDILSKLGNLKGAPGRFETLDCGQDYMVIIDYAHTGDALE 352
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L +V+E+ +IIT+ GC G+ D KRP+M +IA SD +LTSDNP E+P IL+
Sbjct: 353 NILQAVQEIKSGKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILE 412
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
++ + G+T + ++ E R A+ + +GDMV++AGKG
Sbjct: 413 EVKS--GFTKENHICILE------------------RAEAIAEGIRRANKGDMVLIAGKG 452
Query: 355 HETYQIEGDKKEFFDDREESREALQY 380
HETYQI G KK FDDRE +R + +
Sbjct: 453 HETYQILGRKKYHFDDREFARREIVF 478
>gi|299534526|ref|ZP_07047858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Lysinibacillus fusiformis ZC1]
gi|424738185|ref|ZP_18166627.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Lysinibacillus fusiformis ZB2]
gi|298729899|gb|EFI70442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Lysinibacillus fusiformis ZC1]
gi|422947887|gb|EKU42276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Lysinibacillus fusiformis ZB2]
Length = 488
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 212/385 (55%), Gaps = 28/385 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG ++ + ++ + ++G ES TT DA+ Q ++ + G + ME SSHGLALG
Sbjct: 128 MGEKSALSGTIGFNLNG-ILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVSSHGLALG 186
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-VDPERHRKVV-NIDDPNAT 118
R + VD+DIA+FTNLT DH+DFHGT EEY +AK LFS++ D E+++ VV N DD +
Sbjct: 187 RLAGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE 246
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
+ A PV T+ ++N+ AD + E + T V P GI + LLG NIY
Sbjct: 247 RYAAM--TPFPVWTYGLKNENADFRAINCEYHDYMTSFDVEMPEGIYRVKMNLLGEFNIY 304
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N+LAA+ G +E I+ IE++ V GR E + E + +DYAHTPDA+ + ++
Sbjct: 305 NVLAAMIAFYGRGYSMESIIEQIEQLPPVKGRMEKVCSELPVQIFIDYAHTPDAIEKAIE 364
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ + ++I +VG G D+ KRP M + A+ ++ ILT+D+P ED I D+
Sbjct: 365 AAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKAS-AAEYVILTTDDPRYEDYDSITGDLAK 423
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ +D Y + + R AVR AV + E GDM++ AGKGHE Y
Sbjct: 424 GM-----------LHDNYACIGD---------RAEAVRHAVEIAEPGDMIIFAGKGHEDY 463
Query: 359 QIEGDKKEFFDDREESREA--LQYV 381
QI + K D E + EA L++V
Sbjct: 464 QIIENTKFPHSDAEIAIEAGRLKFV 488
>gi|410096280|ref|ZP_11291268.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides goldsteinii CL02T12C30]
gi|409226617|gb|EKN19524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides goldsteinii CL02T12C30]
Length = 490
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 141/377 (37%), Positives = 201/377 (53%), Gaps = 29/377 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI G+ + + TTPD + + +LMA+M+ G E ME SSH +
Sbjct: 136 MGHKVGLLSTVCNYIDGE-AIPTDHTTPDPITLHSLMARMVEAGCEYAFMEVSSHSIDQK 194
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + FD +FTNLTRDH+D+H T E Y AK K F + P + N DD +
Sbjct: 195 RISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PAGAFALTNADDK--SGL 250
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +T+++ AD E T++++N E+ +GR N YN+
Sbjct: 251 VMLQNTAAKKLTYSLRT-LADFKGKILESHFEGTEMIINGR----EVVVHFVGRFNAYNL 305
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +++G E+ + + + +V GR E I + + IVDYAHTPDAL+ +L+ +
Sbjct: 306 LAVYGAAVSLGKDPEETLIVLSTLHSVSGRFETIQSPKGYTAIVDYAHTPDALTNVLNGI 365
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ RIITVVG G D+GKRPLM K A SD ILTSDNP E+P DI++DM+A
Sbjct: 366 DEVLNGRGRIITVVGAGGNRDKGKRPLMAKEAAKLSDQVILTSDNPRFEEPDDIINDMVA 425
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ E R R A++ A + ++GD+++VAGKGHE Y
Sbjct: 426 GLSKADME-----------------RTLCITDRMQAIKTAAMLAKKGDVILVAGKGHEDY 468
Query: 359 QIEGDKKEFFDDREESR 375
Q K FDDRE R
Sbjct: 469 QEVKGVKHHFDDREVIR 485
>gi|262037677|ref|ZP_06011120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptotrichia goodfellowii F0264]
gi|261748289|gb|EEY35685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptotrichia goodfellowii F0264]
Length = 490
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/366 (36%), Positives = 207/366 (56%), Gaps = 24/366 (6%)
Query: 18 DNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTR 77
D + E+ TTP+++ + L+ + + G E +ME SSH L +GR + + FD A+FTNLT+
Sbjct: 143 DEEFETVNTTPESLELVKLINESVKRGVEYFIMEVSSHALEIGRVNMLKFDSAIFTNLTQ 202
Query: 78 DHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGN--PDVPVVTFAM 135
DH+DFH T E Y NAK K+FS + + VNIDD I + +V T ++
Sbjct: 203 DHLDFHKTMENYFNAKRKIFSMLRNS--GTGTVNIDDGYGKRIIEEKKDAENVCYKTVSI 260
Query: 136 ENKKADVHPLKFELSL--FETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAP 193
++K AD++ E + + +++ N I+ L+G +N+YN+L A +A+G
Sbjct: 261 KDKNADLYGEIAEYTNDGMKIKIVHNDKEYFANIN--LVGEYNLYNVLGCAASALALGIE 318
Query: 194 LEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVG 253
+E I+ ++++ +VPGR E + + ++VDYAHT D L+ + ++R++ R+ITV G
Sbjct: 319 IEKIIEKLQKMPSVPGRFETVKNNKNARIVVDYAHTDDGLTNIGKTLRKITDNRVITVFG 378
Query: 254 CAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEN 313
G+ D KRP M K A + SD ILTSDNP E+P +IL ++ AG+
Sbjct: 379 AGGDRDNKKRPKMAKAAAEFSDFIILTSDNPRTENPANILKEVEAGLIEI---------- 428
Query: 314 DYYPPLPNGHRLFLHDIRRVAVRCAVA-MGEEGDMVVVAGKGHETYQIEGDKKEFFDDRE 372
P + D R A++ AV M EGD +++AGKGHETYQI G +K FDDRE
Sbjct: 429 ----NFPKDKYTVIED-REQAIKYAVQEMTGEGDSLLIAGKGHETYQIIGKEKRHFDDRE 483
Query: 373 ESREAL 378
+++ L
Sbjct: 484 IAKKYL 489
>gi|423259354|ref|ZP_17240277.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL07T00C01]
gi|423263674|ref|ZP_17242677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL07T12C05]
gi|387776934|gb|EIK39034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL07T00C01]
gi|392707096|gb|EIZ00216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL07T12C05]
Length = 485
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 205/384 (53%), Gaps = 41/384 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGRMADKGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNSFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTKSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I Q + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG+ ++ L + D R+ A+R A + E+GD+++VAG
Sbjct: 413 INDMLAGLDTEDKK----------------KTLSIAD-RKEAIRTACMLAEKGDVILVAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESRE 376
KGHE YQ K FDD+E +E
Sbjct: 456 KGHENYQDIKGVKHHFDDKEVLKE 479
>gi|425437282|ref|ZP_18817705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9432]
gi|389677781|emb|CCH93318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9432]
Length = 496
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 204/357 (57%), Gaps = 28/357 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +AK + G E VME SSH LA GR F + VFTNLTRDH+D+H
Sbjct: 159 TTPFANELQASLAKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKAKLFS D + + ++N+DD A +P V+T+++ + +AD +
Sbjct: 219 MEDYFAAKAKLFSP--DYLQGKAIINLDDAYGQRLAASLSPQ-QVLTYSVCDARADFYTK 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ ++ TP G + +S L+G++N+ N+LAAVA + G LE ++ I +
Sbjct: 276 DLHYQPTGVEGVMVTPQGEIAFASPLVGQYNLANLLAAVAAVLECGVDLETVIGQIPQFS 335
Query: 206 AVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q VIVDYAHTPD+L +L + R R+I V GC G+ DR KR
Sbjct: 336 GVPGRMERVSIAPDQDISVIVDYAHTPDSLENVLKATRPFISGRMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM KIA + +D+ I+TSDNP E P IL+D++AG+ PP
Sbjct: 396 PLMGKIAAELADLAIVTSDNPRTEAPERILEDIIAGI----------------PP----- 434
Query: 324 RLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + I R +A+ A+ + GD V++AGKGHE YQI G +K FDDRE++R AL
Sbjct: 435 EITVQVIGDRALAIDTAIQTAQPGDGVIIAGKGHEDYQILGTEKIHFDDREQARAAL 491
>gi|158334577|ref|YP_001515749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Acaryochloris marina MBIC11017]
gi|158304818|gb|ABW26435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Acaryochloris marina MBIC11017]
Length = 499
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 206/364 (56%), Gaps = 29/364 (7%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
+++ + TTP AV +Q ++ + + VME SSH LA R F +AVF+NLT+D
Sbjct: 156 HQVTAAHTTPFAVDLQQQLSDAVAAQCQFGVMEVSSHALAQKRVLGCQFTVAVFSNLTQD 215
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENK 138
H+D+H E+Y AKA LFS D + R ++NIDD + Q P+ T+++E
Sbjct: 216 HLDYHQDMEDYFAAKALLFSP--DYLQGRAIINIDDVYGQRLVDQIGPN-QCWTYSIEGP 272
Query: 139 KADVHP--LKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLED 196
AD++ L +E + + Q+ +TP G +E S L+G+ N+ N+LAAV + +G LE
Sbjct: 273 -ADLYTSGLSYETAGVKGQL--HTPKGTVEFFSSLVGQFNVSNLLAAVGAVLELGLTLEQ 329
Query: 197 IVRGIEEVDAVPGRCELI--DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
I + + VPGR + I +Q VIVDYAHTPD+L LL + R ++ V GC
Sbjct: 330 ITPALAQFPGVPGRMQQITYSADQDISVIVDYAHTPDSLENLLKAARPFVKGQMACVFGC 389
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DR KRPLM +IA SD I+TSDNP EDP IL D+LAG+
Sbjct: 390 GGDRDRTKRPLMGEIAARLSDQAIVTSDNPRTEDPQQILQDVLAGI-------------- 435
Query: 315 YYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREES 374
P + + RRVA++ A+A + GD +++AGKGHE YQI G +K FDDREE+
Sbjct: 436 -----PMEVKPIVEVDRRVAIQAAIAQAKPGDTILIAGKGHEDYQILGTEKIHFDDREEA 490
Query: 375 REAL 378
+ AL
Sbjct: 491 QAAL 494
>gi|425451235|ref|ZP_18831057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 7941]
gi|389767616|emb|CCI07074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 7941]
Length = 496
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 204/357 (57%), Gaps = 28/357 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +AK + G E VME SSH LA GR F + VFTNLTRDH+D+H
Sbjct: 159 TTPFANELQASLAKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKAKLFS D + + ++N+DD A +P V+T+++ + +AD +
Sbjct: 219 MEDYFAAKAKLFSP--DYLQGKAIINLDDEYGQRLAASLSPQ-QVLTYSVCDARADFYTK 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ ++ TP G + +S L+G++N+ N+LAAVA + G LE ++ I +
Sbjct: 276 DLHYQPTGVEGVMVTPQGEIAFASPLVGQYNLANLLAAVAAVLECGVDLETVIGQIPQFS 335
Query: 206 AVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q VIVDYAHTPD+L +L + R R+I V GC G+ DR KR
Sbjct: 336 GVPGRMERVSIAPDQDISVIVDYAHTPDSLENVLKATRPFISGRMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM KIA + +D+ I+TSDNP E P IL+D++AG+ PP
Sbjct: 396 PLMGKIAAELADLAIVTSDNPRTEAPERILEDIIAGI----------------PP----- 434
Query: 324 RLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + I R +A+ A+ + GD V++AGKGHE YQI G +K FDDRE++R AL
Sbjct: 435 EITVQVISDRALAIDTAIQAAQPGDGVIIAGKGHEDYQILGTEKIHFDDREQARAAL 491
>gi|345874742|ref|ZP_08826542.1| hypothetical protein l11_06230 [Neisseria weaveri LMG 5135]
gi|417958018|ref|ZP_12600935.1| hypothetical protein l13_13470 [Neisseria weaveri ATCC 51223]
gi|343967410|gb|EGV35655.1| hypothetical protein l13_13470 [Neisseria weaveri ATCC 51223]
gi|343970101|gb|EGV38299.1| hypothetical protein l11_06230 [Neisseria weaveri LMG 5135]
Length = 491
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/362 (36%), Positives = 196/362 (54%), Gaps = 30/362 (8%)
Query: 22 ESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMD 81
E+ TTPD V VQ L+ + G +AV ME SSHGL R + V F AVFTNLTRDH+D
Sbjct: 152 EATHTTPDPVSVQTLLHRFKQQGAKAVAMEVSSHGLDQFRVNGVPFQTAVFTNLTRDHLD 211
Query: 82 FHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF---IAQGNPDVPVVTFAMENK 138
+HG+ E Y K++LF V+N+DDP + + P++ V + +
Sbjct: 212 YHGSMESYGEIKSRLFYWQ---GLQHAVINVDDPFGKTLAGRLKTERPELNVYGYGFA-E 267
Query: 139 KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIV 198
+AD+ +F S V ++TP G E+ + LLGR N N+ + V V + G PL +++
Sbjct: 268 QADIRITRFTASSDGMTVQLDTPWGSGEVKTRLLGRFNAQNLASCVGVLCSAGYPLAEVL 327
Query: 199 RGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPR--RIITVVGCAG 256
R + ++ GR + I V+VDYAHTPDAL + L +++E+ P+ + V GC G
Sbjct: 328 RVLAQIRPATGRMDCIMNTGKPLVVVDYAHTPDALEKALATLQEIKPQDANLWCVFGCGG 387
Query: 257 ESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYY 316
D+GKRPLM A +D ++TSDNP E+P DI++D+L V
Sbjct: 388 NRDKGKRPLMGAAAVAGADKVVVTSDNPRMEEPADIINDILPAV---------------- 431
Query: 317 PPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESRE 376
P P + RR A+ AV D++++AGKGHETYQ +K +F D +E+++
Sbjct: 432 -PQPE----HVETDRRSAIEYAVKHAAANDIILIAGKGHETYQDVQGQKHYFSDFDEAQK 486
Query: 377 AL 378
AL
Sbjct: 487 AL 488
>gi|423269848|ref|ZP_17248820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL05T00C42]
gi|423272698|ref|ZP_17251645.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL05T12C13]
gi|392700694|gb|EIY93856.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL05T00C42]
gi|392708612|gb|EIZ01718.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL05T12C13]
Length = 485
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 205/384 (53%), Gaps = 41/384 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNSFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTKSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I Q + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG+ ++ L + D R+ A+R A + E+GD+++VAG
Sbjct: 413 INDMLAGLDTEDKK----------------KTLSIAD-RKEAIRTACMLAEKGDVILVAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESRE 376
KGHE YQ K FDD+E +E
Sbjct: 456 KGHENYQDIKGVKHHFDDKEVLKE 479
>gi|423248263|ref|ZP_17229279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL03T00C08]
gi|423253212|ref|ZP_17234143.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL03T12C07]
gi|392657112|gb|EIY50749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL03T12C07]
gi|392660370|gb|EIY53984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL03T00C08]
Length = 485
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 205/384 (53%), Gaps = 41/384 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNSFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTKSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I Q + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG+ ++ L + D R+ A+R A + E+GD+++VAG
Sbjct: 413 INDMLAGLDTEDKK----------------KTLSIAD-RKEAIRTACMLAEKGDVILVAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESRE 376
KGHE YQ K FDD+E +E
Sbjct: 456 KGHENYQDIKGVKHHFDDKEVLKE 479
>gi|336407788|ref|ZP_08588284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 2_1_56FAA]
gi|375356690|ref|YP_005109462.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase
[Bacteroides fragilis 638R]
gi|383116602|ref|ZP_09937350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 3_2_5]
gi|423282436|ref|ZP_17261321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis HMW 615]
gi|251948124|gb|EES88406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 3_2_5]
gi|301161371|emb|CBW20911.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
te ligase [Bacteroides fragilis 638R]
gi|335944867|gb|EGN06684.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 2_1_56FAA]
gi|404582004|gb|EKA86699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis HMW 615]
Length = 485
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 205/384 (53%), Gaps = 41/384 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNSFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTKSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I Q + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG+ ++ L + D R+ A+R A + E+GD+++VAG
Sbjct: 413 INDMLAGLDTEDKK----------------KTLSIAD-RKEAIRTACMLAEKGDVILVAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESRE 376
KGHE YQ K FDD+E +E
Sbjct: 456 KGHENYQDIKGVKHHFDDKEVLKE 479
>gi|262377040|ref|ZP_06070266.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii
SH145]
gi|262308078|gb|EEY89215.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii
SH145]
Length = 498
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/359 (37%), Positives = 199/359 (55%), Gaps = 26/359 (7%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QN + G E +EASSHGL GR + D +IA ++NL+RDH+D+
Sbjct: 149 SSHTTLDALQLQNALHGYAQAGAEFASIEASSHGLEQGRLNGCDIEIAGYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVPVVTFAMENKKA 140
HGT + Y AK+ LF V+NIDD +A + A+ NP P + +KA
Sbjct: 209 HGTLQAYAEAKSGLFRF---ESLKVAVINIDDEHAQIMLDAAKNNPAQPKILTYSTTQKA 265
Query: 141 DVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200
D + S+ + T ++S LLG NI N++A++ + G LE ++
Sbjct: 266 DYQVQDIQYSISGATFKLKTASAEYIVNSPLLGHFNIENLVASLIMAEQAGFELESLIAT 325
Query: 201 IEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259
+ ++ PGR +++ D E+ F +VDYAHTPDAL+++L +++ + + V GC G+ D
Sbjct: 326 VPQLKGAPGRMQVLRDGERLF--VVDYAHTPDALTQVLVTLKRHVSQNLWAVFGCGGDRD 383
Query: 260 RGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPL 319
RGKRPLMT+ A D SD+ +LTSDNP EDP I DM G+ ++ + Y +
Sbjct: 384 RGKRPLMTQAALDGSDIAVLTSDNPRTEDPAQIFADMKNGIDFSGKTYHE---------- 433
Query: 320 PNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+HD RR A++ AV + GD+VV+AGKGHE YQ + +FDD E + A+
Sbjct: 434 -------IHD-RREAIKFAVKHAQAGDIVVIAGKGHENYQEIDGVRHWFDDVIEVQAAI 484
>gi|418696350|ref|ZP_13257359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira kirschneri str. H1]
gi|409955879|gb|EKO14811.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira kirschneri str. H1]
Length = 504
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 209/383 (54%), Gaps = 28/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ G++ ++ GD +++ TTPDA + ++ +M G V MEASSHGL LGR
Sbjct: 141 GINCGLIGTIGVKF-GDRVIDTGYTTPDASSLNLILKQMKEEGITTVFMEASSHGLKLGR 199
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF- 120
+ + VFTNLT+DH+DFH E+Y +K +LF + + V++ PN +
Sbjct: 200 MNGISIRAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDFSKSAFAVLDYSAPNGSKLY 259
Query: 121 --IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILE-ISSGLLGRHNI 177
I PD+P+ +KK V+ + L+L T +N P + IS+ LLG N+
Sbjct: 260 HKILNRFPDLPINVLDGIDKKWKVNDI--SLNLQGTYYTLNLPENRKQKISTNLLGSFNV 317
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRL 236
N A G+ +G LE + ++++ +PGR +++ ++++ +VDYAHTPDAL +
Sbjct: 318 RNTALAFLTGVGIGLDLEKMSNSLKKIPQIPGRFQIVYSKDRSRMAVVDYAHTPDALENI 377
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ SVR+ P+R+IT+ GC G+ DR KRP M +IA + SD ILTSDNP E P ILD++
Sbjct: 378 IRSVRDSQPKRLITLFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEI 437
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGH 355
G +D+ P L ++ R A+ ++ EG ++VAGKGH
Sbjct: 438 QTGFS-----------SDFVP--------LLREVDRAKAIAEGISCLPEGGCLLVAGKGH 478
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E YQI G +K F D EE ++A
Sbjct: 479 EEYQIIGKEKRHFSDVEEVQKAF 501
>gi|406946952|gb|EKD77997.1| hypothetical protein ACD_42C00091G0001, partial [uncultured
bacterium]
Length = 525
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 200/377 (53%), Gaps = 28/377 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
M + GM+ ++ Y K + TTPD + +Q + A++L G + + ME SSH LA
Sbjct: 132 MSVSCGMIGTLGYGFFPQLK-KLTNTTPDGLQLQKIFAELLLQGAKTIAMEVSSHALAQQ 190
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R ++V F AVFTNLT+DH+D+H T E YR+ KA LF + P V+NIDD F
Sbjct: 191 RVNDVLFHTAVFTNLTQDHLDYHHTMENYRDTKALLFQK---PNLQNAVINIDDDAGKYF 247
Query: 121 IA-----QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+ G+ V V+T+A+ + AD+ LK + + + + TP G E+ L+G
Sbjct: 248 VEALQKPSGSAGVNVITYALHDNHADISVLKCTPTQYGFDINIKTPWGDGELHLPLIGEF 307
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
NI N LA + V + P I++ + ++ V GR +L + + +VDYAHTPDAL +
Sbjct: 308 NISNALATIGVLGILKMPFNKIIQSLSQLKTVNGRMQLFQAKNSVHTVVDYAHTPDALEK 367
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L S+R ++ V GC G+ D+ KRP M IA + +D I+TSDN +EDP I D
Sbjct: 368 TLCSIRSHCTGKLWCVFGCGGDRDKTKRPTMGLIADNIADHIIITSDNARSEDPTQIAQD 427
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+L+GV N ++ + R A+ A+ + ++ D V++AGKGH
Sbjct: 428 ILSGV-------------------KNKNKCEIELDRVKAIEKAIHLAQKNDWVLIAGKGH 468
Query: 356 ETYQIEGDKKEFFDDRE 372
ET QI G++ D E
Sbjct: 469 ETEQIIGNQVMHHSDVE 485
>gi|331269348|ref|YP_004395840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Clostridium botulinum BKT015925]
gi|329125898|gb|AEB75843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Clostridium botulinum BKT015925]
Length = 483
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 212/384 (55%), Gaps = 52/384 (13%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ +I G+ K+++ RTTP+++ + + KM E +ME SSH L+L R
Sbjct: 129 GCNTGLIGTIANFI-GEEKIKAERTTPESLELHEMFKKMKDKNIEYCIMEVSSHSLSLDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
++F VFTNLT+DH+DFH T E Y AK +F+ ++NIDD +
Sbjct: 188 VYGLEFSQGVFTNLTQDHLDFHKTFENYYEAKLSMFNNA-----KNSIINIDDSYGERML 242
Query: 122 AQGNPDVP----VVTFAMENKKADV-------HPLKFELSLFETQVLVNTPHGILEISSG 170
D+P VT++ E ++AD+ H E L ++ I+
Sbjct: 243 ----KDIPNTNLKVTYSTE-RQADLVANNIVNHARGAEFDLIYKGTTIH-------INLS 290
Query: 171 LLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQ--AFGVIVDYAH 228
+ G +N+YN L + + +E + G+E V VPGRCE + ++ F VIVDYAH
Sbjct: 291 IPGIYNVYNALCSAGACLEEEISIEKVKEGLENV-VVPGRCENVTKKYNLGFDVIVDYAH 349
Query: 229 TPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
TPD L +L++ ++ R+I+V GC G+ D+ KRP+M KI +D SD+ I+TSDNP E+
Sbjct: 350 TPDGLENILNTAKDFTKGRLISVFGCGGDRDKTKRPIMGKIGSDLSDIAIITSDNPRTEE 409
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P+ I+DD+++G+ + D Y + N R+ A++ A+ + ++ D++
Sbjct: 410 PMSIIDDVVSGI-----------DKDNYVVVEN---------RKDAIKEAMKIAKKDDVI 449
Query: 349 VVAGKGHETYQIEGDKKEFFDDRE 372
VVAGKGHE YQI DK FD+RE
Sbjct: 450 VVAGKGHEDYQILKDKVIHFDERE 473
>gi|53711601|ref|YP_097593.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides fragilis YCH46]
gi|81383834|sp|Q64ZL7.1|MURE_BACFR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|52214466|dbj|BAD47059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacteroides fragilis YCH46]
Length = 485
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 205/384 (53%), Gaps = 41/384 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNSFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTKSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I Q + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG+ ++ L + D R+ A+R A + E+GD+++VAG
Sbjct: 413 INDMLAGLDTEDKK----------------KTLSIAD-RKEAIRTACMLAEKGDVILVAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESRE 376
KGHE YQ K FDD+E +E
Sbjct: 456 KGHENYQDIKGVKHHFDDKEVLKE 479
>gi|425440593|ref|ZP_18820891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9717]
gi|389718927|emb|CCH97177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Microcystis aeruginosa PCC 9717]
Length = 496
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/357 (40%), Positives = 202/357 (56%), Gaps = 28/357 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +AK + G E VME SSH LA GR F + VFTNLTRDH+D+H
Sbjct: 159 TTPFANELQASLAKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKAKLFS D + + ++N+DD A +P V+T+++ + +AD +
Sbjct: 219 MEDYFAAKAKLFSP--DYLQGKAIINLDDEYGQRLAASLSPQ-QVLTYSVSDARADFYTK 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
Q ++ TP G + +S L+G++N+ N+LAAVA + G L ++ I +
Sbjct: 276 DLHYQPTGVQGVMVTPQGEIAFASPLVGQYNLANLLAAVAAVLECGVDLGTVIAQIPQFS 335
Query: 206 AVPGRCELID--EEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E + +Q VIVDYAHTPD+L +L + R R+I V GC G+ DR KR
Sbjct: 336 GVPGRMERVSTAHDQDISVIVDYAHTPDSLENVLKATRPFISGRMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM KIA + +D+ I+TSDNP E P IL D++AG+ PP
Sbjct: 396 PLMGKIAAELADLAIVTSDNPRTESPERILQDIVAGI----------------PP----- 434
Query: 324 RLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + I R +A+ A+ + GD V++AGKGHE YQI G +K FDDRE++R AL
Sbjct: 435 EITVQVISDRALAIDTAIQAAQPGDGVIIAGKGHEDYQILGTEKIPFDDREQARAAL 491
>gi|421616040|ref|ZP_16057059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri KOS6]
gi|421618007|ref|ZP_16058988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri KOS6]
gi|409780002|gb|EKN59647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri KOS6]
gi|409782222|gb|EKN61789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri KOS6]
Length = 487
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 217/387 (56%), Gaps = 28/387 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G G++ ++ HG +LE R TTPDA+ VQ +A + G AV +E SSHGL
Sbjct: 126 LGEPCGIIGTLGTGFHG--QLELGRHTTPDAIGVQATLANLKQEGARAVALEVSSHGLEQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + +DFD+AVFTNL+RDH+D+HGT E Y AKA+LF P +V+N+DD
Sbjct: 184 GRVAALDFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFDV---PGLSCRVINLDDAFG-R 239
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+A + ++T+++E+ A ++ + L + TP G + S LLGR N+ N
Sbjct: 240 VLAGEERESRLITYSLEDPSAYLYCAEARLDDDGIHARLITPQGERSMRSPLLGRFNVSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + + PL++I+ + E++ GR + + ++VDYAHTPDAL ++L +
Sbjct: 300 VLAAVGALLGMDYPLDEILAVLPELEGPVGRMQRLGGGDHPLIVVDYAHTPDALEKVLSA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R R++ + GC G+ D GKRPLM ++A +D ++T DNP NE P ILDD+ AG
Sbjct: 360 LRPHTRGRLLCLFGCGGDRDTGKRPLMAEVAQRLADAVLVTDDNPRNEAPEHILDDIRAG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ D +F+H R A+ VA + D+V++AGKGHE YQ
Sbjct: 420 ----------FSNPDAV--------IFMHG-RAQAIASLVAAAQGDDVVLLAGKGHENYQ 460
Query: 360 -IEGDKKEFFDDREESREALQYVDELH 385
I G++ F D E++ AL +E H
Sbjct: 461 EIRGERLP-FSDIEQASAALSVWEEPH 486
>gi|166368093|ref|YP_001660366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Microcystis aeruginosa NIES-843]
gi|166090466|dbj|BAG05174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Microcystis aeruginosa NIES-843]
Length = 497
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 201/355 (56%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +AK + G E VME SSH LA GR F + VFTNLTRDH+D+H
Sbjct: 159 TTPFANELQASLAKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKAKLFS D + + ++N+DD A +P V+T+++ + +AD +
Sbjct: 219 MEDYFAAKAKLFSP--DYLQGKAIINLDDAYGQRLAASLSPQ-QVLTYSVCDARADFYTK 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
Q ++ TP G + +S L+G++N+ N+LAAVA + G L ++ I +
Sbjct: 276 DLHYQPTGVQGVMVTPQGEIAFASPLVGQYNLANLLAAVAAVLECGVDLGKVIGQIPQFS 335
Query: 206 AVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q VIVDYAHTPD+L +L + R R+I V GC G+ DR KR
Sbjct: 336 GVPGRMERVSIAPDQDISVIVDYAHTPDSLENVLKASRPFISGRMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM KIA + +D+ I+TSDNP E P IL D++AG+ P+
Sbjct: 396 PLMGKIAAELADLAIVTSDNPRTESPERILQDIVAGI-------------------PSEI 436
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + R +A+ A+ + GD V++AGKGHE YQI G +K FDDRE++R AL
Sbjct: 437 TVQVISDRALAIDTAIQAAQPGDGVIIAGKGHEDYQILGTEKIHFDDREQARAAL 491
>gi|427419322|ref|ZP_18909505.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptolyngbya sp. PCC
7375]
gi|425762035|gb|EKV02888.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptolyngbya sp. PCC
7375]
Length = 500
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 207/379 (54%), Gaps = 24/379 (6%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
+ TG+L ++ G ++ + TTP V +Q +A ++ G + +ME SSH LA R
Sbjct: 139 MPTGLLGTLYTRWPGHQEM-AVHTTPFPVDLQRELANVVGAGCQHAIMEVSSHALAQKRV 197
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122
FD++VFTNLT+DH+D+H ++Y AKA LF+ D + R ++N DP I
Sbjct: 198 WGCPFDVSVFTNLTQDHLDYHKDLDDYFEAKALLFNS--DYLKGRAIINSRDPYGQKLID 255
Query: 123 QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILA 182
+ + D V T+ +++ AD+H S + TP G +S L+GR N+ N+LA
Sbjct: 256 RLSAD-QVWTYNIDDTAADLHTTDLHYSAAGVSGNLFTPVGSAPFTSPLVGRFNLENLLA 314
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI--DEEQAFGVIVDYAHTPDALSRLLDSV 240
A + +G +E +V + VPGR E + D Q VIVDYAHTPD+L L +
Sbjct: 315 AAGAVLHLGGAVESLVNALATFSGVPGRMERVQADPSQDISVIVDYAHTPDSLENALRAA 374
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R ++I V GC G+ DR KRP M +IA + +D ++TSDNP EDP IL D++AG+
Sbjct: 375 RPFISGQMICVFGCGGDRDRTKRPQMGRIAYELADRVVITSDNPRTEDPQQILADVVAGI 434
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
E D G + D R A++ A+ + GD V++AGKGHE YQI
Sbjct: 435 -----------EADL------GEDEVICD-RATAIQRAILSAQPGDGVLIAGKGHENYQI 476
Query: 361 EGDKKEFFDDREESREALQ 379
G +K FDDRE+S+ AL+
Sbjct: 477 LGTEKIHFDDREQSQRALK 495
>gi|418677078|ref|ZP_13238356.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|418686092|ref|ZP_13247262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|418739701|ref|ZP_13296082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|400322978|gb|EJO70834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|410739518|gb|EKQ84246.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|410752823|gb|EKR09795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 504
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 208/383 (54%), Gaps = 28/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ G++ ++ GD +++ TTPDA + ++ +M G V MEASSHGL LGR
Sbjct: 141 GINCGLIGTIGVKF-GDRVIDTGYTTPDASSLNLILKQMKEEGITTVFMEASSHGLKLGR 199
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF- 120
+ + VFTNLT+DH+DFH E+Y +K +LF + + V++ PN +
Sbjct: 200 MNGISIRAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDFSKSALAVLDYSAPNGSKLY 259
Query: 121 --IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILE-ISSGLLGRHNI 177
I PD+P+ +KK V+ + L+L T +N P + IS+ LLG N+
Sbjct: 260 HKILNRFPDLPINVLDGIDKKWKVNDI--SLNLQGTYYTLNLPENRKQKISTNLLGSFNV 317
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRL 236
N A G+ +G LE + ++++ +PGR +++ +++ +VDYAHTPDAL +
Sbjct: 318 RNTALAFLTGVGIGLDLEKMSNSLKKIPQIPGRFQIVYSRDRSRMAVVDYAHTPDALENI 377
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ SVR+ P+R+IT+ GC G+ DR KRP M +IA + SD ILTSDNP E P ILD++
Sbjct: 378 IRSVRDSQPKRLITLFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEI 437
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGH 355
G +D+ P L ++ R A+ ++ EG ++VAGKGH
Sbjct: 438 QTGFS-----------SDFVP--------LLREVDRAKAIAEGISCLPEGGCLLVAGKGH 478
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E YQI G +K F D EE ++A
Sbjct: 479 EEYQIIGKEKRHFSDVEEVQKAF 501
>gi|340755302|ref|ZP_08691992.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. D12]
gi|421500228|ref|ZP_15947239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Fusobacterium necrophorum subsp. funduliforme
Fnf 1007]
gi|313687128|gb|EFS23963.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. D12]
gi|402268642|gb|EJU18008.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Fusobacterium necrophorum subsp. funduliforme
Fnf 1007]
Length = 483
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 205/385 (53%), Gaps = 45/385 (11%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ ++ Y I G +E+P TTP+++ + ++ K G E +VME SSH L LGR +
Sbjct: 131 KVARFGTIEYKI-GKEVIEAPNTTPESLDLIKMIKKAHDQGLEYIVMEVSSHALELGRVN 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF--- 120
++FD A+FTNLT DH+D+H T E+Y AK KLF ++ + K+ NIDD
Sbjct: 190 MLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKL--RGKGIKIFNIDDSYGKRLWEE 247
Query: 121 -----IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
DV A E + ++ ELSLF + E +LG
Sbjct: 248 FHGVSYGMNKADVQGKILAFEGGREEI-----ELSLFGNKK---------ECKIQILGGF 293
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN+L ++A+ +G EDI + + PGR E +D Q + VI+DYAHT DAL
Sbjct: 294 NLYNLLGSLALVKELGMSDEDIFSKLGNLKGAPGRFETLDCGQDYMVIIDYAHTGDALEN 353
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +V+E+ +IIT+ GC G+ D KRP+M +IA SD +LTSDNP E+P IL++
Sbjct: 354 ILQAVQEIKSGKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILEE 413
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ + G+T + ++ E R A+ + +GDMV++AGKGH
Sbjct: 414 VKS--GFTKENHICILE------------------RAEAIAEGIRRANKGDMVLIAGKGH 453
Query: 356 ETYQIEGDKKEFFDDREESREALQY 380
ETYQI G KK FDDRE +R + +
Sbjct: 454 ETYQILGRKKYHFDDREFARREIVF 478
>gi|265764985|ref|ZP_06093260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 2_1_16]
gi|263254369|gb|EEZ25803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 2_1_16]
Length = 485
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 204/384 (53%), Gaps = 41/384 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNSFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTKSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I Q + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG+ ++ L + D R+ A+R A + E+GD ++VAG
Sbjct: 413 INDMLAGLDTEDKK----------------KTLSIAD-RKEAIRTACMLAEKGDAILVAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESRE 376
KGHE YQ K FDD+E +E
Sbjct: 456 KGHENYQDIKGVKHHFDDKEVLKE 479
>gi|60679851|ref|YP_209995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides fragilis NCTC 9343]
gi|81317077|sp|Q5LIJ3.1|MURE_BACFN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|60491285|emb|CAH06033.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelateligase [Bacteroides fragilis NCTC 9343]
Length = 485
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 205/384 (53%), Gaps = 41/384 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNSFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTKSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I Q + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG+ ++ L + D R+ A+R A + E+GD+++VAG
Sbjct: 413 INDMLAGLDTEDKK----------------KTLSIAD-RKEAIRTACMLAEKGDVILVAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESRE 376
KGHE YQ K FDD+E +E
Sbjct: 456 KGHENYQDIKGVKHHFDDKEVLKE 479
>gi|421090905|ref|ZP_15551695.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira kirschneri str. 200802841]
gi|410000491|gb|EKO51121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira kirschneri str. 200802841]
Length = 504
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 208/383 (54%), Gaps = 28/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ G++ ++ GD +++ TTPDA + ++ +M G V MEASSHGL LGR
Sbjct: 141 GINCGLIGTIGVKF-GDRVIDTGYTTPDASSLNLILKQMKEEGITTVFMEASSHGLKLGR 199
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF- 120
+ + VFTNLT+DH+DFH E+Y +K +LF + + V++ PN +
Sbjct: 200 MNGISIRAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDFSKSAFAVLDYSAPNGSKLY 259
Query: 121 --IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILE-ISSGLLGRHNI 177
I PD+P+ +KK V+ + L+L T +N P + IS+ LLG N+
Sbjct: 260 HKILNRFPDLPINVLDGIDKKWKVNDI--SLNLQGTYYTLNLPENRKQKISTNLLGSFNV 317
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRL 236
N A G+ +G LE + ++++ +PGR +++ +++ +VDYAHTPDAL +
Sbjct: 318 RNTALAFLTGVGIGLDLEKMSNSLKKIPQIPGRFQIVYSRDRSRMAVVDYAHTPDALENI 377
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ SVR+ P+R+IT+ GC G+ DR KRP M +IA + SD ILTSDNP E P ILD++
Sbjct: 378 IRSVRDSQPKRLITLFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEI 437
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGH 355
G +D+ P L ++ R A+ ++ EG ++VAGKGH
Sbjct: 438 QTGFS-----------SDFVP--------LLREVDRAKAIAEGISCLPEGGCLLVAGKGH 478
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E YQI G +K F D EE ++A
Sbjct: 479 EEYQIIGKEKRHFSDVEEVQKAF 501
>gi|255536594|ref|YP_003096965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Flavobacteriaceae bacterium 3519-10]
gi|255342790|gb|ACU08903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Flavobacteriaceae bacterium 3519-10]
Length = 488
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 205/374 (54%), Gaps = 29/374 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G ++ ++S+V Y I D L S TTPD + + ++A+ + G E ME SSHG+
Sbjct: 131 LGFKSALISTVEYRI-ADKVLPSTHTTPDVITLNKILAEAVEAGCEYAFMEVSSHGIHQK 189
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F IA FTN++ DH+D+H T EY K F + +P+ + N+DD N
Sbjct: 190 RTERLHFKIAGFTNISHDHLDYHKTFSEYLKTKQSFFDGL-NPDA-VAITNLDDKNGK-- 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I N ++A++ AD H E +L+N E + L GR N+YN+
Sbjct: 246 IMLQNTKATRKSYALKT-MADYHGKTTETDF--NGMLLNFDGK--EFWTTLTGRFNVYNL 300
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L A A+ + G +D+++ I + V GR E + + ++DYAHTPDAL +LDS+
Sbjct: 301 LLAYAIALECGFHSDDVLKAISLLKRVKGRFETLKSDGGIFFVIDYAHTPDALDNILDSI 360
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ + R+ITV GC GE D+ KRP M KI+T KS +TI+TSDNP +E+P DI+ ++ A
Sbjct: 361 NEIRTKNERLITVFGCGGERDQTKRPEMGKISTRKSTLTIITSDNPRSENPGDIIKEIEA 420
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GV Q Y K Y +P+ RR A++ A+ E D+V+VAGKGHE Y
Sbjct: 421 GV--EPQYYSK------YTSIPD---------RRDAIKMAIKFAEPKDIVLVAGKGHENY 463
Query: 359 QIEGDKKEFFDDRE 372
Q +K FDD+E
Sbjct: 464 QEINGQKVHFDDKE 477
>gi|359405540|ref|ZP_09198299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella stercorea DSM 18206]
gi|357558328|gb|EHJ39824.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella stercorea DSM 18206]
Length = 481
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 138/382 (36%), Positives = 200/382 (52%), Gaps = 33/382 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI D + + TTPD + + L+ +M+ G E ME SSH +A
Sbjct: 129 MGHKCGLLSTVCNYI-VDEAVPADHTTPDPIALNELLHRMVDAGCEYAFMECSSHAIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 188 RIGGLTFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDML--PKTAFAITNADDKNGMVM 245
Query: 121 IAQGNPDVPVV-TFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ V T ++ + KA + FE E VN E+ +G+ N+ N
Sbjct: 246 VQNTKATVKTYSTRSVADFKARIIECHFEGMYLE----VNGR----EVGVQFIGKFNVSN 297
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA + +G ED++ + + +V GR E I + + IVDYAHTPDAL +L++
Sbjct: 298 LLAVYGAAVMLGKKPEDVLVAMSTLHSVSGRLEPIHSPEGYTAIVDYAHTPDALENVLNA 357
Query: 240 VREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ E+ +ITV G G D+GKRPLM + A +SD I+TSDNP E+P DI++DML
Sbjct: 358 IHEVLDGKGEVITVCGAGGNRDKGKRPLMAQEAVKQSDRVIITSDNPRFEEPQDIINDML 417
Query: 298 AGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG+ M++ + + RR A+R A M ++GD++++AGKGHE
Sbjct: 418 AGLNAQQMKKVIAITD------------------RREAIRTACMMAKKGDVILIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDREESREAL 378
YQ K FDD E RE
Sbjct: 460 NYQEIKGVKHHFDDHEVVRECF 481
>gi|91200081|emb|CAJ73124.1| similar to UDP-N-acetylmuramyl tripeptide synthase [Candidatus
Kuenenia stuttgartiensis]
Length = 489
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 139/378 (36%), Positives = 212/378 (56%), Gaps = 24/378 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ YY G + + TTP++V +Q+ ++ ML+N V+EASSH L+ R
Sbjct: 129 GNKAGLIGTI-YYQLGSRIIPANETTPESVDIQSHLSDMLNNNIRYAVIEASSHALSQHR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V F AVFTNL+ +H+D+H + YR K KL R +D E V+N D ++ F
Sbjct: 188 LDGVHFRSAVFTNLSAEHLDYHENIKNYREEKIKLM-RGLD-ENASAVLNADHTSSKYFA 245
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ +V + +++ A V + + T+ L+ +P G I L G HN+YN L
Sbjct: 246 K--STVAQIVWYGIKDTSAHVRAEIINMGVNGTRFLLISPWGKEVIHLKLTGNHNVYNAL 303
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA G +G +E I +G+E ++ VPGR E +D Q F V++DYAHT DAL +L+++R
Sbjct: 304 AAATTGFCLGFDMEIIRKGLESLNNVPGRLEKLDYGQDFHVLIDYAHTHDALQVVLETLR 363
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
+A RRII V GC G+ D+GKR M IA SD+ +T+DNP +EDPL+I+ ++ G+
Sbjct: 364 GIAARRIILVFGCGGDRDKGKRAKMGHIAEKYSDLFWITNDNPRSEDPLNIIREIQRGIK 423
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
++ Y L R+VA+ A+ ++GD+VV+AGKGHE QI
Sbjct: 424 R---------DSCYKVQLD----------RKVAIEEALLEAKKGDVVVIAGKGHERCQIL 464
Query: 362 GDKKEFFDDREESREALQ 379
DK FDD E ++ L
Sbjct: 465 KDKSIPFDDCEVVKQVLS 482
>gi|260591740|ref|ZP_05857198.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella veroralis F0319]
gi|260536024|gb|EEX18641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella veroralis F0319]
Length = 485
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 200/382 (52%), Gaps = 36/382 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D + + TTPD + + L+A M+ G E ME SSH +
Sbjct: 129 FGYKVGLLSTVCNYID-DKAIPADHTTPDPIELNQLLADMVAAGCEYAFMECSSHAIHQH 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R +DF A+FTNLTRDH+D+H T E YRNAK F + + + N DD N
Sbjct: 188 RIGGLDFTGAIFTNLTRDHLDYHKTFENYRNAKKMFFDGL--SKHAFAITNADDKNG--M 243
Query: 121 IAQGNPDVPVVTFA---MENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
I N + T++ M + +A + FE E E+ +G+ N+
Sbjct: 244 IMVQNTKATIKTYSTKRMADFRAKILECHFEGMYLEIDG--------KEVGVQFIGKFNV 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA +G ++I+ + + +V GR E I + F IVDYAHTPDAL +L
Sbjct: 296 SNLLAVYGAAKMLGKSTDEILLALSTLKSVNGRLEPIQSPEGFTAIVDYAHTPDALENVL 355
Query: 238 DSVRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
++ ++ + IITV G G D+GKRPLM + A +SD ILTSDNP +EDP I++
Sbjct: 356 TAIHDVLDNKGGHIITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNPRDEDPQAIIN 415
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
DM+AG+ T ++ + L + D R+ A+R A M + GD+++VAGKG
Sbjct: 416 DMMAGLDATQRKKV----------------LNIVD-RKEAIRTAAMMAKRGDVILVAGKG 458
Query: 355 HETYQIEGDKKEFFDDREESRE 376
HETYQ K FDD E RE
Sbjct: 459 HETYQEINGVKHHFDDHEVIRE 480
>gi|398339245|ref|ZP_10523948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Leptospira kirschneri serovar Bim str. 1051]
Length = 506
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 208/383 (54%), Gaps = 28/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ G++ ++ GD +++ TTPDA + ++ +M G V MEASSHGL LGR
Sbjct: 143 GINCGLIGTIGVKF-GDRVIDTGYTTPDASSLNLILKQMKEEGITTVFMEASSHGLKLGR 201
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF- 120
+ + VFTNLT+DH+DFH E+Y +K +LF + + V++ PN +
Sbjct: 202 MNGISIRAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDFSKSAFAVLDYSAPNGSKLY 261
Query: 121 --IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILE-ISSGLLGRHNI 177
I PD+P+ +KK V+ + L+L T +N P + IS+ LLG N+
Sbjct: 262 HKILNRFPDLPINVLDGIDKKWKVNDI--SLNLQGTYYTLNLPENRKQKISTNLLGSFNV 319
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRL 236
N A G+ +G LE + ++++ +PGR +++ +++ +VDYAHTPDAL +
Sbjct: 320 RNTALAFLTGVGIGLDLEKMSNSLKKIPQIPGRFQIVYSRDRSRMAVVDYAHTPDALENI 379
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ SVR+ P+R+IT+ GC G+ DR KRP M +IA + SD ILTSDNP E P ILD++
Sbjct: 380 IRSVRDSQPKRLITLFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEI 439
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGH 355
G +D+ P L ++ R A+ ++ EG ++VAGKGH
Sbjct: 440 QTGFS-----------SDFVP--------LLREVDRAKAIAEGISCLPEGGCLLVAGKGH 480
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E YQI G +K F D EE ++A
Sbjct: 481 EEYQIIGKEKRHFSDVEEVQKAF 503
>gi|427714466|ref|YP_007063090.1| UDP-N-acetylmuramyl tripeptide synthetase [Synechococcus sp. PCC
6312]
gi|427378595|gb|AFY62547.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. PCC
6312]
Length = 497
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 137/357 (38%), Positives = 195/357 (54%), Gaps = 27/357 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A + G + +ME SSH LA GR +F AVFTNLT+DH+D+H
Sbjct: 159 TTPFAVTLQGQLATAVQAGAKVGIMEVSSHSLAQGRTWGCEFTAAVFTNLTQDHLDYHKD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENK-KADVHP 144
E+Y AKA LF + + R ++N DDP + + D ++ K +AD+
Sbjct: 219 LEDYFAAKALLFEE--NYLKGRAMINGDDPYGQRLLRKLGQDQ---AWSYRTKGEADLWA 273
Query: 145 LKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEV 204
+ +++TP G +S L+G+ N+ N+LAA+ VG+ +G L ++ + +
Sbjct: 274 TDLQYRADGVSGIIHTPKGTRAFNSPLVGQFNVENLLAALGVGLHLGLDLAGMLASLPQF 333
Query: 205 DAVPGRCELI--DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGK 262
VPGR + + Q VIVDYAHTPD+L LL + R P ++I V GC G+ DR K
Sbjct: 334 PGVPGRMQQVKVSPAQDISVIVDYAHTPDSLENLLKAARPFIPGQMICVFGCGGDRDRSK 393
Query: 263 RPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNG 322
RP M KIA D +D ++TSDNP E P IL+D+L G+ T+ + E D
Sbjct: 394 RPQMGKIAADLADQVVVTSDNPRTEYPQGILEDILTGIEPTINPLV---EAD-------- 442
Query: 323 HRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
R A+ A+ + GD VV+AGKGHE YQI G +K FDDREE+ AL+
Sbjct: 443 --------RHQAILDAILQAQPGDGVVIAGKGHEDYQILGTEKIHFDDREEATAALK 491
>gi|334134006|ref|ZP_08507541.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Paenibacillus sp. HGF7]
gi|333608514|gb|EGL19811.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Paenibacillus sp. HGF7]
Length = 495
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 148/384 (38%), Positives = 206/384 (53%), Gaps = 25/384 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG+ ++S I G + RTT +A +Q M GT+ VME SSH L LGR
Sbjct: 127 GFRTGLTGTISAKI-GSKFIPMERTTMEASDLQRTFRLMADEGTDYCVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP------ERHRKVVNIDDP 115
V F VFTNLT+DH+D+H T ++Y AK LFSRM + ++ V+N DDP
Sbjct: 186 VKGVRFRGGVFTNLTQDHLDYHETMDKYEAAKGLLFSRMGNEFTGDAGDKQYAVLNADDP 245
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+A + +V +T+ + N+ DV ++ T+ V + G + L+G
Sbjct: 246 SAERLAKLTSAEV--ITYGV-NRDCDVKATNIRITAKGTEFDVVSFAGTEPMRMKLVGLF 302
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YN LAA++V +A G L I + + V GR E++DE Q F V+VDYAHTPD L
Sbjct: 303 NVYNALAAISVSLAEGLSLSRIRESLGSMPGVDGRMEIVDEGQEFLVLVDYAHTPDGLRN 362
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L S+RE A RI V GC G+ DR KRPLM K+ + SD +TSDNP EDP IL D
Sbjct: 363 ALGSIREFAQGRIKCVFGCGGDRDRTKRPLMGKVTGELSDDVYVTSDNPRTEDPGMILLD 422
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
++ G+ + +Y +L + R A++ A+ D+V++AGKGH
Sbjct: 423 IVPGLVEAGVDESRY-------------KLLVD--RPEAIQKAIEEAGPQDVVLIAGKGH 467
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQ K FDDR +R AL+
Sbjct: 468 ETYQDIAGVKHDFDDRLIARAALR 491
>gi|291571420|dbj|BAI93692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Arthrospira platensis NIES-39]
Length = 498
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 147/356 (41%), Positives = 204/356 (57%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q+ +A + G + VME SSH L GR F +AVFTNLT+DH+D+H T
Sbjct: 161 TTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGCPFQVAVFTNLTQDHLDYHPT 220
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
++Y AKA LFS D + + ++N DD +A+ D V ++++ + AD+
Sbjct: 221 MDDYFEAKALLFSD--DYLQGKAIINADDDYGKKLMARLGGDR-VWSYSVSDPSADIWAD 277
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
Q +++TP G S L+G++N+ N+LAA+ G+A+G L +V +
Sbjct: 278 SLVYQPTGIQGVLHTPMGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDCLPAFG 337
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I EQ VIVDYAHTPD+L LL + R P R+I V GC G+ DR KR
Sbjct: 338 GVPGRMERVQISPEQNITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKR 397
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA D SD+ ++TSDNP EDP IL D+LAG+ D+ P+ G
Sbjct: 398 PKMGKIAADLSDLAVVTSDNPRTEDPDRILQDVLAGI------------PDHVKPIVIGD 445
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++R+AL+
Sbjct: 446 -------RAKAIRTAIDEAQPGDGVLIAGKGHEDYQILGTEKVHFDDREQARDALK 494
>gi|345017943|ref|YP_004820296.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033286|gb|AEM79012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Thermoanaerobacter wiegelii Rt8.B1]
Length = 483
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 138/375 (36%), Positives = 208/375 (55%), Gaps = 27/375 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I GD + S TTP+++ +Q L + M++ G + VVME SSH LAL R
Sbjct: 130 KVGLVGTIQNMI-GDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALNRVD 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E +FDIAVFTNL++DH+DFH EEY K KLF + V+NIDD ++ I
Sbjct: 189 ECEFDIAVFTNLSQDHLDFHQNMEEYAKTKGKLFKMA----KSASVINIDDKYSSMMIES 244
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
V+T+ +++ A V SL + V EIS + G ++YN LAA
Sbjct: 245 SKA--KVLTYGIKD-FAYVMAKDIRNSLSGVKFKVQIEDKKEEISLKIPGIFSVYNALAA 301
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+ V +G L + + +V V GR EL++ + F VI+DYAHTPD + ++++++E
Sbjct: 302 ITVADFLGISLRSVREALSQV-TVKGRFELVETGKDFYVIIDYAHTPDGIQNIMEALKEY 360
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
R I + G G+ D+ KRPLM ++A +D ILTSDNP +EDP +I+ + G+ T
Sbjct: 361 KTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEDPREIISQIEEGIKKT 420
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
N Y + N R+ A+ A+ ++ D++++AGKGHETYQI GD
Sbjct: 421 ---------NCPYVVIEN---------RKEAISYALTNAQKDDVIILAGKGHETYQIIGD 462
Query: 364 KKEFFDDREESREAL 378
K FD+RE +E L
Sbjct: 463 KVIHFDEREIVKEIL 477
>gi|298244173|ref|ZP_06967979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer
DSM 44963]
gi|297551654|gb|EFH85519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer
DSM 44963]
Length = 507
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 136/384 (35%), Positives = 217/384 (56%), Gaps = 22/384 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G RTGM+++ ++ ++G + R +T +A+ +Q + KM+ V+E++SHGL L
Sbjct: 136 GRRTGMMTTANFKLNGQEWANATRQSTLEALEIQEFLRKMVEMQATHAVIESTSHGLELQ 195
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPER-----HRKVVNIDDP 115
R FD+ V TN+T +H+DFH T + YR AKA+LF M+DPE+ +RKV ++
Sbjct: 196 RVRGCAFDVGVVTNITHEHLDFHKTLDAYRRAKARLFE-MLDPEQDKGQGYRKVAILNKD 254
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+++ + + VP++ + +E A V + L T + P +I + L+GR
Sbjct: 255 DSSYEVLKPYCRVPILDYGIETDAA-VRAVDLHLQASRTAFRLILPDAECQIETPLIGRF 313
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+ N LAA+A + G PL+ I + + + VPGR E IDE+Q F VIVDYAHT D+L +
Sbjct: 314 NVSNCLAAIATAYSQGIPLDVITQTLATIKGVPGRMEHIDEKQNFSVIVDYAHTADSLQK 373
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L +R + +++ V G AGE DR KRP+M +A SD ++T ++P +ED IL +
Sbjct: 374 VLAILRPVTTGKLMVVFGSAGERDRQKRPVMGSVAAQMSDFFVITDEDPRDEDRESILRE 433
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ G ++ K +D+ L + D RR A+ A + + GD V++AGKGH
Sbjct: 434 IAVGA----EQAGKQEGSDF---------LCIAD-RREAIATAFSRAQPGDTVLLAGKGH 479
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
E I G K +DDR+ +RE L+
Sbjct: 480 EQSIIIGRDKLPWDDRQVAREELR 503
>gi|271964369|ref|YP_003338565.1| UDP-N-acetylmuramyl tripeptide synthetase [Streptosporangium roseum
DSM 43021]
gi|270507544|gb|ACZ85822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum
DSM 43021]
Length = 514
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 207/381 (54%), Gaps = 26/381 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ V + G+ + TTP+A +Q L A M +G A ME SSH LALGR
Sbjct: 141 GHKAGLIGGVEIHA-GELRFTPKLTTPEASDLQGLFALMREHGVTAAAMEVSSHALALGR 199
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK-VVNIDDPNATSF 120
V +D+A+FTNL++DH+DFH ++Y KA+LF+ PE R VVNIDD +
Sbjct: 200 VDAVFYDVALFTNLSQDHLDFHKDLDDYFATKARLFT----PEMSRAGVVNIDDAHGREL 255
Query: 121 IAQGNPDVPVVTFAMENK-KADVHPLKFELSLFETQVLVNTPHGILEISS-GLLGRHNIY 178
+ G +P+ TF+ E +AD L + V P G+ E ++ L G N+
Sbjct: 256 L--GLSKIPMTTFSAEGALEADWRAADVRLGADGSSFRVVGPGGVEEDATVALPGPFNVA 313
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N L A+ + G PL V G+ + VPGR E + + F IVDY+H P A+ +L
Sbjct: 314 NALGAIVSLVEAGVPLRAAVAGVGTLAGVPGRMERVPGGEDFQAIVDYSHKPGAVESVLR 373
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
S+RE+ R+ V+GC G+ DRGKRP+M + A +DV ILTSDNP +EDPL IL +M+
Sbjct: 374 SLREVTTGRLTVVLGCGGDRDRGKRPMMGEAAARLADVAILTSDNPRSEDPLRILAEMMN 433
Query: 299 G-VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G +G + E H + D R A+ A++ GD+VVVAGKGHE
Sbjct: 434 GALGVSHDE--------------RAHVIIEPD-RAAAIDLAISRAGFGDVVVVAGKGHEQ 478
Query: 358 YQIEGDKKEFFDDREESREAL 378
Q GD+ FDDR+ +A+
Sbjct: 479 GQYVGDEVLPFDDRQVVADAI 499
>gi|297620596|ref|YP_003708733.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
86-1044]
gi|297375897|gb|ADI37727.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
86-1044]
gi|337292930|emb|CCB90929.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelateligase [Waddlia chondrophila 2032/99]
Length = 489
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 208/379 (54%), Gaps = 35/379 (9%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
+R G++ ++ Y I GD+ + TTPD L+ +M++ ++A VME +SH L GR
Sbjct: 129 MRPGLIGTIEYLI-GDHAAPATHTTPDVATNHKLLREMVNQRSQAAVMEVTSHALHQGRV 187
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK-------VVNIDDP 115
SE+ FD+ +FTNL++DH+D+H T + Y K KLF + DPE ++ VVNIDDP
Sbjct: 188 SEISFDVGIFTNLSQDHLDYHKTMDAYCEEKRKLFLSL-DPEAKKRKNYPKAAVVNIDDP 246
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI-LEISSGLLGR 174
I VP++T+ + N AD+ + +L E V G +S L+GR
Sbjct: 247 WFEKII--DGCRVPIITYGIANH-ADLRAEEIQLGA-EGIVYTLVHQGKRYPVSLPLIGR 302
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+ N LA + GI++G PL ++ ++ VPGR E + ++ + VD+AHTPDAL
Sbjct: 303 FNVLNSLATIGCGISLGVPLNKVLDAVKSFPPVPGRLEYVPNKRGLKLFVDFAHTPDALK 362
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L+ ++EL ++I V GC G+ D KR M +IA + SD+ I+TSDNP +E+P +I+D
Sbjct: 363 NVLNCLKELTQGKLIVVFGCGGDRDPYKRSQMGRIAEEFSDLAIITSDNPRSENPANIMD 422
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLH-DIRRVAVRCAVAMGEEGDMVVVAGK 353
++AG N F+ + RR A+ A+ D+V++AG+
Sbjct: 423 QIVAGF--------------------NDPSCFIKIEDRRKAIEEAIHRATPEDVVLIAGR 462
Query: 354 GHETYQIEGDKKEFFDDRE 372
GHE YQI + F DRE
Sbjct: 463 GHEPYQIFAHQTIEFKDRE 481
>gi|402846059|ref|ZP_10894378.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase, partial [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402268611|gb|EJU17978.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase, partial [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 433
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 142/374 (37%), Positives = 204/374 (54%), Gaps = 30/374 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G+LS+V YI D + + TTP A +Q L+++M G V ME SSH +A R
Sbjct: 77 GYRCGLLSTVCNYIE-DEAVPATHTTPSAPELQALLSRMQAAGCTHVFMEVSSHAMAQHR 135
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ V F +FTNLTRDH+D+HGT +EY AK F + D + + N DD N +
Sbjct: 136 AAGVHFRGGIFTNLTRDHLDYHGTVQEYLRAKKSFFDGL-DKDAF-ALTNADDKNGAVML 193
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
N ++A+ AD EL + TQ+ + +E+ L+G N+YN+L
Sbjct: 194 Q--NTRAHQYSYAL-RAAADYRAEILELYPYGTQLRIAG----VEVLVRLVGEFNVYNLL 246
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE-LIDEEQAFGVIVDYAHTPDALSRLLDSV 240
A A +G E+ +R + E+ AV GR + I E++ + +VDYAHTPDAL +L+++
Sbjct: 247 AVYAAATLLGMSKEEALRRLSELTAVDGRFQSFISEKRGYIAVVDYAHTPDALINVLETL 306
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
L + +II VVGC G+ DRGKRP+M A ++D ILTSDNP +EDP+ I+++M A
Sbjct: 307 SSLRSKGAKIICVVGCGGDRDRGKRPIMAHEAAVRADRVILTSDNPRSEDPVAIIEEMRA 366
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ P L + D R A+R A + GD+++VAGKGHETY
Sbjct: 367 GL----------------SPEELSRTLSITD-RAEAIRTATMLASAGDLILVAGKGHETY 409
Query: 359 QIEGDKKEFFDDRE 372
Q + FDDRE
Sbjct: 410 QEIAGVRHHFDDRE 423
>gi|188585925|ref|YP_001917470.1| UDP-N-acetylmuramyl tripeptide synthetase [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350612|gb|ACB84882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 534
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 133/382 (34%), Positives = 212/382 (55%), Gaps = 26/382 (6%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
++TGM+ +++ I D + + P TTP + + L+ ++ ++G V +E SSH ++ R
Sbjct: 170 VKTGMIGTINARID-DQEEKQPTTTPGPLELNELLGRIENSGASHVTLEVSSHAISQLRI 228
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFS-RMVDPERHRK----VVNIDDPNA 117
+ VD DIAV+TNL +H+D+H +EY+ K ++FS + + PE++ K V+N+DD A
Sbjct: 229 AGVDLDIAVYTNLAPEHLDYHTDMDEYKRTKGRIFSFQGLKPEKNDKPKLAVINLDDKYA 288
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + Q P V V+T + + A V + T++ + +P G + + L+G+ N
Sbjct: 289 SYMLEQ--PAVQVLTHGFD-ENAHVKGKIINTAETFTELKITSPWGNFTVKTPLIGKFNC 345
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+ V + G P I +E+ +PGR E ID Q F V+VD+AHT D+L +L
Sbjct: 346 YNLLAAITVALFEGIPASKIQTILEQPINIPGRFERIDLGQEFTVVVDFAHTTDSLQEVL 405
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
S+R++ +I V GC GE D+ KRP M + A+D D +TSDNP EDP I+ D+L
Sbjct: 406 QSLRQMVSGKIGVVFGCGGERDKSKRPKMGRAASDLGDKIFITSDNPRAEDPQKIVQDIL 465
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
+G + N ++ + R A+ ++ EGD V++AGKGHE
Sbjct: 466 SGC-----------------DVNNNEKIQIELDRAQAIEKSLNWAREGDAVLIAGKGHEA 508
Query: 358 YQIEGDKKEFFDDREESREALQ 379
Q K FDDRE +RE L+
Sbjct: 509 TQEINGKVINFDDREIAREKLK 530
>gi|262370678|ref|ZP_06064003.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii
SH046]
gi|381198020|ref|ZP_09905359.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter lwoffii WJ10621]
gi|262314478|gb|EEY95520.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii
SH046]
Length = 498
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 136/362 (37%), Positives = 202/362 (55%), Gaps = 32/362 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QN + G E +EASSHGL GR + + +IA ++NL+RDH+D+
Sbjct: 149 SSHTTLDALHLQNALHSYAKQGAEFASIEASSHGLEQGRLAGSEIEIAAYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVPVVTFAMENKKA 140
HGT E Y AK++LF P V+N+DD +A I AQ NP P + + A
Sbjct: 209 HGTLEVYAEAKSRLFQF---PSLKVAVINLDDEHAGVMIQAAQNNPAQPKILTYSTTQPA 265
Query: 141 DVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200
D + SL + T ++ + LLG NI N++A++ + G L D+V
Sbjct: 266 DYLVKNIQYSLTGANFSLCTAQAEYQVQNPLLGHFNIENLVASLIMVEQAGFDLADVVAT 325
Query: 201 IEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259
++ PGR ++I D+ + F +VDYAHTPDAL ++L +++ +++ V GC G+ D
Sbjct: 326 TAQLKGAPGRMQVIRDDARLF--VVDYAHTPDALVQVLSTLKRHVEQQLWAVFGCGGDRD 383
Query: 260 RGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPL 319
RGKRPLMT+ A + +DV +LTSDNP E+P I DM AG+ ++ +
Sbjct: 384 RGKRPLMTQAALNGADVVLLTSDNPRTENPEQIFADMKAGIDFSNR-------------- 429
Query: 320 PNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHETYQ-IEGDKKEFFDDREESRE 376
+H+I RR A++ AV + GD+VV+AGKGHE YQ IEG + +FDD E +
Sbjct: 430 ------VVHEIHDRREAIKFAVQQAQAGDIVVIAGKGHENYQEIEG-VRHWFDDVVEVQS 482
Query: 377 AL 378
A+
Sbjct: 483 AI 484
>gi|444914626|ref|ZP_21234768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cystobacter fuscus DSM 2262]
gi|444714485|gb|ELW55366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cystobacter fuscus DSM 2262]
Length = 506
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 143/380 (37%), Positives = 211/380 (55%), Gaps = 14/380 (3%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ Y + G + TTP+ + + ++ +M G E VVME SSH L R
Sbjct: 131 TGVIGTLGYKVGGQFH-ATANTTPEPLELHRILRQMADAGVETVVMEVSSHALIQERVHG 189
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
+ F A FTNLTRDH+D+H EEY AK KLF + + VVN DD AT +
Sbjct: 190 LTFKAAAFTNLTRDHLDYHKDLEEYFQAKRKLFLENLS-QGGVAVVNGDDTYATRIYNEL 248
Query: 125 NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAV 184
+ ++ +L + ++ TP G + + S LLG HN+ NILAA
Sbjct: 249 RGQKRMAWKFSRQGNGEISSADVSFTLQGIKGVLKTPAGDIPVKSRLLGAHNLENILAAA 308
Query: 185 AVGIAVG-APLEDIVRGIEEVDAVPGRCELID----EEQAFGVIVDYAHTPDALSRLLDS 239
+ + G A +D+ GIE + AVPGR E ++ + A V+VDYAHT DAL R L++
Sbjct: 309 GLALGAGFARRKDVQLGIERMGAVPGRMERVENHGPQAGAPAVLVDYAHTDDALKRALEA 368
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
R +A R+I V GC GE D GKRPLM A + +D++++TSDNP NE+P DI+ + G
Sbjct: 369 ARSMAKGRVIAVFGCGGERDEGKRPLMGTAAAEGADLSVVTSDNPRNENPDDIIAQVTPG 428
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDI-RRVAVRCAVAMGEEGDMVVVAGKGHETY 358
+ + G+ +G + +L + R+ A+ A+++ +E D+V++AGKGHETY
Sbjct: 429 LEKGGLRRISAGKAK------SGEKGYLVEADRKTAIETAISLAKEDDVVLIAGKGHETY 482
Query: 359 QIEGDKKEFFDDREESREAL 378
QI G +K FDDRE + AL
Sbjct: 483 QIIGTEKRAFDDREVAARAL 502
>gi|326391687|ref|ZP_08213212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
ethanolicus JW 200]
gi|392940679|ref|ZP_10306323.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
siderophilus SR4]
gi|325992265|gb|EGD50732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
ethanolicus JW 200]
gi|392292429|gb|EIW00873.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
siderophilus SR4]
Length = 483
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 138/375 (36%), Positives = 209/375 (55%), Gaps = 27/375 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I GD + S TTP+++ +Q L + M++ G + VVME SSH LAL R
Sbjct: 130 KVGLVGTIQNMI-GDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALNRVD 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E +FDIAVFTNL++DH+DFH EEY K+KLF + V+NIDD ++ I
Sbjct: 189 ECEFDIAVFTNLSQDHLDFHQNMEEYAKTKSKLFKMA----KSASVINIDDKYSSMMIES 244
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
V+T+ +++ A V SL + V EIS + G ++YN LAA
Sbjct: 245 SKA--KVLTYGIKD-FAYVMAKDIRNSLDGVKFKVQIEDKKEEISLKIPGIFSVYNALAA 301
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+ V +G L + + +V V GR EL++ + F VI+DYAHTPD + ++++++E
Sbjct: 302 ITVADFLGISLRSVREALSQV-TVKGRFELVETGKDFYVIIDYAHTPDGIQNIMEALKEY 360
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
R I + G G+ D+ KRPLM ++A +D ILTSDNP +EDP +I+ + G+ T
Sbjct: 361 KTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEDPREIISQIEEGIKKT 420
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
N Y + N R+ A+ A+ ++ D++++AGKGHETYQI GD
Sbjct: 421 ---------NCPYVVIEN---------RKEAISYALTNAQKDDVIILAGKGHETYQIIGD 462
Query: 364 KKEFFDDREESREAL 378
K FD+RE +E L
Sbjct: 463 KVIHFDEREIVKEIL 477
>gi|389797166|ref|ZP_10200209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhodanobacter sp. 116-2]
gi|388447540|gb|EIM03540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhodanobacter sp. 116-2]
Length = 502
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 145/383 (37%), Positives = 199/383 (51%), Gaps = 27/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R + ++ +HG E RTTPDAV VQ L+A+ V ME SSH L GR
Sbjct: 138 GHRAASIGTLGAGVHGQLH-EGERTTPDAVTVQELLAEFRAAQVSHVAMEVSSHALEQGR 196
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ VD+++A FTNLTRDH+D+HG+ E Y AKAKLF+ P V+NIDD
Sbjct: 197 VAAVDYEVAAFTNLTRDHLDYHGSMEAYGAAKAKLFAW---PGLRSAVINIDDTFGRELA 253
Query: 122 AQGNPDVPVVTFAM-ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
Q V + F+M ++ +A++ S + TP G + S L+GR N+ N+
Sbjct: 254 TQLLAGVQRLRFSMADDGEAEIAASAIVTSAEGLAFQLRTPWGTRAVRSHLIGRFNVANL 313
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELID--EEQAFGVIVDYAHTPDALSRLLD 238
LA V A+G P IV +E++ V GR + Q V+VDYAHTPDAL + L
Sbjct: 314 LAVVGCLGALGEPFARIVEALEQLQPVNGRMSRLGGVHGQPL-VVVDYAHTPDALEQALA 372
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+VR ++I V GC GE D GKRPLM IA +DV I+T DNP ED I+ ++A
Sbjct: 373 AVRAHCAGKLICVFGCGGERDAGKRPLMGAIAARLADVAIVTDDNPRGEDGDAIVAQIVA 432
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ + E D R +A+ A+ + GD+V++AGKGHETY
Sbjct: 433 GMAAARAMTV---ERD----------------RALAIADALQLAHAGDVVLIAGKGHETY 473
Query: 359 QIEGDKKEFFDDREESREALQYV 381
Q K FDD +R L+ +
Sbjct: 474 QDGATGKRPFDDLAVARAVLERI 496
>gi|385799624|ref|YP_005836028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Halanaerobium praevalens DSM 2228]
gi|309388988|gb|ADO76868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Halanaerobium praevalens DSM 2228]
Length = 486
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/366 (33%), Positives = 207/366 (56%), Gaps = 25/366 (6%)
Query: 15 IHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTN 74
I G L S RTTP+++ + A+M G + VME SSH L L R +DF+ A+FTN
Sbjct: 142 IIGSETLSSNRTTPESLDLYRYFAQMKKKGIKYGVMEVSSHALDLYRVESIDFEAAIFTN 201
Query: 75 LTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFA 134
L+ +H+D+H + + YR K++LFS++ P ++ ++N DDPN + +I + + ++++
Sbjct: 202 LSPEHLDYHQSLDNYREVKSRLFSQL-KPNKY-AIINADDPN-SEYIKK-KSEAQNLSYS 257
Query: 135 MENKKADVHPLKFELSLFETQVLVNTPHGIL-EISSGLLGRHNIYNILAAVAVGIAVGAP 193
++ K AD++ +F+L +T + T ++ L G NIYN LA V + +G
Sbjct: 258 LDTKSADLYTTEFKLK--QTGLEYKTGGKLVANFKLNLGGLFNIYNSLAVVLTALVLGIE 315
Query: 194 LEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVG 253
I + + + D+VPGR E+ID+ Q F +IVDYAHTPDA+ +L + + ++I + G
Sbjct: 316 KNIIKKALADFDSVPGRFEIIDQGQKFQLIVDYAHTPDAMENILKAALNIKKNKLIILFG 375
Query: 254 CAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEN 313
C G+ DR KRPLM +A +D I+++DNP +E P I ++ G
Sbjct: 376 CGGDRDRSKRPLMAALAEKYADSIIISNDNPRSESPTKIFKEIEKGFSSNFTN------- 428
Query: 314 DYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
Y +P+ R+ ++ A+ + ++ D+V++ G+GHE YQ+ ++K DDR+
Sbjct: 429 --YSIIPD---------RKKGIKAAIELAKKDDLVLLLGRGHEKYQVIKERKIELDDRQV 477
Query: 374 SREALQ 379
+ +AL+
Sbjct: 478 AIQALK 483
>gi|383811197|ref|ZP_09966667.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella sp. oral taxon 306 str. F0472]
gi|383356164|gb|EID33678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella sp. oral taxon 306 str. F0472]
Length = 485
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 201/382 (52%), Gaps = 36/382 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D + + TTPD + + L+A M+ G E ME SSH +
Sbjct: 129 FGYKVGLLSTVCNYID-DKAIPADHTTPDPIELNRLLADMVAAGCEYAFMECSSHAIHQH 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R +DF A+FTNLTRDH+D+H T E YRNAK F + + + N DD N
Sbjct: 188 RIGGLDFTGAIFTNLTRDHLDYHKTFENYRNAKKMFFDGL--SKHAFAITNADDKNG--M 243
Query: 121 IAQGNPDVPVVTFA---MENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
I N + T++ M + +A + FE E E+ +G+ N+
Sbjct: 244 IMVQNTKATIKTYSTKRMADFRAKILECHFEGMYLEIDG--------KEVGVQFIGKFNV 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA +G ++I+ + + +V GR E I + F IVDYAHTPDAL +L
Sbjct: 296 SNLLAVYGAAKMLGKKTDEILLALSTLKSVNGRLEPIQSPEGFTAIVDYAHTPDALENVL 355
Query: 238 DSVRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
++ ++ + IITV G G D+GKRPLM + A +SD ILTSDNP +EDP I++
Sbjct: 356 AAIHDVLDNKGGHIITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNPRDEDPQAIIN 415
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
DM+AG+ T ++ + L + D R+ A+R A M ++GD+++VAGKG
Sbjct: 416 DMMAGLDATQRKKV----------------LNIVD-RKEAIRTASMMAKKGDVILVAGKG 458
Query: 355 HETYQIEGDKKEFFDDREESRE 376
HETYQ K FDD E RE
Sbjct: 459 HETYQEINGVKHHFDDHEVIRE 480
>gi|257126832|ref|YP_003164946.1| UDP-N-acetylmuramyl tripeptide synthetase [Leptotrichia buccalis
C-1013-b]
gi|257050771|gb|ACV39955.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis
C-1013-b]
Length = 505
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 132/378 (34%), Positives = 207/378 (54%), Gaps = 34/378 (8%)
Query: 18 DNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTR 77
D + ++ TTP+++ + L+ K + G + +ME SSH L +GR + FD A+FTNLT+
Sbjct: 143 DEEFQTVNTTPESLELIKLIDKSVKKGADYFIMEVSSHALEIGRVDMLQFDSAIFTNLTQ 202
Query: 78 DHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSFIAQGNPDVPVVTFAME 136
DH+DFH T E Y NAK K+FS + + V+NIDD ++ D ++ ++
Sbjct: 203 DHLDFHKTMENYFNAKKKMFSMLRNNNSQGVGVINIDDEYGAKIYSE-KKDNNYISISVR 261
Query: 137 NKKADV---------HPLKFELSLFETQVLVNTPH------GILEISSGLLGRHNIYNIL 181
N+ AD+ + +K +++L L H G + L+G +N+YN+L
Sbjct: 262 NENADIWGDILNYTNNGMKIKINL--ENYLEKNKHNLKNSDGEYKFEINLIGEYNLYNVL 319
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
VA +++G + IV ++E+ VPGR E I E ++VD+AHT D L + +++
Sbjct: 320 GCVASALSLGIEMSVIVEKLKEMPVVPGRFETIKNELEARIVVDFAHTDDGLLNIGKTLK 379
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
++ +R+IT+ G G+ D KRP M K A SD ILTSDNP E+P++IL D+ G+
Sbjct: 380 QITDKRVITIFGAGGDRDHEKRPKMAKAAAKFSDYIILTSDNPRTENPVNILADIEKGLI 439
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
+ KY L + D R A++ + M E+ D +++AGKGHETYQI
Sbjct: 440 DEKYPFDKY--------------LIISD-RERAIKYGIKMLEKDDSLLIAGKGHETYQII 484
Query: 362 GDKKEFFDDREESREALQ 379
G +K FDDRE R+ L+
Sbjct: 485 GTEKTHFDDREIVRKILE 502
>gi|410941098|ref|ZP_11372897.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira noguchii str. 2006001870]
gi|410783657|gb|EKR72649.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira noguchii str. 2006001870]
Length = 506
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 209/383 (54%), Gaps = 28/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+R G++ ++ GD +++ TTPDA + ++ +M +G V MEASSHGL LGR
Sbjct: 143 GIRCGLIGTIGVKF-GDRVIDTGYTTPDASSLNLILKEMKEDGITTVFMEASSHGLKLGR 201
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF- 120
+ + VFTNLT+DH+DFH E+Y +K +LF + + V++ PN +
Sbjct: 202 MNGISIKAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDFSKSPFAVLDYSAPNGSKLY 261
Query: 121 --IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVN-TPHGILEISSGLLGRHNI 177
I PD+P+ T + K V + L+L T ++N + + +IS+ LLG N+
Sbjct: 262 QKILNRFPDLPINTLDGIDGKYKVSDI--SLNLQGTYYVLNLSENQKQKISTNLLGSFNV 319
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRL 236
N A GI +G LE + ++++ +PGR +++ +++++ +VDYAHTPDAL +
Sbjct: 320 RNTALAFLTGIGIGLDLEKMSNSLKKIPQIPGRFQIVYNKDRSKMAVVDYAHTPDALENI 379
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ SVR+ P+R+IT+ GC G+ DR KRP M +IA SD ILTSDNP E P ILD++
Sbjct: 380 IRSVRDSQPKRLITLFGCGGDRDRTKRPKMARIAEQLSDQVILTSDNPRTEKPEAILDEI 439
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGH 355
G G L ++ R A+ ++ EG ++VAGKGH
Sbjct: 440 QTG-------------------FSTGFSPLLREVDRAKAIVEGISCLPEGGCLLVAGKGH 480
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E YQI G +K F D EE ++A
Sbjct: 481 EEYQIIGKEKRHFSDVEEVQKAF 503
>gi|409993517|ref|ZP_11276655.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Arthrospira platensis str. Paraca]
gi|409935600|gb|EKN77126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Arthrospira platensis str. Paraca]
Length = 498
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 146/356 (41%), Positives = 203/356 (57%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q+ +A + G + VME SSH L GR F +AVFTNLT+DH+D+H T
Sbjct: 161 TTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGCPFQVAVFTNLTQDHLDYHPT 220
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
++Y AKA LFS D + + ++N DD +A+ D V ++++ + D+
Sbjct: 221 MDDYFEAKALLFSD--DYLQGKAIINADDDYGKKLMARLGGDR-VWSYSVSDPSTDIWAD 277
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
Q +++TP G S L+G++N+ N+LAA+ G+A+G L +V +
Sbjct: 278 SLVYQPTGIQGVLHTPMGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDSLPAFG 337
Query: 206 AVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I EQ VIVDYAHTPD+L LL + R P R+I V GC G+ DR KR
Sbjct: 338 GVPGRMERVKISPEQNITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKR 397
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA D SD+ ++TSDNP EDP IL D+LAG+ D+ P+ G
Sbjct: 398 PKMGKIAADLSDLAVVTSDNPRTEDPDRILQDVLAGI------------PDHVKPIVIGD 445
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++R+AL+
Sbjct: 446 -------RAKAIRTAINEAQPGDGVLIAGKGHEDYQILGTEKVHFDDREQARDALK 494
>gi|398342680|ref|ZP_10527383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Leptospira inadai serovar Lyme str. 10]
Length = 501
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 203/389 (52%), Gaps = 28/389 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G G++ +V G K ++ TTPDA +Q ++ +M G E V MEASSHGL L
Sbjct: 131 VGANCGIIGTVGVRFQGKKK-DTGYTTPDACSLQLILREMSDAGIEYVFMEASSHGLKLD 189
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS- 119
R V F VFTNLT+DH+DFH E+Y +K+ LF M V+++ P
Sbjct: 190 RTDGVRFFAGVFTNLTQDHLDFHPNMEDYLRSKSLLFQSMKSEPNAFGVLDLSSPGGLEM 249
Query: 120 --FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPH---GILEISSGLLGR 174
I + P++ + F +E+ ++ E SL T+ P G I + LLG
Sbjct: 250 HDLIRKLCPELKL--FVIEDGSGELKISNEEFSLQGTEYDFEIPSRWGGRARIHTNLLGG 307
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDAL 233
NI N A+ +G P ++ + + +PGR +L +++ +VDYAHTPDAL
Sbjct: 308 FNIRNTALALTTAFGLGWPRNSLLEALRSIPQIPGRFQLYYSPDRSRMAVVDYAHTPDAL 367
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L SVRE P+ +I + GC G+ DR KRP M +IA +D ILTSDNP E+P IL
Sbjct: 368 ENILKSVRESKPKELIVLFGCGGDRDRAKRPQMARIAERLADKVILTSDNPRTENPEAIL 427
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
D++ +G +L+ + R VA+R +++ EEG ++VAGK
Sbjct: 428 DEIQSGFSPGFAPFLREAD------------------RAVAIRRGISVLEEGGCLLVAGK 469
Query: 354 GHETYQIEGDKKEFFDDREESREALQYVD 382
GHE YQI G +K FDD EE ++A + +
Sbjct: 470 GHEDYQIIGKEKRHFDDGEEIQKAWLFTE 498
>gi|317129302|ref|YP_004095584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
cellulosilyticus DSM 2522]
gi|315474250|gb|ADU30853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
cellulosilyticus DSM 2522]
Length = 491
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 133/379 (35%), Positives = 214/379 (56%), Gaps = 28/379 (7%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ Y + D ++ TTP+++++Q + M+ G V ME SSH L LGR
Sbjct: 133 TGIIGTM-YMKYKDKEVAVNNTTPESLVLQKGFSTMVQEGVNVVTMEVSSHALELGRVHG 191
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM----VDPERHRKVVNIDDPNATSF 120
F++AVFTNL++DH+DFH T E Y AK LF+++ D + V+N DD T
Sbjct: 192 THFNVAVFTNLSQDHLDFHETMENYARAKGLLFAQLGNQFSDKSQPVAVLNRDDD--TFD 249
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ + P++++ ++ AD+ K +L T ++ + +S + G ++YN
Sbjct: 250 LLETMTAAPIISYGIKGN-ADLKASKIQLHEEGTSFNMSISNESCSVSMKMAGTFSVYNA 308
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA A G PL+ I + +D V GR E ++ E+ F VIVDYAHTPD+L +L+++
Sbjct: 309 LAAAAAAYVSGIPLQAIGESLSNMDGVAGRFERVELEEDFHVIVDYAHTPDSLKNVLETI 368
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
+E A ++ VVGC G+ D+ KRP M IA + SD LTSDNP +EDP+ IL DM +G+
Sbjct: 369 KEFAKGKVSVVVGCGGDRDKTKRPKMAAIAEELSDFVYLTSDNPRSEDPVSILKDMESGM 428
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ +++ + RR A+ A+ ++ +++++AGKGHETYQ
Sbjct: 429 KGS------------------SYKVIVE--RRDAIYEAIRQAKKDEVILIAGKGHETYQT 468
Query: 361 EGDKKEFFDDREESREALQ 379
G + FFDDR ++EA++
Sbjct: 469 IGKENHFFDDRLVAKEAVE 487
>gi|429213002|ref|ZP_19204167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Pseudomonas sp. M1]
gi|428157484|gb|EKX04032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Pseudomonas sp. M1]
Length = 488
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 134/378 (35%), Positives = 215/378 (56%), Gaps = 26/378 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G R G++ ++ H + LES + TTPDA+ +Q +A++ G AV ME SSHGL G
Sbjct: 127 GQRCGIVGTLGNGFH--DALESGKHTTPDALALQATLARLKQAGARAVAMEVSSHGLEQG 184
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + ++FD+AVFTNL+RDH+D+HGT E Y AKA+LF+ P +V+N+DD
Sbjct: 185 RVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFAW---PGLKCRVINLDDAFGRQL 241
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ +P ++ +++E+ A ++ + S + L+ TP G + S LLGR N+ N+
Sbjct: 242 AGETHPS-RLMGYSLEDASAFLYCREARFSDAGVEALLVTPKGEGVLRSSLLGRFNLSNL 300
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA V + + PL DI++ + ++ GR + + V+VDYAHTPDAL ++L ++
Sbjct: 301 LAVVGALLGLDYPLGDILKLLPQLQGTVGRVQRLGGGDKPLVVVDYAHTPDALEKVLLAL 360
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R A +++ + GC G+ DRGKRP+M ++A +D ++T DNP +ED I+DD+ A
Sbjct: 361 RPHAHGKLLCLFGCGGDRDRGKRPIMAQVAEQHADGVLVTDDNPRSEDSARIIDDIRA-- 418
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
G+ E +++ +P R A+ +A D+V++AGKGHE YQ
Sbjct: 419 GFARPEAVRF--------VPG---------RGQAIAELIAGASADDVVLLAGKGHEDYQE 461
Query: 361 EGDKKEFFDDREESREAL 378
+ F D +E+ +AL
Sbjct: 462 IAGVRHPFSDLQEAAKAL 479
>gi|282878015|ref|ZP_06286823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella buccalis ATCC 35310]
gi|281299850|gb|EFA92211.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella buccalis ATCC 35310]
Length = 482
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 138/377 (36%), Positives = 201/377 (53%), Gaps = 28/377 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G+LS+V +I G ++ + TTPD + + L+AKML G E V ME SSH +A
Sbjct: 129 LGHKCGLLSTVCNFIEG-QEIPADHTTPDPIELNELLAKMLAAGCEYVFMECSSHAIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 188 RIGGLTFTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDGL--PKSAFAITNADDKNGMVM 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N V T+++++ AD E + ++ E+ G+ N+ N+
Sbjct: 246 VQ--NTKASVKTYSIQS-MADFKARIIECHFQGMYLAIDGQ----EVGVQFTGKFNVSNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +G E+ + + + V GR + + + F IVDYAHTPDAL +L ++
Sbjct: 299 LAVYGAARMLGKQREETLIAMSTLHTVNGRMDTLQSPEGFTAIVDYAHTPDALKNVLLAI 358
Query: 241 RELAPR-RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
E+ + IITV G G D+GKRPLM K A SD I+TSDNP EDP DI++DMLAG
Sbjct: 359 HEVDGKGHIITVCGAGGNRDKGKRPLMAKQAVQLSDKVIITSDNPRFEDPQDIINDMLAG 418
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ Q+ + L + D R+ A+R A + ++ D+++VAGKGHETYQ
Sbjct: 419 LDAQDQKKV----------------LTIAD-RKEAIRTACMLAQKQDVILVAGKGHETYQ 461
Query: 360 IEGDKKEFFDDREESRE 376
K FDD+E R+
Sbjct: 462 EIKGVKHHFDDKEVLRD 478
>gi|427423982|ref|ZP_18914119.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-136]
gi|425699090|gb|EKU68709.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-136]
Length = 499
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 136/361 (37%), Positives = 197/361 (54%), Gaps = 29/361 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QN + + +EASSHGL GR + +IAV++NL+RDH+D+
Sbjct: 149 STHTTLDALQLQNALHEYAKQDATFASLEASSHGLEQGRLNGCAIEIAVYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMENKK 139
HGT E Y AKA LF V+N+DD +A I + NP P ++T+++
Sbjct: 209 HGTLEAYAEAKALLFRF---SSLKVAVINLDDEHAALMINAVKQNPAQPKILTYSLTQNT 265
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
AD + SL + +P G + S LLG N+ N++AA+ G LE +V
Sbjct: 266 ADYYITDLSYSLAGATFNLVSPQGSFAVQSPLLGHFNVENLVAALIAAEQAGFDLEPLVS 325
Query: 200 GIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258
+ ++ PGR ++I D E+ F +VDYAHTPDAL ++L +++ ++ V GC G+
Sbjct: 326 FVPKLIGAPGRMQVIRDGERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDR 383
Query: 259 DRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPP 318
DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 384 DRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFS--------------- 428
Query: 319 LPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E R A
Sbjct: 429 ---GHRMHEIHD-RREAIKFVAQQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVEVRSA 484
Query: 378 L 378
+
Sbjct: 485 I 485
>gi|124025177|ref|YP_001014293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prochlorococcus marinus str. NATL1A]
gi|166224783|sp|A2C0L8.1|MURE_PROM1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|123960245|gb|ABM75028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
str. NATL1A]
Length = 509
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 204/371 (54%), Gaps = 39/371 (10%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT AV +Q + K + G E ME SSH L+ R + DF+ A+FTNL+RDH+D+
Sbjct: 156 SKYTTTFAVPLQAKLRKAVQAGVEYGAMEVSSHALSQNRVAGCDFNGAIFTNLSRDHLDY 215
Query: 83 HGTEEEYRNAKAKLF-SRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKAD 141
H + E Y AKA LF S ++D + R V+NIDD + + N + EN +
Sbjct: 216 HDSMESYFEAKASLFRSHLIDDDGPRSVINIDDKWGSILAKELNKKCWTCSLK-ENSQIR 274
Query: 142 VHPLKFELSLFETQVL-------VNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPL 194
P +L + Q++ ++TP G+ S L+G N+ N+L A+ + + G PL
Sbjct: 275 EKP---DLYISNLQIMQDGYMGKLHTPFGVGNFISPLIGEFNLMNMLQAIGILVQRGLPL 331
Query: 195 EDIVRGIEEVDAVPGRCELIDEEQAFGV-------IVDYAHTPDALSRLLDSVRELAPRR 247
D++ + + VPGR +LI+ + F V IVDYAHTPD L L + R L +R
Sbjct: 332 NDLLEALNKFPGVPGRMQLINMD-GFKVKDGYPLVIVDYAHTPDGLQNALIASRSLTKKR 390
Query: 248 IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEY 307
+I V GC G+ D+GKR M ++A +D ++TSDNP EDP++I+ D+ G+ T+
Sbjct: 391 LICVFGCGGDRDKGKRSKMGEVAAKFADYIVVTSDNPRQEDPIEIIKDIQKGI--TIDSE 448
Query: 308 LKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEF 367
+ + R +A++ A+A ++ D+V++AGKGHE YQI D+ +
Sbjct: 449 IS-----------------VEPERSIAIQFAIAKAKKNDVVLIAGKGHEDYQILKDQTIY 491
Query: 368 FDDREESREAL 378
FDDRE++R+AL
Sbjct: 492 FDDREQARKAL 502
>gi|281424947|ref|ZP_06255860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella oris F0302]
gi|281400791|gb|EFB31622.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella oris F0302]
Length = 483
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 141/388 (36%), Positives = 205/388 (52%), Gaps = 43/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D ++ + TTPD + + L+AKM+ G E ME SSH +
Sbjct: 129 FGHKVGLLSTVCNYID-DVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F A+FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 188 RIGGLKFAGALFTNLTRDHLDYHKTFENYRNAKKAFFDGL--PKDAFAITNADDKNG--M 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
I N V T+++ L+ F ++L G+ E+ +G+
Sbjct: 244 IMVQNTKATVKTYSIRT-----------LADFRARILECHFEGMYLEIDGREVGVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+ N+LA I +G ED++ + + +V GR E I + F IVDYAHTPDAL+
Sbjct: 293 FNVSNLLAVYGAAIMLGKKPEDVLLVLSTLHSVNGRLEPIHSPEGFTAIVDYAHTPDALA 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ E+ +ITV G G D+GKRPLM + A +SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHEVLDGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVG-WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ + + R+ A+R A M ++GD+V+VA
Sbjct: 413 INDMLAGLNEQQMRKVISIVD------------------RKEAIRTACMMAQKGDVVLVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHETYQ K FDD+E E +
Sbjct: 455 GKGHETYQEIKGVKHHFDDKEVLHEIFK 482
>gi|421855206|ref|ZP_16287586.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|403189217|dbj|GAB73787.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 499
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 203/363 (55%), Gaps = 27/363 (7%)
Query: 21 LESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM 80
+ S TT DA+ +QN + G V +EASSHGL GR + + +IA+++NL+RDH+
Sbjct: 147 VASTHTTLDALQLQNALHDFSSQGANFVALEASSHGLEQGRLNGCEIEIAIYSNLSRDHL 206
Query: 81 DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMEN 137
D+HGT Y +AKA LF V+N+DD A + AQ NP P ++T+++++
Sbjct: 207 DYHGTLAAYADAKALLFKFAT---LRSAVINLDDDYAPVMLETAQANPARPKILTYSLQH 263
Query: 138 KKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDI 197
+AD SL + + P G + S LLG+ NI N++A++ G L DI
Sbjct: 264 PEADYRVSDIHYSLKGAKFKLIAPTGEYVVQSPLLGQFNIENLVASLIAVEQAGFKLSDI 323
Query: 198 VRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAG 256
+ + ++ PGR ++I D E+ F +VDYAHTPDAL+++L +++ ++ + GC G
Sbjct: 324 LATVPQLKGAPGRMQVIRDAERLF--VVDYAHTPDALTQVLVTLKRHVQNQLWAIFGCGG 381
Query: 257 ESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYY 316
+ DRGKRPLMT+ A + +D ILTSDNP E P I DM GV +G
Sbjct: 382 DRDRGKRPLMTQAALNDADPVILTSDNPRTESPEQIFADMKNGV--------DFG----- 428
Query: 317 PPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESRE 376
N H + D RR A++ AV + GD+VV+AGKGHE YQ + +FDD E +
Sbjct: 429 ----NHHVQEIRD-RREAIKYAVQQAQAGDIVVIAGKGHENYQEIDGVRHWFDDVVEVQS 483
Query: 377 ALQ 379
AL+
Sbjct: 484 ALE 486
>gi|339444538|ref|YP_004710542.1| UDP-N-acetylmuramyl tripeptide synthase [Eggerthella sp. YY7918]
gi|338904290|dbj|BAK44141.1| UDP-N-acetylmuramyl tripeptide synthase [Eggerthella sp. YY7918]
Length = 501
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 202/380 (53%), Gaps = 25/380 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ +V I GD + ++ TTP++ +Q + A+M + V ME SSH L L R
Sbjct: 132 GKRTGVIGTVGVRI-GDVQEKTAHTTPESPDLQQMFARMRDERCDVVAMEVSSHALDLER 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
F + F+NLT+DH+D+H T E Y AKA+LFS+ R+V+ IDD +
Sbjct: 191 TWHTKFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPA---RRVICIDDKWGRELL 247
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ + + + A +HP++ + T V ++ L+G+ N+ NI+
Sbjct: 248 RRCSAAEDNIITTGFDTAAQIHPIEVNYAPTHTTVTLDVRGSRFSFDYPLVGKFNVENIM 307
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDE--EQAFGVIVDYAHTPDALSRLLDS 239
A +G+ +G E IVR + E +PGR E + + V VDYAHTPDAL + L S
Sbjct: 308 CAFGIGLQLGYTPELIVRALGEAPQIPGRLERVSAAYDGGVSVFVDYAHTPDALEKALAS 367
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+ L P R I V GC G+ D KR +M K A +D ++TSDNP EDPL I+DD+++G
Sbjct: 368 IMALTPGRTICVFGCGGDRDASKRSIMGKAAL-SADHVVVTSDNPRTEDPLAIIDDIVSG 426
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+G+ G D P RR A+ A++ + GD V++AGKGHE YQ
Sbjct: 427 MGFGA------GRFDVEPD------------RRAAIARALSQAQAGDSVLIAGKGHEDYQ 468
Query: 360 IEGDKKEFFDDREESREALQ 379
+ GD+ FDDR + E LQ
Sbjct: 469 LVGDQVLSFDDRVVAAEELQ 488
>gi|345569810|gb|EGX52636.1| hypothetical protein AOL_s00007g419 [Arthrobotrys oligospora ATCC
24927]
Length = 525
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 139/364 (38%), Positives = 202/364 (55%), Gaps = 27/364 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP ++++Q ++++ L G EAVVME SSHGLAL R E FD A+FTNLT DH+DFH T
Sbjct: 170 TTPRSLVLQGILSRFLEAGVEAVVMEVSSHGLALQRVVECAFDAAIFTNLTEDHLDFHKT 229
Query: 86 EEEYRNAKAKLFSRM----VDPERHRKVVNIDDPNATSFIAQ-GNPDVPVVTFAMENKKA 140
E Y AK LFS + + +R ++N DD + I +T+++ + +
Sbjct: 230 MEGYWAAKMLLFSDIAKYSMQFKRFAAIINTDDEYGRNLIKDVVEASYEYITYSV-TENS 288
Query: 141 DVHPLKFELSLFETQVLVNT---PHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDI 197
D+ ++S + +N + ++ L+GR N+YN LAA++VG + P +
Sbjct: 289 DIKAEDIKISNRKIGFTINKYCEDDSSVPFTAPLVGRFNVYNCLAAISVGQHLKIPPSSL 348
Query: 198 VRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGE 257
G+ A GR E IDE Q+F VIVDYA+ PD L ++L +++EL R+I V G +
Sbjct: 349 QDGLNCAKAPTGRMEFIDEGQSFNVIVDYAYNPDGLEKVLTALKELVTGRLICVFGASDH 408
Query: 258 --SDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDY 315
SDR KR M +A +D+ ILTSDNP EDP I++D+L GV +E + E D
Sbjct: 409 RYSDRLKRSSMGSVAVGLADLVILTSDNPGFEDPQGIVEDILVGVRNMRKESITRVEID- 467
Query: 316 YPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESR 375
RR A++ A+ M EEGD V+ AGK E YQI G++K FD+R R
Sbjct: 468 ---------------RREAIKLALEMAEEGDTVLFAGKAQEEYQILGEEKTAFDERGIVR 512
Query: 376 EALQ 379
+ L+
Sbjct: 513 DTLR 516
>gi|189464535|ref|ZP_03013320.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM
17393]
gi|189438325|gb|EDV07310.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides intestinalis DSM 17393]
Length = 482
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 136/384 (35%), Positives = 204/384 (53%), Gaps = 43/384 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M +G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DQAIPTEHTTPDPITLNQLLGQMADSGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKGAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ ++L + G+L E++ +GR
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGKILESHFEGMLLDFNNHELAVHFIGR 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + + + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLQPVAGRFDAVRSPKGITAIVDYAHTPDALI 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + +IITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKIITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGW-TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ MQ+ + + RR A++ A + + GD+++VA
Sbjct: 413 INDMLAGLDKDDMQKTISIAD------------------RREAIKTACMLAQPGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESR 375
GKGHE YQ K FDD+EE +
Sbjct: 455 GKGHENYQEVKGVKHHFDDKEELK 478
>gi|390943249|ref|YP_006407010.1| UDP-N-acetylmuramyl tripeptide synthetase [Belliella baltica DSM
15883]
gi|390416677|gb|AFL84255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Belliella baltica DSM
15883]
Length = 486
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 140/392 (35%), Positives = 210/392 (53%), Gaps = 44/392 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG G+LS+V I G + S TTPDA+ +Q+L+ +M+ G MEASSH +
Sbjct: 130 MGYVVGLLSTVENKISG-KVIPSTHTTPDALSMQSLLKEMVDEGCTHCFMEASSHAIVQE 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + AVFTN+T DH+D+HGT +EY AK KLF + P+ ++N DD A
Sbjct: 189 RTAGIKLTGAVFTNITHDHLDYHGTFDEYIKAKKKLFDEL--PKDAFALINADDKRAMVM 246
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFEL-SLFETQVLVNTPHGI-LEISS-----GLLG 173
++N KA + + F+ ++L N G+ L+I+ ++G
Sbjct: 247 --------------LQNTKATRQSFGLKYPADFKAKILTNALEGLELDINGRQVWFRMIG 292
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
N YN+L +A + +G E+I+ + +V+ GR + I IVDYAHTPDAL
Sbjct: 293 EFNAYNLLGVLATAVLLGEDEEEILMQLSKVEGAQGRFDKI-AIAGITAIVDYAHTPDAL 351
Query: 234 SRLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
+L +++ + ++IT+VGC G D+ KRP+M KIAT SD ILTSDNP +EDP+
Sbjct: 352 ENVLKTIQGVRSGGEQVITIVGCGGNRDKTKRPIMAKIATQLSDKVILTSDNPRDEDPMT 411
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL +M AG+ P+ + + D RR A++ A M +GD++++A
Sbjct: 412 ILKEMEAGIN----------------PVDFKKTMIIED-RREAIKTAGIMANKGDIILIA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQYVDE 383
GKGHETYQ K FDDR +E L +++
Sbjct: 455 GKGHETYQEIKGVKHLFDDRAVVKELLNLLNQ 486
>gi|288925516|ref|ZP_06419449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella buccae D17]
gi|402307311|ref|ZP_10826337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella sp. MSX73]
gi|288337732|gb|EFC76085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella buccae D17]
gi|400378825|gb|EJP31676.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella sp. MSX73]
Length = 483
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 198/380 (52%), Gaps = 33/380 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI D + + TTPD + + L+ +M+ G E V ME SSH +A
Sbjct: 129 MGHKVGLLSTVCNYIE-DEAIPADHTTPDPIELNELLDRMVKAGCEYVFMECSSHAIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 188 RIGGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGL--PKDAFAITNADDKNGMVM 245
Query: 121 IAQGNPDVPVV-TFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + T M + +A + FE E H E+ +G+ N+ N
Sbjct: 246 VQNCKATIKTYSTRTMADFRARIIECHFEGMYLEVD-----GH---EVGVQFIGKFNVSN 297
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA I +G ED++ + + +V GR E I + I+DYAHTPDAL +L +
Sbjct: 298 LLAVYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIRSAEGVTAIIDYAHTPDALENVLSA 357
Query: 240 VREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ E+ R+ITV G G D+GKRPLM A +SD I+TSDNP E+P DI++DML
Sbjct: 358 IHEVLNGKGRVITVCGAGGNRDKGKRPLMAVEAVKQSDKVIITSDNPRFEEPQDIINDML 417
Query: 298 AGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG+ M++ + + R+ A+R A M ++GD+V++AGKGHE
Sbjct: 418 AGLNAQQMKKVVSIVD------------------RKEAIRTACMMAQKGDVVLIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDREESRE 376
YQ K FDD+E RE
Sbjct: 460 DYQEIKGVKHHFDDKEVVRE 479
>gi|373501063|ref|ZP_09591430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella micans F0438]
gi|371950654|gb|EHO68508.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella micans F0438]
Length = 488
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 141/375 (37%), Positives = 204/375 (54%), Gaps = 30/375 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G +TG++S+V YI G +L + TTPD + + L+A+M+ +G E ME SSH +
Sbjct: 129 FGYKTGLISTVCNYIDG-RELPADHTTPDPIELNKLLAEMVDSGCEYAFMECSSHAIHQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNL+RDH+D+H T E YR+AK F + P+ + N+DD N F
Sbjct: 188 RIGGLAFAGGIFTNLSRDHLDYHKTFENYRDAKKMFFDEL--PKSAFALTNVDDKNGM-F 244
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ Q N V T+++ ++ AD E FE L H E+ +G+ N N+
Sbjct: 245 MMQ-NTRAAVKTYSL-SRMADFRARILECH-FEGMYLDIDRH---EVGVQFIGKFNASNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA A + +G +D++ + + +V GR E I + F IVDYAHTPDAL +L ++
Sbjct: 299 LAVYAAAVLLGKETDDVLLALSTLKSVNGRLEPIASPEGFTAIVDYAHTPDALRNVLAAI 358
Query: 241 RELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
E+ + +ITV G G D+GKRPLM + A S+ ILTSDNP +EDP I+DDML
Sbjct: 359 HEVLDGKGGNVITVCGAGGHRDKGKRPLMAQEAARMSNKVILTSDNPRDEDPQAIIDDML 418
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+ ++ + + D RR A+R A M ++GD+V+VAGKGHET
Sbjct: 419 KGLDAQKRK----------------KTITITD-RREAIRTACLMAQKGDVVLVAGKGHET 461
Query: 358 YQIEGDKKEFFDDRE 372
YQ K FDD E
Sbjct: 462 YQEINGVKHHFDDHE 476
>gi|392402511|ref|YP_006439123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Turneriella parva DSM 21527]
gi|390610465|gb|AFM11617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Turneriella parva DSM 21527]
Length = 513
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 198/362 (54%), Gaps = 37/362 (10%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEA----VVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMD 81
TTPD V +Q+ MLH G + +E SSHGLA GR ++F I +FTNLT+DH+D
Sbjct: 166 TTPDTVTLQS----MLHQGQKQKALYACLETSSHGLAQGRLEGINFQIGIFTNLTQDHLD 221
Query: 82 FHGTEEEYRNAKAKLFSRMVDPERHR------KVVNIDDPNATS---FIAQGNPDVPVVT 132
+H E Y AK +LF M+ R + V+ IDD ++ P PV++
Sbjct: 222 YHRNMESYYRAKRRLFEYMLFSSRKQPESAKGAVICIDDDYGRRLYLWLKSQTPSFPVIS 281
Query: 133 FAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGA 192
++ +K AD + E + ++ I + LLGR N+ N+ +A + +G
Sbjct: 282 LSLRDKTADAYITDVEATFDGYSCVLVFAQKSYFIKTRLLGRFNLMNLSSAFLALLCLGF 341
Query: 193 PLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVV 252
E+ + I++V+ VPGR E++ ++ VI+DYAH+PDAL+++L++ +EL P R+I +
Sbjct: 342 GTEEALAAIQQVEPVPGRFEVLRGKEQRAVIIDYAHSPDALAKVLETAQELTPARVIGLF 401
Query: 253 GCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGE 312
GC G+ D+ KRP M ++A+ SD+ ILT+DNP +EDP +I++DM G
Sbjct: 402 GCGGDRDKDKRPQMAEVASLHSDLCILTNDNPRSEDPKNIIEDMRKG------------- 448
Query: 313 NDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDRE 372
L L + D R A+R + + ++V+AGKGHE YQI G+K F DR+
Sbjct: 449 ------LKTARYLVISD-REKAIRAGLQILGPRQVLVIAGKGHEDYQIIGNKTLHFSDRD 501
Query: 373 ES 374
+
Sbjct: 502 TA 503
>gi|418292506|ref|ZP_12904444.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379063927|gb|EHY76670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 487
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 209/385 (54%), Gaps = 24/385 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G G++ ++ HG +L TTPDA+ VQ +A + G AV ME SSHGL G
Sbjct: 126 LGEPCGIIGTLGTGFHGHLQL-GRHTTPDAIGVQATLANLKQEGARAVAMEVSSHGLDQG 184
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + +DFD+AVFTNL+RDH+D+HGT E Y AKA+LF P +V+NIDD
Sbjct: 185 RVAALDFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFDV---PGLRCRVINIDD-GFGRV 240
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+A D +VT+++E++ A + LS + TP G + S LLGR N+ N+
Sbjct: 241 LAGEERDSRLVTYSLEDRSAYLFCADARLSDDGIHARLITPQGERSMRSPLLGRFNVSNV 300
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA+ + + PL++I+ + E++ GR + + V+VDYAHTPDAL ++L ++
Sbjct: 301 LAAIGALLGMDYPLDEILAVLPELEGPAGRMQRLGGGDRPLVVVDYAHTPDALEKVLTAL 360
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R A R++ + GC G+ D GKRPLM ++A +D ++T DNP NE P I++++ AG
Sbjct: 361 RPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPEQIIENIRAGF 420
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ +G R A+ ++M D+VV+AGKGHE YQ
Sbjct: 421 VNPEAVTIMHG-------------------RAQAIASVISMARAEDVVVLAGKGHEDYQE 461
Query: 361 EGDKKEFFDDREESREALQYVDELH 385
++ F D EE+ L + H
Sbjct: 462 VCGERLPFSDIEEACTGLATWENPH 486
>gi|30316382|sp|Q8R9G2.2|MURE_THETN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
Length = 482
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 211/375 (56%), Gaps = 27/375 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I GD + + TTP+++ +Q L + M++ G + VVME SSH LAL R
Sbjct: 130 KVGLVGTIQNMI-GDRVIPTTHTTPESLDLQELFSLMVNEGVKYVVMEVSSHSLALHRVD 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
DFDIAVFTNL++DH+DFH + EEY K+KLF + V+NIDD ++ I
Sbjct: 189 SCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFKMA----KKASVINIDDKYSSMMIES 244
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
V+T+ +++ A V + + SL + V EIS + G ++YN LAA
Sbjct: 245 SKG--KVLTYGIKD-FAYVMAKEIKNSLSGVKFKVQIQDKKEEISLKIPGLFSVYNALAA 301
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+ V +G PL + + V V GR E ++ + F V +DYAHTPD + ++++++E
Sbjct: 302 ITVADFLGIPLRSVREALSHV-TVKGRFEPVETGRDFYVFIDYAHTPDGIRNIMEALKEY 360
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
R I V G G+ D+ KRPLM ++A +D ILTSDNP +E+P +I+ + G+ T
Sbjct: 361 EAGRKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTSDNPRSENPKEIIAQIEEGIKKT 420
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
Y + + D RR A+R A++ ++ D++++AGKGHETYQI GD
Sbjct: 421 NCPY-----------------VVIED-RREAIRYALSNAQKDDVIILAGKGHETYQIIGD 462
Query: 364 KKEFFDDREESREAL 378
K FD+RE +E L
Sbjct: 463 KVIPFDEREIVKEIL 477
>gi|50086343|ref|YP_047853.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter sp. ADP1]
gi|49532319|emb|CAG70031.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter sp. ADP1]
Length = 499
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 131/361 (36%), Positives = 208/361 (57%), Gaps = 30/361 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +Q+ + + + G +EASSHGL GR + D +IAV++NL+RDH+D+
Sbjct: 150 STHTTLDALQLQSALHQYVKEGARFASLEASSHGLEQGRLNGCDIEIAVYSNLSRDHLDY 209
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNA--TSFIAQGNPDVP-VVTFAMENKK 139
HGT Y AK++LF+ V+N DD A +A NP P ++T+++ +
Sbjct: 210 HGTLAAYAEAKSRLFAF---KSLKVAVINQDDAYAELMKAVAAQNPAQPQILTYSL-TQS 265
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
AD + + SL + ++ P G + S LLG N+ N++AA+ G LE++V+
Sbjct: 266 ADYSVKELQYSLSGARFILVGPKGEYLVESPLLGHFNVENLIAALIAAEQAGFALEELVK 325
Query: 200 GIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258
+ ++ PGR ++I D+++ F +VDYAHTPDAL+++L ++R +++ V GC G+
Sbjct: 326 TVPQLIGAPGRMQVIRDQDRLF--VVDYAHTPDALNQVLKTLRRHVQQQLWAVFGCGGDR 383
Query: 259 DRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPP 318
DRGKRPLMT+ A + ++ ILTSDNP E+P I DM G+ ++
Sbjct: 384 DRGKRPLMTQAALNGANPVILTSDNPRTENPKQIFADMKTGIDFSH-------------- 429
Query: 319 LPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
H+++ +HD RR A++ V + GD+VV+AGKGHE YQ + +FDD E + A
Sbjct: 430 ----HQIYEIHD-RREAIKYVVQHAQAGDIVVIAGKGHENYQEIQGVRHWFDDVTEVQSA 484
Query: 378 L 378
+
Sbjct: 485 I 485
>gi|347754357|ref|YP_004861921.1| UDP-N-acetylmuramyl tripeptide synthetase [Candidatus
Chloracidobacterium thermophilum B]
gi|347586875|gb|AEP11405.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus
Chloracidobacterium thermophilum B]
Length = 500
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 206/366 (56%), Gaps = 23/366 (6%)
Query: 18 DNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTR 77
D++ S TTP+A VQ + + +G +E SS GL R +++ F A+FTNLT+
Sbjct: 143 DDRRPSRLTTPEAPEVQAFLRRAWDSGCRHAAIEVSSIGLDRWRVADMRFAAAIFTNLTQ 202
Query: 78 DHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMEN 137
DH+D+HGT E Y +AK +LF V+N DD I N +VT+A+ +
Sbjct: 203 DHLDYHGTMERYFDAKLRLFDGRNGEVPGIAVLNTDDARTPDIITAINGRARIVTYAVHD 262
Query: 138 KKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDI 197
A+V + ++ + ++TP G+L++++ L+G + YNILAA A +A+ P + I
Sbjct: 263 PGAEVRLARLDVHTRGMALSLHTPRGMLDLATHLVGTPHAYNILAATATALALDVPTDAI 322
Query: 198 VRGIEEVDAVPGRCELID-EEQAFGVIVDYAHTPDALSRLLDSVRELAPR---RIITVVG 253
+ G+ VPGR E+++ + V VDYAHTPDAL+ + + RELA R+ITV G
Sbjct: 323 LAGVANT-VVPGRFEVVEGSDDHLLVAVDYAHTPDALANVTATARELARLRRGRVITVFG 381
Query: 254 CAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEN 313
C G+ DR KRPLM + A SD+TILTSDNP E P ILDD G+ + Y
Sbjct: 382 CGGDRDRTKRPLMAEAAAQGSDLTILTSDNPRREAPERILDDAEVGLRAVGKPY------ 435
Query: 314 DYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
HR+ RR A+ A+ + GD+VV+AGKGHETYQI FDDREE
Sbjct: 436 ---------HRIL---DRRQAIAFAIQTAQPGDVVVIAGKGHETYQILNHLTIHFDDREE 483
Query: 374 SREALQ 379
+R+AL+
Sbjct: 484 ARQALR 489
>gi|421466514|ref|ZP_15915193.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter radioresistens
WC-A-157]
gi|400203294|gb|EJO34287.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter radioresistens
WC-A-157]
Length = 499
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 203/363 (55%), Gaps = 27/363 (7%)
Query: 21 LESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM 80
+ S TT DA+ +QN + G V +EASSHGL GR + + +IA+++NL+RDH+
Sbjct: 147 VASTHTTLDALQLQNALHDFSSEGANFVALEASSHGLEQGRLNGCEIEIAIYSNLSRDHL 206
Query: 81 DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMEN 137
D+HGT Y +AKA LF V+N+DD A + AQ NP P ++T+++++
Sbjct: 207 DYHGTLAAYADAKALLFKFAT---LRSAVINLDDDYAPVMLETAQANPSRPKILTYSLQH 263
Query: 138 KKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDI 197
+AD SL + + P G + S LLG+ N+ N++A++ G L DI
Sbjct: 264 PEADYRVSDIHYSLEGAKFKLIAPTGEYVVQSPLLGQFNVENLVASLIAVEQAGFKLSDI 323
Query: 198 VRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAG 256
+ + ++ PGR ++I D E+ F +VDYAHTPDAL+++L +++ ++ + GC G
Sbjct: 324 LATVPQLKGAPGRMQVIRDAERLF--VVDYAHTPDALTQVLVTLKRHVQHQLWAIFGCGG 381
Query: 257 ESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYY 316
+ DRGKRPLMT+ A + +D ILTSDNP E P I DM GV +G
Sbjct: 382 DRDRGKRPLMTQAALNDADPVILTSDNPRTESPEQIFADMKNGV--------DFG----- 428
Query: 317 PPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESRE 376
N H + D RR A++ AV + GD+VV+AGKGHE YQ + +FDD E +
Sbjct: 429 ----NHHVQEIRD-RREAIKYAVQQAQAGDIVVIAGKGHENYQEIDGVRHWFDDVVEVQS 483
Query: 377 ALQ 379
AL+
Sbjct: 484 ALE 486
>gi|427384542|ref|ZP_18881047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides oleiciplenus YIT 12058]
gi|425727803|gb|EKU90662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides oleiciplenus YIT 12058]
Length = 483
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/382 (35%), Positives = 203/382 (53%), Gaps = 43/382 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M +G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DKAVPTEHTTPDPITLNQLLGQMADSGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + L F+ ++L + G+L E++ +GR
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LCDFKGKILESHFEGMLLDFNNHELAVRFIGR 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + + + + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRSPKGYTAIVDYAHTPDALI 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGW-TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ MQ+ + + RR A++ A + + GD+++VA
Sbjct: 413 INDMLAGLDKDDMQKTISIAD------------------RREAIKTACMLAQPGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREE 373
GKGHE YQ K FDD+EE
Sbjct: 455 GKGHENYQETKGVKHHFDDKEE 476
>gi|440756713|ref|ZP_20935913.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Microcystis aeruginosa TAIHU98]
gi|440172742|gb|ELP52226.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Microcystis aeruginosa TAIHU98]
Length = 496
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 144/357 (40%), Positives = 203/357 (56%), Gaps = 28/357 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +AK + G E VME SSH L GR F + VFTNLTRDH+D+H
Sbjct: 159 TTPFANELQASLAKAVSAGNEIAVMEVSSHALDQGRVQGCTFPVTVFTNLTRDHLDYHLD 218
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKAKLFS D + + ++N+DD A +P V+T+++ + +AD +
Sbjct: 219 MEDYFAAKAKLFSP--DYLQGKAIINLDDAYGQRLAASLSPQ-QVLTYSVCDARADFYTK 275
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ ++ TP G + +S L+G++N+ N+LAAVA + G LE ++ I +
Sbjct: 276 DLHYQPTGVEGVMVTPQGEIAFASPLVGQYNLANLLAAVAAVLECGVDLETVIGQIPQFS 335
Query: 206 AVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q VIVDYAHTPD+L +L + R R+I V GC G+ DR KR
Sbjct: 336 GVPGRMERVSIAPDQDISVIVDYAHTPDSLENVLKATRPFISGRMICVFGCGGDRDRTKR 395
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM KIA + +D+ I+TSDNP E P IL+D++AG+ PP
Sbjct: 396 PLMGKIAAELADLAIVTSDNPRTEAPERILEDIIAGI----------------PP----- 434
Query: 324 RLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + I R +A+ A+ + GD V++AGKGHE YQI G +K FDDRE++R AL
Sbjct: 435 EITVQVISDRALAIDTAIQAAQPGDGVIIAGKGHEDYQILGTEKIHFDDREQARAAL 491
>gi|299142297|ref|ZP_07035430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella oris C735]
gi|298576386|gb|EFI48259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella oris C735]
Length = 483
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 140/388 (36%), Positives = 204/388 (52%), Gaps = 43/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D ++ + TTPD + + L+AKM+ G E ME SSH +
Sbjct: 129 FGHKVGLLSTVCNYID-DVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 188 RIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDSL--PKDAFAITNADDKNG--M 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
I N V T+++ L+ F ++L G+ E+ +G+
Sbjct: 244 IMVQNTKATVKTYSIRT-----------LADFRARILECHFEGMYLEIDGREVGVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+ N+LA I +G ED++ + + +V GR E I + F IVDYAHTPDAL+
Sbjct: 293 FNVSNLLAVYGAAIMLGKKPEDVLLVLSTLHSVNGRLEPIHSPEGFTAIVDYAHTPDALA 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ E+ +ITV G G D+GKRPLM + A +SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHEVLDGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVG-WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ + + R+ A+R A M ++GD+V+VA
Sbjct: 413 INDMLAGLNEQQMRKVISIVD------------------RKEAIRTACMMAQKGDVVLVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHETYQ K FDD+E E +
Sbjct: 455 GKGHETYQEIKGVKHHFDDKEVLHEIFK 482
>gi|313147880|ref|ZP_07810073.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
gi|313136647|gb|EFR54007.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
Length = 485
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/384 (35%), Positives = 205/384 (53%), Gaps = 41/384 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGRMADEGCKYAFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEL--PKSSFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +GR
Sbjct: 244 VMTQNTKSKVYTYSLRS-----------LSDFKGKVLESHFEGMLLDFNNHELAVQFIGR 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G E+++ + + V GR + I Q + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAIRSPQGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG+ +N+ L + D R+ A+R A + E+GD+++VAG
Sbjct: 413 INDMLAGL-----------DNE-----DKKKTLSIAD-RKEAIRTACMLAEKGDVILVAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESRE 376
KGHE YQ K FDD+E +E
Sbjct: 456 KGHENYQEIKGVKHHFDDKEVLKE 479
>gi|20808076|ref|NP_623247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermoanaerobacter tengcongensis MB4]
gi|20516658|gb|AAM24851.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
tengcongensis MB4]
Length = 492
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 211/375 (56%), Gaps = 27/375 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I GD + + TTP+++ +Q L + M++ G + VVME SSH LAL R
Sbjct: 140 KVGLVGTIQNMI-GDRVIPTTHTTPESLDLQELFSLMVNEGVKYVVMEVSSHSLALHRVD 198
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
DFDIAVFTNL++DH+DFH + EEY K+KLF + V+NIDD ++ I
Sbjct: 199 SCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFKM----AKKASVINIDDKYSSMMIES 254
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
V+T+ +++ A V + + SL + V EIS + G ++YN LAA
Sbjct: 255 SKG--KVLTYGIKD-FAYVMAKEIKNSLSGVKFKVQIQDKKEEISLKIPGLFSVYNALAA 311
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+ V +G PL + + V V GR E ++ + F V +DYAHTPD + ++++++E
Sbjct: 312 ITVADFLGIPLRSVREALSHV-TVKGRFEPVETGRDFYVFIDYAHTPDGIRNIMEALKEY 370
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
R I V G G+ D+ KRPLM ++A +D ILTSDNP +E+P +I+ + G+ T
Sbjct: 371 EAGRKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTSDNPRSENPKEIIAQIEEGIKKT 430
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
Y + + D RR A+R A++ ++ D++++AGKGHETYQI GD
Sbjct: 431 NCPY-----------------VVIED-RREAIRYALSNAQKDDVIILAGKGHETYQIIGD 472
Query: 364 KKEFFDDREESREAL 378
K FD+RE +E L
Sbjct: 473 KVIPFDEREIVKEIL 487
>gi|166154480|ref|YP_001654598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis 434/Bu]
gi|166155355|ref|YP_001653610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|301335740|ref|ZP_07223984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis L2tet1]
gi|339625929|ref|YP_004717408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Chlamydia trachomatis L2c]
gi|165930468|emb|CAP03961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis 434/Bu]
gi|165931343|emb|CAP06915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|339461172|gb|AEJ77675.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Chlamydia trachomatis L2c]
gi|440526070|emb|CCP51554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis L2b/8200/07]
gi|440535895|emb|CCP61408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L2b/795]
gi|440536786|emb|CCP62300.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L1/440/LN]
gi|440537677|emb|CCP63191.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L1/1322/p2]
gi|440538567|emb|CCP64081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L1/115]
gi|440539455|emb|CCP64969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L1/224]
gi|440540346|emb|CCP65860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L2/25667R]
gi|440541235|emb|CCP66749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L3/404/LN]
gi|440542123|emb|CCP67637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L2b/UCH-2]
gi|440543014|emb|CCP68528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L2b/Canada2]
gi|440543905|emb|CCP69419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L2b/LST]
gi|440544795|emb|CCP70309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L2b/Ams1]
gi|440545685|emb|CCP71199.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L2b/CV204]
gi|440913947|emb|CCP90364.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L2b/Ams2]
gi|440914837|emb|CCP91254.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L2b/Ams3]
gi|440915729|emb|CCP92146.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L2b/Canada1]
gi|440916623|emb|CCP93040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L2b/Ams4]
gi|440917513|emb|CCP93930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis L2b/Ams5]
Length = 483
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 141/380 (37%), Positives = 215/380 (56%), Gaps = 31/380 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+RTG++ ++ + I G+N++ TTPDA+++Q A+M+ A VME SS G+ALGR
Sbjct: 128 GIRTGLIGTIEH-ILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVMEVSSIGMALGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
E +F V TN+T DH+DFHG+ EEY AK + F+ + PE+ VVN+D A SF+
Sbjct: 187 VRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASL--PEKGIAVVNLDCEYAPSFL 244
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
V++A+ +++AD + +L + + + + L+G HN+YN+L
Sbjct: 245 --NGSQARAVSYAI-HQEADYRADRLKLYSSGSSYDIWYQGKVFPCETSLIGEHNVYNVL 301
Query: 182 AAVA-VGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
A++A V +G D+VR + + A GR + I F V +DYAHTPDAL + +
Sbjct: 302 ASLAVVHQFLGGDFADLVRDVRFLSAPKGRLDPI-LLGPFPVYIDYAHTPDALDNVCRIL 360
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+L P+ R+I V GC G+ DR KRPLM K+ ++ + +TSDNP EDP I+ D+
Sbjct: 361 LQLLPKYGRLIIVFGCGGDRDRVKRPLMAKV-SEHYGFSFVTSDNPRTEDPDQIIADICK 419
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G++ Y+ E+D R++A+ A++M + D+V+VAGKGHE Y
Sbjct: 420 --GFSTDHYVV--ESD----------------RKLAIEKAISMASDKDIVLVAGKGHEGY 459
Query: 359 QIEGDKKEFFDDREESREAL 378
QI + FDDRE EAL
Sbjct: 460 QIFKHQTIVFDDREVVCEAL 479
>gi|262280347|ref|ZP_06058131.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
calcoaceticus RUH2202]
gi|262258125|gb|EEY76859.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
calcoaceticus RUH2202]
Length = 499
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/361 (37%), Positives = 196/361 (54%), Gaps = 29/361 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QN + G +EASSHGL GR + +IAV++NL+RDH+D+
Sbjct: 149 STHTTLDALQLQNALHDYTKQGATFASLEASSHGLEQGRLNGCAIEIAVYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMENKK 139
HGT E Y AKA LF V+N+DD A I A+ NP P ++T+++
Sbjct: 209 HGTLEAYAEAKALLFRF---SSLKVAVINLDDEYAALMINAAKQNPAQPKILTYSLTQNT 265
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
AD + SL + + G + S LLG N+ N++AA+ G LE +V
Sbjct: 266 ADYYISDLSYSLAGATFNLVSQQGSFAVQSPLLGHFNVENLIAALIAAEQAGFDLEALVA 325
Query: 200 GIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258
+ ++ PGR ++I D E+ F +VDYAHTPDAL ++L +++ ++ V GC G+
Sbjct: 326 FVPQLIGAPGRMQVIRDGERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDR 383
Query: 259 DRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPP 318
DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 384 DRGKRPLMTQAALDGANPIILTSDNPRTEDPEQIFADMKQGIDFS--------------- 428
Query: 319 LPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E + A
Sbjct: 429 ---GHRMHEIHD-RREAIKFVAQQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVEVQSA 484
Query: 378 L 378
+
Sbjct: 485 I 485
>gi|389783816|ref|ZP_10195066.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhodanobacter spathiphylli B39]
gi|388434248|gb|EIL91196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhodanobacter spathiphylli B39]
Length = 520
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 201/381 (52%), Gaps = 27/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R + ++ +HG E RTTPDA+ VQ +A + V ME SSH L GR
Sbjct: 156 GHRAASIGTLGAGVHGQLH-EGERTTPDAISVQAQLAAFRDDRVSHVAMEVSSHALVQGR 214
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ VDF++A FTNLTRDH+D+HG+ E Y AKA LF+ P V+NIDD
Sbjct: 215 VAAVDFEVAAFTNLTRDHLDYHGSMEAYGAAKAMLFAW---PGLRSAVINIDDAFGRELS 271
Query: 122 AQGNPDVPVVTF-AMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+Q + D+ ++ F A + +A+V S + TP G I S L+GR N+ N+
Sbjct: 272 SQLSDDLQLLRFSAAGDDEAEVAASDIVTSAEGLAFHLRTPWGSQAIRSQLIGRFNVANL 331
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELID--EEQAFGVIVDYAHTPDALSRLLD 238
LA VA A+G P IV + + V GR I Q V+VDYAHTPDAL + L+
Sbjct: 332 LAVVASLGALGEPFARIVEVVARLQPVNGRMNRIGGVHGQPL-VVVDYAHTPDALEQALN 390
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+VR ++I V GC GE D GKRPLM +IA +DV I+T DNP ED I+ ++A
Sbjct: 391 AVRAHCAGKLICVFGCGGERDAGKRPLMGEIAARLADVAIVTDDNPRGEDGDAIVAQIVA 450
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ T + E D R VA+ A+A+ GD V++AGKGHETY
Sbjct: 451 GM--TAAPAMAV-ERD----------------RAVAIADALALARPGDAVLIAGKGHETY 491
Query: 359 QIEGDKKEFFDDREESREALQ 379
Q K FDD +R AL+
Sbjct: 492 QDGATGKHPFDDLLVARAALE 512
>gi|406968363|gb|EKD93227.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[uncultured bacterium]
Length = 447
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 198/383 (51%), Gaps = 27/383 (7%)
Query: 2 GLRTGMLSSVSYYI-HGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + GM+++ + I H E TT + Q L+ +M+ G V+E +SH +
Sbjct: 64 GYKVGMITTADFRIDHEVVVNEYKMTTLSPFIFQQLLRRMVDRGCSYAVVEVTSHAMDQS 123
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKV-----VNIDDP 115
R V+ D+AV TN++ DH+D+HG Y AK KLF+ + R V +N DDP
Sbjct: 124 RLWGVNVDVAVLTNISHDHLDYHGDIPSYIQAKGKLFNLLNHARRKSNVPKISILNGDDP 183
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
A + Q D T+ KK ++ T+ L P+ LEI L GR
Sbjct: 184 -ALDYFQQFVADR---TYIYGLKKGSFQASNLVMTQNGTKFLFKIPNHELEIQFPLPGRF 239
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+ N LAA VG+ + L I R + + +VPGR E IDE Q + ++VDYAH PD+L +
Sbjct: 240 NVENALAAATVGVVLPLNLNIIQRALNDAKSVPGRLERIDEGQGYAIVVDYAHAPDSLEK 299
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
LL REL P+R+I V G G+ DR KRP+M +I +DV +LT D+P ED L+IL
Sbjct: 300 LLSMFRELTPQRLIVVFGATGDRDRSKRPVMGQIVDRYADVIVLTDDDPYTEDHLEILSQ 359
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+ G+ E D + +P+ RR A+R A+AM GD V++AGKG
Sbjct: 360 VAQGISRQ--------EGDRFWQVPD---------RRQAIRLALAMARAGDTVIIAGKGC 402
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E +Q+ G +K DDRE R L
Sbjct: 403 EPFQVVGTEKIPSDDREIVRNFL 425
>gi|90416331|ref|ZP_01224263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[gamma proteobacterium HTCC2207]
gi|90332056|gb|EAS47270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[marine gamma proteobacterium HTCC2207]
Length = 516
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/354 (37%), Positives = 201/354 (56%), Gaps = 24/354 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTPDAV +Q ++A++ G V +EASSHGL R + + D A+FTNL+RDH+D+HG
Sbjct: 179 TTPDAVAMQRILAELRDAGARRVAIEASSHGLVQRRIAGLRIDTAIFTNLSRDHLDYHGD 238
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
Y AK++LF+ + +H V+N+DD +A +P V +T++ EN AD+H
Sbjct: 239 LNSYAAAKSRLFA--MSGLKH-AVINLDDNVGRLILANLDPAVDGITYSFENHTADIHCD 295
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ EL + TP G ++S LLG+ N+ N+LA + G L+DI+ ++
Sbjct: 296 RIELGASTLSAELVTPWGRGRLTSPLLGKFNLANLLAVIGAAGMQGFKLDDILHAAAKLK 355
Query: 206 AVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPL 265
AVPGR E++D V+VDYAHTPDAL + L ++R +++ V GC G+ DRGKR
Sbjct: 356 AVPGRMEIVDPSARPLVVVDYAHTPDALDKALRALRLQCSGKLVVVFGCGGDRDRGKRAE 415
Query: 266 MTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRL 325
M ++A +D+ ++TSDNP +E P I+D +L G+ + L
Sbjct: 416 MGRVADQLADLVVVTSDNPRSESPEKIIDQVLLGISRKV--------------------L 455
Query: 326 FLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+ D RR A+R A+ D+V++AGKGHE YQI K+ F D E+R AL+
Sbjct: 456 AVAD-RRDAIRAAINAAAVDDIVLIAGKGHEAYQIVDAKRLPFSDLAEARLALR 508
>gi|340350596|ref|ZP_08673576.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella nigrescens ATCC 33563]
gi|339607740|gb|EGQ12669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella nigrescens ATCC 33563]
Length = 489
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/380 (36%), Positives = 196/380 (51%), Gaps = 32/380 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D + + TTPD + + L+A+M+ G E ME SSH +
Sbjct: 130 FGYKVGLLSTVCNYID-DKAIPADHTTPDPIELNELLARMVAEGCEYAFMECSSHAIHQR 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YRNAK K+F +D + + N DD N
Sbjct: 189 RIGGLKFAGGIFTNLTRDHLDYHKTFENYRNAK-KMFFDDLDKDAF-AITNADDKNGMIM 246
Query: 121 IAQGNPDVPVVTFA-MENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + + M + +A + FE E E+ +G+ N+ N
Sbjct: 247 VQNCKAQIKTYSIKRMADFRAHILECHFEGMYLEIDG--------KEVGVQFIGKFNVSN 298
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA I +G EDI+ + + +V GR E I + IVDYAHTPDAL L +
Sbjct: 299 LLAVYGTAIMLGKKAEDILVALSTLKSVNGRLEPISSPDGYTAIVDYAHTPDALENTLLA 358
Query: 240 VRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ E+ + +ITV G G D+GKRPLM A SD ILTSDNP NEDP I+DDM
Sbjct: 359 IHEVLEGKGGHVITVCGAGGNRDKGKRPLMALEAVKHSDKVILTSDNPRNEDPQSIIDDM 418
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
LAG+ ++ + + + D R+ A+R A M ++GD++++AGKGHE
Sbjct: 419 LAGLDSAQKKKV----------------ISIVD-RKEAIRTACMMAQKGDVILIAGKGHE 461
Query: 357 TYQIEGDKKEFFDDREESRE 376
TYQ K FDD E RE
Sbjct: 462 TYQEINGVKHHFDDHEVVRE 481
>gi|120601786|ref|YP_966186.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfovibrio vulgaris
DP4]
gi|120562015|gb|ABM27759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Desulfovibrio vulgaris DP4]
Length = 486
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 145/382 (37%), Positives = 199/382 (52%), Gaps = 31/382 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G+L +VSY G + +P TTPD + + ++ +M G + ME SSH L R
Sbjct: 128 GRRCGVLGTVSYRWPGHVE-TAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQER 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ + F AV TNLT+DH+D+HG E Y NAKA+LF + + +H VN DDP +
Sbjct: 187 VAGIRFAGAVLTNLTQDHLDYHGDMETYFNAKARLFRELPEVSKH-CAVNADDPWGRRLL 245
Query: 122 AQGNPDVP-VVTFAMENKKAD----VHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
A D+P V FA+ +H S + ++ E+ S L+G HN
Sbjct: 246 A----DLPGAVGFALTGAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHN 301
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
N+LA AVG+ +G D V +E VPGR E I ++ V VDYAHTPDAL +
Sbjct: 302 ASNLLAVQAVGLGLGLSPADFVH-LENFTGVPGRLERITNDRGLDVFVDYAHTPDALVNV 360
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L ++R++ RI+TV GC G DR KRPLM +DV +LTSDNP +EDPL I++D+
Sbjct: 361 LRALRDVGFTRIVTVFGCGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDV 420
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
P L + RR A+ A+ M GD ++VAGKGHE
Sbjct: 421 -------------------KPGLAGAREVVAEADRRKAIALALEMLRPGDALLVAGKGHE 461
Query: 357 TYQIEGDKKEFFDDREESREAL 378
YQ GD+K F D++ RE L
Sbjct: 462 DYQQVGDRKLPFSDQQTIREIL 483
>gi|352090512|ref|ZP_08954561.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodanobacter sp.
2APBS1]
gi|351676885|gb|EHA60037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodanobacter sp.
2APBS1]
Length = 502
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 145/383 (37%), Positives = 199/383 (51%), Gaps = 27/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R + ++ +HG E RTTPDAV VQ L+A+ V ME SSH L GR
Sbjct: 138 GHRAASIGTLGAGVHGRLH-EGERTTPDAVTVQELLAEFRAAQVSHVAMEVSSHALEQGR 196
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ VD+++A FTNLTRDH+D+HG+ E Y AKAKLF+ P V+NIDD
Sbjct: 197 VAAVDYEVAAFTNLTRDHLDYHGSMEAYGAAKAKLFAW---PGLRSAVINIDDTFGRELA 253
Query: 122 AQGNPDVPVVTFAM-ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
Q V + F+M ++ +A++ S + TP G + S L+GR N+ N+
Sbjct: 254 TQLLAGVQRLRFSMADDGEAEIAASAIVTSAEGLAFQLRTPWGTRAVRSHLIGRFNVANL 313
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELID--EEQAFGVIVDYAHTPDALSRLLD 238
LA V A+G P IV +E++ V GR + Q V+VDYAHTPDAL + L
Sbjct: 314 LAVVGCLGALGEPFARIVEALEQLQPVNGRMSRLGGVHGQPL-VVVDYAHTPDALEQALA 372
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+VR ++I V GC GE D GKRPLM IA +DV I+T DNP ED I+ ++A
Sbjct: 373 AVRAHCAGKLICVFGCGGERDAGKRPLMGAIAARLADVAIVTDDNPRGEDGDAIVAQIVA 432
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ + E D R +A+ A+ + GD+V++AGKGHETY
Sbjct: 433 GMAAARAMTV---ERD----------------RALAIADALQLAHAGDVVLIAGKGHETY 473
Query: 359 QIEGDKKEFFDDREESREALQYV 381
Q K FDD +R L+ +
Sbjct: 474 QDGAIGKRPFDDLAVARAVLERI 496
>gi|443477398|ref|ZP_21067249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudanabaena biceps PCC 7429]
gi|443017494|gb|ELS31922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudanabaena biceps PCC 7429]
Length = 497
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 194/361 (53%), Gaps = 21/361 (5%)
Query: 20 KLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDH 79
L + TTP AV +Q +A+ + G + +ME SSH L R F+ AVFTNLT+DH
Sbjct: 148 SLTATHTTPFAVDLQEQLAQAITAGCDVGLMEVSSHALDQQRVLGCPFEAAVFTNLTQDH 207
Query: 80 MDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKK 139
+D+H E Y AKA LF + + R ++N+DDP + D P+ ++++ N +
Sbjct: 208 LDYHKDLESYFQAKALLFGD--NYLQGRAIINLDDPFGQRLVKMLG-DQPIWSYSISNPQ 264
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
AD + +++P G + +S L+GR N+ NILAA+A + +G L ++V
Sbjct: 265 ADFYTENLTYLPNGVTATLHSPQGSIAFNSPLVGRFNVENILAAIATALHMGMSLSEVVS 324
Query: 200 GIEEVDAVPGRCELIDEEQAFGVIVD--YAHTPDALSRLLDSVRELAPRRIITVVGCAGE 257
+ E VPGR E + V V YAHTPD+L LL+++R R +I + GC G+
Sbjct: 325 RLPEFKNVPGRVERVQVSDDQDVTVVVDYAHTPDSLENLLEAMRPFTQRELICIFGCGGD 384
Query: 258 SDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYP 317
DR KRPLM IA +D +TSDNP EDP ILDD++ GV + + E D
Sbjct: 385 RDRTKRPLMGGIAARLADRVYVTSDNPRTEDPQSILDDVVVGVKAHIGDKPMIVEGD--- 441
Query: 318 PLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
R ++ A+ + GD +++AGKGHE YQI G +K FDDREE++ A
Sbjct: 442 -------------RHKCIQTAIISAQAGDTILIAGKGHEDYQIIGREKIHFDDREEAQAA 488
Query: 378 L 378
L
Sbjct: 489 L 489
>gi|255692978|ref|ZP_05416653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides finegoldii DSM 17565]
gi|423301215|ref|ZP_17279239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides finegoldii CL09T03C10]
gi|260621291|gb|EEX44162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides finegoldii DSM 17565]
gi|408471816|gb|EKJ90345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides finegoldii CL09T03C10]
Length = 483
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/388 (34%), Positives = 205/388 (52%), Gaps = 43/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEPIPTEHTTPDPITLNRLLGRMADEGCKYAFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + + + IVDYAHTPDAL+
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRSKDGVTAIVDYAHTPDALT 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ L + R+ A+R A + E+GD++++A
Sbjct: 413 INDMLAGLDAEDMRKTLSIAD------------------RKEAIRTACMLAEKGDVILIA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHE YQ K FDD+EE + L
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEEVKRMLN 482
>gi|262380447|ref|ZP_06073601.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
radioresistens SH164]
gi|262297893|gb|EEY85808.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
radioresistens SH164]
Length = 499
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 202/363 (55%), Gaps = 27/363 (7%)
Query: 21 LESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM 80
+ S TT DA+ +QN + G V +EASSHGL GR + +IA+++NL+RDH+
Sbjct: 147 VASTHTTLDALQLQNALHDFSSQGANFVALEASSHGLEQGRLDGCEIEIAIYSNLSRDHL 206
Query: 81 DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMEN 137
D+HGT Y +AKA LF V+N+DD A + AQ NP P ++T+++++
Sbjct: 207 DYHGTLAAYADAKALLFKFAT---LRSAVINLDDDYAPVMLETAQANPARPKILTYSLQH 263
Query: 138 KKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDI 197
+AD SL + + P G + S LLG+ NI N++A++ G L DI
Sbjct: 264 PEADYRVSDIHYSLEGAKFKLIAPTGEYVVQSPLLGQFNIENLVASLIAVEQAGFKLSDI 323
Query: 198 VRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAG 256
+ + ++ PGR ++I D E+ F +VDYAHTPDAL+++L +++ ++ + GC G
Sbjct: 324 LATVPQLKGAPGRMQVIRDVERLF--VVDYAHTPDALTQVLVTLKRHVQNQLWAIFGCGG 381
Query: 257 ESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYY 316
+ DRGKRPLMT+ A + +D ILTSDNP E P I DM GV +G
Sbjct: 382 DRDRGKRPLMTQAALNDADPVILTSDNPRTESPEQIFADMKNGV--------DFG----- 428
Query: 317 PPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESRE 376
N H + D RR A++ AV + GD+VV+AGKGHE YQ + +FDD E +
Sbjct: 429 ----NHHVQEIRD-RREAIKYAVQQAQAGDIVVIAGKGHENYQEIDGVRHWFDDVVEVQS 483
Query: 377 ALQ 379
AL+
Sbjct: 484 ALE 486
>gi|407451622|ref|YP_006723346.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer
RA-CH-1]
gi|403312606|gb|AFR35447.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer
RA-CH-1]
Length = 486
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 29/374 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + ++S+V Y I GD S TTPD V + L+AK + G E ME SSHG+
Sbjct: 129 LGYSSALISTVEYRI-GDEVFPSTHTTPDVVKLNELLAKAVAQGCEYAFMEVSSHGIHQN 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +A FTN+T DH+D+H T EY N K F + P+ + N+DD N
Sbjct: 188 RTEGLHFKVAGFTNITHDHLDYHKTFLEYLNTKKSFFDNL--PDSAVAITNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N T+A++ +D H E+ +L+N E+ + L G+ N+YN+
Sbjct: 244 VMLQNTKAKKKTYALKT-LSDYHGRLLEVDF--NGMLLNFNGK--EVWTSLTGKFNVYNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L + +G +I+ I ++ V GR E I E +VDYAHTPDAL +LDS+
Sbjct: 299 LLVFGIARELGFDEVEILTAISQLKRVNGRFETIKSEGGIFFVVDYAHTPDALENILDSI 358
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ + R+I+V GC G+ D KRP M KIAT KS + I+TSDNP EDP I+ ++ A
Sbjct: 359 NEIRTKNERLISVFGCGGDRDHSKRPEMGKIATQKSTLAIITSDNPRTEDPNAIIQEIEA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GV Q + K Y +P+ R+ A++ A+ E D+++VAGKGHETY
Sbjct: 419 GV--EPQCFSK------YTVVPD---------RKEAIKMAIKFAEPKDIILVAGKGHETY 461
Query: 359 QIEGDKKEFFDDRE 372
Q K FDD+E
Sbjct: 462 QEVNGVKHHFDDKE 475
>gi|365959837|ref|YP_004941404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Flavobacterium columnare ATCC 49512]
gi|365736518|gb|AEW85611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Flavobacterium columnare ATCC 49512]
Length = 486
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/384 (34%), Positives = 213/384 (55%), Gaps = 29/384 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+LS+V + + ++ TTPD++ + + +M+ G E ME SSHG+ R
Sbjct: 130 GYKVGLLSTVKIMVD-TTEYKATHTTPDSLTINCFLDQMVQEGCEYCFMEVSSHGVHQKR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ F VFTNL+ DH+D+H T EYR+ K F + P+ + NIDD N +
Sbjct: 189 TEGLLFAGGVFTNLSHDHLDYHSTFAEYRDVKKAFFDHL--PKTAFALTNIDDKNGAVML 246
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
N T+A++ AD + E L Q+ VN E+ + L+G N YN+L
Sbjct: 247 Q--NTHARKKTYALKTY-ADYKAIILENQLSGLQLKVNEQ----EVWTRLIGTFNAYNLL 299
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
A V + +G + +R + E+++V GR + I ++ IVDYAHTPDAL +L+++
Sbjct: 300 AIYGVAVELGIDKIEALRLLSELESVSGRFQFIVSKEKITAIVDYAHTPDALENVLNTIN 359
Query: 242 ELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
++ + ++IT+VGC G+ DR KRP+M +IAT+ S ILTSDNP E P I+++M AG
Sbjct: 360 DIRTKNEQLITIVGCGGDRDRTKRPIMAQIATEMSSKAILTSDNPRTESPEAIIEEMEAG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ + + + KY L + D R+ A++ A M E GD++++AGKGHETYQ
Sbjct: 420 I--SAENFKKY--------------LSIVD-RKQAIKTACQMAESGDIILIAGKGHETYQ 462
Query: 360 IEGDKKEFFDDREESREALQYVDE 383
++ FDD + +E L+ +++
Sbjct: 463 EVNGVRQDFDDMKIVQELLEQLNK 486
>gi|323343874|ref|ZP_08084101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella oralis ATCC 33269]
gi|323095693|gb|EFZ38267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella oralis ATCC 33269]
Length = 483
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 141/374 (37%), Positives = 200/374 (53%), Gaps = 29/374 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI D + + TTPD + + L+ +M++ G E ME SSH +A
Sbjct: 129 MGYKCGLLSTVCNYIE-DEAIPADHTTPDPIELNELLGRMVNTGCEYAFMECSSHAIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 188 RISGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDEL--PKGAFAITNADDKNG--M 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I N V T++ + AD E FE L H E+ +G+ N+ N+
Sbjct: 244 IMVQNTKATVKTYSTRS-AADFKARILECH-FEGMYLDIDGH---EVGVQFIGKFNVSNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L +G EDI+ + + +V GR E I + + IVDYAHTPDAL +L ++
Sbjct: 299 LTVYGAARMLGKQPEDILLVMSTLHSVSGRLEPIHSPEGYTAIVDYAHTPDALENVLKAI 358
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ ++ITV G G D+GKRPLM + A +SD I+TSDNP E+P DI++DML
Sbjct: 359 HEVLNGKGKLITVCGAGGNRDKGKRPLMAQEAVKQSDKVIITSDNPRFEEPQDIINDMLD 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ Q+ K + + D R+ A+R A M ++GD+++VAGKGHETY
Sbjct: 419 GL--NAQQLKKV--------------ISIVD-RKEAIRTACMMAQKGDVILVAGKGHETY 461
Query: 359 QIEGDKKEFFDDRE 372
Q K FDD+E
Sbjct: 462 QEIKGVKYHFDDKE 475
>gi|153809199|ref|ZP_01961867.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185]
gi|423220324|ref|ZP_17206819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides caccae CL03T12C61]
gi|149128175|gb|EDM19395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides caccae ATCC 43185]
gi|392623401|gb|EIY17504.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides caccae CL03T12C61]
Length = 482
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/388 (35%), Positives = 204/388 (52%), Gaps = 43/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ KM G + ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGKMADEGCKYAFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSNFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + + + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRSPKGVTAIVDYAHTPDALI 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ L + R+ A+R A + E+GD+++VA
Sbjct: 413 INDMLAGLDAEDMRKTLSIAD------------------RKEAIRTACMLAEKGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHE YQ K FDD+E +E +
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEILKEIFK 482
>gi|424744570|ref|ZP_18172861.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-141]
gi|422942783|gb|EKU37819.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter baumannii
WC-141]
Length = 499
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/361 (37%), Positives = 197/361 (54%), Gaps = 29/361 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QN + G +EASSHGL GR + +IAV++NL+RDH+D+
Sbjct: 149 STHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCAIEIAVYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMENKK 139
HGT E Y AKA LF V+N+DD +A I A+ N P ++T+++
Sbjct: 209 HGTLEAYAEAKALLFRF---NSLKVAVINLDDEHAALMINAAKQNSAQPKILTYSLTQNT 265
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
AD + SL + +P G + S LLG N+ N++AA+ G LE +V
Sbjct: 266 ADYYISDLSYSLAGATFNLVSPQGSFAVQSPLLGHFNVENLIAALIAAEQAGFDLEALVT 325
Query: 200 GIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258
+ ++ PGR ++I D E+ F +VDYAHTPDAL ++L +++ ++ V GC G+
Sbjct: 326 FVPKLIGAPGRMQVIRDGERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDR 383
Query: 259 DRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPP 318
DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 384 DRGKRPLMTQAALDGANPIILTSDNPRTEDPEQIFADMKQGIDFS--------------- 428
Query: 319 LPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E + A
Sbjct: 429 ---GHRMQEIHD-RREAIKFVAQQAQAGDIVVIAGKGHENYQEINGVRHWFDDAVEVQSA 484
Query: 378 L 378
+
Sbjct: 485 I 485
>gi|225023746|ref|ZP_03712938.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC
23834]
gi|224943628|gb|EEG24837.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC
23834]
Length = 493
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/354 (38%), Positives = 187/354 (52%), Gaps = 31/354 (8%)
Query: 22 ESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMD 81
E+ TTP+ V VQ L+ + G +AV ME SSHGL R F A+FTNLTRDH+D
Sbjct: 153 ETTHTTPNPVRVQTLLHQFKQQGAKAVAMEVSSHGLDQNRVVGTPFSSAIFTNLTRDHLD 212
Query: 82 FHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA---QGNPDVPVVTFAMENK 138
+HG+ Y +KAKLF ++N DD A P++ V + N+
Sbjct: 213 YHGSMAAYGASKAKLFYWQ---SLQHAIINTDDEFGRELAAGLRADRPNLNVYGYGF-NE 268
Query: 139 KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIV 198
+AD+ +F S QV +TP G EI S LLGR N N+ A V + A G L D++
Sbjct: 269 QADIRITRFAASDQSMQVAFDTPWGSGEIHSRLLGRFNAQNLAACVGLLCAEGYSLPDVL 328
Query: 199 RGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPR--RIITVVGCAG 256
R + ++ GR + I V+VDYAHTPDAL + L ++RE+ P+ + V GC G
Sbjct: 329 RVLAQIRPATGRMDCISRAGRPLVVVDYAHTPDALEKALATLREIKPQGASLWCVFGCGG 388
Query: 257 ESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYY 316
DRGKRPLM A +D ++TSDNP E+P DI+ D+L V
Sbjct: 389 NRDRGKRPLMGSAAVQGADKVVITSDNPRMEEPQDIIADILPAV---------------- 432
Query: 317 PPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ-IEGDKKEFFD 369
P P + RRVA++ A+ D+V++AGKGHETYQ ++G+K F D
Sbjct: 433 -PQP----ALVEADRRVAIQTAIRRAAPQDIVLIAGKGHETYQDVQGEKHHFSD 481
>gi|387132317|ref|YP_006298289.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella intermedia 17]
gi|386375165|gb|AFJ08853.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella intermedia 17]
Length = 486
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 197/380 (51%), Gaps = 32/380 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D ++ + TTPD + + L+AKM+ G E ME SSH +
Sbjct: 130 FGHKVGLLSTVCNYID-DKEVPASHTTPDPIELNALLAKMVAEGCEYAFMECSSHAIHQR 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YR+AK F + + ++N DD N
Sbjct: 189 RIGGLKFAGGLFTNLTRDHLDYHKTFENYRDAKKMFFDDL--SKDAFAIINADDKNGMVM 246
Query: 121 IAQGNPDVPVV-TFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + T M + +A + FE E E+ +G+ N+ N
Sbjct: 247 VQNCKAKIKTYSTKRMADFRARILECHFEGMYLEVDG--------KEVGVQFIGKFNVSN 298
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA I +G EDI+ + + V GR E I + + IVDYAHTPDAL +L +
Sbjct: 299 LLAVYGTAIMLGKKAEDILVALSTLKNVNGRLEPIASPEGYTAIVDYAHTPDALENVLMA 358
Query: 240 VRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ E+ + + TV G G D+GKRPLM A +SD ILTSDNP NEDP I++DM
Sbjct: 359 IHEVLDGKGGNVFTVCGAGGNRDKGKRPLMALEAVKRSDKVILTSDNPRNEDPQAIIEDM 418
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
LAG+ T ++ + L + D R+ A+R A M ++GD++++AGKGHE
Sbjct: 419 LAGLDTTQKKKV----------------LSITD-RKEAIRTACMMAQKGDVILIAGKGHE 461
Query: 357 TYQIEGDKKEFFDDREESRE 376
TYQ K FDD E RE
Sbjct: 462 TYQEINGVKHHFDDHEVVRE 481
>gi|317504117|ref|ZP_07962119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
15606]
gi|315664789|gb|EFV04454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
15606]
Length = 483
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 200/383 (52%), Gaps = 33/383 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D ++ + TTPD + + L+AKM+ G E ME SSH +
Sbjct: 129 FGYKVGLLSTVCNYID-DVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 188 RIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGL--PKDAFAITNADDKNGMIM 245
Query: 121 IAQGNPDVPVVTF-AMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ V + +M + +A + FE E E+ +G+ N+ N
Sbjct: 246 VQNTKATVKTYSIRSMADFRARILECHFEGMYLEIDG--------REVGVQFIGKFNVSN 297
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA I +G EDI+ + + +V GR E I + F IVDYAHTPDAL+ +L++
Sbjct: 298 LLAVYGAAIMLGKKPEDILLVLSTLHSVSGRLEPIHSPEGFTAIVDYAHTPDALANVLNA 357
Query: 240 VREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ E+ +ITV G G D+GKRPLM + A +SD I+TSDNP EDP +I+++ML
Sbjct: 358 IHEVLDGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVIITSDNPRFEDPQEIINEML 417
Query: 298 AGVG-WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG+ M++ + + R+ A+R A M ++GD+V+VAGKGHE
Sbjct: 418 AGLNEQQMRKVISIVD------------------RKEAIRTACMMAQKGDVVLVAGKGHE 459
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
YQ K FDD+E E +
Sbjct: 460 NYQEIKGVKHHFDDKEVLHEIFK 482
>gi|421128634|ref|ZP_15588847.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira kirschneri str. 2008720114]
gi|410360257|gb|EKP07281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira kirschneri str. 2008720114]
Length = 504
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 135/383 (35%), Positives = 209/383 (54%), Gaps = 28/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ G++ ++ GD +++ TTPDA + ++ +M G V MEASSHGL LGR
Sbjct: 141 GINCGLIGTIGVKF-GDRVIDTGYTTPDASSLNLILKQMKEEGITTVFMEASSHGLKLGR 199
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF- 120
+ + VFTNLT+DH+DFH E+Y +K +LF + + V++ PN +
Sbjct: 200 MNGISIRAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDFSKSAFAVLDYSAPNGSKLY 259
Query: 121 --IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVN-TPHGILEISSGLLGRHNI 177
I PD+P+ +KK V+ + L+L T +N + + +IS+ LLG N+
Sbjct: 260 HKILNRFPDLPINVLDGIDKKWKVNDI--SLNLQGTYYTLNLSENRKQKISTNLLGSFNV 317
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRL 236
N A G+ +G LE + ++++ +PGR +++ +++ +VDYAHTPDAL +
Sbjct: 318 RNTALAFLTGVGIGLDLEKMSNSLKKIPQIPGRFQIVYSRDRSRMAVVDYAHTPDALENI 377
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ SVR+ P+R+IT+ GC G+ DR KRP M +IA + SD ILTSDNP E P ILD++
Sbjct: 378 IRSVRDSQPKRLITLFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEI 437
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGH 355
G +D+ P L ++ R A+ ++ EG ++VAGKGH
Sbjct: 438 QTGFS-----------SDFVP--------LLREVDRAKAIAEGISCLPEGGCLLVAGKGH 478
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E YQI G +K F D EE ++A
Sbjct: 479 EEYQIIGKEKRHFSDVEEVQKAF 501
>gi|46580913|ref|YP_011721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Desulfovibrio vulgaris str. Hildenborough]
gi|387154160|ref|YP_005703096.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfovibrio vulgaris
RCH1]
gi|46450333|gb|AAS96981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Desulfovibrio vulgaris str. Hildenborough]
gi|311234604|gb|ADP87458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
RCH1]
Length = 486
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 145/382 (37%), Positives = 199/382 (52%), Gaps = 31/382 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G+L +VSY G + +P TTPD + + ++ +M G + ME SSH L R
Sbjct: 128 GRRCGVLGTVSYRWPGHVE-AAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQER 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ + F AV TNLT+DH+D+HG E Y NAKA+LF + + +H VN DDP +
Sbjct: 187 VAGIRFAGAVLTNLTQDHLDYHGDMETYFNAKARLFRELPEVGKH-CAVNADDPWGRRLL 245
Query: 122 AQGNPDVP-VVTFAMENKKAD----VHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
A D+P V FA+ +H S + ++ E+ S L+G HN
Sbjct: 246 A----DLPGAVGFALTGAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHN 301
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
N+LA AVG+ +G D V +E VPGR E I ++ V VDYAHTPDAL +
Sbjct: 302 ASNLLAVQAVGLGLGLSPADFVH-LENFTGVPGRLERITNDRGLDVFVDYAHTPDALVNV 360
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L ++R++ RI+TV GC G DR KRPLM +DV +LTSDNP +EDPL I++D+
Sbjct: 361 LRALRDVGFTRIVTVFGCGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDV 420
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
P L + RR A+ A+ M GD ++VAGKGHE
Sbjct: 421 -------------------KPGLAGAREVVAEADRRKAIALALEMLRPGDALLVAGKGHE 461
Query: 357 TYQIEGDKKEFFDDREESREAL 378
YQ GD+K F D++ RE L
Sbjct: 462 DYQQVGDRKLPFSDQQTIREIL 483
>gi|402756246|ref|ZP_10858502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter sp. NCTC 7422]
Length = 499
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/368 (35%), Positives = 197/368 (53%), Gaps = 31/368 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +Q + G V +EASSHGL GR + + +IAV++NL+RDH+D+
Sbjct: 149 STHTTLDALQLQQALHDYAKQGASFVALEASSHGLEQGRLNGCELEIAVYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA--QGNPDVP-VVTFAMENKK 139
HGT + Y AKA LF V+N+DD + +A + NP P ++T+++
Sbjct: 209 HGTLDAYAEAKALLFKFTT---LKAVVINLDDEHGALMLAAARANPAQPKILTYSLTQAT 265
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
AD H + L + +P G + S LLG+ N+ N+LA++ G L D+++
Sbjct: 266 ADYHIADLQYRLSGASFSLISPSGSYVVQSPLLGQFNVENLLASLIAAEYAGFALADLIQ 325
Query: 200 GIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259
+ ++ PGR ++I +VDYAHTPDAL ++L +++ ++ V GC G+ D
Sbjct: 326 FVPQLKGAPGRMQVIQYTSRL-FVVDYAHTPDALIQVLTTLKRHVTGQLWAVFGCGGDRD 384
Query: 260 RGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPL 319
RGKRPLMT+ A D ++ ILTSDNP E+P I DM G+ +
Sbjct: 385 RGKRPLMTQAALDHANPVILTSDNPRTENPEQIFADMKQGINFVQH-------------- 430
Query: 320 PNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
+H+I RR A++ VA + GD+VV+AGKGHE YQ + +FDD E + A
Sbjct: 431 ------VMHEIHDRREAIKFVVAQAQAGDIVVIAGKGHENYQEIDGVRHWFDDVVEVQSA 484
Query: 378 LQYVDELH 385
+ +LH
Sbjct: 485 I--ATQLH 490
>gi|452876893|ref|ZP_21954225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa VRFPA01]
gi|452186306|gb|EME13324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa VRFPA01]
Length = 487
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 140/386 (36%), Positives = 206/386 (53%), Gaps = 26/386 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ +G LES R TTPD + VQ +A + G AV ME SSHGL
Sbjct: 126 LGERCGIVGTLGTGFYG--ALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FDIAVFTNL+RDH+D+HG+ E Y AKAKLF+ P +V+N+DD
Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAW---PGLRCRVINLDDDFGRR 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ D ++T+++ + A ++ + + + TPHG + S LLGR N+ N
Sbjct: 241 LAGE-EQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + +G PL DI+R + ++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 300 LLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDALEKVLEA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM IA +D ++T DNP E I+ D+ G
Sbjct: 360 LRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ D LP+ H I AV D+V++AGKGHE YQ
Sbjct: 420 ----------FAAADKVTFLPSRGEAIAHLIASAAVD---------DVVLLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREALQYVDELH 385
+ F D E++ AL + H
Sbjct: 461 EIDGVRHPFSDIEQAERALAAWEVAH 486
>gi|167037223|ref|YP_001664801.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167040637|ref|YP_001663622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermoanaerobacter sp. X514]
gi|300914678|ref|ZP_07131994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
X561]
gi|307724088|ref|YP_003903839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
X513]
gi|320115642|ref|YP_004185801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166854877|gb|ABY93286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
X514]
gi|166856057|gb|ABY94465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|300889613|gb|EFK84759.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
X561]
gi|307581149|gb|ADN54548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
X513]
gi|319928733|gb|ADV79418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 483
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 136/375 (36%), Positives = 208/375 (55%), Gaps = 27/375 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I GD + S TTP+++ +Q L + M++ G + VVME SSH LAL R
Sbjct: 130 KVGLVGTIQNMI-GDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALNRVD 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E +FDIA+FTNL++DH+DFH EEY K+KLF + V+NIDD ++ I
Sbjct: 189 ECEFDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFKMA----KRASVINIDDKYSSMMIES 244
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
V+T+ +E+ A V SL + V E+S + G N+YN LAA
Sbjct: 245 SKA--KVLTYGIED-FAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLFNVYNALAA 301
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+ V +G L + + +V V GR E ++ + F V +DYAHTPD + ++++++E
Sbjct: 302 ITVADFLGISLRSVREALSQV-TVKGRFEPVETGKDFYVFIDYAHTPDGIQNIMEALKEY 360
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
R I + G G+ D+ KRPLM ++A +D ILTSDNP +EDP +I+ + G+ T
Sbjct: 361 KTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEDPREIISQIEEGIKKT 420
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
N Y + N R+ A+R A+ ++ D++++AGKGHETYQI G+
Sbjct: 421 ---------NCPYVVIEN---------RKEAIRYALTNAQKDDVIILAGKGHETYQIIGN 462
Query: 364 KKEFFDDREESREAL 378
K FD+RE +E L
Sbjct: 463 KVIPFDEREIVKEIL 477
>gi|340351808|ref|ZP_08674709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella pallens ATCC 700821]
gi|339616669|gb|EGQ21311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella pallens ATCC 700821]
Length = 486
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 140/380 (36%), Positives = 198/380 (52%), Gaps = 32/380 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D + + TTPD + + L+AKM+ G E ME SSH +
Sbjct: 130 FGYKVGLLSTVCNYID-DKAVPADHTTPDPIELNELLAKMVAEGCEYAFMECSSHAIHQH 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F A+FTNLTRDH+D+H T E YRNAK K+F +D + + N DD N
Sbjct: 189 RIGGLRFTGALFTNLTRDHLDYHKTFENYRNAK-KMFFDDLDKDAF-AITNADDKNGMIM 246
Query: 121 IAQGNPDVPVVTFA-MENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + + M + +A + FE E E+ +G+ N+ N
Sbjct: 247 VQNCKAQIKTYSIKRMADFRARILECHFEGMYLEIDG--------KEVGVQFIGKFNVSN 298
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA I +G EDI+ + + +V GR E I + IVDYAHTPDAL L +
Sbjct: 299 LLAVYGAAIMLGEKAEDILVALSTLKSVNGRLEPIASPNGYTAIVDYAHTPDALVNTLLA 358
Query: 240 VRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ E+ + +ITV G G D+GKRPLM A S+ ILTSDNP NEDP I+DDM
Sbjct: 359 IHEVLDGKGGHVITVCGAGGNRDKGKRPLMALEAVKHSNKVILTSDNPRNEDPQTIIDDM 418
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
LAG+ T ++ + + + D R+ A+R A + ++GD++++AGKGHE
Sbjct: 419 LAGLDATQKKNV----------------ISIVD-RKEAIRTACMLAQKGDVILIAGKGHE 461
Query: 357 TYQIEGDKKEFFDDREESRE 376
TYQ K FDD E RE
Sbjct: 462 TYQEINGVKHHFDDHEVVRE 481
>gi|299147134|ref|ZP_07040201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 3_1_23]
gi|336417331|ref|ZP_08597655.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides ovatus 3_8_47FAA]
gi|298515019|gb|EFI38901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 3_1_23]
gi|335936077|gb|EGM98017.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides ovatus 3_8_47FAA]
Length = 482
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 135/388 (34%), Positives = 205/388 (52%), Gaps = 43/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DESIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G E+++ + + V GR + + Q IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGITAIVDYAHTPDALI 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ L + R+ A+R A + E+GD+++VA
Sbjct: 413 INDMLAGLDAEDMKKTLSIAD------------------RKEAIRTACMLAEKGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHE YQ K FDD+E +E +
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEVLKEIFK 482
>gi|293370478|ref|ZP_06617031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides ovatus SD CMC 3f]
gi|292634470|gb|EFF53006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides ovatus SD CMC 3f]
Length = 482
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 135/388 (34%), Positives = 205/388 (52%), Gaps = 43/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DESIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G E+++ + + V GR + + Q IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGITAIVDYAHTPDALI 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ L + R+ A+R A + E+GD+++VA
Sbjct: 413 INDMLAGLDAEDMKKTLSIAD------------------RKEAIRTACMLAEKGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHE YQ K FDD+E +E +
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEVLKEIFK 482
>gi|226941974|ref|YP_002797048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Laribacter hongkongensis HLHK9]
gi|226716901|gb|ACO76039.1| MurE [Laribacter hongkongensis HLHK9]
Length = 491
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 143/375 (38%), Positives = 194/375 (51%), Gaps = 31/375 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + ++ +V G ++ TTPD V VQ +A G V ME SSHGL
Sbjct: 132 LGQKAALIGTVGNGFFGALS-DATHTTPDPVTVQRTLADFRRQGAHVVAMEVSSHGLDQF 190
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + V F AVFTNLTRDH+D+HG+ Y K +LF V+N+DD
Sbjct: 191 RVNGVTFGTAVFTNLTRDHLDYHGSMAAYGATKERLFHWQ---GLQHAVINVDDQFGREL 247
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
++ V+T+ +E+ DV P+ SL + + TP G I S LGR N N+
Sbjct: 248 ASRCTAG-QVITYGLEH--GDVRPMAVHASLEGLAMELATPWGHGRIESAFLGRFNASNL 304
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +AV G PL R + ++ GR + + + V++DYAHTPDAL + L ++
Sbjct: 305 LACLAVLCVNGVPLTQACRVLGQIQPARGRMQRVGGTREPLVVIDYAHTPDALEKALSTL 364
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
++ P R+ V GC G+ DRGKRPLM IA +DVT++TSDNP E P I+DD+LA
Sbjct: 365 ADIKPAGGRLFAVFGCGGDRDRGKRPLMGDIAERFADVTVVTSDNPRTESPQVIIDDILA 424
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ Q E D RR A+ AVA GD+V+VAGKGHE Y
Sbjct: 425 GMRQPTQV-----EPD----------------RRAAIHWAVAQARVGDVVLVAGKGHEDY 463
Query: 359 Q-IEGDKKEFFDDRE 372
Q I+G K F D RE
Sbjct: 464 QDIQGVKHSFSDVRE 478
>gi|225848633|ref|YP_002728796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
ligase)(Meso-diaminopimelate-adding enzyme)
(Meso-A2pm-adding enzyme)
(UDP-N-acetylmuramyl-tripeptide synthetase)
(UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225644526|gb|ACN99576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
ligase)(Meso-diaminopimelate-adding enzyme)
(Meso-A2pm-adding enzyme)
(UDP-N-acetylmuramyl-tripeptide synthetase)
(UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 490
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 132/379 (34%), Positives = 199/379 (52%), Gaps = 25/379 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++Y I GD L S TTPD V + M G + VV E SSH R
Sbjct: 134 GYKVGVIGTINYRI-GDEILSSGHTTPDPVQWFETLNLMKEKGCDVVVAEVSSHAAHQFR 192
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-VDPERHRKVVNIDDPNATSF 120
F +FTNLT+DH+D+HGT E Y AK + F+++ + ++ VNIDDP
Sbjct: 193 VYSTLFHGGIFTNLTQDHLDYHGTMENYFLAKREFFNQIQLFNDKAIASVNIDDPYGKRI 252
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ +T+ E + + LSLFET + L + L G N+YN+
Sbjct: 253 YNDFKEKIDFITYGFE---GEFKIKDYNLSLFETLFNIEYKGKTLNFKTKLRGLFNVYNL 309
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
A+++ I G ++ + ++ + GR E++ E + F V++DYAHTPDAL +L S+
Sbjct: 310 SASISFLIKDGFDIDFLKDKTLDLKPIRGRFEVV-EAKDFIVVIDYAHTPDALENILKSL 368
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
++ R+ITV G G DR KRPLM K+A D SD+ ILTSDNP EDP I+ D+L G+
Sbjct: 369 NQIKQNRVITVFGAGGNRDRTKRPLMGKVAQDFSDIVILTSDNPRFEDPNQIIKDILEGI 428
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
++ + R+ A+ A+ ++GD+V++AGKGHE YQI
Sbjct: 429 -------------------TQKSKVIVEPDRKKAIEYAIKTAQKGDIVLIAGKGHENYQI 469
Query: 361 EGDKKEFFDDREESREALQ 379
D+ FDD+E + L+
Sbjct: 470 IKDQVIPFDDKEVVNQILK 488
>gi|255320231|ref|ZP_05361416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter
radioresistens SK82]
gi|255302670|gb|EET81902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter
radioresistens SK82]
Length = 499
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 203/363 (55%), Gaps = 27/363 (7%)
Query: 21 LESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM 80
+ S TT DA+ +QN + G V +EASSHGL GR + + +IA+++NL+RDH+
Sbjct: 147 VASTHTTLDALQLQNALHDFSSQGANFVALEASSHGLEQGRLNGCEIEIAIYSNLSRDHL 206
Query: 81 DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMEN 137
D+HGT Y +AKA LF V+N+DD A + AQ NP P ++T+++++
Sbjct: 207 DYHGTLTAYADAKALLFKFAT---LRSAVINLDDDYAPVMLETAQANPARPKILTYSLQH 263
Query: 138 KKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDI 197
+AD SL + + P G + S LLG+ NI N++A++ G L DI
Sbjct: 264 PEADYRVSDIHYSLKGAKFKLIAPTGEYVVQSPLLGQFNIENLVASLIAVEQAGFKLSDI 323
Query: 198 VRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAG 256
+ + ++ PGR ++I D E+ F +VDYAHTPDAL+++L +++ ++ + GC G
Sbjct: 324 LATVPQLKGAPGRMQVIRDAERLF--VVDYAHTPDALTQVLVTLKRHVQHQLWAIFGCGG 381
Query: 257 ESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYY 316
+ DRGKRPLMT+ A + +D ILTSDNP E P I D M+ + +G
Sbjct: 382 DRDRGKRPLMTQAALNDADPVILTSDNPRTESPEQIFTD--------MKHEVDFG----- 428
Query: 317 PPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESRE 376
N H + D RR A++ AV + GD+VV+AGKGHE YQ + +FDD E +
Sbjct: 429 ----NHHVQEIRD-RREAIKYAVQQAQAGDIVVIAGKGHENYQEIDGVRHWFDDVVEVQS 483
Query: 377 ALQ 379
AL+
Sbjct: 484 ALE 486
>gi|163752981|ref|ZP_02160105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Kordia algicida OT-1]
gi|161326713|gb|EDP98038.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Kordia algicida OT-1]
Length = 487
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 136/390 (34%), Positives = 206/390 (52%), Gaps = 41/390 (10%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+LS+V + D + ++ TTPD++ + + + KM H G E ME SSHG+ R
Sbjct: 131 GYKVGLLSTVKILVD-DKEYKATHTTPDSLTINSYLQKMNHEGVEYCFMEVSSHGIHQKR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ + F +FTNL+ DH+D+H T EYR+ K K F + P+ +VNIDD N +
Sbjct: 190 TAGLVFQGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDEL--PKEAFCLVNIDDKNG--LV 245
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGRH 175
N T+A++ AD + Q+L N G+L E+ + L+G
Sbjct: 246 MMQNTKAKKYTYALKT-YAD----------YRAQILENRLAGLLLKINDNEVWTKLIGSF 294
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N YN+L+ A +G +I+R I E+++V GR E + IVDYAHTPDAL
Sbjct: 295 NAYNLLSIYATAELLGLEEIEILRLISELESVSGRFEYFISKNKITTIVDYAHTPDALKN 354
Query: 236 LLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L+++ + ++ITVVGC G+ D KRP M IA+ S I TSDNP +EDP+ I+
Sbjct: 355 VLETINNIRTGNEQLITVVGCGGDRDTTKRPKMGNIASTLSTKAIFTSDNPRSEDPMTII 414
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
+ + GV P L + D R+ A++ A M E D++++AGK
Sbjct: 415 EAIEKGV----------------EPQNYKKTLSITD-RKQAIKTACQMANENDIILIAGK 457
Query: 354 GHETYQIEGDKKEFFDDREESREALQYVDE 383
GHETYQ K+ FDD + ++E L ++E
Sbjct: 458 GHETYQEINGKRSDFDDYKIAKEILDNLNE 487
>gi|423281157|ref|ZP_17260068.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis HMW 610]
gi|404583321|gb|EKA88002.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis HMW 610]
Length = 485
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 136/384 (35%), Positives = 205/384 (53%), Gaps = 41/384 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGRMADEGCKYAFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEL--PKSSFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N + T+++ + LS F+ +VL + G+L E++ +GR
Sbjct: 244 VMTQNTKSKIYTYSLRS-----------LSDFKGKVLESHFEGMLLDFNNHELAVQFIGR 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G E+++ + + V GR + I Q + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGGAVLLGKKEEEVLVALSTLHPVAGRFDAIRSPQGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG+ +N+ L + D R+ A+R A + E+GD+++VAG
Sbjct: 413 INDMLAGL-----------DNE-----DKKKTLSIAD-RKEAIRTACMLAEKGDVILVAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESRE 376
KGHE YQ K FDD+E +E
Sbjct: 456 KGHENYQEIKGVKHHFDDKEVLKE 479
>gi|434387884|ref|YP_007098495.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chamaesiphon minutus PCC
6605]
gi|428018874|gb|AFY94968.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chamaesiphon minutus PCC
6605]
Length = 504
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 208/387 (53%), Gaps = 35/387 (9%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
+ T +L ++ G K + TTP AV +Q +A+ L G++ +ME SSH L GR
Sbjct: 136 ISTALLGTLYTRWQGYQKTAT-HTTPFAVDLQQQLAQALAAGSKVALMEVSSHALDQGRV 194
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPE--RHRKVVNIDDPNATSF 120
F++ VFTNLT+DH+D+H E Y AKA LFS PE R +VN+DD
Sbjct: 195 MGCPFEVGVFTNLTQDHLDYHQNMENYFQAKALLFS----PEYLTGRAIVNLDDEYGKRL 250
Query: 121 IAQGNPDVP-------VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLG 173
I Q + D V +++ + AD+ + S ++TP G ++ SS L+G
Sbjct: 251 IGQISADSRSERLRQRVWSYSTTDATADLWTSELAYSQTGVSGKLHTPQGEIDFSSPLVG 310
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE--LIDEEQAFGVIVDYAHTPD 231
+N+ N+LAAV + +G LE IV IE VPGR E I +Q IVDYAHTPD
Sbjct: 311 DYNLENLLAAVGTALHLGMSLEPIVAAIENFPGVPGRMERVQISPQQDITAIVDYAHTPD 370
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
+L LL + R ++I V GC G+ DR KRP M KIA D +D+ ++TSDNP EDP
Sbjct: 371 SLESLLTAARPFIHGKVICVFGCGGDRDRTKRPQMGKIAADLADLVVVTSDNPRTEDPAR 430
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL D++AG+ T G + R A+ A+AM GD V++A
Sbjct: 431 ILQDVVAGIDRTA-----------------GVEVIAD--RAQAIAQAIAMAAPGDGVLIA 471
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI G +K FDDRE++R AL
Sbjct: 472 GKGHEDYQILGTEKIHFDDREQARAAL 498
>gi|255101832|ref|ZP_05330809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile QCD-63q42]
gi|255307699|ref|ZP_05351870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile ATCC 43255]
Length = 484
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 196/389 (50%), Gaps = 49/389 (12%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ + G+ + S TTP+++ +Q ML NG + ME SSH LAL R
Sbjct: 130 KVGLIGTIKIF-DGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEVSSHSLALNRVD 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E DF + +FTNLT DH+DFH E+YR AK KLF + ++NIDD
Sbjct: 189 ETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFKTT----MANIINIDDEGGKKIYEN 244
Query: 124 -GNPDVPVVTFAMENK--------KADVHPLKFELSL--FETQVLVNTPHGILEISSGLL 172
+VP T+ ++ K K+D + + L +E + + P
Sbjct: 245 IKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP----------- 293
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
G +YN LA +A +G P G+ + V GR E + ++ VIVDYAHTPDA
Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVPNDKGISVIVDYAHTPDA 353
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L +L + ++ A +II+V GC G+ D KRPLM I SD+ I+TSDNP E+P I
Sbjct: 354 LENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIITSDNPRTEEPEAI 413
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVV 350
+ D+L G+ + Y H + R A+ A++M ++ D+V++
Sbjct: 414 IKDILEGIDKKKENY--------------------HVVVDREQAIAEAISMAKKDDVVII 453
Query: 351 AGKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHETYQI G K FDD+E + E L
Sbjct: 454 TGKGHETYQIIGKVKHHFDDKEVANECLS 482
>gi|423092702|ref|ZP_17080506.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Clostridium difficile
70-100-2010]
gi|357553572|gb|EHJ35319.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Clostridium difficile
70-100-2010]
Length = 484
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 196/389 (50%), Gaps = 49/389 (12%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ + G+ + S TTP+++ +Q ML NG + ME SSH LAL R
Sbjct: 130 KVGLIGTIKIF-DGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEVSSHSLALNRVD 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E DF + +FTNLT DH+DFH E+YR AK KLF + ++NIDD
Sbjct: 189 ETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFKTT----MANIINIDDEGGKKIYEN 244
Query: 124 -GNPDVPVVTFAMENK--------KADVHPLKFELSL--FETQVLVNTPHGILEISSGLL 172
+VP T+ ++ K K+D + + L +E + + P
Sbjct: 245 IKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP----------- 293
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
G +YN LA +A +G P G+ + V GR E + ++ VIVDYAHTPDA
Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVPNDKGISVIVDYAHTPDA 353
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L +L + ++ A +II+V GC G+ D KRPLM I SD+ I+TSDNP E+P I
Sbjct: 354 LENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIITSDNPRTEEPEAI 413
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVV 350
+ D+L G+ + Y H + R A+ A++M ++ D+V++
Sbjct: 414 IKDILEGIDKKKENY--------------------HVVVDREQAIAEAISMAKKDDVVII 453
Query: 351 AGKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHETYQI G K FDD+E + E L
Sbjct: 454 TGKGHETYQIIGKVKHHFDDKEVANECLS 482
>gi|404404886|ref|ZP_10996470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Alistipes sp. JC136]
Length = 485
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 200/381 (52%), Gaps = 31/381 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G++S+V Y I G ++ES TTPD + + +M +M G E ME SSH +
Sbjct: 130 MGYKAGLISTVVYKIDG-REVESTHTTPDPIRLNAMMREMADAGCEFCFMECSSHAIVQE 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R +DF +F+N+T DH+D+H T EY AK F + P+ + N DD N
Sbjct: 189 RTRGLDFAGGIFSNITHDHLDYHKTFAEYIRAKKLFFDGL--PKGAFALTNADDRNGRVM 246
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N V T+++ AD E+ L + ++ E+ GLLGR N YN+
Sbjct: 247 VQ--NTAAAVSTYSL-RAMADFRCKIVEMHLDGMLLRIDGQ----ELWVGLLGRFNAYNL 299
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +G +++R + + AV GR E + IVDYAHTPDAL ++ ++
Sbjct: 300 LAVYGAAALLGLDRGEVLRVLSVLHAVSGRFEKVRAANGTTAIVDYAHTPDALENVIQTI 359
Query: 241 RELAP--RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ +++I V GC G+ DR KRP M +IA + I TSDNP +E P ILDDM A
Sbjct: 360 EEIRTPEQQLIVVCGCGGDRDRTKRPEMAQIAVKYASTAIFTSDNPRHESPEAILDDMAA 419
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ ++ YL+ + R A+R AV + GD+++VAGKGHETY
Sbjct: 420 GLDPGVR-YLRIAD------------------RAEAIRTAVMLSRPGDILLVAGKGHETY 460
Query: 359 QIEGDKKEFFDDREESREALQ 379
Q+ GD K FDDREE R A +
Sbjct: 461 QVVGDVKHHFDDREEVRRAFE 481
>gi|254976257|ref|ZP_05272729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile QCD-66c26]
gi|255093643|ref|ZP_05323121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile CIP 107932]
gi|255315392|ref|ZP_05356975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile QCD-76w55]
gi|255518057|ref|ZP_05385733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile QCD-97b34]
gi|255651173|ref|ZP_05398075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile QCD-37x79]
gi|260684239|ref|YP_003215524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile CD196]
gi|260687898|ref|YP_003219032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile R20291]
gi|306521020|ref|ZP_07407367.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile QCD-32g58]
gi|384361881|ref|YP_006199733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile BI1]
gi|260210402|emb|CBA64803.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
te ligase [Clostridium difficile CD196]
gi|260213915|emb|CBE05965.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
te ligase [Clostridium difficile R20291]
Length = 484
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 196/389 (50%), Gaps = 49/389 (12%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ + G+ + S TTP+++ +Q ML NG + ME SSH LAL R
Sbjct: 130 KVGLIGTIKIF-DGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEVSSHSLALNRVD 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E DF + +FTNLT DH+DFH E+YR AK KLF + ++NIDD
Sbjct: 189 ETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFKTT----MANIINIDDEGGKKIYEN 244
Query: 124 -GNPDVPVVTFAMENK--------KADVHPLKFELSL--FETQVLVNTPHGILEISSGLL 172
+VP T+ ++ K K+D + + L +E + + P
Sbjct: 245 IKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP----------- 293
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
G +YN LA +A +G P G+ + V GR E + ++ VIVDYAHTPDA
Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVPNDKGISVIVDYAHTPDA 353
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L +L + ++ A +II+V GC G+ D KRPLM I SD+ I+TSDNP E+P I
Sbjct: 354 LENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIITSDNPRTEEPEAI 413
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVV 350
+ D+L G+ + Y H + R A+ A++M ++ D+V++
Sbjct: 414 IKDILEGIDKKKENY--------------------HVVVDREQAIAEAISMAKKDDVVII 453
Query: 351 AGKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHETYQI G K FDD+E + E L
Sbjct: 454 TGKGHETYQIIGKVKHHFDDKEVANECLS 482
>gi|407796616|ref|ZP_11143569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Salimicrobium sp. MJ3]
gi|407019132|gb|EKE31851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Salimicrobium sp. MJ3]
Length = 487
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 209/383 (54%), Gaps = 38/383 (9%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ I + + TTPDAV + KM + +ME SSH L GR
Sbjct: 131 TGVIGTIQTKI-SEQTYDVSNTTPDAVSLNRFFHKMTEEDVDVAMMEVSSHALDQGRVYG 189
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD----PERHRKVVNIDDPNATSF 120
+DFD+AVFTNL++DH+D+H ++Y AK+ LFS++ + ++ V+N DD A
Sbjct: 190 LDFDVAVFTNLSQDHLDYHKDMDDYLRAKSLLFSQLGNHYDNGKKKFAVINRDDAAADIL 249
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I PV+T+ +E + D+H L S + TP G +E+SS L+G ++YN+
Sbjct: 250 IKSSAQ--PVLTYGLE--QGDIHALDIRTSETGISFTMVTPAGNVEVSSSLIGTFSVYNM 305
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA IA G LE I VPGR E + Q++G++VDYAHTPD+L +L ++
Sbjct: 306 LAAAGAAIARGVGLETIASAFARTKGVPGRLEPVSAGQSYGIVVDYAHTPDSLENVLKTL 365
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM---L 297
+ + + V+GC GE D GKRP M IA +D TSDNP +EDP IL+DM L
Sbjct: 366 KGVCEGDLRVVIGCGGERDTGKRPAMADIAMTFADDVYFTSDNPRSEDPESILNDMTDHL 425
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
+G EY + + R+ A+R AV D++++AGKGHET
Sbjct: 426 SG------EYRRITD------------------RKEAIRRAVTSCRSKDILLIAGKGHET 461
Query: 358 YQ-IEGDKKEFFDDREESREALQ 379
YQ I G+K + FDDR+ + ++++
Sbjct: 462 YQEINGEKID-FDDRKIAEQSVK 483
>gi|307564672|ref|ZP_07627202.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella amnii CRIS 21A-A]
gi|307346600|gb|EFN91907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella amnii CRIS 21A-A]
Length = 485
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 201/379 (53%), Gaps = 30/379 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI + + TTPD + + L++KM+ G E ME SSH +
Sbjct: 129 FGYKVGLLSTVCNYIDAEAH-HTEHTTPDPIELNQLLSKMVEAGCEYAFMECSSHAIHQH 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YRNAK F + P++ + N DD N
Sbjct: 188 RIGGLYFTGGIFTNLTRDHLDYHKTFENYRNAKKMFFDSL--PKKAFAITNADDKNG--M 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I N + T++++ + AD E + ++ E+ +G+ N+ N+
Sbjct: 244 IMVQNCKANIKTYSIQ-RMADFRARIIECHFEGMYLDIDGK----EVGVQFIGKFNVSNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA + +G +DI+ + + +V GR E I + F IVDYAHTPDALS +L ++
Sbjct: 299 LAVYGAAVMLGKSKDDILLVLSTLKSVNGRLEPIRSPEGFTAIVDYAHTPDALSNVLSAI 358
Query: 241 RELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ + IITV G G D+GKRPLM + A SDV ILTSDNP EDP DI++DM+
Sbjct: 359 HDVMEGKTGQIITVCGAGGNRDKGKRPLMAQEAVKHSDVVILTSDNPRFEDPQDIINDMV 418
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AG+ T + L + D RR A+R A + ++GD+++VAGKGHE
Sbjct: 419 AGLDETQLNKV----------------LTIVD-RREAMRTAAKLAKKGDVILVAGKGHED 461
Query: 358 YQIEGDKKEFFDDREESRE 376
YQ K FDD E R+
Sbjct: 462 YQEIKGVKHHFDDHEVLRD 480
>gi|126700278|ref|YP_001089175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile 630]
gi|123174038|sp|Q182Z8.1|MURE_CLOD6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|115251715|emb|CAJ69550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium difficile
630]
Length = 484
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 196/389 (50%), Gaps = 49/389 (12%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ + G+ + S TTP+++ +Q ML NG + ME SSH LAL R
Sbjct: 130 KVGLIGTIKIF-DGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEVSSHSLALNRVD 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E DF + +FTNLT DH+DFH E+YR AK KLF + ++NIDD
Sbjct: 189 ETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFKTT----MANIINIDDEGGKKIYEN 244
Query: 124 -GNPDVPVVTFAMENK--------KADVHPLKFELSL--FETQVLVNTPHGILEISSGLL 172
+VP T+ ++ K K+D + + L +E + + P
Sbjct: 245 IKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP----------- 293
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
G +YN LA +A +G P G+ + V GR E + ++ VIVDYAHTPDA
Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVPNDKGISVIVDYAHTPDA 353
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L +L + ++ A +II+V GC G+ D KRPLM I SD+ I+TSDNP E+P I
Sbjct: 354 LENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIITSDNPRTEEPEAI 413
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVV 350
+ D+L G+ + Y H + R A+ A++M ++ D+V++
Sbjct: 414 IKDILEGIDKKKENY--------------------HVVVDREQAIAEAISMAKKDDVVII 453
Query: 351 AGKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHETYQI G K FDD+E + E L
Sbjct: 454 TGKGHETYQIIGKVKHHFDDKEVANECLS 482
>gi|15599613|ref|NP_253107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa PAO1]
gi|418583944|ref|ZP_13148010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa MPAO1/P1]
gi|418589682|ref|ZP_13153603.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa MPAO1/P2]
gi|421518970|ref|ZP_15965643.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa PAO579]
gi|12230930|sp|Q59650.2|MURE_PSEAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|9950649|gb|AAG07805.1|AE004856_16 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Pseudomonas aeruginosa PAO1]
gi|375046423|gb|EHS38984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa MPAO1/P1]
gi|375051538|gb|EHS44005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa MPAO1/P2]
gi|404346375|gb|EJZ72725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa PAO579]
Length = 487
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 139/379 (36%), Positives = 204/379 (53%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ +G LES R TTPD + VQ +A + G AV ME SSHGL
Sbjct: 126 LGERCGIVGTLGTGFYG--ALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FDIAVFTNL+RDH+D+HG+ E Y AKAKLF+ P +V+N+DD
Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAW---PGLRCRVINLDDDFGRR 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ D ++T+++ + A ++ + + + TPHG + S LLGR N+ N
Sbjct: 241 LAGE-EQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + +G PL DI+R + ++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 300 LLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDALEKVLEA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM IA +D ++T DNP E I+ D+ G
Sbjct: 360 LRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEASAAIIADIRKG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ D LP+ H I AV D+V++AGKGHE YQ
Sbjct: 420 ----------FAAADKVTFLPSRGEAIAHLIASAAVD---------DVVLLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREAL 378
+ F D E++ AL
Sbjct: 461 EIDGVRHPFSDIEQAERAL 479
>gi|421170166|ref|ZP_15628140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa ATCC 700888]
gi|404524239|gb|EKA34590.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa ATCC 700888]
Length = 487
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 139/379 (36%), Positives = 204/379 (53%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ +G LES R TTPD + VQ +A + G AV ME SSHGL
Sbjct: 126 LGERCGIVGTLGTGFYG--ALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FDIAVFTNL+RDH+D+HG+ E Y AKAKLF+ P +V+N+DD
Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAW---PGLRCRVINLDDDFGRR 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ D ++T+++ + A ++ + + + TPHG + S LLGR N+ N
Sbjct: 241 LAGE-EQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + +G PL DI+R + ++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 300 LLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDALEKVLEA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM IA +D ++T DNP E I+ D+ G
Sbjct: 360 LRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ D LP+ H I AV D+V++AGKGHE YQ
Sbjct: 420 ----------FAAADKVTFLPSRGEAIAHLIASAAVD---------DVVLLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREAL 378
+ F D E++ AL
Sbjct: 461 EIDGVRHPFSDIEQAERAL 479
>gi|375254187|ref|YP_005013354.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Tannerella forsythia ATCC 43037]
gi|363408276|gb|AEW21962.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Tannerella forsythia ATCC 43037]
Length = 487
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 138/377 (36%), Positives = 205/377 (54%), Gaps = 29/377 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G++S+V YI G + + TTPDAV + L+A+M G V ME SSH +
Sbjct: 130 LGYKCGLISTVCNYI-GQEAIPTTHTTPDAVTLHALVAQMAEAGCSYVFMEVSSHAIDQQ 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + + VFTNL+RDH+D+H T E Y AK K F + P + N+D+ +
Sbjct: 189 RISGLTYRGGVFTNLSRDHLDYHKTVEHYLEAKKKFFDDL--PASAFALTNVDEKSGMVM 246
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N T++++ AD E T++L+N E++ +GR N N+
Sbjct: 247 LQ--NTAATKRTYSLQT-VADFKGKILETHFEGTELLINDR----EVAVHFVGRFNASNL 299
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +++G E ++ + ++ V GR E + + IVDYAHTPDAL+ +L+S+
Sbjct: 300 LAVYGTAVSLGQDPETVLVVLSDLRPVTGRFETLSSPLGYTAIVDYAHTPDALTNVLNSI 359
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
++ R+ITVVG G D+GKRPLM K A SD ILTSDNP EDP I+++MLA
Sbjct: 360 HDVLRGNGRVITVVGAGGNRDKGKRPLMAKEAAKLSDRLILTSDNPRFEDPDAIIEEMLA 419
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ P+ + H L + D R+ A++ AV + ++GD+++VAGKGHE Y
Sbjct: 420 GL----------------SPVDSEHTLCITD-RKQAIKTAVCLAKKGDVILVAGKGHEDY 462
Query: 359 QIEGDKKEFFDDREESR 375
Q K FDDRE R
Sbjct: 463 QEINGIKHHFDDREILR 479
>gi|397685938|ref|YP_006523257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri DSM 10701]
gi|395807494|gb|AFN76899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri DSM 10701]
Length = 487
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 210/370 (56%), Gaps = 25/370 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G R G++ ++ HG+ L TTPDA+ VQ +A + G AV ME SSHGLA G
Sbjct: 126 LGERCGIIGTLGTGFHGELVL-GRHTTPDAIGVQANLASLRKEGARAVAMEVSSHGLAQG 184
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + FD+AVFTNL+RDH+D+HG+ E Y KA LF+ P +V+N+DD +
Sbjct: 185 RVAALAFDVAVFTNLSRDHLDYHGSMEAYGAVKASLFAM---PGLSCRVINLDDAFGRTL 241
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
A + ++T+++E+ A ++ + L + + TP G S LLGR N+ N+
Sbjct: 242 AAV-EAESRLITYSLEDASAYLYCPEAHLDDEGIRARLITPQGERSWRSPLLGRFNVSNV 300
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA+ + + PL++I+ + E+ GR + + + V+VDYAHTPDAL ++L+++
Sbjct: 301 LAAIGALLGMNYPLDEILAVLPELQGPIGRMQRLGGGERPLVVVDYAHTPDALEKVLEAL 360
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R +++ + GC G+ DRGKRPLM +A +D ++T DNP NEDP I D++ G
Sbjct: 361 RPHTRGKLLCLFGCGGDRDRGKRPLMAAVAERLADEVVVTDDNPRNEDPSQIRDEIRGG- 419
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ- 359
+T E +++ +P R A+ +A D++++AGKGHE YQ
Sbjct: 420 -FTAPERVRF--------IPG---------RGQAIAACIAGSRLDDVLLLAGKGHEDYQE 461
Query: 360 IEGDKKEFFD 369
I+G+++ F D
Sbjct: 462 IKGERQPFSD 471
>gi|107099998|ref|ZP_01363916.1| hypothetical protein PaerPA_01001019 [Pseudomonas aeruginosa PACS2]
Length = 485
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 139/379 (36%), Positives = 204/379 (53%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ +G LES R TTPD + VQ +A + G AV ME SSHGL
Sbjct: 124 LGERCGIVGTLGTGFYG--ALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 181
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FDIAVFTNL+RDH+D+HG+ E Y AKAKLF+ P +V+N+DD
Sbjct: 182 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAW---PGLRCRVINLDDDFGRR 238
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ D ++T+++ + A ++ + + + TPHG + S LLGR N+ N
Sbjct: 239 LAGE-EQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSN 297
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + +G PL DI+R + ++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 298 LLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDALEKVLEA 357
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM IA +D ++T DNP E I+ D+ G
Sbjct: 358 LRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKG 417
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ D LP+ H I AV D+V++AGKGHE YQ
Sbjct: 418 ----------FAAADKVTFLPSRGEAIAHLIASAAVD---------DVVLLAGKGHEDYQ 458
Query: 360 IEGDKKEFFDDREESREAL 378
+ F D E++ AL
Sbjct: 459 EIDGVRHPFSDIEQAERAL 477
>gi|116052451|ref|YP_792763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa UCBPP-PA14]
gi|218893508|ref|YP_002442377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa LESB58]
gi|254238920|ref|ZP_04932243.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Pseudomonas aeruginosa C3719]
gi|296391126|ref|ZP_06880601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa PAb1]
gi|313106947|ref|ZP_07793150.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
39016]
gi|386060569|ref|YP_005977091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa M18]
gi|386064138|ref|YP_005979442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa NCGM2.S1]
gi|392985981|ref|YP_006484568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa DK2]
gi|416859395|ref|ZP_11913826.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa 138244]
gi|416876464|ref|ZP_11919269.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa 152504]
gi|419751962|ref|ZP_14278371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa PADK2_CF510]
gi|421155781|ref|ZP_15615247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa ATCC 14886]
gi|421162762|ref|ZP_15621569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa ATCC 25324]
gi|421176558|ref|ZP_15634221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa CI27]
gi|424944818|ref|ZP_18360581.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Pseudomonas aeruginosa NCMG1179]
gi|451986251|ref|ZP_21934440.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa 18A]
gi|115587672|gb|ABJ13687.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126170851|gb|EAZ56362.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Pseudomonas aeruginosa C3719]
gi|218773736|emb|CAW29550.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Pseudomonas aeruginosa LESB58]
gi|310879652|gb|EFQ38246.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
39016]
gi|334838464|gb|EGM17183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa 138244]
gi|334840742|gb|EGM19388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa 152504]
gi|346061264|dbj|GAA21147.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Pseudomonas aeruginosa NCMG1179]
gi|347306875|gb|AEO76989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa M18]
gi|348032697|dbj|BAK88057.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Pseudomonas aeruginosa NCGM2.S1]
gi|384401539|gb|EIE47893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa PADK2_CF510]
gi|392321486|gb|AFM66866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa DK2]
gi|404519958|gb|EKA30667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa ATCC 14886]
gi|404530892|gb|EKA40875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa CI27]
gi|404533368|gb|EKA43198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa ATCC 25324]
gi|451756147|emb|CCQ86963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa 18A]
gi|453046245|gb|EME93962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa PA21_ST175]
Length = 487
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 139/379 (36%), Positives = 204/379 (53%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ +G LES R TTPD + VQ +A + G AV ME SSHGL
Sbjct: 126 LGERCGIVGTLGTGFYG--ALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FDIAVFTNL+RDH+D+HG+ E Y AKAKLF+ P +V+N+DD
Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAW---PGLRCRVINLDDDFGRR 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ D ++T+++ + A ++ + + + TPHG + S LLGR N+ N
Sbjct: 241 LAGE-EQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + +G PL DI+R + ++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 300 LLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDALEKVLEA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM IA +D ++T DNP E I+ D+ G
Sbjct: 360 LRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ D LP+ H I AV D+V++AGKGHE YQ
Sbjct: 420 ----------FAAADKVTFLPSRGEAIAHLIASAAVD---------DVVLLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREAL 378
+ F D E++ AL
Sbjct: 461 EIDGVRHPFSDIEQAERAL 479
>gi|421182475|ref|ZP_15639951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa E2]
gi|404542062|gb|EKA51401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa E2]
Length = 487
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 139/379 (36%), Positives = 207/379 (54%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ +G LES R TTPD + VQ +A + G AV ME SSHGL
Sbjct: 126 LGERCGIVGTLGTGFYG--ALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FDIAVFTNL+RDH+D+HG+ E Y AKAKLF+ P +V+N+DD
Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAW---PGLRCRVINLDDDFGRR 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ D ++T+++ + A ++ + + + TPHG + S LLGR N+ N
Sbjct: 241 LAGE-EQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + +G PL DI+R + ++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 300 LLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDALEKVLEA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM IA +D ++T DNP E I+ D+
Sbjct: 360 LRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRK- 418
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
G+T + + + LP+ H I AV D+V++AGKGHE YQ
Sbjct: 419 -GFTAADKVTF--------LPSRGEAIAHLIASAAVD---------DVVLLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREAL 378
+ F D E++ AL
Sbjct: 461 EIDGVRHPFSDIEQAERAL 479
>gi|159477677|ref|XP_001696935.1| hypothetical protein CHLREDRAFT_192674 [Chlamydomonas reinhardtii]
gi|158274847|gb|EDP00627.1| predicted protein [Chlamydomonas reinhardtii]
Length = 513
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 212/394 (53%), Gaps = 34/394 (8%)
Query: 34 QNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLT--------RDHMDFHGT 85
Q ++A M G V+E + GL LG + ++AV T+L+ + +
Sbjct: 92 QKVLAGMRDRGAGVAVVELQADGLMLGTYDFMSLNVAVVTSLSPRPGVPAAQQPAELVAA 151
Query: 86 EEEYRNAKAKLFS-RMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHP 144
+ +A +L S R+VDPE V+N DDP A + + VPVVT+ + NK ADV
Sbjct: 152 AADEVHAAIELLSARLVDPETQALVLNADDPAAEQLLERLGGAVPVVTYGVVNKGADVVA 211
Query: 145 LKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEV 204
+ +++ET+++V TP G L+I + LLGRHN+ N+LAAVA G+A+ APL IV GIE V
Sbjct: 212 ESIKSNIWETELIVRTPGGRLQIITNLLGRHNVANVLAAVATGVALKAPLASIVAGIEAV 271
Query: 205 DAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRP 264
+ +PGR E+IDE Q F V+VD A TP+AL +LD++R R+I TV GC+G D RP
Sbjct: 272 E-IPGRSEVIDEGQEFSVVVDAARTPEALGDMLDALRAGGARQIFTVFGCSGNEDASIRP 330
Query: 265 LMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNG-- 322
M +A KSD I+T++NP EDP ++ D++AG M +Y Y+P G
Sbjct: 331 RMGAVAHAKSDYVIITNENPRLEDPAKVVADIVAGFPDDMVN--RYSAYAYFPFQDQGRT 388
Query: 323 --------------HRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDK---- 364
++ ++ + R A+R A+ D+V++AGKG E + D+
Sbjct: 389 PLWFEPYLQKAQRDNKRYVMEDRYSAIRAAIGTAGPEDVVLLAGKGSEDWVEHADEDGSV 448
Query: 365 -KEFFDDREESREALQYVDELHQAGIDTSE-FPW 396
+ DDR E+R AL + L Q + E PW
Sbjct: 449 LTGWLDDRVEARNALSKLKYLKQIPRFSRETLPW 482
>gi|86740116|ref|YP_480516.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Frankia sp. CcI3]
gi|86566978|gb|ABD10787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Frankia sp. CcI3]
Length = 544
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 155/384 (40%), Positives = 206/384 (53%), Gaps = 27/384 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ I D +L S RTTP+A +Q L+A M+ G A ME SSH LAL R
Sbjct: 185 GHTTGLIGTIETRI-ADERLASARTTPEASDLQALLATMVERGVGAATMEVSSHALALHR 243
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
+ F AVFTNL++DH+DFH + E+Y AKA LF DP R V+ + D
Sbjct: 244 ADALHFAGAVFTNLSQDHLDFHSSMEDYFAAKASLF----DPARTAVAVIGVAD-RWGRR 298
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI-LEISSGLLGRHNIYN 179
+A+ +P +TFA+E AD T + P G+ +++S L G N+ N
Sbjct: 299 LAERHPGA--ITFAVEGP-ADWTARDVSYGPTGTLLRAEGPDGLRVDLSVPLPGAFNVAN 355
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
L A+A+ +A+G P GI + VPGR E +D Q F +VD+AHTPDA++ LL++
Sbjct: 356 TLGALALLVAIGVPPATAAAGIGSLPGVPGRMERVDAGQPFLALVDFAHTPDAVTTLLET 415
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
VR L R+I V+GC G+ DRGKRPLM A +DV ILT+DNP +EDP +IL MLAG
Sbjct: 416 VRPLVKGRVIVVLGCGGDRDRGKRPLMGAAAATLADVAILTNDNPRSEDPAEILAQMLAG 475
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V E D R A+ AVA D VVVAGKGHE+ Q
Sbjct: 476 VTALSASATVLVEPD----------------RAAAIAAAVAEAGPQDAVVVAGKGHESGQ 519
Query: 360 IEGDKKEFFDDREESREALQYVDE 383
+ FDDR R AL V+
Sbjct: 520 EQAGVVTPFDDRVALRAALSSVER 543
>gi|383458064|ref|YP_005372053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Corallococcus coralloides DSM 2259]
gi|380733531|gb|AFE09533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Corallococcus coralloides DSM 2259]
Length = 512
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 199/377 (52%), Gaps = 12/377 (3%)
Query: 6 GMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEV 65
G++ ++ Y G E TTPD + + + +M+ G E VVME SSH LA R +
Sbjct: 138 GVIGTLGYKFGGKTT-ELANTTPDPLELHRIFREMVDAGVETVVMEVSSHALAQERVHGL 196
Query: 66 DFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGN 125
F A F+NL+RDH+D+H EEY K KLF + VVN DD A+ +
Sbjct: 197 TFKAAGFSNLSRDHLDYHKDLEEYFQVKRKLFLENLSAS-GTAVVNGDDTFASRVYTELR 255
Query: 126 PDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVA 185
+ ++ SL + + TP G +++ S LLG HN+ NI+ A
Sbjct: 256 NQKRMAWKFSRTGAGEISAADAAYSLKGIEATLKTPAGDIKVKSKLLGPHNLENIMLAAG 315
Query: 186 VGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQ---AFGVIVDYAHTPDALSRLLDSVRE 242
+ + G D+ GIE V V GR + + + A V+VDYAHT DAL R +++ R
Sbjct: 316 IALGAGISRSDVKSGIELVTGVAGRMDRAENHRGGPAPAVLVDYAHTDDALKRSIEAARA 375
Query: 243 LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGW 302
LA R+I V GC G+ D+GKRPLM +A + +D+ ++TSDNP EDP I+ ++ G+
Sbjct: 376 LAKGRVIVVFGCGGDRDKGKRPLMGTVAAEGADLVMVTSDNPRTEDPETIISEVTPGLEK 435
Query: 303 TMQEYLKYGENDYYPPLPNGHRLFLHDI-RRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
+ G+ NG + +L D RR A+ + + ++ D+V++AGKGHETYQ
Sbjct: 436 GGLRRISEGK------AKNGEKGYLVDADRRAAIEQVINLAKDDDVVLIAGKGHETYQTV 489
Query: 362 GDKKEFFDDREESREAL 378
G +K FDDRE + AL
Sbjct: 490 GTEKLKFDDREVAARAL 506
>gi|225019359|ref|ZP_03708551.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum
DSM 5476]
gi|224947990|gb|EEG29199.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum
DSM 5476]
Length = 479
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 132/379 (34%), Positives = 204/379 (53%), Gaps = 27/379 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G++ ++ I GD + + +TTPDA Q +++ M+ G E V++E SSH L
Sbjct: 123 LGCKVGLIGTIQNEI-GDQVIPTTKTTPDAGEFQKILSDMVEAGCEYVIIEVSSHALDQC 181
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R ++ F++A FTNLT+DH+D+H E+Y AKAKLF M D + V+ IDD
Sbjct: 182 RLADSHFEVAAFTNLTQDHLDYHKDMEDYFQAKAKLF-HMCD----KGVICIDDSYGRRL 236
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ + + TF+ E+ A E+ + + + T I + G G ++ N
Sbjct: 237 ALEAH--CSLRTFSAEDASASCFARNIEMDITGVRFEMVTGAVISRMQFGTPGLFSVRNA 294
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L A V + +G L+ +V GI + GR E+I + F V+ DYAHTPD L +L S+
Sbjct: 295 LCAALVCLDLGISLDSVVGGINACGHIKGRSEIIPTGRDFTVLCDYAHTPDGLVNILSSI 354
Query: 241 RELAPR-RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
E + R + V GC G+ DR KRP+M ++ +D+ I+TSDNP EDP I+D+++AG
Sbjct: 355 NEYKGKGRAVAVFGCGGDRDRKKRPIMGEVVARNADLLIVTSDNPRTEDPDAIIDEIVAG 414
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ T +L+ RR A+ AV + GD++++AGKGHE YQ
Sbjct: 415 IEPTGTPFLRITN------------------RREAIHYAVQHAQPGDIILLAGKGHEDYQ 456
Query: 360 IEGDKKEFFDDREESREAL 378
+ G +K FD+RE EAL
Sbjct: 457 VLGTQKVHFDEREVVAEAL 475
>gi|183221146|ref|YP_001839142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|189911237|ref|YP_001962792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167775913|gb|ABZ94214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167779568|gb|ABZ97866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 508
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 140/378 (37%), Positives = 199/378 (52%), Gaps = 35/378 (9%)
Query: 18 DNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTR 77
D LES TTPDA + L+ +ML G E V ME SSHGL LGR + ++ A FTNLT+
Sbjct: 150 DRILESGYTTPDASSLNLLLREMLDEGVEYVFMEISSHGLKLGRVAGIEITCAGFTNLTQ 209
Query: 78 DHMDFHGTEEEYRNAKAKLFSRMVDPERHRKV------VNIDDPNATSFIAQGNPDVPVV 131
DH+DFH + E+Y +K K+F + K V+ D I + P+
Sbjct: 210 DHLDFHESMEDYFESKFKIFQLLEQSSVKNKFGLVAGDVSFGD-RMIQRIRESKLKTPIY 268
Query: 132 TFAMENKKADVHPLKFELSLFETQVLV-----NTPH-GILEISSGLLGRHNIYNILAAVA 185
K + H +LSL ++ N P + I + LLG N++N A++
Sbjct: 269 ILG---KSGEFHYSNTKLSLLGSEYRFHKKEKNLPFIEVRSIRTNLLGNFNVFNTAFAMS 325
Query: 186 VGIAVGAPLEDIVRGIEEVDAVPGRCELID-EEQAFGVIVDYAHTPDALSRLLDSVRELA 244
+ +G P +++V IEE+ VPGR ++I ++ +VDYAHTPDAL +L S E+
Sbjct: 326 IAYELGFPWDEVVTAIEEIPTVPGRFQVIPYPDKTRIAVVDYAHTPDALENILKSCVEIR 385
Query: 245 PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTM 304
P+++I + GC G+ DR KRP M KIA +D LTSDNP EDP ILD++ +G
Sbjct: 386 PKQLICLFGCGGDRDRTKRPQMAKIAETLADFVFLTSDNPRTEDPESILDEIESGFSRGF 445
Query: 305 QEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDK 364
+ Y K + RRVA++ AV++ E+ ++VVAGKGHETYQI G +
Sbjct: 446 KRYEKITD------------------RRVAIQRAVSLLEKDGILVVAGKGHETYQIIGKE 487
Query: 365 KEFFDDREESREALQYVD 382
K F D E A +D
Sbjct: 488 KTNFVDFLEIENAFLNLD 505
>gi|160883880|ref|ZP_02064883.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483]
gi|423290576|ref|ZP_17269425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides ovatus CL02T12C04]
gi|423294148|ref|ZP_17272275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides ovatus CL03T12C18]
gi|156110610|gb|EDO12355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides ovatus ATCC 8483]
gi|392665229|gb|EIY58757.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides ovatus CL02T12C04]
gi|392676644|gb|EIY70075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides ovatus CL03T12C18]
Length = 482
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 135/388 (34%), Positives = 205/388 (52%), Gaps = 43/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEPIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G E+++ + + V GR + + Q IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGITAIVDYAHTPDALI 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ L + R+ A+R A + E+GD+++VA
Sbjct: 413 INDMLAGLDAEDMKKTLSIAD------------------RKEAIRTACMLAEKGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHE YQ K FDD+E +E +
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEVLKEIFK 482
>gi|256847057|ref|ZP_05552503.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Lactobacillus coleohominis 101-4-CHN]
gi|256715721|gb|EEU30696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Lactobacillus coleohominis 101-4-CHN]
Length = 488
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 210/380 (55%), Gaps = 25/380 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G TG++ ++ Y D + TTPD + Q +A+M + V ME SS L G
Sbjct: 128 LGEGTGLIGTL-YRKVNDQVYPTTNTTPDVLTNQKTLAEMRDANVKTVSMEVSSIALVQG 186
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK-VVNIDDPNATS 119
R +++DI VFTN T DH+ +H T +Y+ AK+ LF++M + + V+NIDDP
Sbjct: 187 RVWGINYDICVFTNFTEDHLAYHKTMSQYKLAKSLLFAQMGNTFSGKTAVMNIDDPVGRE 246
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
FI ++ +T+ ++++ AD++ ++++ T+ ++ + + + L+G N+YN
Sbjct: 247 FIDYTTSNI--LTYGIKHQ-ADIYADHIKITIHGTEFDLHVFDEVKHVKTHLIGEFNVYN 303
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
LAAV A GA + +IV + V V GR +L+ VIVDYAHTPD L +L++
Sbjct: 304 SLAAVGAAYAAGASVAEIVDSLSRVKGVKGRFQLVPSNTGVSVIVDYAHTPDGLLNVLET 363
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+ + A + +VGC G+ D KRP M KIA D S ILT DNP EDP I+DDMLAG
Sbjct: 364 LNDFAEQDTYCIVGCGGDRDAQKRPQMAKIAVDNSTHAILTEDNPRTEDPHKIMDDMLAG 423
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ ++D + N RR A++ AV + GD +++AGKGHE YQ
Sbjct: 424 I-----------DSDQATVIFN---------RREAIQYAVNRAKPGDAIIIAGKGHEDYQ 463
Query: 360 IEGDKKEFFDDREESREALQ 379
I G K FDD EE+ +AL+
Sbjct: 464 IIGKTKHHFDDYEEAEKALK 483
>gi|313206535|ref|YP_004045712.1| UDP-n-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|383485837|ref|YP_005394749.1| udp-n-acetylmuramoylalanyl-D-glutamate-gene,6-diaminopimelate
ligase [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|386321473|ref|YP_006017635.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer
RA-GD]
gi|416109730|ref|ZP_11591610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Riemerella anatipestifer RA-YM]
gi|442314264|ref|YP_007355567.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer
RA-CH-2]
gi|312445851|gb|ADQ82206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|315023524|gb|EFT36528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Riemerella anatipestifer RA-YM]
gi|325336016|gb|ADZ12290.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer
RA-GD]
gi|380460522|gb|AFD56206.1| udp-n-acetylmuramoylalanyl-D-glutamate-gene,6-diaminopimelate
ligase [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|441483187|gb|AGC39873.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer
RA-CH-2]
Length = 486
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 198/374 (52%), Gaps = 29/374 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + ++S+V Y I GD S TTPD V + L+AK + G E ME SSHG+
Sbjct: 129 LGYPSALISTVEYRI-GDEVFPSTHTTPDVVKLNELLAKAVAQGCEYAFMEVSSHGIHQN 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +A FTN+T DH+D+H T EY N K F + P+ + N+DD N
Sbjct: 188 RTEGLHFKVAGFTNITHDHLDYHKTFLEYLNTKKSFFDNL--PDSAVAITNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N T+A++ +D H E+ +L+N E+ + L G+ N+YN+
Sbjct: 244 VMLQNTKAKKKTYALKT-LSDYHGRLLEVDF--NGMLLNFNGK--EVWTSLTGKFNVYNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L + +G +I+ I ++ V GR E I E +VDYAHTPDAL +LDS+
Sbjct: 299 LLVFGIARELGFDEVEILTAISQLKRVNGRFETIKSEGGIFFVVDYAHTPDALENILDSI 358
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ + R+I+V GC G+ D KRP M KIAT KS + I+TSDNP EDP I+ ++ A
Sbjct: 359 NEIRTKNERLISVFGCGGDRDHSKRPEMGKIATQKSTLAIITSDNPRTEDPNTIIQEIEA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GV Q + K Y +P+ RR A++ A+ E D+++VAGKGHE Y
Sbjct: 419 GV--EPQCFSK------YTVVPD---------RREAIKMAIKFAEPKDIILVAGKGHEIY 461
Query: 359 QIEGDKKEFFDDRE 372
Q K FDD+E
Sbjct: 462 QEVNGVKHHFDDKE 475
>gi|29348861|ref|NP_812364.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides thetaiotaomicron VPI-5482]
gi|46577030|sp|Q8A254.1|MURE_BACTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|29340767|gb|AAO78558.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides thetaiotaomicron VPI-5482]
Length = 482
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 204/385 (52%), Gaps = 43/385 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DQPIPTEHTTPDPITLNRLLGQMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +V+ + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGRVIESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSPKGVTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P +I
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQEI 412
Query: 293 LDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ L + R+ A+R A + E+GD+++VA
Sbjct: 413 INDMLAGLDAEDMKKTLSIAD------------------RKEAIRTACMLAEKGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESRE 376
GKGHE YQ K FDD+E +E
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEVLKE 479
>gi|255348629|ref|ZP_05380636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis 70]
gi|255503169|ref|ZP_05381559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis 70s]
gi|255506847|ref|ZP_05382486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis D(s)2923]
gi|385241635|ref|YP_005809475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis E/11023]
gi|385245242|ref|YP_005814065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis E/150]
gi|386262620|ref|YP_005815899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis Sweden2]
gi|389857959|ref|YP_006360201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis F/SW4]
gi|389858835|ref|YP_006361076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis E/SW3]
gi|389859711|ref|YP_006361951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis F/SW5]
gi|289525308|emb|CBJ14784.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
[Chlamydia trachomatis Sweden2]
gi|296434858|gb|ADH17036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis E/150]
gi|296438578|gb|ADH20731.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis E/11023]
gi|380249031|emb|CCE14322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
[Chlamydia trachomatis F/SW5]
gi|380249906|emb|CCE13433.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
[Chlamydia trachomatis F/SW4]
gi|380250784|emb|CCE12544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
[Chlamydia trachomatis E/SW3]
gi|440526965|emb|CCP52449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis D/SotonD1]
gi|440529639|emb|CCP55123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis E/SotonE4]
gi|440530538|emb|CCP56022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis E/SotonE8]
gi|440531430|emb|CCP56940.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis F/SotonF3]
gi|440535005|emb|CCP60515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis E/Bour]
Length = 483
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 141/380 (37%), Positives = 214/380 (56%), Gaps = 31/380 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ + I G+N++ TTPDA+++Q A+M+ A VME SS G+ALGR
Sbjct: 128 GRRTGLIGTIEH-ILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVMEVSSIGMALGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
E +F V TN+T DH+DFHG+ EEY AK + F+ + PE+ VVN+D A SF+
Sbjct: 187 VRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASL--PEKGIAVVNLDCEYAPSFL 244
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
V++A+ +++AD + +L + + + + L+G HN+YN+L
Sbjct: 245 --NGSQARAVSYAI-HQEADYRADRLKLYSSGSSYDIWYQGKVFLCETSLIGEHNVYNVL 301
Query: 182 AAVA-VGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
A++A V +G D+VR + + A GR + I F V +DYAHTPDAL + +
Sbjct: 302 ASLAVVHQFLGGDFADLVRDVRFLSAPKGRLDPI-LLGPFPVYIDYAHTPDALDNVCRIL 360
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+L P+ R+I V GC G+ DR KRPLM K+ ++ + +TSDNP EDP I+ D+
Sbjct: 361 LQLLPKDGRLIIVFGCGGDRDRVKRPLMAKV-SEHYGFSFVTSDNPRTEDPDQIIADICK 419
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G++ Y+ E+D R++A+ A++M + D+V+VAGKGHE Y
Sbjct: 420 --GFSTDHYVV--ESD----------------RKLAIEKAISMASDKDIVLVAGKGHEGY 459
Query: 359 QIEGDKKEFFDDREESREAL 378
QI + FDDRE EAL
Sbjct: 460 QIFKHQTIVFDDREVVCEAL 479
>gi|423081345|ref|ZP_17069953.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Clostridium difficile
002-P50-2011]
gi|423084596|ref|ZP_17073096.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Clostridium difficile
050-P50-2011]
gi|357551011|gb|EHJ32815.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Clostridium difficile
002-P50-2011]
gi|357552166|gb|EHJ33941.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Clostridium difficile
050-P50-2011]
Length = 484
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 197/389 (50%), Gaps = 49/389 (12%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ + G+ + S TTP+++ +Q ML NG + ME SSH LAL R
Sbjct: 130 KVGLIGTIKIF-DGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEVSSHSLALNRVD 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E DF + +FTNLT DH+DFH ++YR AK KLF + ++NIDD
Sbjct: 189 ETDFKLGIFTNLTPDHLDFHKDLDDYRKAKEKLFFKTT----MANIINIDDEGGKKIYEN 244
Query: 124 -GNPDVPVVTFAMENK--------KADVHPLKFELSL--FETQVLVNTPHGILEISSGLL 172
+VP T+ ++ K K+D + + L +E + + P
Sbjct: 245 IKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP----------- 293
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
G +YN LA +A +G P G+ + V GR E + ++ VIVDYAHTPDA
Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVPNDKGISVIVDYAHTPDA 353
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L +L + ++ A +II+V GC G+ D KRPLM I SD+ I+TSDNP E+P I
Sbjct: 354 LENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGSIGQKYSDLCIITSDNPRTEEPELI 413
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVV 350
+ D+L G+ + Y H + R+ A+ A++M ++ D+V++
Sbjct: 414 IKDILEGIDKKKENY--------------------HVVVDRKQAIAEAISMAKKDDVVII 453
Query: 351 AGKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHETYQI G K FDD+E + E L
Sbjct: 454 TGKGHETYQIIGKVKHHFDDKEVANECLS 482
>gi|33593958|ref|NP_881602.1| bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Bordetella pertussis Tohama I]
gi|384205262|ref|YP_005591001.1| D-alanine--D-alanine ligase [Bordetella pertussis CS]
gi|33564032|emb|CAE43298.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella pertussis Tohama I]
gi|332383376|gb|AEE68223.1| D-alanyl-D-alanine ligase [Bordetella pertussis CS]
Length = 945
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 201/390 (51%), Gaps = 35/390 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG G + ++ + L TTPD + + +A+M G AV +EASS G+ G
Sbjct: 136 MGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQG 195
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + +A FTNLTRDH+D+HGT + Y AKA LF P+ VVN DDP
Sbjct: 196 RLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQW---PDLQAAVVNADDPAGERL 252
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+A P ++++ ADVH + + + P G ++I + LLG+HNI N+
Sbjct: 253 LAS-LPAALKTGYSLQGAPADVHARDLQATAHGQVFTLTLPDGEVQIVTRLLGQHNISNL 311
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE---------LIDEEQAFGVIVDYAHTPD 231
L +G PL I R + + V GR + L Q V+VDYAHTPD
Sbjct: 312 LLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPD 371
Query: 232 ALSRLLDSVRELAPR---RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
AL+R L ++R +A R++ V GC GE D GKRP M +IA +++D ++TSDNP +E
Sbjct: 372 ALARALTALRPVAQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSES 431
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P DI+D +LAG+ P G R + R +A+ + D++
Sbjct: 432 PQDIIDQILAGI-------------------PAGMRAAVQPDRALAIMQTLWSAAPDDVI 472
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREAL 378
++AGKGHETYQ G +K FDDR+ +R AL
Sbjct: 473 LLAGKGHETYQDIGGRKLPFDDRQWARLAL 502
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 6/183 (3%)
Query: 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDV 128
+A+ TN R+H +F T E + + + PE V D+P A +
Sbjct: 665 VALVTNAQREHQEFMHTVEAVAHENGAVIGAL--PEDGVAVYPGDEPYAAIWDKLAGARR 722
Query: 129 PVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGI 188
V+ F ++ DV+ + TQ V TP G + + G HN+ N LAA+A G+
Sbjct: 723 -VLRFGLQ-PGLDVYAERVVTQAHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGL 780
Query: 189 AVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVREL-APR 246
A GAPL + + AV GR + +I D Y PD+ +D + L APR
Sbjct: 781 AAGAPLHTCIAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPR 840
Query: 247 RII 249
++
Sbjct: 841 ALV 843
>gi|299768539|ref|YP_003730565.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter oleivorans DR1]
gi|298698627|gb|ADI89192.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter oleivorans DR1]
Length = 499
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 135/361 (37%), Positives = 197/361 (54%), Gaps = 29/361 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QN + G +EASSHGL GR + +IAV++NL+RDH+D+
Sbjct: 149 STHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCAIEIAVYSNLSRDHLDY 208
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMENKK 139
HGT E Y AKA LF V+N+DD +A I A+ NP P ++T+++
Sbjct: 209 HGTLEAYAEAKALLFRF---NSLKVAVINLDDEHAALMINAAKQNPAQPKILTYSLTQNT 265
Query: 140 ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199
AD + SL + + G + S LLG N+ N++AA+ G L+ +V
Sbjct: 266 ADYYISDLSYSLAGATFNLVSSQGSFAVQSPLLGHFNVENLIAALIAAEQAGFDLDALVA 325
Query: 200 GIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258
+ ++ PGR ++I D E+ F +VDYAHTPDAL ++L +++ ++ V GC G+
Sbjct: 326 FVPKLIGAPGRMQVIRDGERLF--VVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDR 383
Query: 259 DRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPP 318
DRGKRPLMT+ A D ++ ILTSDNP EDP I DM G+ ++
Sbjct: 384 DRGKRPLMTQAALDGANPIILTSDNPRTEDPEQIFADMKQGINFS--------------- 428
Query: 319 LPNGHRLF-LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
GHR+ +HD RR A++ + GD+VV+AGKGHE YQ + +FDD E + A
Sbjct: 429 ---GHRMQEIHD-RREAIKFVAQQAQAGDIVVIAGKGHENYQEINGVRHWFDDVVEVQSA 484
Query: 378 L 378
+
Sbjct: 485 I 485
>gi|237756371|ref|ZP_04584918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691468|gb|EEP60529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Sulfurihydrogenibium yellowstonense SS-5]
Length = 497
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 206/385 (53%), Gaps = 33/385 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++Y + GD L S TTPD V + M G + VV E SSH R
Sbjct: 132 GYKVGVIGTINYRV-GDEILSSGHTTPDPVEWFKTLKVMKDKGADVVVAEVSSHAADQYR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKV--VNIDDPNATS 119
F +FTNLT+DH+D+H T E Y AK ++F + +D + +N+DD +
Sbjct: 191 VYSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRVFEQ-IDKFNKEAIYSINVDDEHGRR 249
Query: 120 FI------AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLG 173
+ + N D ++T+ ++ D L + LSLFET+ + +I + L G
Sbjct: 250 ILDYLKNHLKVNDD-KIITYGKTSE--DFKILDYRLSLFETEFSYKYKDTLSKIKTKLRG 306
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
NIYN+ A V+ I G L+ + + + GR E+I E Q F V++DYAHTPDAL
Sbjct: 307 VFNIYNLSATVSFLIKDGFDLKFLEEKALHLKPIKGRFEVI-EGQGFIVVIDYAHTPDAL 365
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L S+ E+ RIITV G G D+ KRPLM + A SDV ILTSDNP NEDPL I+
Sbjct: 366 ENILKSLNEIKENRIITVFGAGGNRDKTKRPLMGETAESLSDVVILTSDNPRNEDPLSII 425
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
+D+L G+ + D + + R+ A+ A+++ +E D++++AGK
Sbjct: 426 EDILDGIK----------DKDKVITIVD---------RKQAIEKAISLAKEKDIILIAGK 466
Query: 354 GHETYQIEGDKKEFFDDREESREAL 378
GHE YQI GDK FDD E +E +
Sbjct: 467 GHENYQIIGDKILHFDDAEVVKEII 491
>gi|327399670|ref|YP_004340539.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelateligase [Hippea maritima DSM 10411]
gi|327182299|gb|AEA34480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelateligase [Hippea maritima DSM 10411]
Length = 459
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 191/358 (53%), Gaps = 31/358 (8%)
Query: 18 DNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTR 77
D + + TTP+++ + ++ +M +E E SSH L+ R VDF + VFTN+++
Sbjct: 127 DERFKLNNTTPESLDLHRILNRMAMANSEYCFTEVSSHALSFNRIEGVDFALKVFTNISQ 186
Query: 78 DHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMEN 137
DH+DF+ E Y K F R+ KVVN DD I D +++ +
Sbjct: 187 DHLDFYDNLENYAKTKLSFFERL-----KPKVVNADDSYGRMLI-----DAATISYGFSD 236
Query: 138 KKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDI 197
A + P+ +E SL + +N + I+S L+G +N+YNI+AA+ V + G I
Sbjct: 237 F-AFIKPIVYEYSLDGIKAKLNVARRTISITSPLIGDYNLYNIMAALGVALFFGVDFARI 295
Query: 198 VRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGE 257
GI + PGR E ++ A+ V VDYAHT DA+ +L+++ ++ RIITV G G+
Sbjct: 296 EEGIAKSKGAPGRLEFFQKDGAYAV-VDYAHTDDAMRNVLEALNKIKKGRIITVFGAGGD 354
Query: 258 SDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYP 317
DR KRP M IA SDV ++TSDNP +E+PL I+DD+L G+
Sbjct: 355 RDRTKRPKMGSIAESLSDVVVVTSDNPRSEEPLAIIDDILEGIS---------------- 398
Query: 318 PLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESR 375
+ R+ + R A++ A+ M E+GD+V + GKGHE YQI DK FDDRE R
Sbjct: 399 ---DRDRVIVEPDRFEAIKKALGMAEKGDLVTILGKGHEDYQILKDKTIHFDDREVVR 453
>gi|315606649|ref|ZP_07881660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
33574]
gi|315251659|gb|EFU31637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
33574]
Length = 483
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 197/380 (51%), Gaps = 33/380 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI D + + TTPD + + L+ +M+ G E V ME SSH +A
Sbjct: 129 MGHKVGLLSTVCNYIE-DEAIPADHTTPDPIELNELLDRMVKAGCEYVFMECSSHAIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YRNAK F + + + N DD N
Sbjct: 188 RIGGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGL--SKDAFAITNADDKNGMVM 245
Query: 121 IAQGNPDVPVV-TFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + T M + +A + FE E H E+ +G+ N+ N
Sbjct: 246 VQNCKATIKTYSTRTMADFRARIIECHFEGMYLEVD-----GH---EVGVQFIGKFNVSN 297
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA I +G ED++ + + +V GR E I + I+DYAHTPDAL +L +
Sbjct: 298 LLAVYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIRSAEGVTAIIDYAHTPDALENVLSA 357
Query: 240 VREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ E+ R+ITV G G D+GKRPLM A +SD I+TSDNP E+P DI++DML
Sbjct: 358 IHEVLNGKGRVITVCGAGGNRDKGKRPLMAVEAVKQSDKVIITSDNPRFEEPQDIINDML 417
Query: 298 AGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG+ M++ + + R+ A+R A M ++GD+V++AGKGHE
Sbjct: 418 AGLNAQQMKKVVSIVD------------------RKEAIRTACMMAQKGDVVLIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDREESRE 376
YQ K FDD+E RE
Sbjct: 460 DYQEIKGVKHHFDDKEVVRE 479
>gi|319900362|ref|YP_004160090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides helcogenes P 36-108]
gi|319415393|gb|ADV42504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides helcogenes P 36-108]
Length = 483
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 206/387 (53%), Gaps = 43/387 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M +G + ME SSH +A
Sbjct: 131 FGYKVGLISTVCNYID-DQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQK 189
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 190 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKSAFSLTNLDDKNG--L 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 246 VMTQNTRSRVYTYSLRS-----------LSDFKGKVLESHFEGMLLDFNNHELAVRFIGK 294
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I + F IVDYAHTPDAL
Sbjct: 295 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPKGFTAIVDYAHTPDALV 354
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K + SD I+TSDNP E+P DI
Sbjct: 355 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDI 414
Query: 293 LDDMLAGVGW-TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+G +Q+ + + RR A++ A + + GD+++VA
Sbjct: 415 INDMLAGLGKDDLQKTVSITD------------------RREAIKAACMLAQPGDVILVA 456
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQ K FDD+EE + +
Sbjct: 457 GKGHEDYQEIKGVKHHFDDKEELKAMM 483
>gi|298387944|ref|ZP_06997493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 1_1_14]
gi|383125038|ref|ZP_09945697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 1_1_6]
gi|251840811|gb|EES68892.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 1_1_6]
gi|298259351|gb|EFI02226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 1_1_14]
Length = 482
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 204/385 (52%), Gaps = 43/385 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DQPIPTEHTTPDPITLNRLLGQMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +V+ + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGRVIESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSPKGVTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P +I
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQEI 412
Query: 293 LDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ L + R+ A+R A + E+GD+++VA
Sbjct: 413 INDMLAGLDAEDMRKTLSIAD------------------RKEAIRTACMLAEKGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESRE 376
GKGHE YQ K FDD+E +E
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEVLKE 479
>gi|390559183|ref|ZP_10243542.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrolancetus
hollandicus Lb]
gi|390174258|emb|CCF82834.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrolancetus
hollandicus Lb]
Length = 515
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 142/386 (36%), Positives = 205/386 (53%), Gaps = 22/386 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLE--SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
G RTGML +V+ + G+ +E + +TTP+++ VQ L+A M + V+EA+SHGLAL
Sbjct: 133 GFRTGMLGTVAIRV-GERVIEHDNRQTTPESLEVQRLLADMREAAVDWAVLEATSHGLAL 191
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV----DPERHRKVVNIDDP 115
R FDI V TN+T++H++FHGT EEYR AKA+L R+ P V+N DD
Sbjct: 192 PRLDCCPFDIGVVTNITQEHLEFHGTVEEYRWAKARLLERVSAGSGRPGPRGAVLNADDE 251
Query: 116 NATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
A S P P+V F+ +A++ E T+ + TP G + L+G+
Sbjct: 252 GARSIAPAAGP-APIVWFSSRGARAEIRATGIETGSDGTRFRLETPTGSAGVRLALIGQF 310
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+ N LAA VG +G +I GI +++VPGR + Q F VIVDYAHTP++L +
Sbjct: 311 NVDNALAAAGVGHLIGLSAGEIAEGIGSLESVPGRLRRVALGQPFEVIVDYAHTPESLEK 370
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L VR L R+I V G AGE DR KRPL + +D++I TS++P EDP +
Sbjct: 371 TLRLVRGLVRGRVIAVFGSAGERDRVKRPLQGAVGARLADISIFTSEDPRCEDP----EA 426
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
++A + + DY+ + D R G GD VV+AGKGH
Sbjct: 427 IIAEISAGAEAAGAVEGRDYF---------RIEDRRAAIRAAIERAG-PGDAVVLAGKGH 476
Query: 356 ETYQIEGDKKEFFDDREESREALQYV 381
E I G ++ +D+ E+ ALQ +
Sbjct: 477 EQCIIYGVERRPWDEAGEAMAALQGI 502
>gi|374301719|ref|YP_005053358.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfovibrio africanus str. Walvis Bay]
gi|332554655|gb|EGJ51699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfovibrio africanus str. Walvis Bay]
Length = 485
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 201/381 (52%), Gaps = 26/381 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+L +VSY G + +++P TTPD + + ++A+M G + VME SSH L R
Sbjct: 126 GRKVGVLGTVSYRWPGFS-MDAPLTTPDCLSLHEMLARMDKAGVDLAVMEVSSHALDQQR 184
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ + +D AV TNLT+DH+D+H E Y AKA+LF R + E VVN +DP +
Sbjct: 185 VAGLAYDAAVLTNLTQDHLDYHKDMETYFQAKARLF-RELPKEGKAWVVNYEDPYGLRLL 243
Query: 122 AQG-NPDVPVVTFAMENKKADVHPLKFE---LSLFETQVLVNTPHGILEISSGLLGRHNI 177
+G + V+ + +E + ++ E +S ++ V E+ S L+GRHN
Sbjct: 244 REGLSAGRSVLGYGLETPPVGMPAIRAEIRAMSAAGLELAVEFEGRRFELVSPLVGRHNA 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+L A+ VG +G D+ + + V GR E + V VDYAHTPDAL +L
Sbjct: 304 MNLLTAMGVGFKLGLRESDM-QALAGFTGVSGRLERVTNPHGLNVFVDYAHTPDALVNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+V+ L RR++ V GC G DR KRPLM + +DV +LTSDNP +EDPL I++D+
Sbjct: 363 SAVKALGVRRLVCVFGCGGNRDRAKRPLMGQAVCRHADVAVLTSDNPRHEDPLAIIEDV- 421
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
P L R+ + RR A+ A+ D +VVAGKGHE
Sbjct: 422 ------------------KPGLSGCARVVIEPDRRKAIALALEGLTAEDALVVAGKGHEP 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ GD K F D++ RE L
Sbjct: 464 YQQIGDVKHPFSDQQVVRELL 484
>gi|317132989|ref|YP_004092303.1| UDP-N-acetylmuramyl tripeptide synthetase [Ethanoligenens
harbinense YUAN-3]
gi|315470968|gb|ADU27572.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens
harbinense YUAN-3]
Length = 484
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 141/380 (37%), Positives = 206/380 (54%), Gaps = 31/380 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G ++G++ ++ + G L S TTP+ Q L+ + G E VME SSH LA R
Sbjct: 126 GHKSGLIGTI-VNMAGGKTLPSHLTTPEPYEFQQLLKTIADEGCEFAVMEVSSHALAQER 184
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ F+ AVFTNLT+DH+DFH T E Y AK KLFS M D +VN+DD A I
Sbjct: 185 VAGCHFEAAVFTNLTQDHLDFHKTMENYLEAKEKLFS-MCD----LGIVNVDDDYAPEII 239
Query: 122 AQGNPDVPVVTFAMENKKAD--VHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
VT++ AD +K + E +++ N G +S + G ++YN
Sbjct: 240 RTAK--CKTVTYSARYMNADYTARNIKLKNDGVEYEMVGNALIG--RVSVPIPGAFSVYN 295
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
LAA A +++G P + ++ + +V V GR E++ + F VI+DYAHTPDAL ++L S
Sbjct: 296 TLAAAAAAVSLGIPFKQVLEALHQVKGVKGRIEVVPTGRNFTVIIDYAHTPDALEKILKS 355
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D+ KRP+M +A +D I+TSDNP EDP I+DD+L G
Sbjct: 356 IRGFAKGRVVALFGCGGDRDKTKRPIMGMVAGRGADFCIVTSDNPRTEDPQAIIDDILPG 415
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ Y +PN RR A+ A+ ++ D+V++AGKGHE YQ
Sbjct: 416 MDGPAP----------YVVVPN---------RREAIAYALKNAQKDDIVLLAGKGHEDYQ 456
Query: 360 IEGDKKEFFDDREESREALQ 379
I G +K FD+RE E L+
Sbjct: 457 IIGREKHHFDEREVVAEILR 476
>gi|424665906|ref|ZP_18102942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis HMW 616]
gi|404574159|gb|EKA78910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis HMW 616]
Length = 485
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 136/384 (35%), Positives = 204/384 (53%), Gaps = 41/384 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGRMADEGCKYAFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEL--PKSSFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +GR
Sbjct: 244 VMTQNTKSKVYTYSLRS-----------LSDFKGKVLESHFEGMLLDFNNHELAVQFIGR 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G E+++ + + V GR + I Q + IVDYAHT DAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAIRSPQGYTAIVDYAHTSDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG+ +N+ L + D R+ A+R A + E+GD+++VAG
Sbjct: 413 INDMLAGL-----------DNE-----DKKKTLSIAD-RKEAIRTACMLAEKGDVILVAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESRE 376
KGHE YQ K FDD+E +E
Sbjct: 456 KGHENYQEIKGVKHHFDDKEVLKE 479
>gi|423223528|ref|ZP_17209997.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides cellulosilyticus CL02T12C19]
gi|392638408|gb|EIY32249.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides cellulosilyticus CL02T12C19]
Length = 483
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 134/382 (35%), Positives = 202/382 (52%), Gaps = 43/382 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M +G + V ME SSH +
Sbjct: 129 FGYKVGLISTVCNYID-DQPIPTEHTTPDPITLNQLLGQMADSGCKYVFMEVSSHSIDQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ ++L + G+L E++ +GR
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGKILESHFEGMLLDFNNHELAVHFIGR 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + + + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLQPVAGRFDAVRSPKGITAIVDYAHTPDALI 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWT-MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ MQ+ + + RR A++ A + + GD+++VA
Sbjct: 413 INDMLAGLDKEDMQKTINIAD------------------RREAIKTACLLAQPGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREE 373
GKGHE YQ K FDD+EE
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEE 476
>gi|392412981|ref|YP_006449588.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomonile tiedjei
DSM 6799]
gi|390626117|gb|AFM27324.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomonile tiedjei
DSM 6799]
Length = 518
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 141/377 (37%), Positives = 209/377 (55%), Gaps = 10/377 (2%)
Query: 6 GMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEV 65
G++ ++S+ G + + TTP+A +Q L M+ + +E SSHGL GR
Sbjct: 133 GVVGTISHR-WGTAEQAAAHTTPEASDLQMLFRDMVRDSVTHAFVEVSSHGLHRGRLEGC 191
Query: 66 DFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV---DPERHRKVVNIDDPNATSFIA 122
+FD+ VFTNLT+DH+D+HG+ EEY AK LF R++ + +N +DP I
Sbjct: 192 EFDLGVFTNLTQDHLDYHGSLEEYYLAKRILFDRLLPSSSKSKKAAAINWEDPYGLRLIR 251
Query: 123 QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILA 182
+ P++ + + + ++V PL + + + TP G + + S L G N+ NILA
Sbjct: 252 E-TQGYPIIGYGI-GEDSEVRPLNITVDPDGIRGTIVTPRGNVRVESALAGSFNLMNILA 309
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRE 242
AVAV + P+ + +G+ V AVPGR E ++ EQ + VDYAHTP+AL +LD++R
Sbjct: 310 AVAVCECLEIPIAAVQQGLAAVRAVPGRLERVESEQGI-IFVDYAHTPNALKNVLDALRI 368
Query: 243 LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGW 302
+ RI+TV+GC G+ D KRPLM A SD I+TSDNP +EDPLDI+ + GV
Sbjct: 369 MKRSRIVTVMGCGGDRDTAKRPLMGAEAAAGSDFVIVTSDNPRSEDPLDIIRQVEVGVRD 428
Query: 303 TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEG 362
+ + L N L G + D R A+ A+ D+++VAGKGHETYQ
Sbjct: 429 SGYKLLPADLNG--KTLHPGCYKVIPD-RGNAIAWAIDRLSRDDILLVAGKGHETYQEIK 485
Query: 363 DKKEFFDDREESREALQ 379
+ FDDRE R+ L+
Sbjct: 486 GVRYPFDDREVIRKELR 502
>gi|420141558|ref|ZP_14649233.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa CIG1]
gi|403245700|gb|EJY59481.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa CIG1]
Length = 487
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 204/379 (53%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ +G LES R TTPD + VQ +A + G AV ME SSHGL
Sbjct: 126 LGERCGIVGTLGTGFYG--ALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FDIAVFTNL+RDH+D+HG+ E Y AKAKLF+ P +V+N+DD
Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAW---PGLRCRVINLDDDFGRR 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ D ++T+++ + A ++ + + + TPHG + S LLGR N+ N
Sbjct: 241 LAGE-EQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + +G PL DI+R + ++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 300 LLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDALEKVLEA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM +A +D ++T DNP E I+ D+ G
Sbjct: 360 LRPHAAARLLCLFGCGGDRDAGKRPLMAALAERLADGVLVTDDNPRTEASAAIIADIRKG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ D LP+ H I AV D+V++AGKGHE YQ
Sbjct: 420 ----------FAAADKVTFLPSRGEAIAHLIASAAVD---------DVVLLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREAL 378
+ F D E++ AL
Sbjct: 461 EIDGVRHPFSDIEQAERAL 479
>gi|445114756|ref|ZP_21378034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prevotella nigrescens
F0103]
gi|444840628|gb|ELX67656.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prevotella nigrescens
F0103]
Length = 489
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 195/380 (51%), Gaps = 32/380 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D + + TTPD + + L+A+M+ G E ME SSH +
Sbjct: 130 FGYKVGLLSTVCNYID-DKAIPADHTTPDPIELNELLARMVAEGCEYAFMECSSHAIHQR 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YRNAK K+F +D + + N DD N
Sbjct: 189 RIGGLKFTGGIFTNLTRDHLDYHKTFENYRNAK-KMFFDDLDKDAF-AITNADDKNGMIM 246
Query: 121 IAQGNPDVPVVTFA-MENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + + M + +A + FE E E+ +G+ N+ N
Sbjct: 247 VQNCKAQIKTYSIKRMADFRAHILECHFEGMYLEIDG--------KEVGVQFIGKFNVSN 298
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA I +G EDI+ + + +V GR E I + IVDYAHTPDAL L +
Sbjct: 299 LLAVYGTAIMLGKKAEDILVALSTLKSVNGRLEPISSPDGYTAIVDYAHTPDALENTLLA 358
Query: 240 VRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ E+ + +ITV G G D+GKRPLM A SD ILTSDNP NE P I+DDM
Sbjct: 359 IHEVLEGKGGHVITVCGAGGNRDKGKRPLMALEAVKHSDKVILTSDNPRNEAPQSIIDDM 418
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
LAG+ ++ + + + D R+ A+R A M ++GD++++AGKGHE
Sbjct: 419 LAGLDSAQKKKV----------------ISIVD-RKEAIRTACMMAQKGDVILIAGKGHE 461
Query: 357 TYQIEGDKKEFFDDREESRE 376
TYQ K FDD E RE
Sbjct: 462 TYQEINGVKHHFDDHEVVRE 481
>gi|403053533|ref|ZP_10908017.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter bereziniae LMG 1003]
Length = 501
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 196/361 (54%), Gaps = 30/361 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QNLM G E +EASSHGL GR + D +IA ++NL+RDH+D+
Sbjct: 152 SSHTTLDALHLQNLMHDFALQGAEFASIEASSHGLEQGRLNGCDIEIAAYSNLSRDHLDY 211
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVPVVTFAMENKKA 140
HGT E Y AK+ LF V+NIDD +A + A N P V +K A
Sbjct: 212 HGTLEAYAEAKSLLFKW---SSLKVAVINIDDAHADLMMNAASSNLSHPKVLTYSTSKAA 268
Query: 141 DVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200
D + SL + T G + S LLG NI N++A++ V G L+ ++
Sbjct: 269 DYQVFGIKYSLDGAVFHLKTAKGEFTVHSPLLGHFNIENLVASLIVAEQAGFDLQQLIAQ 328
Query: 201 IEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259
+ ++ PGR ++I D+++ F +VDYAHTPDAL+++L +++ ++ V GC G+ D
Sbjct: 329 VPKLKGAPGRMQVIRDQDRLF--VVDYAHTPDALTQVLKTLKRHVENQLWAVFGCGGDRD 386
Query: 260 RGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPL 319
RGKRPLMTK A +++ ++TSDNP E+P I DM + ++ E
Sbjct: 387 RGKRPLMTKAALEQATPVVMTSDNPRTENPEQIFADMKQDIDFSQHE------------- 433
Query: 320 PNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
+H+I RR A++ AV + GD+VV+AGKGHE YQ + +FDD E + A
Sbjct: 434 -------VHEIRDRREAIKYAVKHAQAGDIVVIAGKGHENYQEIDGVRHWFDDVVEVQSA 486
Query: 378 L 378
+
Sbjct: 487 I 487
>gi|256752930|ref|ZP_05493761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
ethanolicus CCSD1]
gi|256748185|gb|EEU61258.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
ethanolicus CCSD1]
Length = 483
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 135/375 (36%), Positives = 208/375 (55%), Gaps = 27/375 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I GD + S TTP+++ +Q L + M++ G + VVME SSH LAL R
Sbjct: 130 KVGLVGTIQNMI-GDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALNRVD 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E +FDIA+FTNL++DH+DFH EEY K+KLF + V+NIDD ++ I
Sbjct: 189 ECEFDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFKMA----KRASVINIDDKYSSMMIES 244
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
V+T+ +++ A V SL + V E+S + G N+YN LAA
Sbjct: 245 SKA--KVLTYGVKD-FAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLFNVYNALAA 301
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+ V +G L + + +V V GR E ++ + F V +DYAHTPD + ++++++E
Sbjct: 302 ITVADFLGISLRSVREALSQV-TVKGRFEPVETGKDFYVFIDYAHTPDGIQNIMEALKEY 360
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
R I + G G+ D+ KRPLM ++A +D ILTSDNP +EDP +I+ + G+ T
Sbjct: 361 KTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEDPREIISQIEEGIKKT 420
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
N Y + N R+ A+R A+ ++ D++++AGKGHETYQI G+
Sbjct: 421 ---------NCPYVVIEN---------RKEAIRYALTNAQKDDVIILAGKGHETYQIIGN 462
Query: 364 KKEFFDDREESREAL 378
K FD+RE +E L
Sbjct: 463 KVIPFDEREIVKEIL 477
>gi|15604990|ref|NP_219774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis D/UW-3/CX]
gi|76788991|ref|YP_328077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis A/HAR-13]
gi|237804614|ref|YP_002888768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis B/TZ1A828/OT]
gi|255311070|ref|ZP_05353640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis 6276]
gi|255317371|ref|ZP_05358617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis 6276s]
gi|376282273|ref|YP_005156099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis A2497]
gi|385239780|ref|YP_005807622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis G/9768]
gi|385240702|ref|YP_005808543.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis G/11222]
gi|385242556|ref|YP_005810395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis G/9301]
gi|385243476|ref|YP_005811322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis D-EC]
gi|385244356|ref|YP_005812200.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis D-LC]
gi|385246166|ref|YP_005814988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis G/11074]
gi|385269944|ref|YP_005813104.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis A2497]
gi|8134575|sp|O84271.1|MURE_CHLTR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|123607010|sp|Q3KM93.1|MURE_CHLTA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|3328681|gb|AAC67862.1| UDP-N-acetylmuramoylalanylglutamyl DAP Ligase [Chlamydia
trachomatis D/UW-3/CX]
gi|76167521|gb|AAX50529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis A/HAR-13]
gi|231272914|emb|CAX09825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
[Chlamydia trachomatis B/TZ1A828/OT]
gi|296435785|gb|ADH17959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis G/9768]
gi|296436710|gb|ADH18880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis G/11222]
gi|296437645|gb|ADH19806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis G/11074]
gi|297140144|gb|ADH96902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis G/9301]
gi|297748399|gb|ADI50945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis D-EC]
gi|297749279|gb|ADI51957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis D-LC]
gi|347975084|gb|AEP35105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis A2497]
gi|371908303|emb|CAX08931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
[Chlamydia trachomatis A2497]
gi|438690192|emb|CCP49449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis A/7249]
gi|438691276|emb|CCP48550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis A/5291]
gi|438692649|emb|CCP47651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis A/363]
gi|440525182|emb|CCP50433.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis K/SotonK1]
gi|440527858|emb|CCP53342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis D/SotonD5]
gi|440528749|emb|CCP54233.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis D/SotonD6]
gi|440532322|emb|CCP57832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis G/SotonG1]
gi|440533216|emb|CCP58726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis Ia/SotonIa1]
gi|440534110|emb|CCP59620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Chlamydia trachomatis Ia/SotonIa3]
Length = 483
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 141/380 (37%), Positives = 214/380 (56%), Gaps = 31/380 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ + I G+N++ TTPDA+++Q A+M+ A VME SS G+ALGR
Sbjct: 128 GRRTGLIGTIEH-ILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVMEVSSIGMALGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
E +F V TN+T DH+DFHG+ EEY AK + F+ + PE+ VVN+D A SF+
Sbjct: 187 VRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASL--PEKGIAVVNLDCEYAPSFL 244
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
V++A+ +++AD + +L + + + + L+G HN+YN+L
Sbjct: 245 --NGSQARAVSYAI-HQEADYRADRLKLYSSGSSYDIWYQGQVFPCETSLIGEHNVYNVL 301
Query: 182 AAVA-VGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
A++A V +G D+VR + + A GR + I F V +DYAHTPDAL + +
Sbjct: 302 ASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPI-LLGPFPVYIDYAHTPDALDNVCRIL 360
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+L P+ R+I V GC G+ DR KRPLM K+ ++ + +TSDNP EDP I+ D+
Sbjct: 361 LQLLPKDGRLIIVFGCGGDRDRVKRPLMAKV-SEHYGFSFVTSDNPRTEDPDQIIADICK 419
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G++ Y+ E+D R++A+ A++M + D+V+VAGKGHE Y
Sbjct: 420 --GFSTDHYVV--ESD----------------RKLAIEKAISMASDKDIVLVAGKGHEGY 459
Query: 359 QIEGDKKEFFDDREESREAL 378
QI + FDDRE EAL
Sbjct: 460 QIFKHQTIVFDDREVVCEAL 479
>gi|389704116|ref|ZP_10185830.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter sp. HA]
gi|388611199|gb|EIM40305.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Acinetobacter sp. HA]
Length = 448
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 132/362 (36%), Positives = 206/362 (56%), Gaps = 32/362 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QN + G E +EASSHGL GR + D +IA ++NL+RDH+D+
Sbjct: 99 SSHTTLDALQLQNALHGYAQAGAEFASIEASSHGLEQGRLNGCDIEIAAYSNLSRDHLDY 158
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVP-VVTFAMENKK 139
HGT E Y AK++LF ++N+DD +A I AQ N P ++T+++ ++
Sbjct: 159 HGTLEAYAEAKSRLFKF---ESLKVAIINLDDAHAQVMIEAAQANLAQPKILTYSL-SQV 214
Query: 140 AD--VHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDI 197
AD V +++ +S E +++ T G + S LLG N+ N++A++ V G L ++
Sbjct: 215 ADYQVQDIQYRISGAEFKLI--TAQGTFTVHSPLLGHFNVENLVASLVVAEQAGFDLANL 272
Query: 198 VRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAG 256
+ + + PGR +++ D E+ F +VDYAHTPDAL+++L +++ ++ V GC G
Sbjct: 273 IETVPNLKGAPGRMQVLRDGERLF--VVDYAHTPDALTQVLVTLKRHVNNKLWAVFGCGG 330
Query: 257 ESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYY 316
+ DRGKRPLM + A + SD+ ILTSDNP E+P I DM G+ + + Y +
Sbjct: 331 DRDRGKRPLMAQAALNGSDIAILTSDNPRTENPEQIFADMKQGIDFAGKTYQE------- 383
Query: 317 PPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESRE 376
+HD RR A++ V + GD+VV+AGKGHE YQ + +FDD E +
Sbjct: 384 ----------IHD-RREAIKFVVKHAQAGDIVVIAGKGHENYQEIDGVRHWFDDVVEVQA 432
Query: 377 AL 378
A+
Sbjct: 433 AI 434
>gi|331006872|ref|ZP_08330125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[gamma proteobacterium IMCC1989]
gi|330419323|gb|EGG93736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[gamma proteobacterium IMCC1989]
Length = 556
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 129/363 (35%), Positives = 201/363 (55%), Gaps = 35/363 (9%)
Query: 26 TTPDAVMVQNLMAKMLHN-------GTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
TTPDA+ Q + ++LH+ G E+VVME SSHGL GR S +D + A+FTNLT D
Sbjct: 209 TTPDAIAAQFICDELLHSNNASNTLGLESVVMEVSSHGLEQGRVSALDINSAIFTNLTHD 268
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENK 138
H+D+HG Y NAKAKLF P + +VN+DD + + V V++++++N
Sbjct: 269 HLDYHGDMVAYGNAKAKLFEM---PTINLAIVNLDDEFSHELTTKIASTVRVISYSIDNA 325
Query: 139 KADVH--PLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLED 196
AD++ +++ S + N I +S+ L+GR N+ N+LA ++V +
Sbjct: 326 NADLYLDNIRYGHSQLLADLYCNNE--IYALSTPLIGRFNLSNLLAVLSV-FSQQQNFSQ 382
Query: 197 IVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAG 256
+V + + + GR E ++ ++ V+VD+AHTPDAL +L +V E + V GC G
Sbjct: 383 VVASAQYLQPISGRMESVENQEGIQVVVDFAHTPDALDNVLQAVSEYVDGEVYCVFGCGG 442
Query: 257 ESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYY 316
+ D+ KRPLM +A +D ++T+DNP +E+P DI ++ G
Sbjct: 443 DRDQSKRPLMAAVAERYADHVVVTNDNPRSENPTDIAQQVVQGFS--------------- 487
Query: 317 PPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESRE 376
N H + + R A+R A+ + GDMVV+AGKGHE+YQ+ GD+K F DR+ +
Sbjct: 488 ---SNNHCVI--EEREEAIRFAIHHAKIGDMVVIAGKGHESYQLIGDQKIPFSDRQVALS 542
Query: 377 ALQ 379
AL+
Sbjct: 543 ALK 545
>gi|445061748|ref|ZP_21374244.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brachyspira hampsonii 30599]
gi|444506869|gb|ELV07135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brachyspira hampsonii 30599]
Length = 508
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 219/383 (57%), Gaps = 32/383 (8%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+T ++ ++ I G ++++ TTP+++ ++N+ K L G +VME+SS LA+ RC
Sbjct: 145 KTTLIGTIKNII-GKTEIKTNLTTPESIDLENIFYKSLKKGISHIVMESSSQALAMNRCD 203
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK--VVNIDDPN---AT 118
+++D A+FTN+T DH+D+HG + Y AK KLFS + + + +K +VNID N +
Sbjct: 204 YLNYDTAIFTNITEDHLDYHGDMKNYLKAKLKLFSLLKESSKKKKLAIVNIDTDNFKQIS 263
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQV-LVNTPHGILEISSGLLGRHNI 177
++I + + +VT+ + N+KAD + L+ T+ I ++ +LGR NI
Sbjct: 264 NYIKK--LGINMVTYGI-NEKADYYGKVISLTSKNTEYEFYAKGKFISKVKLSMLGRFNI 320
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQ-AFGVIVDYAHTPDALSRL 236
N L+ +A +E V+ + +V V GR E++ +E+ F V VDY+HTPD+L +
Sbjct: 321 LNSLSILAYVCENKLDIEKSVKAMRKVQ-VAGRFEIVTKEKHPFIVAVDYSHTPDSLENI 379
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L R+L P R+I V GC G+ DR KRP+M +IA +++ ILT+DN ED I++D+
Sbjct: 380 LIEARKLNPNRVIAVFGCGGDRDRKKRPIMAEIAEKYANIAILTTDNQRTEDIEQIMNDI 439
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
G +N Y + + R+ A+ AV +E D++++AGKGHE
Sbjct: 440 EKGF-----------KNKNYKKIID---------RKEAIFEAVKEAKENDIIIIAGKGHE 479
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI DK FDDREE+R AL+
Sbjct: 480 TYQIFPDKTIHFDDREEARNALK 502
>gi|332654101|ref|ZP_08419845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Ruminococcaceae bacterium D16]
gi|332517187|gb|EGJ46792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Ruminococcaceae bacterium D16]
Length = 495
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 204/370 (55%), Gaps = 28/370 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ + G+ L + RTTP++ VQ L+ +M +G VVME SSH L R
Sbjct: 130 QVGLIGTIQNMV-GERVLPAHRTTPESYEVQQLLREMADSGCTHVVMEVSSHALVQHRVE 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
+DF +A FTNLT+DH+D+H T EEYR+AK +LF + R V+N+DD + +
Sbjct: 189 GLDFSVAAFTNLTQDHLDYHHTMEEYRSAKERLFHQC-----RRAVLNLDDEAGRWY--R 241
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
PV T++ +AD+ L + + I + + G IYN L A
Sbjct: 242 ERLACPVFTYSENKDQADLTAKGIRLYPGQVEFEAVAREQIQRVFLPIPGGFTIYNALCA 301
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
++VG+ +G L + + V GR E++ A+ V++DYAH+P+AL +L + R+
Sbjct: 302 LSVGLCLGLRLSECAAALRSARGVKGRVEVVPVPTAYTVLIDYAHSPNALENILLTARDF 361
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
R+I + GC G+ DR KRP+M + + +D+ ++TSDNP EDP DI+ D+LAG+
Sbjct: 362 TAGRLICLFGCGGDRDRTKRPIMGDVVKELADLAVVTSDNPRTEDPEDIIRDILAGM--- 418
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ-IEG 362
GE G ++ + RR A+ A++ G GD++V+AGKGHETYQ I+G
Sbjct: 419 ------EGE---------GAQIHVEPDRRQAIAWALSQGRPGDVIVLAGKGHETYQEIQG 463
Query: 363 DKKEFFDDRE 372
+ D+RE
Sbjct: 464 VQYP-MDERE 472
>gi|383111003|ref|ZP_09931821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. D2]
gi|313694574|gb|EFS31409.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. D2]
Length = 482
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 135/388 (34%), Positives = 205/388 (52%), Gaps = 43/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEPIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNIRSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G E+++ + + V GR + + Q IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGITAIVDYAHTPDALI 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ L + R+ A+R A + E+GD+++VA
Sbjct: 413 INDMLAGLDAEDMKKTLSIAD------------------RKEAIRTACMLAEKGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHE YQ K FDD+E +E +
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEVLKEIFK 482
>gi|445427024|ref|ZP_21437745.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter sp. WC-743]
gi|444752126|gb|ELW76817.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Acinetobacter sp. WC-743]
Length = 502
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 196/361 (54%), Gaps = 30/361 (8%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT DA+ +QNLM G E +EASSHGL GR + D +IA ++NL+RDH+D+
Sbjct: 153 SSHTTLDALHLQNLMHDFALQGAEFASIEASSHGLEQGRLNGCDIEIAAYSNLSRDHLDY 212
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI--AQGNPDVPVVTFAMENKKA 140
HGT E Y AK+ LF V+NIDD +A + A N P V +K A
Sbjct: 213 HGTLEAYAEAKSLLFKW---SSLKVAVINIDDAHADLMMNAASSNLSHPKVLTYSTSKAA 269
Query: 141 DVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200
D + SL + T G + S LLG NI N++A++ V G L+ ++
Sbjct: 270 DYQVFGIKYSLDGAVFHLKTAKGEFTVHSPLLGHFNIENLVASLIVAEQAGFDLQQLIAQ 329
Query: 201 IEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259
+ ++ PGR ++I D+++ F +VDYAHTPDAL+++L +++ ++ V GC G+ D
Sbjct: 330 VPKLKGAPGRMQVIRDQDRLF--VVDYAHTPDALTQVLKTLKRHVENQLWAVFGCGGDRD 387
Query: 260 RGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPL 319
RGKRPLMTK A +++ ++TSDNP E+P I DM + ++ E
Sbjct: 388 RGKRPLMTKAALEQATPVVMTSDNPRTENPEQIFADMKQDIDFSQHE------------- 434
Query: 320 PNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREA 377
+H+I RR A++ AV + GD+VV+AGKGHE YQ + +FDD E + A
Sbjct: 435 -------VHEIRDRREAIKYAVKHAQAGDIVVIAGKGHENYQEIDGVRHWFDDVVEVQSA 487
Query: 378 L 378
+
Sbjct: 488 I 488
>gi|349574835|ref|ZP_08886768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Neisseria shayeganii 871]
gi|348013623|gb|EGY52534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Neisseria shayeganii 871]
Length = 493
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 203/383 (53%), Gaps = 31/383 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + ++ +V G + ++ TTPD V VQ L+ + G +AV ME SSHGL
Sbjct: 134 LGQKCAVIGTVGNGFWGALE-DTTHTTPDPVQVQTLLHRFRAQGAQAVAMEVSSHGLDQN 192
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R V A+FTNLTRDH+D+HG Y +KAKLF RH V+N DD
Sbjct: 193 RVVGVPCSSAIFTNLTRDHLDYHGDMAGYGRSKAKLFQ--WQSLRH-AVINTDDAFGAEL 249
Query: 121 IAQ---GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
A+ P++ V+++ N++A V F+ S Q+ + TP G EI S LLGR N
Sbjct: 250 AAELRTQRPELQVLSYGF-NQEAAVRITAFQASAQGMQLKLATPWGEGEIRSRLLGRFNA 308
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+ A V + A G L +++R + ++ GR + I E V+VDYAHT DAL + L
Sbjct: 309 QNLAACVGLLCAEGFALGEVLRVLADIRPATGRMDCIMGEGRPLVVVDYAHTSDALEKAL 368
Query: 238 DSVRELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+++E+ P+ ++ V GC G DRGKRPLM A +D ++TSDNP E+P I+DD
Sbjct: 369 ATLQEIKPQGAKLWCVFGCGGNRDRGKRPLMGAAAQAGADCVVVTSDNPRMEEPQAIIDD 428
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+L P +PN ++ RR A+ AV D++++AGKGH
Sbjct: 429 IL-------------------PAVPN--PAYVDADRRAAIEYAVRHAAADDIILIAGKGH 467
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
ETYQ G +K+ F D E + AL
Sbjct: 468 ETYQDIGGQKQHFSDFEAAEAAL 490
>gi|428226731|ref|YP_007110828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geitlerinema sp. PCC 7407]
gi|427986632|gb|AFY67776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geitlerinema sp. PCC 7407]
Length = 503
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 191/356 (53%), Gaps = 24/356 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q + G E VME SSH L GR F++AVFTNLT+DH+D+H
Sbjct: 160 TTPFAADLQRQLGLAKQAGCEFAVMETSSHALDQGRVQACAFEVAVFTNLTQDHLDYHKD 219
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKA+LFS R R +VN DDP + + P V T++ ++ AD+
Sbjct: 220 MEDYFEAKARLFSPTY--LRGRAIVNQDDPYGRRLVER-LPREQVWTYSTQDASADLWTS 276
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
L + +++TP G + L+G+ N+ N LAA + +G L I + +
Sbjct: 277 DIAYELDGVKGILHTPAGEVAFHLPLVGQFNVENWLAAAGAALHLGLDLAAIAQALPGFS 336
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q V+VDYAHTPD+L +L + R P R+I V GC G+ DR KR
Sbjct: 337 GVPGRMERVQIQPDQDISVVVDYAHTPDSLENMLRAARPFIPGRMICVFGCGGDRDRTKR 396
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM +IA +DV +TSDNP EDP IL D++AG+ P
Sbjct: 397 PLMGQIAAALADVVYVTSDNPRTEDPERILQDVVAGI-------------------PAEA 437
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+ R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++R AL+
Sbjct: 438 NPTVIGDRAEAIRVAILQAQPGDGVLIAGKGHEDYQILGTEKIHFDDREQARAALE 493
>gi|399023366|ref|ZP_10725427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chryseobacterium sp.
CF314]
gi|398083061|gb|EJL73792.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chryseobacterium sp.
CF314]
Length = 486
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 200/374 (53%), Gaps = 29/374 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + +LS+V I G+ + + TTPD + + ++AK + +G E ME SSHG++
Sbjct: 129 LGYNSALLSTVEIRI-GEEIIPATHTTPDVITINQILAKAVESGCEFAFMEVSSHGISQN 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F IA FTNLT DH+D+H T ++Y K + F + D + NIDD N
Sbjct: 188 RIEGLHFKIAGFTNLTHDHLDYHKTFDDYLKTKKRFFEGLEDSA--VAITNIDDKNGNVM 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +++A++ AD H E+ +L+N E + L G+ N+YN+
Sbjct: 246 LQ--NTKAKKISYALKT-MADYHGRLLEVDF--NGMLLNFNGK--EFWTTLTGKFNVYNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L + +G ++I++ I ++ V GR E + IVDYAHTPDAL +LDS+
Sbjct: 299 LLVFGIASELGFEQDEILQAISKLKRVSGRFETFKSDGGIFFIVDYAHTPDALENILDSI 358
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
++ + R+ITV GC G+ D KRP M IAT KS + I+TSDNP EDP I+ ++ A
Sbjct: 359 NDIRTKNERLITVFGCGGDRDHSKRPEMGNIATKKSTLAIITSDNPRTEDPAQIIKEIEA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GV Q + K Y +P+ R+ A++ A+ E D+V+VAGKGHE Y
Sbjct: 419 GV--EPQNFSK------YTSIPD---------RKEAIKMAIKFAEPKDIVLVAGKGHENY 461
Query: 359 QIEGDKKEFFDDRE 372
Q K FDD+E
Sbjct: 462 QEINGVKHHFDDKE 475
>gi|146305952|ref|YP_001186417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas mendocina ymp]
gi|167017296|sp|A4XQR9.1|MURE_PSEMY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|145574153|gb|ABP83685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas mendocina ymp]
Length = 487
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/369 (35%), Positives = 202/369 (54%), Gaps = 25/369 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ HG + + TTPD V VQ +A + G AV ME SSHGL GR
Sbjct: 127 GERCGIVGTLGTGFHGALE-QGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLDQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ ++FD+AVFTNL+RDH+D+HG+ E Y AKAKLF+ P +V+N+DD +
Sbjct: 186 VAALEFDVAVFTNLSRDHLDYHGSMEAYGAAKAKLFAW---PNLRCRVINLDDAFGRE-L 241
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
AQ D ++ +++ + A ++ + + + + TP G + S LLGR N+ N+L
Sbjct: 242 AQQAHDSRLIGYSLSDASAFLYCSEAQFDDHGVRARLVTPRGEGVLRSNLLGRFNLSNLL 301
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
A V + + L++I++ + ++ GR + + V+VDYAHTPDAL ++L+++R
Sbjct: 302 AVVGALLGMDYGLDEILKVLPQLQGPAGRMQRLGGGDKPLVVVDYAHTPDALEKVLEAMR 361
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
R++ + GC G+ DRGKRPLM +A +DV +T DNP +EDP I+ D+ AG
Sbjct: 362 PHVQGRLVCLFGCGGDRDRGKRPLMAAVAERLADVVWVTDDNPRSEDPAQIVADIRAGFC 421
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ-I 360
Q +G D A+ +A E D++V+AGKGHE YQ I
Sbjct: 422 APEQVQFIHGRGD-------------------AIARLIAQAEAADVLVLAGKGHEDYQEI 462
Query: 361 EGDKKEFFD 369
G + F D
Sbjct: 463 TGVRHPFSD 471
>gi|410030911|ref|ZP_11280741.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Marinilabilia sp. AK2]
Length = 487
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 212/391 (54%), Gaps = 42/391 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V I+ D + + TTPDA+ +Q+L+AKML G MEASSH +
Sbjct: 130 MGYQVGLLSTVENKIN-DKVIPATHTTPDALSLQSLLAKMLDEGCTHCFMEASSHAIVQE 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + A+FTN++ DH+D+HG+ + Y AK KLF + P+ +VN DD
Sbjct: 189 RIAGLHLAGAIFTNISHDHLDYHGSFDAYIKAKKKLFDEL--PKDAFALVNADDKRGMVM 246
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI-LEISSG-----LLGR 174
+ N TF ++ +P F+ +VL NT G+ L+I++ ++G
Sbjct: 247 LQ--NCKATQQTFGLK------YPAD-----FKAKVLSNTIEGLELDINNKQIWFRMIGE 293
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N YN+LA + +G E+++ + +V GR + I IVDYAHTPDAL
Sbjct: 294 FNAYNLLAVYGAAVLLGEDEEEVLMQLSKVKGAQGRFDRI-SMHGITAIVDYAHTPDALE 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L +++ + ++ITVVGC G DR KRP+M KIAT SD ILTSDNP +E P+ I
Sbjct: 353 NVLKTIKGVRTGGEQVITVVGCGGNRDRAKRPIMAKIATQYSDKVILTSDNPRDEAPMAI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ +M AGV P+ + + D RR A++ A M ++GD++++AG
Sbjct: 413 IKEMEAGVN----------------PVDFKKTIVIED-RREAIKTAGIMAQKGDIILIAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESREALQYVDE 383
KGHETYQ K FDDR +E L +++
Sbjct: 456 KGHETYQEIKGVKHPFDDRLVVKEMLNLLNK 486
>gi|403511220|ref|YP_006642858.1| UDP-N-acetylmuramyl-tripeptide synthetase family protein
[Nocardiopsis alba ATCC BAA-2165]
gi|402799239|gb|AFR06649.1| UDP-N-acetylmuramyl-tripeptide synthetase family protein
[Nocardiopsis alba ATCC BAA-2165]
Length = 554
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 146/391 (37%), Positives = 201/391 (51%), Gaps = 41/391 (10%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ TG++ +V + GD ++ S TTP+A + L A M G A ME SSH LALGR
Sbjct: 153 GMSTGLVGTVEMRV-GDERVASSLTTPEATDLHGLFAVMAERGITAAAMEVSSHALALGR 211
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
+D+A+FTNL++DH+DFH +Y + KA+LF+ PE VVN DD +
Sbjct: 212 VGGARYDVAIFTNLSQDHLDFHSDLRDYFDTKARLFT----PEYCDIAVVNTDDRFGRAL 267
Query: 121 I--AQGNPDVPVVTFAMENK---------KADVHPLKFELSLFETQVLVNTPHGI-LEIS 168
+ G D+PV TFA+E +AD + + L + V P G+ E S
Sbjct: 268 VDMVAGRGDIPVTTFAVEGGSDAGPENGMEADWNAVDVRLGDTGSSFRVVGPGGMEAEAS 327
Query: 169 SGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELID-----EEQAFGVI 223
L G N+ N +AA+ + G P+E + G+ VPGR E + EQ F +
Sbjct: 328 VALPGPFNVSNAMAAIVGLVEAGLPMETAIAGVAAAPGVPGRMEPVAARSAASEQDFTAL 387
Query: 224 VDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDN 283
VDY+H P A+ +LDS+R RI VVGC G+ DR KRPLM + A +D I+T+DN
Sbjct: 388 VDYSHKPGAIEAVLDSLRATTKGRITMVVGCGGDRDRAKRPLMGEAAARLADQVIITNDN 447
Query: 284 PMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHR--LFLHDIRRVAVRCAVAM 341
P +EDP+ I ML GV +P HR + + R A+ VA
Sbjct: 448 PRSEDPVSIAAAMLEGVAK----------------VPENHRAHVTVELDRAEAIGLGVAR 491
Query: 342 GEEGDMVVVAGKGHETYQIEGDKKEFFDDRE 372
GD++VVAGKGHET Q + FDDRE
Sbjct: 492 TGPGDVIVVAGKGHETGQYVKGEMLPFDDRE 522
>gi|320106394|ref|YP_004181984.1| UDP-N-acetylmuramyl tripeptide synthetase [Terriglobus saanensis
SP1PR4]
gi|319924915|gb|ADV81990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis
SP1PR4]
Length = 506
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 201/371 (54%), Gaps = 29/371 (7%)
Query: 18 DNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTR 77
+N SP TTP++ V + A+ + G VME SSH L R + D+AVFTNLT+
Sbjct: 148 ENVRPSPHTTPESRDVLEIFAEGVRAGATEAVMEMSSHALVQERVWGLPLDVAVFTNLTQ 207
Query: 78 DHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMEN 137
DH+D+HGT EY AKA +F + V+N DDP+A + + V T+ +
Sbjct: 208 DHLDYHGTMGEYARAKALMFRGVGTLPPRIAVINADDPSA-GMMVEAASGCEVWTYRVGA 266
Query: 138 KKADVHPLKF-----ELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGA 192
++ D + +F +L T+ + TP G + S L GR N+YN++AA+A G+A G
Sbjct: 267 REFDENAYEFVADDVKLGAGWTEFALVTPMGERVVRSQLTGRVNVYNLVAAMATGMARGL 326
Query: 193 PLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPR-RIITV 251
L++ VRG E+ VPGR E + + V+VDYAHT DAL L+ REL R+IT+
Sbjct: 327 SLDECVRGAAELLPVPGRFETVGNDLGITVVVDYAHTDDALRNLIGLARELVGEGRVITM 386
Query: 252 VGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYG 311
GC G+ DR KRP M + A D SD+ I+TSDNP +EDP I D+L G +Q+
Sbjct: 387 FGCGGDRDRTKRPKMGRAAGDGSDLVIVTSDNPRSEDPAAIAADVLVG----LQDTKAIV 442
Query: 312 ENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEF---- 367
E + R VA+R A+ + + GD+V++AGKGHE Q+
Sbjct: 443 EVELN--------------RHVAIRRAITVAKAGDIVLLAGKGHEREQVSRQGSILVSVP 488
Query: 368 FDDREESREAL 378
FDD E+R AL
Sbjct: 489 FDDVMEARAAL 499
>gi|126649879|ref|ZP_01722115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus sp. B14905]
gi|126593598|gb|EAZ87543.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus sp. B14905]
Length = 493
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 211/385 (54%), Gaps = 28/385 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG ++ + ++ + ++G ES TT DA+ Q ++ + G + ME SSHGLALG
Sbjct: 133 MGEKSALSGTIGFNLNG-ILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVSSHGLALG 191
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-VDPERHRKVV-NIDDPNAT 118
R + VD+DIA+FTNLT DH+DFHGT EEY +AK LFS++ D E+++ VV N DD +
Sbjct: 192 RLAGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE 251
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
+ A PV T+ ++N+ AD + E + T V GI + LLG NIY
Sbjct: 252 RYAAM--TPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEMSEGIYRVKMNLLGEFNIY 309
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N+LAA+ G +E I+ IE++ V GR E + + + VDYAHTPDA+ + ++
Sbjct: 310 NVLAAIVAFYGRGYTMEAIIEQIEQLPPVKGRMEKVCSDLPVQMFVDYAHTPDAIEKAIE 369
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ + ++I +VG G D+ KRP M + A+ ++ ILT+D+P ED I D+
Sbjct: 370 AAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKAS-AAEYVILTTDDPRYEDYNSITGDLAK 428
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ +D + + + R AVR A+ + E GDM++ AGKGHE Y
Sbjct: 429 GM-----------LHDNFACIGD---------RAEAVRHAIEVAEPGDMIIFAGKGHEDY 468
Query: 359 QIEGDKKEFFDDREESREA--LQYV 381
QI + K D E + EA L++V
Sbjct: 469 QIIENTKFPHSDAEIAIEAGRLKFV 493
>gi|169826861|ref|YP_001697019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Lysinibacillus sphaericus C3-41]
gi|168991349|gb|ACA38889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Lysinibacillus sphaericus C3-41]
Length = 493
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 211/385 (54%), Gaps = 28/385 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG ++ + ++ + ++G ES TT DA+ Q ++ + G + ME SSHGLALG
Sbjct: 133 MGEKSALSGTIGFNLNG-ILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVSSHGLALG 191
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-VDPERHRKVV-NIDDPNAT 118
R + VD+D+A+FTNLT DH+DFHGT EEY +AK LFS++ D E+++ VV N DD +
Sbjct: 192 RLAGVDYDVAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE 251
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
+ A PV T+ ++N+ AD + E + T V GI + LLG NIY
Sbjct: 252 RYAAM--TPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEMSEGIYRVKMNLLGEFNIY 309
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N+LAA+ G +E I+ IE++ V GR E + E + VDYAHTPDA+ + ++
Sbjct: 310 NVLAAMVAFYGRGYSMEAIIEQIEQLPPVKGRMEKVCSELPVQMFVDYAHTPDAIEKAIE 369
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ + ++I +VG G D+ KRP M + A+ ++ ILT+D+P ED I D+
Sbjct: 370 AAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKAS-AAEYVILTTDDPRYEDYNSITGDLAK 428
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ +D + + + R AVR A+ + E GDM++ AGKGHE Y
Sbjct: 429 GM-----------LHDNFACIGD---------RAEAVRHAIEVAEPGDMIIFAGKGHEDY 468
Query: 359 QIEGDKKEFFDDREESREA--LQYV 381
QI + K D E + EA L++V
Sbjct: 469 QIIENTKFPHSDAEIAIEAGRLKFV 493
>gi|300774442|ref|ZP_07084305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chryseobacterium gleum ATCC 35910]
gi|300506257|gb|EFK37392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chryseobacterium gleum ATCC 35910]
Length = 486
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 135/374 (36%), Positives = 198/374 (52%), Gaps = 29/374 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G +LS+V I G+ + + TTPD + + ++A+ + G E ME SSHG+A
Sbjct: 129 LGYPAALLSTVEIRI-GEEIIPATHTTPDVITINRILAEAVEKGCEFAFMEVSSHGIAQN 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F IA FTNLT DH+D+H T EEY K + F + D + N+DD N
Sbjct: 188 RIEGLHFKIAGFTNLTHDHLDYHKTFEEYLKTKKRFFDELEDTA--IAITNVDDKNGNVM 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N ++A++ AD H E+ +L+N E + L G+ N+YN+
Sbjct: 246 LQ--NTKAKKKSYALKT-MADYHGKLLEVDF--NGMLLNFNGK--EFWTTLTGKFNVYNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L + +G ++I++ I ++ V GR E + IVDYAHTPDAL +LDS+
Sbjct: 299 LLVFGIAAELGFEQDEILQAISKLKRVSGRFETFKSDGGIFFIVDYAHTPDALENILDSI 358
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
++ + R+ITV GC G+ D KRP M IAT KS + I+TSDNP EDP I+ ++ A
Sbjct: 359 NDIRTKNERLITVFGCGGDRDHSKRPEMGNIATKKSTLAIITSDNPRTEDPTQIIKEIEA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GV Q + K Y +P+ R+ A++ A+ E D+V+VAGKGHETY
Sbjct: 419 GV--EPQNFSK------YTSIPD---------RKEAIKMAIKFAEPKDIVLVAGKGHETY 461
Query: 359 QIEGDKKEFFDDRE 372
Q K FDD+E
Sbjct: 462 QEINGVKHHFDDKE 475
>gi|419953367|ref|ZP_14469512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri TS44]
gi|387969959|gb|EIK54239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri TS44]
Length = 487
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 136/378 (35%), Positives = 211/378 (55%), Gaps = 24/378 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G R G++ ++ HG+ + + TTPDA+ VQ +A + + AV ME SSHGL G
Sbjct: 126 LGERCGIIGTLGTGFHGELE-QGYHTTPDAIGVQATLANLKQHEARAVAMEVSSHGLEQG 184
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + FD+AVFTNL+RDH+D+HG+ E Y AKA+LF P +V+N+DD
Sbjct: 185 RVAALAFDVAVFTNLSRDHLDYHGSMEAYAAAKARLFDM---PGLRCRVINLDDAFGRCL 241
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
AQ + ++T+++E+ AD++ + +L Q + TP G + S LLGR N+ N+
Sbjct: 242 AAQPQ-ESRLITYSLEDASADLYCPEPQLDDDGIQARLITPQGERSLRSPLLGRFNVSNV 300
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAAV + + PL++I+ + E+ GR + + V+VDYAHTPDAL ++L ++
Sbjct: 301 LAAVGALLGMDWPLDEILAVLPELHGPAGRMQRLGGGDLPLVVVDYAHTPDALEKVLTAL 360
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R A +++ + GC GE DRGKR LM ++A +D + T DNP NE IL+D+ G
Sbjct: 361 RPHARGQLVCLFGCGGERDRGKRALMAQVAERLADRVVATDDNPRNEPAEQILEDIRQGF 420
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ + G R A+ A+A + D+V++AGKGHE YQ
Sbjct: 421 AQPERVQFRPG-------------------RGAAIAAAIAAAQPEDVVLLAGKGHEDYQE 461
Query: 361 EGDKKEFFDDREESREAL 378
++ F D +E+R+AL
Sbjct: 462 ICGVRQPFSDLDEARKAL 479
>gi|169350191|ref|ZP_02867129.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552]
gi|169292974|gb|EDS75107.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium spiroforme DSM 1552]
Length = 454
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 206/372 (55%), Gaps = 36/372 (9%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ L +V +Y +G+ K E TTPD ++ +++ + +NG E VME SSH LA R
Sbjct: 107 KVAYLGTVGFY-YGNIKKEVVNTTPDVDVLYSMLLEAKNNGVEYFVMEVSSHALAKQRIY 165
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKV--VNIDDPNATSFI 121
++FD FTNLT+DH+D+H T E Y NAK KLF + R+ K+ +N DD + F+
Sbjct: 166 GLEFDEVAFTNLTQDHLDYHKTLENYANAKRKLFEKT----RNNKIAIINGDDIHHQHFM 221
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+GN ++ V+ ++ + D L E F+ + L N+ H + ++GR+NIYN L
Sbjct: 222 LEGNNNI-VIDRDVKIENVDFSHLGTE---FDFRYLDNSYH----VRLNMVGRYNIYNYL 273
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
A+ + +G +EDI+ E++ A GR ELI + + VDYAHTPDA+ +L S +
Sbjct: 274 TALLLVNKLGFKIEDILLLNEKLKAPAGRMELI-KYNTNSIFVDYAHTPDAVENVLKSAQ 332
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
E +IIT++GC G D KRP+M KIA D SD I TSDNP E+P IL+D+ A +
Sbjct: 333 EFKKGKIITIIGCGGNRDATKRPIMGKIAVDNSDYVIFTSDNPRKEEPEAILNDITANL- 391
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
+ + + + R+ A+ V M +E D++++ GKGHE YQ
Sbjct: 392 -----------------ISDNFEIIVE--RQDAIYKGVKMLDENDILMILGKGHENYQET 432
Query: 362 GDKKEFFDDREE 373
D K F D+EE
Sbjct: 433 KDGKRHFSDQEE 444
>gi|390946708|ref|YP_006410468.1| UDP-N-acetylmuramyl tripeptide synthetase [Alistipes finegoldii DSM
17242]
gi|390423277|gb|AFL77783.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alistipes finegoldii DSM
17242]
Length = 485
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 197/387 (50%), Gaps = 45/387 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G++S+V Y + G+ +E+ TTPD V + +M +M G E ME SSH +
Sbjct: 130 LGHKAGLISTVVYKV-GERTVEATHTTPDPVRLNAMMREMADEGCEYCFMECSSHAIVQE 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +F+N+T DH+D+H T EY AK KLF + E + N DD N
Sbjct: 189 RTRGLHFAGGIFSNITHDHLDYHKTFAEYIRAK-KLFFDSLSKEAF-ALTNADDKNGRVM 246
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKF-ELSLFETQVLVNTPHGIL------EISSGLLG 173
+ +N A +H ++ F +++ P G+L E+ GL+G
Sbjct: 247 V--------------QNTAAAIHTYSLRSMADFRCKIVEMHPDGMLLRIDGQEVWVGLVG 292
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
R N YN+LA + +G + +R + V GR EL+ +VDYAHTPDAL
Sbjct: 293 RFNAYNLLAVYGAAVLLGFDRGETLRAASMLHPVSGRFELVRSANGVTAVVDYAHTPDAL 352
Query: 234 SRLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
++ ++ E+ +++I V GC G+ DR KRP M +IA +D + TSDNP +E P
Sbjct: 353 ENVIRTIEEIRTPAQKLIVVCGCGGDRDRTKRPEMAQIAVRYADTAVFTSDNPRHESPEA 412
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
ILD M AG L G R R A+R AV + + GD+++VA
Sbjct: 413 ILDQMAAG-------------------LEPGARFLRIADRAEAIRTAVMLSQPGDILLVA 453
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHETYQI GD K FDDREE R+A
Sbjct: 454 GKGHETYQIVGDVKHPFDDREEVRKAF 480
>gi|332881746|ref|ZP_08449394.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|357044610|ref|ZP_09106259.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Paraprevotella clara YIT
11840]
gi|332680385|gb|EGJ53334.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|355532417|gb|EHH01801.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Paraprevotella clara YIT
11840]
Length = 485
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 143/382 (37%), Positives = 200/382 (52%), Gaps = 33/382 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+ S+V YI D + + TTPD + + L+ +M G + ME SSH +A
Sbjct: 131 FGYKCGLCSTVCNYID-DEAVPTEHTTPDPITLNRLLGRMADEGCKYAFMEVSSHAVAQH 189
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + F +FTNLTRDH+D+H T E YR+AK F + P+ V N+DD N
Sbjct: 190 RIAGLKFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDGL--PKGAFAVTNVDDRNG--M 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVL-VNTPHGILEISSGLLGRHNIYN 179
I N V T+++ AD E S FE L VN E+S +GR N+ N
Sbjct: 246 IMVQNTKAVVKTYSLR-AAADFKAKVLEES-FEGMCLDVNGK----EVSVPFIGRFNVSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA A + +G ED++ + + V GR E I ++ IVDYAHTPDAL +L +
Sbjct: 300 LLAVYAAAVCMGRGAEDVLVALSTLRPVNGRFETIRSKEGVTAIVDYAHTPDALVNVLST 359
Query: 240 VRELAPRR--IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
V E+ RR +ITV G G D+GKRP+M + A SD I+TSDNP E+P +I++DML
Sbjct: 360 VNEILKRRGEVITVCGAGGNRDKGKRPIMAQEAVKNSDRVIITSDNPRFEEPQEIINDML 419
Query: 298 AGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG+ M++ + + R+ A+R A M GD+V+VAGKGHE
Sbjct: 420 AGLDKEEMRKVISIVD------------------RKEAIRTACMMARPGDVVLVAGKGHE 461
Query: 357 TYQIEGDKKEFFDDREESREAL 378
YQ K FDD E +E
Sbjct: 462 DYQEVKGVKHHFDDHEVIKEVF 483
>gi|408673190|ref|YP_006872938.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
iaminopimelateligase [Emticicia oligotrophica DSM 17448]
gi|387854814|gb|AFK02911.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
iaminopimelateligase [Emticicia oligotrophica DSM 17448]
Length = 483
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 199/383 (51%), Gaps = 35/383 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G R G+LS+V I D+ + S TTPD+V + L+A ML G ME SSH +
Sbjct: 129 LGYRCGLLSTVQNQID-DDIIPSTHTTPDSVKINELLADMLQKGVTYCFMEVSSHSVVQE 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + F +FTN+T DH+DFHGT + Y AK F ++ P +VN DD N
Sbjct: 188 RIAGLYFAGGIFTNITHDHLDFHGTFDNYLKAKKGFFDQL--PASAFALVNTDDKNGK-- 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLK---FELSLFETQVLVNTPHGILEISSGLLGRHNI 177
I N T++++N + K SLF Q+ ++ E+ L+G N
Sbjct: 244 IMLQNTVARKETYSLKN----IGTFKGKVLACSLFGLQMEIDNK----EVWFKLIGSFNA 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+L + +G E+++ + ++ GR E + + IVDYAHTPDAL +L
Sbjct: 296 YNLLGVYGAAVLLGENSEEVLMQLSDIQPPAGRFEQVVSKNNIVGIVDYAHTPDALKNVL 355
Query: 238 DSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+++ +L ++IITVVGC G D KRP+M +IA SD ILTSDNP NEDP+DIL
Sbjct: 356 ETIVDLREGNQQIITVVGCGGNRDAAKRPIMAEIACKLSDKVILTSDNPRNEDPMDILGQ 415
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
M GV PPL + D R A+ AV M + D+++VAGKGH
Sbjct: 416 MQKGV----------------PPLHFKKTQTIED-RHEAILIAVKMAKPEDIILVAGKGH 458
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
ETYQ K FDD+E +EA
Sbjct: 459 ETYQEIKGVKHHFDDKEVLKEAF 481
>gi|255656642|ref|ZP_05402051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile QCD-23m63]
gi|296449902|ref|ZP_06891666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium difficile NAP08]
gi|296878283|ref|ZP_06902292.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium difficile NAP07]
gi|296261172|gb|EFH08003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium difficile NAP08]
gi|296430731|gb|EFH16569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium difficile NAP07]
Length = 484
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 195/389 (50%), Gaps = 49/389 (12%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ + G+ + S TTP+++ +Q ML NG + ME SSH LAL R
Sbjct: 130 KVGLIGTIKIF-DGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEVSSHSLALNRVD 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E DF + +FTNLT DH+DFH E+YR AK KLF + ++NIDD
Sbjct: 189 ETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFKTT----MANIINIDDEGGKKIYEN 244
Query: 124 -GNPDVPVVTFAMENK--------KADVHPLKFELSL--FETQVLVNTPHGILEISSGLL 172
+VP T+ ++ K+D + + L +E + + P
Sbjct: 245 IKGINVPCYTYGVDTNADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP----------- 293
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
G +YN LA +A +G P G+ + V GR E + ++ VIVDYAHTPDA
Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVPNDKGISVIVDYAHTPDA 353
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L +L + ++ A +II+V GC G+ D KRPLM I SD+ I+TSDNP E+P I
Sbjct: 354 LENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIITSDNPRTEEPEAI 413
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVV 350
+ D+L G+ + Y H + R A+ A++M ++ D+V++
Sbjct: 414 IKDILEGIDKKKENY--------------------HVVVDREQAISEAISMAKKDDVVII 453
Query: 351 AGKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHETYQI G K FDD+E + E L
Sbjct: 454 TGKGHETYQIIGKVKHHFDDKEVANECLS 482
>gi|392546797|ref|ZP_10293934.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pseudoalteromonas rubra ATCC 29570]
Length = 492
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 210/387 (54%), Gaps = 37/387 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL G++ ++ Y D+ TTP V +Q ++ ++ H+ + ME SSHGL GR
Sbjct: 128 GLPGGVIGTLGYGAP-DSLTPLHNTTPSHVDLQRILNELRHS-YQLAAMEVSSHGLVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
++ FD+AVFTNL+RDH+D+HGT E Y AK +LFS + H VVNIDDP A ++
Sbjct: 186 VAQCQFDVAVFTNLSRDHLDYHGTMENYAEAKLQLFSEC---QPHYGVVNIDDPWAQRWL 242
Query: 122 AQGNPDVPVVTFAMENKKAD-------VHPLKFELSLFETQVL---VNTPHGILEISSGL 171
G PV K D H + F + F +Q + ++T G EIS+ L
Sbjct: 243 QAGKIGHPV---GFGRKPVDDRLHETLQHFVYFSEAQFNSQGIHCRLHTSWGDAEISTPL 299
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD 231
G N+YN+ AA AV + G PL +V+G ++ V GR + ID +VDYAHTPD
Sbjct: 300 FGEFNLYNLSAAFAVLLTQGIPLTQLVKGAAQLQPVTGRMQAIDVAGQPTCVVDYAHTPD 359
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
AL+ L +++ P ++ V GC GE D+GKR LM + A +D ++TSDNP EDPL
Sbjct: 360 ALALALQALQLHVPGKVTCVFGCGGERDKGKRALMAQAAERYADTLVITSDNPRGEDPLA 419
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
I++D+ AG+ + +Y P+ R A+R A+ ++ ++++A
Sbjct: 420 IINDIKAGL----------SKPEYALCQPD---------RATAIREAIQGADQHSVILIA 460
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI G+++ F D ++ L
Sbjct: 461 GKGHEDYQIIGNQRLAFSDISWAQTIL 487
>gi|338210534|ref|YP_004654583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Runella slithyformis DSM 19594]
gi|336304349|gb|AEI47451.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Runella slithyformis DSM 19594]
Length = 487
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 204/384 (53%), Gaps = 35/384 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G R G+LS+V I D+ + S TTPD+V + L+A+M+ G ME SSH +
Sbjct: 131 LGYRVGLLSTVQNQID-DDIIPSTHTTPDSVRINELLAEMVRRGCTHCFMEVSSHAVVQE 189
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + F +FTN+T DH+DFH T + Y AK F ++ P+ +VNIDD
Sbjct: 190 RIAGLLFSGGIFTNITHDHLDFHKTFDNYIKAKKGFFDQL--PKHAFALVNIDDRRGGVM 247
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFEL---SLFETQVLVNTPHGILEISSGLLGRHNI 177
+ N T++++ + K +L SLF Q+ ++ E+ L+G+ N
Sbjct: 248 VQ--NTAARKETYSLQT----IATFKGKLLADSLFGLQMEIDGK----EVWFKLIGKFNA 297
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+L + +G E ++ + E+ PGR E + A IVDYAHTPDAL +L
Sbjct: 298 YNLLGVYGAALLLGEDDEQVLTALSEITPPPGRFEQVVSADAVVGIVDYAHTPDALQNVL 357
Query: 238 DSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+++ EL R++ITVVGC G D KRP M +IA + S ILTSDNP NE+P IL+
Sbjct: 358 ETINELREGDRQVITVVGCGGNRDAAKRPEMARIAGELSSKVILTSDNPRNEEPATILEQ 417
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
M G+ + +K E+ RR A+R AV++ + D+++VAGKGH
Sbjct: 418 MEVGISPVDYKKMKVIED-----------------RREAIRFAVSLAKPHDIILVAGKGH 460
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQ K FDDREE R A +
Sbjct: 461 ETYQEIKGVKHHFDDREELRAAFE 484
>gi|380693290|ref|ZP_09858149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides faecis MAJ27]
Length = 482
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 204/385 (52%), Gaps = 43/385 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DQPIPTEHTTPDPITLNRLLGQMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +V+ + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGRVIESHFEGMLLDFNKHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G E+++ + + V GR + I + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLIALSTLHPVAGRFDAIRSPKGVTAIVDYAHTPDALI 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ L + R+ A+R A + E+GD+++VA
Sbjct: 413 INDMLAGLDAEDMRKTLSIAD------------------RKEAIRTACMLAEKGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESRE 376
GKGHE YQ K FDD+E +E
Sbjct: 455 GKGHENYQEIRGVKHHFDDKEVLKE 479
>gi|410471656|ref|YP_006894937.1| murein precusor biosynthesis bifunctional protein [Bordetella
parapertussis Bpp5]
gi|408441766|emb|CCJ48261.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella parapertussis Bpp5]
Length = 945
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 200/390 (51%), Gaps = 35/390 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG G + ++ + L TTPD + + +A+M G AV +EASS G+ G
Sbjct: 136 MGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQG 195
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + +A FTNLTRDH+D+HGT + Y AKA LF P+ VVN DDP
Sbjct: 196 RLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQW---PDLQAAVVNADDPAGERL 252
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+A P ++++ ADVH + + + P G +I + LLG+HNI N+
Sbjct: 253 LAS-LPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNL 311
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE---------LIDEEQAFGVIVDYAHTPD 231
L +G PL I R + + V GR + L Q V+VDYAHTPD
Sbjct: 312 LLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPD 371
Query: 232 ALSRLLDSVRELAPR---RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
AL+R L ++R +A R++ V GC GE D GKRP M +IA +++D ++TSDNP +E
Sbjct: 372 ALARALTALRPVAQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSES 431
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P DI+D +LAG+ P G R + R +A+ + D++
Sbjct: 432 PQDIIDQILAGI-------------------PAGMRAAVQPDRALAIMQTLWSAAPDDVI 472
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREAL 378
++AGKGHETYQ G +K FDDR+ +R AL
Sbjct: 473 LLAGKGHETYQDIGGRKLPFDDRQWARLAL 502
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 6/183 (3%)
Query: 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDV 128
+A+ TN R+H +F T E + + + PE V D+P A +
Sbjct: 665 VALVTNAQREHQEFMHTVEAVAHENGAVIGAL--PEDGVAVYPGDEPYAAIWDKLAGARR 722
Query: 129 PVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGI 188
V+ F ++ DV+ + TQ V TP G E+ + G HN+ N LAA+A G+
Sbjct: 723 -VLRFGLQ-PGLDVYAERVVTQAHGTQCGVVTPAGSAELDLPVPGLHNLRNALAAIACGL 780
Query: 189 AVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVREL-APR 246
A GAPL + + AV GR + +I D Y PD+ +D + L APR
Sbjct: 781 AAGAPLHTCIAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPR 840
Query: 247 RII 249
++
Sbjct: 841 ALV 843
>gi|355650323|ref|ZP_09056023.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Pseudomonas sp. 2_1_26]
gi|354826872|gb|EHF11075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Pseudomonas sp. 2_1_26]
Length = 487
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 204/379 (53%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ +G LES R TTPD + VQ +A + G AV ME SSHGL
Sbjct: 126 LGERCGIVGTLGTGFYG--ALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FDIAVFTNL+RDH+D+HG+ E Y AKAKLF+ P +V+N+DD
Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAW---PGLRCRVINLDDDFGRR 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + ++T+++ + A ++ + + + TPHG + S LLGR N+ N
Sbjct: 241 LAGE-EQNSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + +G PL DI+R + ++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 300 LLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDALEKVLEA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM IA +D ++T DNP E I+ D+ G
Sbjct: 360 LRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ D LP+ H I AV D+V++AGKGHE YQ
Sbjct: 420 ----------FAAADKVTFLPSRGEAIAHLIASAAVD---------DVVLLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREAL 378
+ F D E++ AL
Sbjct: 461 EIDGVRHPFSDIEQAERAL 479
>gi|389580282|ref|ZP_10170309.1| UDP-N-acetylmuramyl-tripeptide
synthetase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
alanine ligase [Desulfobacter postgatei 2ac9]
gi|389401917|gb|EIM64139.1| UDP-N-acetylmuramyl-tripeptide
synthetase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
alanine ligase [Desulfobacter postgatei 2ac9]
Length = 1000
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 201/380 (52%), Gaps = 13/380 (3%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ G++ +++ G +++P TTPDAV +Q M M G V+ME SSH L R
Sbjct: 137 GITCGVIGTINIRYPG-TTIDNPVTTPDAVCLQKTMHDMKLAGVTHVIMEVSSHSLNQHR 195
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP----ERHRKVVNIDDPNA 117
+F+ AVFTNLT+DH+D+H E+Y K LF+R + P R + V+NID+
Sbjct: 196 VDGCEFNAAVFTNLTQDHLDYHDGFEDYFACKRVLFTRCLGPFGDGTRGKAVINIDNEYG 255
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
T N +P + + + ++AD+ + + + +++ ++S L GR N+
Sbjct: 256 TRLADSLN--LPAIRVSAD-READIRAIDITDDIHGLRAILDFSGVHAPMTSVLTGRFNL 312
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
NIL A +A G E I RGI ++ VPGR E + E + VDYAHTPDAL +L
Sbjct: 313 ENILCAAGAALATGICPESIARGIAALERVPGRLEKLPTELNRHIFVDYAHTPDALESIL 372
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ AP R+ITV GC G+ DR KR M IA SD+ I+TSDNP E+P ++D+++
Sbjct: 373 KTLAGRAPARLITVFGCGGDRDRTKRGPMGVIACKYSDIAIVTSDNPRTENPNAVIDEII 432
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+ + E D Y P R A+ AV + + D++V AGKGHET
Sbjct: 433 DGI-----RAQGFKEIDPYSPGACEKGYIRMTDRAKALALAVRISKPQDIIVAAGKGHET 487
Query: 358 YQIEGDKKEFFDDREESREA 377
YQI FDD+E A
Sbjct: 488 YQITNAGTIHFDDKEHLTNA 507
>gi|386827903|ref|ZP_10115010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beggiatoa alba B18LD]
gi|386428787|gb|EIJ42615.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beggiatoa alba B18LD]
Length = 493
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/381 (34%), Positives = 202/381 (53%), Gaps = 25/381 (6%)
Query: 5 TGMLSSVSYYIHGD-NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
T ++ ++ Y + + N + + TTPDA+ +Q + A+ V ME SSH LA GR +
Sbjct: 133 TALIGTLGYTTYKEYNLISTHHTTPDALQLQAIFAEFRAKNITDVSMEVSSHALAQGRVN 192
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
+ F AVFTNL+RDH+D+H T EEY K LF V+NIDDP +F+A+
Sbjct: 193 ALHFKTAVFTNLSRDHLDYHQTMEEYAEVKRLLFQW---EGLENAVINIDDPVGRNFLAR 249
Query: 124 GNPDVPVVTFAMENKKADVHPLK----FELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
V +T+ ++ P+ L +L+ TP G ++S L G+ NI N
Sbjct: 250 LPNHVHCLTYGLDTDNLMNKPMISAEIINRDLQGCTLLLKTPVGQQQVSIPLFGQFNISN 309
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV V ++ P + +++ + + V GR E + + +IVDYAHTPDAL ++L +
Sbjct: 310 VLAAVGVLLSYNIPFDTVIKSLPHLKPVAGRMEYFHTDDSPTIIVDYAHTPDALQKVLLT 369
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R+ ++ V GC G DRGKRPLM +IA +D ++T DNP ED I+ D+LAG
Sbjct: 370 LRQHCKGQLYCVFGCGGNRDRGKRPLMGEIAQTIADQVVITDDNPRQEDSNAIIRDILAG 429
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ P R+ + R A+R + D+V++AGKGHE YQ
Sbjct: 430 C---------------HTNAPVQPRVIAN--REEAIRATIQHAMRQDIVLIAGKGHEDYQ 472
Query: 360 IEGDKKEFFDDREESREALQY 380
GD+ +F DR+ ++ L++
Sbjct: 473 EIGDQCLYFSDRQLVKDILKH 493
>gi|408416921|ref|YP_006627628.1| murein biosynthesis bifunctional protein [Bordetella pertussis
18323]
gi|401779091|emb|CCJ64574.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella pertussis 18323]
Length = 945
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 200/390 (51%), Gaps = 35/390 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG G + ++ + L TTPD + + +A+M G AV +EASS G+ G
Sbjct: 136 MGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQG 195
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + +A FTNLTRDH+D+HGT + Y AKA LF P+ VVN DDP
Sbjct: 196 RLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQW---PDLQAAVVNADDPAGERL 252
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+A P ++++ ADVH + + + P G +I + LLG+HNI N+
Sbjct: 253 LAS-LPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNL 311
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE---------LIDEEQAFGVIVDYAHTPD 231
L +G PL I R + + V GR + L Q V+VDYAHTPD
Sbjct: 312 LLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPD 371
Query: 232 ALSRLLDSVRELAPR---RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
AL+R L ++R +A R++ V GC GE D GKRP M +IA +++D ++TSDNP +E
Sbjct: 372 ALARALTALRPVAQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSES 431
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P DI+D +LAG+ P G R + R +A+ + D++
Sbjct: 432 PQDIIDQILAGI-------------------PAGMRAAVQPDRALAIMQTLWSAAPDDVI 472
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREAL 378
++AGKGHETYQ G +K FDDR+ +R AL
Sbjct: 473 LLAGKGHETYQDIGGRKLPFDDRQWARLAL 502
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 6/183 (3%)
Query: 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDV 128
+A+ TN R+H +F T E + + + PE V D+P A +
Sbjct: 665 VALVTNAQREHQEFMHTVEAVAHENGAVIGAL--PEDGVAVYPGDEPYAAIWDKLAGARR 722
Query: 129 PVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGI 188
V+ F ++ DV+ + TQ V TP G + + G HN+ N LAA+A G+
Sbjct: 723 -VLRFGLQ-PGLDVYAERVVTQAHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGL 780
Query: 189 AVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVREL-APR 246
A GAPL + + AV GR + +I D Y PD+ +D + L APR
Sbjct: 781 AAGAPLHTCIAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPR 840
Query: 247 RII 249
++
Sbjct: 841 ALV 843
>gi|386813908|ref|ZP_10101132.1| UDP-N-acetylmuramyl-tripeptide synthase [planctomycete KSU-1]
gi|386403405|dbj|GAB64013.1| UDP-N-acetylmuramyl-tripeptide synthase [planctomycete KSU-1]
Length = 491
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 138/378 (36%), Positives = 202/378 (53%), Gaps = 24/378 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ Y I G + + TTP++V +Q+ +++ML + V+EASSH L+ R
Sbjct: 129 GSEAGLIGTIQYQI-GKRVIPAQETTPESVEIQSYLSQMLKSDIRYAVIEASSHALSQHR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ F A+FTNL+ +H+D+H + YR K KL ++ V+N D N + +
Sbjct: 188 LDGIHFSSAIFTNLSAEHLDYHENIKSYREEKLKLVKKL--DSGAMTVLNADH-NMSRYF 244
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
AQ V+ + ++ K ADV L T+ L+N+P G I L+G+HNIYN L
Sbjct: 245 AQCTKS-RVIWYGIKRKNADVIAEDIHLGNDTTRFLLNSPWGKKTIHLKLVGKHNIYNAL 303
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
A+ A +A G ++ I GIE + VPGR E ID Q F V +DYAHT AL +L ++R
Sbjct: 304 ASAASTLAQGFTIDTIKTGIESLPMVPGRLEKIDCGQDFLVYIDYAHTHQALQVILSTLR 363
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
E+ RRI+ V GC G+ DR KRP M IA SD+ +TSDNP +EDP I+ ++ G
Sbjct: 364 EITTRRILLVFGCGGDRDRKKRPKMGHIAEKYSDLFWITSDNPRSEDPCSIIHEIQKG-- 421
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
L + + R+ A+ A+ + GD+V++AGKGHE YQI
Sbjct: 422 -----------------LSSKAAFRIQPDRKSAIEEALLEAKSGDVVIIAGKGHEQYQIS 464
Query: 362 GDKKEFFDDREESREALQ 379
D F D E R LQ
Sbjct: 465 KDTMTPFHDHEVVRHRLQ 482
>gi|188997127|ref|YP_001931378.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932194|gb|ACD66824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 497
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 205/384 (53%), Gaps = 31/384 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++Y + GD L S TTPD V + M G + VV E SSH R
Sbjct: 132 GYKVGVIGTINYRV-GDEILSSGHTTPDPVEWFKTLKVMKDKGADVVVAEVSSHAADQYR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
F +FTNLT+DH+D+H T E Y AK ++F ++ + + +N+DD
Sbjct: 191 VYSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRIFEQIDEFNKEAIYSINVDDEYGRRI 250
Query: 121 I------AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGR 174
+ + N D ++T+ ++ D L + LSLFET+ + +I + L G
Sbjct: 251 LDYLKNHLKVNDD-KIITYGKTSE--DFKILDYRLSLFETEFSYKYKDTLSKIKTKLRGV 307
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
NIYN+ AAV+ I G L+ + + + GR E+I E Q F V++DYAHTPDAL
Sbjct: 308 FNIYNLSAAVSFLIKDGFDLKFLEEKALHLKPIKGRFEVI-EGQGFIVVIDYAHTPDALE 366
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L S+ E+ RII V G G D+ KRPLM + A SD+ ILTSDNP NEDPL I++
Sbjct: 367 NILKSLNEIKENRIIAVFGAGGNRDKTKRPLMGETAEKLSDIVILTSDNPRNEDPLSIIE 426
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
D+L G+ + D + + R+ A+ A+++ +E D++++AGKG
Sbjct: 427 DILDGIK----------DKDKVITIVD---------RKQAIEKAISLAKEKDIILIAGKG 467
Query: 355 HETYQIEGDKKEFFDDREESREAL 378
HE YQI GDK FDD E +E +
Sbjct: 468 HENYQIIGDKILHFDDAEVVKEII 491
>gi|209523323|ref|ZP_03271879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima
CS-328]
gi|376001398|ref|ZP_09779268.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
ligase [Arthrospira sp. PCC 8005]
gi|423066594|ref|ZP_17055384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira platensis
C1]
gi|209496474|gb|EDZ96773.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima
CS-328]
gi|375330227|emb|CCE15021.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
ligase [Arthrospira sp. PCC 8005]
gi|406711902|gb|EKD07100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira platensis
C1]
Length = 498
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/355 (40%), Positives = 200/355 (56%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q+ +A + G + VME SSH L GR F +AVFTNLT+DH+D+H T
Sbjct: 161 TTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGCPFRVAVFTNLTQDHLDYHPT 220
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
++Y AKA LFS D + + ++N DD +A+ D ++++ + AD+
Sbjct: 221 MDDYFEAKALLFSD--DYLQGKAIINADDDYGKKLMARLGSDR-FWSYSVSDPSADIWAD 277
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ +++TP G S L+G++N+ N+LAA+ G+A+G L +V +
Sbjct: 278 SLVYQPTGIKGVLHTPMGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDSLPAFG 337
Query: 206 AVPGRCELI--DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E + EQ VIVDYAHTPD+L LL + R P R+I V GC G+ DR KR
Sbjct: 338 GVPGRMERVQLSPEQDITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKR 397
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA D SD+ ++TSDNP EDP IL D+LAG+ P
Sbjct: 398 PKMGKIAADLSDLAVVTSDNPRTEDPDRILQDILAGI-------------------PADV 438
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + R A+R A+ + GD V++AGKGHE YQI G +K FDDRE++R+AL
Sbjct: 439 KPIVIGDRAKAIRTAIDEAQPGDGVLIAGKGHEDYQIIGTEKVHFDDREQARDAL 493
>gi|33598266|ref|NP_885909.1| bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Bordetella parapertussis 12822]
gi|427816187|ref|ZP_18983251.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica 1289]
gi|33566824|emb|CAE39039.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella parapertussis]
gi|410567187|emb|CCN24758.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica 1289]
Length = 945
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 200/390 (51%), Gaps = 35/390 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG G + ++ + L TTPD + + +A+M G AV +EASS G+ G
Sbjct: 136 MGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQG 195
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + +A FTNLTRDH+D+HGT + Y AKA LF P+ VVN DDP
Sbjct: 196 RLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQW---PDLQAAVVNADDPAGERL 252
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+A P ++++ ADVH + + + P G +I + LLG+HNI N+
Sbjct: 253 LAS-LPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNL 311
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE---------LIDEEQAFGVIVDYAHTPD 231
L +G PL I R + + V GR + L Q V+VDYAHTPD
Sbjct: 312 LLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPD 371
Query: 232 ALSRLLDSVRELAPR---RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
AL+R L ++R +A R++ V GC GE D GKRP M +IA +++D ++TSDNP +E
Sbjct: 372 ALARALTALRPVAQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSES 431
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P DI+D +LAG+ P G R + R +A+ + D++
Sbjct: 432 PQDIIDQILAGI-------------------PAGMRAAVQPDRALAIMQTLWSAAPDDVI 472
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREAL 378
++AGKGHETYQ G +K FDDR+ +R AL
Sbjct: 473 LLAGKGHETYQDIGGRKLPFDDRQWARLAL 502
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 6/183 (3%)
Query: 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDV 128
+A+ TN R+H +F T E + + + PE V D+P A +
Sbjct: 665 VALVTNAQREHQEFMHTVEAVAHENGAVIGAL--PEDGVAVYPGDEPYAAIWDKLAGARR 722
Query: 129 PVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGI 188
V+ F ++ DV+ + TQ + TP G E+ + G HN+ N LAA+A G+
Sbjct: 723 -VLRFGLQ-PGLDVYAERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGL 780
Query: 189 AVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVREL-APR 246
A GAPL + + AV GR + +I D Y PD+ +D + L APR
Sbjct: 781 AAGAPLHTCIAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPR 840
Query: 247 RII 249
++
Sbjct: 841 ALV 843
>gi|33603177|ref|NP_890737.1| bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Bordetella bronchiseptica RB50]
gi|33568808|emb|CAE34566.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica RB50]
Length = 945
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 200/390 (51%), Gaps = 35/390 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG G + ++ + L TTPD + + +A+M G AV +EASS G+ G
Sbjct: 136 MGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQG 195
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + +A FTNLTRDH+D+HGT + Y AKA LF P+ VVN DDP
Sbjct: 196 RLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQW---PDLQAAVVNADDPAGERL 252
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+A P ++++ ADVH + + + P G +I + LLG+HNI N+
Sbjct: 253 LAS-LPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNL 311
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE---------LIDEEQAFGVIVDYAHTPD 231
L +G PL I R + + V GR + L Q V+VDYAHTPD
Sbjct: 312 LLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPD 371
Query: 232 ALSRLLDSVRELAPR---RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
AL+R L ++R +A R++ V GC GE D GKRP M +IA +++D ++TSDNP +E
Sbjct: 372 ALARALTALRPVAQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSES 431
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P DI+D +LAG+ P G R + R +A+ + D++
Sbjct: 432 PQDIIDQILAGI-------------------PAGMRAAVQPDRALAIMQTLWSAAPDDVI 472
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREAL 378
++AGKGHETYQ G +K FDDR+ +R AL
Sbjct: 473 LLAGKGHETYQDIGGRKLPFDDRQWARLAL 502
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 6/183 (3%)
Query: 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDV 128
+A+ TN R+H +F T E + + S + PE V D+P A +
Sbjct: 665 VALVTNAQREHQEFMHTVEAVAHENGAVISAL--PEDGVAVYPGDEPYAAIWDKLAGARR 722
Query: 129 PVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGI 188
V+ F ++ DV+ + TQ + TP G E+ + G HN+ N LAA+A G+
Sbjct: 723 -VLRFGLQ-PGLDVYAERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGL 780
Query: 189 AVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVREL-APR 246
A GAPL + + AV GR + +I D Y PD+ +D + L APR
Sbjct: 781 AAGAPLHTCIAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPR 840
Query: 247 RII 249
++
Sbjct: 841 ALV 843
>gi|385810786|ref|YP_005847182.1| UDP-N-acetylmuramyl tripeptide synthase [Ignavibacterium album JCM
16511]
gi|383802834|gb|AFH49914.1| UDP-N-acetylmuramyl tripeptide synthase [Ignavibacterium album JCM
16511]
Length = 488
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/382 (34%), Positives = 214/382 (56%), Gaps = 33/382 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G++TG++ +++ YI G K+++ TTP++ + + +ML+NG + VME SSH L L R
Sbjct: 136 GIKTGLIGTIANYI-GSEKIDAKLTTPESNELNDFFLQMLNNGCKNAVMEVSSHSLVLNR 194
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
++F AVFTN+T DH+DFH T E Y N+K LF + P VVN DD ++ +
Sbjct: 195 VYGLNFSGAVFTNITSDHLDFHLTFENYLNSKKILFDIL--PSNSVAVVNADDDSSKYIV 252
Query: 122 AQGNPDVPVVTFAMENKKAD--VHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + ++T+ N+ +D + ++++L+ T + E+ + L+G N YN
Sbjct: 253 S--DSKAKILTYG-RNEISDYVISSIRYDLN--GTNFTITNSGKSFEVKTKLIGEFNAYN 307
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
AA A+ + G E I+ GIE VPGR E+I IVDY+HT D+L + + +
Sbjct: 308 CTAAFAIADSFGIDKEKIISGIETTPFVPGRFEVIGTGIK-KAIVDYSHTADSLEKAILA 366
Query: 240 VRELA--PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+R++ R+++TV GC G+ D+ KRP+M K+AT+ SD+ I+TSDNP E+P I++D+
Sbjct: 367 LRQIIGNERQLVTVFGCGGDRDKTKRPVMGKVATELSDLVIITSDNPRTENPNQIINDIK 426
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV ++ EN Y A++ A+ +E +++AGKGHET
Sbjct: 427 QGV---VKNNFIVIENRYE-----------------AIKYAIKKSKEDAAILIAGKGHET 466
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ ++ F D+E +RE L
Sbjct: 467 YQEINGVRDHFSDQEIAREFLS 488
>gi|412341493|ref|YP_006970248.1| murein biosynthesis bifunctional protein [Bordetella bronchiseptica
253]
gi|408771327|emb|CCJ56127.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica 253]
Length = 945
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 200/390 (51%), Gaps = 35/390 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG G + ++ + L TTPD + + +A+M G AV +EASS G+ G
Sbjct: 136 MGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQG 195
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + +A FTNLTRDH+D+HGT + Y AKA LF P+ VVN DDP
Sbjct: 196 RLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQW---PDLQAAVVNADDPAGERL 252
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+A P ++++ ADVH + + + P G +I + LLG+HNI N+
Sbjct: 253 LAS-LPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNL 311
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE---------LIDEEQAFGVIVDYAHTPD 231
L +G PL I R + + V GR + L Q V+VDYAHTPD
Sbjct: 312 LLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPD 371
Query: 232 ALSRLLDSVRELAPR---RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
AL+R L ++R +A R++ V GC GE D GKRP M +IA +++D ++TSDNP +E
Sbjct: 372 ALARALTALRPVAQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSES 431
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P DI+D +LAG+ P G R + R +A+ + D++
Sbjct: 432 PQDIIDQILAGI-------------------PAGMRAAVQPDRALAIMQTLWSAAPDDVI 472
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREAL 378
++AGKGHETYQ G +K FDDR+ +R AL
Sbjct: 473 LLAGKGHETYQDIGGRKLPFDDRQWARLAL 502
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 6/183 (3%)
Query: 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDV 128
+A+ TN R+H +F T E + + + PE V D+P A +
Sbjct: 665 VALVTNAQREHQEFMHTVEAVAHENGAVIGAL--PEDGVAVYPGDEPYAAIWDKLAGARR 722
Query: 129 PVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGI 188
V+ F ++ DV+ + TQ + TP G E+ + G HN+ N LAA+A G+
Sbjct: 723 -VLRFGLQ-PGLDVYAERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGL 780
Query: 189 AVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVREL-APR 246
A GAPL + + AV GR + +I D Y PD+ +D + L APR
Sbjct: 781 AAGAPLHTCIAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPR 840
Query: 247 RII 249
++
Sbjct: 841 ALV 843
>gi|224536610|ref|ZP_03677149.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521701|gb|EEF90806.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
DSM 14838]
Length = 483
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/382 (35%), Positives = 202/382 (52%), Gaps = 43/382 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M +G + V ME SSH +
Sbjct: 129 FGYKVGLISTVCNYID-DQPIPTEHTTPDPITLNLLLGQMADSGCKYVFMEVSSHSIDQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ ++L + G+L E++ +GR
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGKILESHFEGMLLDFNNHELAVHFIGR 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + + + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSALQPVAGRFDAVRSPKGITAIVDYAHTPDALI 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWT-MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ MQ+ + + RR A++ A + + GD+++VA
Sbjct: 413 INDMLAGLDKEDMQKTISIAD------------------RREAIKTACLLAQPGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREE 373
GKGHE YQ K FDD+EE
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEE 476
>gi|303235595|ref|ZP_07322202.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
ligase [Prevotella disiens FB035-09AN]
gi|302484042|gb|EFL47030.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
ligase [Prevotella disiens FB035-09AN]
Length = 486
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/379 (37%), Positives = 193/379 (50%), Gaps = 30/379 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D + + TTPD + + L+AKM+ G E ME SSH +
Sbjct: 129 FGHKVGLLSTVCNYID-DKAVPASHTTPDPIELNILLAKMVEEGCEYAFMECSSHAIHQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YRNAK F + + + N DD N
Sbjct: 188 RIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKMFFDDL--GKDAFAITNADDKNG--M 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I N V T++ + + AD E + VN E+ +G+ N+ N+
Sbjct: 244 IMVQNCKATVKTYSTK-RAADFKAHLLECHFEGMYLEVNGK----EVGVQFIGKFNVSNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA + +G EDI+ + + V GR E I I+DYAHTPDAL +L ++
Sbjct: 299 LAVYGAAVMLGKKPEDILVALSALKNVNGRLEPITSLDGITAIIDYAHTPDALENVLLAI 358
Query: 241 RELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
E+ + IITV G G D+GKRPLM A KSD ILTSDNP NEDP I++DML
Sbjct: 359 HEVLEGKGGHIITVCGAGGNRDKGKRPLMALEAVKKSDNVILTSDNPRNEDPQAIINDML 418
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+ T ++ + N R+ A+R A M +GD+V++AGKGHET
Sbjct: 419 EGLDNTQKKKVLTIVN-----------------RKEAIRAACMMAHKGDVVLIAGKGHET 461
Query: 358 YQIEGDKKEFFDDREESRE 376
YQ K FDD E RE
Sbjct: 462 YQEINGVKHHFDDHEVVRE 480
>gi|336404500|ref|ZP_08585195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 1_1_30]
gi|335942297|gb|EGN04144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 1_1_30]
Length = 482
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/388 (34%), Positives = 204/388 (52%), Gaps = 43/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PKSAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + L F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LCDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G E+++ + + V GR + + Q IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGVTAIVDYAHTPDALI 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ L + R+ A+R A + E+GD+++VA
Sbjct: 413 INDMLAGLDAEDMKKTLSIAD------------------RKEAIRTACMLAEKGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHE YQ K FDD+E +E +
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEVLKEIFK 482
>gi|408374362|ref|ZP_11172050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Alcanivorax hongdengensis A-11-3]
gi|407765820|gb|EKF74269.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Alcanivorax hongdengensis A-11-3]
Length = 490
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 24/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G R ++ ++ + G+ + E+ TTPD + +Q +A++ G +AV ME SSH L G
Sbjct: 130 LGHRCALVGTLGLGLKGEEQ-ETGHTTPDPLTLQAGLARVRDAGADAVAMEVSSHALDQG 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R E AVF+NL+RDH+D+HG E Y AK+ LF+R P V+N DD A++
Sbjct: 189 RLGETLVRAAVFSNLSRDHLDYHGDMERYLAAKSALFTR---PGVQLAVINTDDNAASTL 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I + + V VT+ + A V ++ S Q+ + + ++ L G + NI
Sbjct: 246 IGRLDDGVRCVTYGSQ-AGATVRCREYHCSEEGLQITLMVGGEPVALTLPLFGHFTVSNI 304
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
+A + E++ + + VPGR E + + A VIVDYAHTPD L + L +
Sbjct: 305 MAVAGTLHGLNVRAEELGPALMALTPVPGRMEPVRQSGAATVIVDYAHTPDGLEKALQAC 364
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
RE R+ VVGC G+ D GKRP M +A +DV +LTSDNP +E P I+DDMLAGV
Sbjct: 365 REHFSGRLHCVVGCGGDRDSGKRPQMAAVAERLADVLVLTSDNPRSEAPQAIIDDMLAGV 424
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ R+ RRVA+ A+ GD+V++AGKGHETYQ
Sbjct: 425 -------------------SDPQRVHCQVERRVAINEAIQRAAPGDVVLLAGKGHETYQE 465
Query: 361 EGDKKEFFDDREESREALQ 379
+ DDRE +R+ALQ
Sbjct: 466 IAGVRHHSDDRELARQALQ 484
>gi|421503358|ref|ZP_15950307.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas mendocina DLHK]
gi|400345831|gb|EJO94192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas mendocina DLHK]
Length = 487
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/369 (35%), Positives = 202/369 (54%), Gaps = 25/369 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ HG + + TTPD V VQ +A + G AV ME SSHGL GR
Sbjct: 127 GERCGIVGTLGTGFHGALE-QGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLDQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ ++FD+AVFTNL+RDH+D+HG+ E Y AKAKLF+ P +V+N+DD +
Sbjct: 186 VAALEFDVAVFTNLSRDHLDYHGSMEAYGAAKAKLFAW---PNLRCRVINLDDAFGRE-L 241
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
AQ D ++ +++ + A ++ + + + + TP G + S LLGR N+ N+L
Sbjct: 242 AQQAHDSRLIGYSLSDASAFLYCSEAQFDDHGVRARLVTPRGEGVLRSNLLGRFNLSNLL 301
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
A V + + L++I++ + ++ GR + + V+VDYAHTPDAL ++L+++R
Sbjct: 302 AVVGALLGMDYGLDEILKVLPQLQGPAGRMQRLGGGDKPLVVVDYAHTPDALEKVLEAMR 361
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
R++ + GC G+ DRGKRPLM +A +DV +T DNP +EDP I+ D+ AG
Sbjct: 362 PHVQGRLLCLFGCGGDRDRGKRPLMAAVAERLADVVWVTDDNPRSEDPAQIVADIRAGFC 421
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ-I 360
Q +G D A+ +A E D++V+AGKGHE YQ I
Sbjct: 422 APEQVQFIHGRGD-------------------AIARLIAQAEAADVLVLAGKGHEDYQEI 462
Query: 361 EGDKKEFFD 369
G + F D
Sbjct: 463 MGVRHPFSD 471
>gi|429740182|ref|ZP_19273887.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella saccharolytica F0055]
gi|429154121|gb|EKX96872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella saccharolytica F0055]
Length = 484
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/376 (34%), Positives = 198/376 (52%), Gaps = 33/376 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D ++ + TTPD V + L+ +M+ G E V ME SSH +A
Sbjct: 129 FGYKCGLISTVCNYIE-DEEIPADHTTPDPVELNFLLHRMVEAGCEYVFMECSSHAIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YR+AK F + P+ + N DD N
Sbjct: 188 RIGGLTFTGGIFTNLTRDHLDYHKTFENYRDAKKAFFDGL--PKTAFAITNADDKNGMVM 245
Query: 121 IAQGNPDVPVV-TFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + T M + +A + F+ E EI +G+ N+ N
Sbjct: 246 VQNTKATIKTYSTRVMADFRAKILECHFDGMYLEIDG--------NEIGVQFIGKFNVSN 297
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA + +G EDI+ + + +V GR E I + + ++DYAHTPDAL +L++
Sbjct: 298 LLAVYSTARMLGKKTEDILLVMSTLQSVNGRLEPIRSPEGYTAVIDYAHTPDALENVLNA 357
Query: 240 VREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ E+ ++ITV G G D+GKRPLM + A +SD I+TSDNP EDP DI++DML
Sbjct: 358 IHEVLNGKGQVITVCGAGGNRDKGKRPLMAQEAVKQSDKVIITSDNPRFEDPQDIINDML 417
Query: 298 AGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG+ M++ + + R+ A+R A M ++GD++++AGKGHE
Sbjct: 418 AGLNAQQMKKVISIVD------------------RKEAIRTACMMAQKGDVILIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDRE 372
YQ K FDD+E
Sbjct: 460 DYQEIKGVKHHFDDKE 475
>gi|397689321|ref|YP_006526575.1| UDP-N-acetylmuramyl tripeptide synthase [Melioribacter roseus P3M]
gi|395810813|gb|AFN73562.1| UDP-N-acetylmuramyl tripeptide synthase [Melioribacter roseus P3M]
Length = 489
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/383 (34%), Positives = 209/383 (54%), Gaps = 32/383 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ YI GD +L++ TTP + + L+ +M+ G ME SSH L L R
Sbjct: 136 GRKAGLIGTIANYI-GDEELKTMLTTPQSHEINFLLDRMVKAGCRYCSMEVSSHALDLHR 194
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+DFD A+FTN+T DHMD+H T + Y AK LF + PE V+N DDPNA +
Sbjct: 195 ADYLDFDYAIFTNITSDHMDYHLTFDNYLKAKKILFDML--PENAAAVINADDPNANELV 252
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
VV + ++KAD + SL T +V + ++ + L+G N YN
Sbjct: 253 R--GTKAKVVKYGA-SEKADFRIKEITYSLEGTDFVVVYKNKEYKLHTKLIGHFNAYNAT 309
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA AVG+ ++++R I+ VPGR E++ + +I+DYAHT D+L + L +VR
Sbjct: 310 AAFAVGLLESIDADEVIRAIKNSPQVPGRFEVVSGGEK-KIIIDYAHTADSLMQALKAVR 368
Query: 242 ELA--PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+ R + TV GC G+ DR KRP+M +IA++ SD +TSDNP E+P I+D+++ G
Sbjct: 369 NIVGNSRPVYTVFGCGGDRDRSKRPIMGRIASEMSDKVFVTSDNPRTENPSAIIDEIVQG 428
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ + D Y + N R A++ A+ M E+ ++++AGKGHE YQ
Sbjct: 429 I-----------KKDNYTVIEN---------REEAIKKAIQMSEKDAVILIAGKGHENYQ 468
Query: 360 IEGDKKEFFDDREESREALQYVD 382
+ F D+E A++Y++
Sbjct: 469 EINGVRTHFSDKE---TAVKYLN 488
>gi|340622891|ref|YP_004741343.1| UDP-MurNAc-tripeptide synthetase [Capnocytophaga canimorsus Cc5]
gi|339903157|gb|AEK24236.1| UDP-MurNAc-tripeptide synthetase [Capnocytophaga canimorsus Cc5]
Length = 483
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/388 (34%), Positives = 209/388 (53%), Gaps = 45/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G++S+++ Y+ + K ++ TTPD + + + M+ G E ME SSHG+
Sbjct: 129 VGYKVGLISTIAIYVD-EQKYDTKNTTPDILTLNKYLKMMVDAGCEYCFMEVSSHGVEQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F VFTNLT DH+D+H T YR+AK K F ++ P+ + NIDD N +
Sbjct: 188 RIEGLQFAGGVFTNLTHDHLDYHQTFANYRDAKKKFFDQL--PKTAFALTNIDDKNGSVM 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFE-LSLFETQVLVNTPHGIL------EISSGLLG 173
++N KA + ++ + Q+L N G++ E+ + L+G
Sbjct: 246 --------------LQNTKAQKKSYALKTMADYRLQILENQFSGLVLKIDGQEVWTNLIG 291
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
+ N YN+LA AV + + + + +V GR + + IVDYAHTPDAL
Sbjct: 292 QFNAYNLLAVYAVADLLRIEKIQNLTALSTLQSVGGRFQYFVSKDKITAIVDYAHTPDAL 351
Query: 234 SRLLDSVRELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
+LD++ + + ++ITVVGC G D+ KRP+M I+T +S I TSDNP +EDP
Sbjct: 352 QNVLDTINNIRTKNEQLITVVGCGGNRDKSKRPVMADISTKESTRVIFTSDNPRDEDPQT 411
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
ILD+M AGV + + Y K+ + + D RR A++ A + GD++++A
Sbjct: 412 ILDEMEAGV--SAEHYKKF--------------VTIAD-RRQAIKTACQFAQSGDIILIA 454
Query: 352 GKGHETYQ-IEGDKKEFFDDREESREAL 378
GKGHETYQ I+G++ FDD EE ++ L
Sbjct: 455 GKGHETYQEIKGERTH-FDDMEEVKKIL 481
>gi|427825300|ref|ZP_18992362.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica Bbr77]
gi|410590565|emb|CCN05656.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica Bbr77]
Length = 945
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 200/390 (51%), Gaps = 35/390 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG G + ++ + L TTPD + + +A+M G AV +EASS G+ G
Sbjct: 136 MGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQG 195
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + +A FTNLTRDH+D+HGT + Y AKA LF P+ VVN DDP
Sbjct: 196 RLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQW---PDLQAAVVNADDPAGERL 252
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+A P ++++ ADVH + + + P G +I + LLG+HNI N+
Sbjct: 253 LAS-LPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNL 311
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE---------LIDEEQAFGVIVDYAHTPD 231
L +G PL I R + + V GR + L Q V+VDYAHTPD
Sbjct: 312 LLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPD 371
Query: 232 ALSRLLDSVRELA---PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
AL+R L ++R +A R++ V GC GE D GKRP M +IA +++D ++TSDNP +E
Sbjct: 372 ALARALTALRPVAHARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSES 431
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P DI+D +LAG+ P G R + R +A+ + D++
Sbjct: 432 PQDIIDQILAGI-------------------PAGMRAAVQPDRALAIMQTLWSAAPDDVI 472
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREAL 378
++AGKGHETYQ G +K FDDR+ +R AL
Sbjct: 473 LLAGKGHETYQDIGGRKLPFDDRQWARLAL 502
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 6/183 (3%)
Query: 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDV 128
+A+ TN R+H +F T E + + + PE V D+P A +
Sbjct: 665 VALVTNAQREHQEFMHTVEAVAHENGAVIGAL--PEDGVAVYPGDEPYAAIWDKLAGARR 722
Query: 129 PVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGI 188
V+ F ++ DV+ + TQ V TP G E+ + G HN+ N LAA+A G+
Sbjct: 723 -VLRFGLQ-PGLDVYAERVVTQAHGTQCGVVTPAGSAELDLPVPGLHNLRNALAAIACGL 780
Query: 189 AVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVREL-APR 246
A GAPL + + AV GR + +I D Y PD+ +D + L APR
Sbjct: 781 AAGAPLHTCIAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPR 840
Query: 247 RII 249
++
Sbjct: 841 ALV 843
>gi|329118763|ref|ZP_08247461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Neisseria bacilliformis ATCC BAA-1200]
gi|327465110|gb|EGF11397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Neisseria bacilliformis ATCC BAA-1200]
Length = 496
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 199/383 (51%), Gaps = 31/383 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G +T ++ +V G + ++ TTP V VQ+L+ + G A ME SSHGL
Sbjct: 136 LGDKTAIIGTVGNGFWGALE-DTTHTTPAPVEVQSLLHRFRKQGATAAAMEVSSHGLDQA 194
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + V F AVFTNLTRDH+D+HGT E Y K++LF V+N DDP
Sbjct: 195 RVNGVPFQTAVFTNLTRDHLDYHGTMEAYGAIKSRLFYWR---GLKHAVINSDDPYGAEL 251
Query: 121 IAQ---GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
I + PD+ V ++ ++AD+ F + +V ++TP G + + LLGR N
Sbjct: 252 IGRLKADRPDLAVYSYGF-GEQADIRITGFAAASDGMEVALDTPWGKGSVKTRLLGRFNA 310
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+ A V V A G PL+ ++ +E++ GR + I E V+VDYAHTPDAL + L
Sbjct: 311 QNLAACVGVLCADGHPLDKVLAALEKIRPATGRMDCIIESGKPLVVVDYAHTPDALEKAL 370
Query: 238 DSVRELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+++E+ P+ + V GC G DRGKRPLM A +D ++TSDNP E+P DI+ D
Sbjct: 371 ATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPADIIAD 430
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+L V P P + R+ A+ AV D++++AGKGH
Sbjct: 431 ILPAV-----------------PAPE----CVEADRKAAIGFAVKNAASDDIILIAGKGH 469
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
ETYQ K F D E ++ AL
Sbjct: 470 ETYQDVAGVKHHFSDFETAQAAL 492
>gi|408370291|ref|ZP_11168069.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Galbibacter sp. ck-I2-15]
gi|407744369|gb|EKF55938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Galbibacter sp. ck-I2-15]
Length = 493
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 210/397 (52%), Gaps = 43/397 (10%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG+LS+V + G ++ + TTPD + + + M G E ME SSHG+ R
Sbjct: 131 GYKTGLLSTVKVMV-GQDRHPATHTTPDPMAINGYLKSMNLAGVEYCFMEVSSHGIDQQR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ ++F VF+NLT DH+D+H + YR+ K + F + + ++N+DD N +F+
Sbjct: 190 TAGLEFVAGVFSNLTHDHLDYHNSFAAYRDVKKRFFDEL--SPKAFALINVDDKNG-AFM 246
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGRH 175
Q N VT+A++ AD ++ Q+L N HG+L E+ S L+G
Sbjct: 247 LQ-NSKARKVTYALKT-YAD----------YKAQILENQFHGLLLKIDNNEVWSKLIGNF 294
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N YN+LA AV I +G ++++ + E+++V GR + + IVDYAHTPDAL
Sbjct: 295 NAYNLLAVYAVAIELGLEKIEVLQYLSELESVGGRFQYFISQSEITAIVDYAHTPDALKN 354
Query: 236 LLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L+++ + +ITVVGC G+ D KRPLM IA S I TSDNP EDP IL
Sbjct: 355 VLETINTIRTGNESLITVVGCGGDRDATKRPLMANIAASLSSKAIFTSDNPRTEDPEKIL 414
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
+M AGV P N L RR A+R A + ++ D++++AGK
Sbjct: 415 QEMEAGVE---------------PQFYNKTLTILD--RRQAIRTACQLAQKNDIILIAGK 457
Query: 354 GHETYQ-IEGDKKEFFDDREESREALQYVDELHQAGI 389
GHE YQ I G ++E FDD + E L +++ Q +
Sbjct: 458 GHENYQEINGVRRE-FDDMKIVTELLNNMNQHSQGNV 493
>gi|46445948|ref|YP_007313.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Candidatus Protochlamydia amoebophila UWE25]
gi|46399589|emb|CAF23038.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,
6-diaminopimelate ligase [Candidatus Protochlamydia
amoebophila UWE25]
Length = 492
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/377 (33%), Positives = 204/377 (54%), Gaps = 28/377 (7%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
G++ ++ Y + G ++ ++ RTTPD + ++ +M +GT++ VME +SH L R
Sbjct: 132 CGLIGTIEYIV-GSHRYQATRTTPDVIENHKMLYEMSLSGTKSAVMEVTSHALIQKRVEY 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD-PERHRK----VVNIDDPNATS 119
+DFD+AVF+NLT DH+D+H T E Y AK LF + + P + R +VNIDDP
Sbjct: 191 IDFDVAVFSNLTLDHLDYHLTMENYCAAKNCLFEGLGEQPTKKRNEKWAIVNIDDPWCEQ 250
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ +T+ ++ K AD+ +LS T + + +E LLGR NIYN
Sbjct: 251 IVK--GCQAHRLTYGID-KPADLQASHIKLSSQGTSINLTYQGQTIECFWPLLGRFNIYN 307
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
LAA+ V + PL++IV + + V GR E + + +D+AHT DALS +L +
Sbjct: 308 CLAAIGVLLTQNIPLKEIVEKMACIPNVKGRLEKVLNNLELDIYIDFAHTDDALSNVLKT 367
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+ E+ R++T+ GC G+ D KRP M + SD++I+TSDNP +E+P+ I +++ G
Sbjct: 368 LSEIKKGRLLTIFGCGGDRDPSKRPKMAIASEQYSDLSIVTSDNPRSENPISICQEIVTG 427
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
N + + RR A++ A+ + GDM+++AGKGHETYQ
Sbjct: 428 -------------------FVNPNSFIVEIDRRAAIQKAIEIASPGDMILIAGKGHETYQ 468
Query: 360 IEGDKKEFFDDREESRE 376
I + FDD + + E
Sbjct: 469 ILSHQIIEFDDAKVAAE 485
>gi|295086280|emb|CBK67803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
[Bacteroides xylanisolvens XB1A]
Length = 482
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/388 (34%), Positives = 204/388 (52%), Gaps = 43/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D L + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEPLPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + + +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PKSAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + L F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LCDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G E+++ + + V GR + + Q IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGVTAIVDYAHTPDALI 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ L + R+ A+R A + E+GD+++VA
Sbjct: 413 INDMLAGLDAEDMKKTLSIAD------------------RKEAIRTACMLAEKGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHE YQ K FDD+E +E +
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEVLKEIFK 482
>gi|119358490|ref|YP_913134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlorobium phaeobacteroides DSM 266]
gi|166224773|sp|A1BJY3.1|MURE_CHLPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|119355839|gb|ABL66710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlorobium phaeobacteroides DSM 266]
Length = 512
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 207/386 (53%), Gaps = 32/386 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+RTG + + + G+ ++ RTTP+A ++ L +ML +G VME SSH L L R
Sbjct: 133 GIRTGYIGT-NLCTFGEQQIPLDRTTPEAHILHALFRRMLDSGCSVAVMEVSSHALVLQR 191
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ F AVFTNL+ +H+DFH T +EY AK +LF ++ P+ V+N DDP A +
Sbjct: 192 VYGITFHAAVFTNLSMEHLDFHKTMQEYAGAKRQLFEQL-SPQGF-AVINSDDPRAEEMV 249
Query: 122 AQGNPDVP-VVTFAMENKKADVHPLKFELSLFETQVLVNT-----PHGILEISSGLLGRH 175
++ NP+ T + A +F L + + T P IS+ L G++
Sbjct: 250 SKINPEKRFCCTLDQTGRVAGDASRRFSAELIDQSIASATIRLCFPDAQQTISTVLPGQY 309
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE-LIDEEQAFGVIVDYAHTPDALS 234
N+ N+L A AVG +G + ++ + V GR E ++D + V VDYAHTPDAL
Sbjct: 310 NVMNLLQAAAVGCGMGLGSPVVAAALDALPGVAGRMERIMDRRRKEFVFVDYAHTPDALF 369
Query: 235 RLLDSVRELA--PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+ L ++ L R+I V GC G DR KRP M +IA + +D+ ILTSDNP +EDP I
Sbjct: 370 KALSTLNALKSPASRLIVVFGCGGNRDRLKRPEMGRIAVENADLVILTSDNPRDEDPEMI 429
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+D++ G+ + N R+ R A+R AVA+ + GD+++VAG
Sbjct: 430 IDEIEKGI-----------------RVKNHKRI---TDRAQAIRTAVALLQPGDVLLVAG 469
Query: 353 KGHETYQIEGDKKEFFDDREESREAL 378
KGHE YQ +K FF D+E R AL
Sbjct: 470 KGHEQYQETAGEKSFFSDQETLRNAL 495
>gi|294674968|ref|YP_003575584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella ruminicola 23]
gi|294472220|gb|ADE81609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella ruminicola 23]
Length = 483
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 202/379 (53%), Gaps = 31/379 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D + + TTPD + + L+A+M+ G E ME SSH +A
Sbjct: 129 FGHKCGLLSTVCNYIE-DEAIPADHTTPDPIELNRLLAQMVDAGCEYAFMECSSHAIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YR+AK F + + + N DD N
Sbjct: 188 RIGGLKFAGGLFTNLTRDHLDYHKTFENYRDAKKAFFDGL--EKDAFAITNADDKNGMVM 245
Query: 121 IAQGNPDVPVV-TFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ +V T M + KA + FE + +N E+ +G+ N+ N
Sbjct: 246 VQNCKANVKTYSTRTMADFKAKIIECHFEGMYLD----INGK----EVGVQFIGKFNVSN 297
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA + +G EDI+ + + +V GR E I + + IVDYAHTPDAL +L++
Sbjct: 298 LLAVYGAAVMLGKKPEDILLIMSTLKSVNGRLEPIHSPEGYTAIVDYAHTPDALENVLNA 357
Query: 240 VREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ E+ ++ITV G G D+GKRP+M + A +SD I+TSDNP E+P DI++DML
Sbjct: 358 IHEVLNGKGKVITVCGAGGNRDKGKRPIMAQEAVKQSDKVIITSDNPRFEEPQDIINDML 417
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AG+ Q+ +K ++ RR A+R A + E+GD++++AGKGHE
Sbjct: 418 AGLD---QKQMK--------------KVVSIVDRREAIRTACMLAEKGDVILIAGKGHED 460
Query: 358 YQIEGDKKEFFDDREESRE 376
YQ K FDD+E +E
Sbjct: 461 YQEIKGVKHHFDDKEVVKE 479
>gi|427818856|ref|ZP_18985919.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica D445]
gi|410569856|emb|CCN17977.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica D445]
Length = 945
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 200/390 (51%), Gaps = 35/390 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG G + ++ + L TTPD + + +A+M G AV +EASS G+ G
Sbjct: 136 MGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQG 195
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + +A FTNLTRDH+D+HGT + Y AKA LF P+ VVN DDP
Sbjct: 196 RLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQW---PDLQAAVVNADDPAGERL 252
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+A P ++++ ADVH + + + P G +I + LLG+HNI N+
Sbjct: 253 LAS-LPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNL 311
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE---------LIDEEQAFGVIVDYAHTPD 231
L +G PL I R + + V GR + L Q V+VDYAHTPD
Sbjct: 312 LLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPD 371
Query: 232 ALSRLLDSVRELA---PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
AL+R L ++R +A R++ V GC GE D GKRP M +IA +++D ++TSDNP +E
Sbjct: 372 ALARALTALRPVAHARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSES 431
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P DI+D +LAG+ P G R + R +A+ + D++
Sbjct: 432 PQDIIDQILAGI-------------------PAGMRAAVQPDRALAIMQTLWSAAPDDVI 472
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREAL 378
++AGKGHETYQ G +K FDDR+ +R AL
Sbjct: 473 LLAGKGHETYQDIGGRKLPFDDRQWARLAL 502
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 6/183 (3%)
Query: 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDV 128
+A+ TN R+H +F T E + + + PE V D+P A +
Sbjct: 665 VALVTNAQREHQEFMHTVEAVAHENGAVIGAL--PEDGVAVYPGDEPYAAIWDKLAGARR 722
Query: 129 PVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGI 188
V+ F ++ DV+ + TQ V TP G E+ + G HN+ N LAA+A G+
Sbjct: 723 -VLRFGLQ-PGLDVYAERVVTQAHGTQCGVVTPAGSAELDLPVPGLHNLRNALAAIACGL 780
Query: 189 AVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVREL-APR 246
A GAPL + + AV GR + +I D Y PD+ +D + L APR
Sbjct: 781 AAGAPLHTCIAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPR 840
Query: 247 RII 249
++
Sbjct: 841 ALV 843
>gi|313886000|ref|ZP_07819738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Porphyromonas asaccharolytica PR426713P-I]
gi|312924530|gb|EFR35301.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Porphyromonas asaccharolytica PR426713P-I]
Length = 499
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 204/379 (53%), Gaps = 31/379 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G+R + S+V I GD + + TTPDA+ + +M M+ G + ME SSH L
Sbjct: 141 LGMRAALFSTVCIRI-GDKEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQ 199
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +A+FTNLTRDH+D+HGT + Y AK LF + P+ + +VN DD N +
Sbjct: 200 RVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLLFDHL-SPDAY-ALVNADDRNGSVM 257
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N + T+AM + + L + T +L N E+ L+G +N YN+
Sbjct: 258 VQ--NCAAHLHTYAMRSHADYMAQLLGQYVDGSTLLLDNE-----EVEIKLVGSYNAYNV 310
Query: 181 LAAVAVGIAVGAPLED--IVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
A V + L+ I+RGI ++ V GR +L+ + + V+VDYAHTPDAL LL
Sbjct: 311 TAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLLASPRGYHVVVDYAHTPDALENLLK 370
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+V EL ++ VVG G+ D GKRP M +IA + D LTSDNP +EDP I+D ML
Sbjct: 371 TVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCDHLYLTSDNPRSEDPQTIIDQMLE 430
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ P ++ + RR A+ A A + GD+VV+AGKGHETY
Sbjct: 431 GI-----------------PQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKGHETY 473
Query: 359 Q-IEGDKKEFFDDREESRE 376
Q IEG + FDD+E RE
Sbjct: 474 QEIEG-VRHHFDDKEVVRE 491
>gi|77166317|ref|YP_344842.1| UDP-N-acetylmuramyl tripeptide synthetase [Nitrosococcus oceani
ATCC 19707]
gi|254435084|ref|ZP_05048591.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus
oceani AFC27]
gi|76884631|gb|ABA59312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Nitrosococcus oceani ATCC 19707]
gi|207088195|gb|EDZ65467.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus
oceani AFC27]
Length = 519
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 213/381 (55%), Gaps = 26/381 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ G++ ++ + G + SP TTPDAV VQ +A M V+E SSH L GR
Sbjct: 155 GIPCGLVGTLGKGLVGTLQ-PSPLTTPDAVTVQEQLAAMAAARIRYTVLEVSSHALEQGR 213
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ V F+ A+FTNL+R+H+D+HG Y AK +LF++ PE V+NIDD +F+
Sbjct: 214 VNGVVFNTAIFTNLSREHLDYHGDMVRYEAAKFRLFNQ---PELRHAVINIDDVAGRAFL 270
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
A +V +++ + N +A++ + + + V + G +++ LLGR N YN+L
Sbjct: 271 ANLPSEVAAISYGITNPQANLWASELHCDRYGIAMTVQSAWGEGQLTCSLLGRFNAYNLL 330
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG-VIVDYAHTPDALSRLLDSV 240
AA+ + VG P + ++ + +V AV GR E E++ ++VDYAHTPDAL ++L S+
Sbjct: 331 AALGGLLVVGMPFTEALQRLSQVRAVAGRMEAFGEKEGEPLLVVDYAHTPDALEQVLCSL 390
Query: 241 R-ELAP-RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ L P R+ V GC G+ DRGKRPLM A +D ILT DNP +EDP+ I+ D+L+
Sbjct: 391 QMHLGPGGRLWCVFGCGGDRDRGKRPLMGAAAERLADFVILTDDNPRDEDPIQIIIDILS 450
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ N R++ R A+ A + D+V++AGKGHE Y
Sbjct: 451 GI-------------------HNPDRVYQFRSRSEAIIRATQLAGPEDIVLIAGKGHEEY 491
Query: 359 QIEGDKKEFFDDREESREALQ 379
Q G ++ F DRE+ +EAL+
Sbjct: 492 QQIGAEQRPFSDREQVQEALR 512
>gi|339493057|ref|YP_004713350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338800429|gb|AEJ04261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 487
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 215/380 (56%), Gaps = 28/380 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G G++ ++ +G +LE R TTPDA+ VQ +A++ G AV ME SSHGL
Sbjct: 126 LGEPCGIIGTLGTGFYG--QLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + ++FD+AVFTNL+RDH+D+HGT E Y AKA+LF P +V+N+DD +
Sbjct: 184 GRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFGV---PGLSCRVINLDDGFGRA 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + ++++++E+ A ++ + +L + TP G + S LLGR N+ N
Sbjct: 241 LAGE-ERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + + PL++I+ + E++ GR + + V+VDYAHTPDAL ++L +
Sbjct: 300 VLAAVGALLGMDYPLDEILAVLPELEGPAGRMQRLGGGDRPLVVVDYAHTPDALEKVLTA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM ++A +D ++T DNP NE P ILDD+ +G
Sbjct: 360 LRPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPERILDDVRSG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ E + + + R A+ +A D+VV+AGKGHE YQ
Sbjct: 420 --FVNPEAVTFVQG-----------------RAQAIARLIAAANASDVVVLAGKGHEDYQ 460
Query: 360 -IEGDKKEFFDDREESREAL 378
I G++ F D EE+ AL
Sbjct: 461 DIRGERLP-FSDIEEACTAL 479
>gi|386019666|ref|YP_005937690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri DSM 4166]
gi|327479638|gb|AEA82948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri DSM 4166]
Length = 487
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 215/380 (56%), Gaps = 28/380 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G G++ ++ +G +LE R TTPDA+ VQ +A++ G AV ME SSHGL
Sbjct: 126 LGEPCGIIGTLGTGFYG--QLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + ++FD+AVFTNL+RDH+D+HGT E Y AKA+LF P +V+N+DD +
Sbjct: 184 GRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFGV---PGLSCRVINLDDGFGRA 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + ++++++E+ A ++ + +L + TP G + S LLGR N+ N
Sbjct: 241 LAGE-ERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + + PL++I+ + E++ GR + + V+VDYAHTPDAL ++L +
Sbjct: 300 VLAAVGALLGMDYPLDEILAVLPELEGPAGRMQRLGGGDRPLVVVDYAHTPDALEKVLTA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM ++A +D ++T DNP NE P ILDD+ +G
Sbjct: 360 LRPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPERILDDVRSG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ E + + + R A+ +A D+VV+AGKGHE YQ
Sbjct: 420 --FVNPEAVTFVQG-----------------RAQAIARLIAAANASDVVVLAGKGHEDYQ 460
Query: 360 -IEGDKKEFFDDREESREAL 378
I G++ F D EE+ AL
Sbjct: 461 EIRGERLP-FSDIEEACTAL 479
>gi|332299373|ref|YP_004441294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Porphyromonas asaccharolytica DSM 20707]
gi|332176436|gb|AEE12126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Porphyromonas asaccharolytica DSM 20707]
Length = 499
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 204/379 (53%), Gaps = 31/379 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G+R + S+V I GD + + TTPDA+ + +M M+ G + ME SSH L
Sbjct: 141 LGMRAALFSTVCIRI-GDKEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQ 199
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +A+FTNLTRDH+D+HGT + Y AK LF + P+ + +VN DD N +
Sbjct: 200 RVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLLFDHLT-PDAY-ALVNADDRNGSVM 257
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N + T+AM + + L + T +L N E+ L+G +N YN+
Sbjct: 258 VQ--NCAAHLHTYAMRSHADYMAQLLGQYVDGSTLLLDNE-----EVEIKLVGSYNAYNV 310
Query: 181 LAAVAVGIAVGAPLED--IVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
A V + L+ I+RGI ++ V GR +L+ + + V+VDYAHTPDAL LL
Sbjct: 311 TAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLLASPRGYHVVVDYAHTPDALENLLK 370
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+V EL ++ VVG G+ D GKRP M +IA + D LTSDNP +EDP I+D ML
Sbjct: 371 TVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCDHLYLTSDNPRSEDPQTIIDQMLE 430
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ P ++ + RR A+ A A + GD+VV+AGKGHETY
Sbjct: 431 GI-----------------PQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKGHETY 473
Query: 359 Q-IEGDKKEFFDDREESRE 376
Q IEG + FDD+E RE
Sbjct: 474 QEIEG-VRHHFDDKEVVRE 491
>gi|311030017|ref|ZP_07708107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Bacillus sp. m3-13]
Length = 496
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 132/380 (34%), Positives = 214/380 (56%), Gaps = 26/380 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG+ ++ I G+ K ES TT D + +Q ++ M+ G VVME SSHGL LGR
Sbjct: 130 GYKTGLSGTIEIDIDGE-KFESKNTTSDVLTMQRMLKDMVEAGVTDVVMEVSSHGLVLGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK--VVNIDDPNATS 119
+ V+F VFTNLT+DH+DFHGT E Y+NAK LF+++ R K ++N+DD
Sbjct: 189 LAGVEFQNGVFTNLTQDHLDFHGTMENYKNAKGLLFAQLGQDMRKDKAAILNVDDAATKD 248
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
++ ++T+ ++N+ AD + + +T ++ T G E+ +G N+YN
Sbjct: 249 YVQM--TGARIITYGIKNE-ADFKAREIQFFENKTSFVLETNFGEFELEIPFVGEFNVYN 305
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
IL+ + V G P E I+ + E GR + ++ VI+DYAHT DA+ + LDS
Sbjct: 306 ILSVICVLWDKGMPFERILNHLRETTPPSGRMQTLETGDKRNVIIDYAHTEDAIGKALDS 365
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R + +II+++G G D+ KRP M +IAT+KS+ I T+DNP++E +I+ M G
Sbjct: 366 IRMFSKHKIISIIGTGGGRDKDKRPKMGRIATEKSEYVIFTTDNPLDEPGEEIVQGMAEG 425
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
++ + +P+ R A+ AV + EGD++++AGKGHE YQ
Sbjct: 426 -----------AVHENFECIPD---------REQAIIRAVEIAGEGDVILIAGKGHENYQ 465
Query: 360 IEGDKKEFFDDREESREALQ 379
+ G++ FD++E + +A++
Sbjct: 466 LIGNESVPFDEKEITLKAVK 485
>gi|149377267|ref|ZP_01895014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Marinobacter algicola DG893]
gi|149358455|gb|EDM46930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Marinobacter algicola DG893]
Length = 494
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 199/377 (52%), Gaps = 23/377 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ Y + G + E TTPD V V +++K++ G A ME SSH L GR
Sbjct: 134 GTPCGVIGTLGYGMPGALQ-EGAHTTPDVVQVNRVLSKIIAQGGRAAAMEVSSHALEQGR 192
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ AVFTNLTRDH+D+HG+ + Y AKA+LF R E H V+N DDP
Sbjct: 193 VDNLTMTGAVFTNLTRDHLDYHGSMDAYGAAKARLFHR---EELHFAVINFDDPFGRQLY 249
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ + V +++ + ++ +F S+ V+ G +S+ +LG N+ NIL
Sbjct: 250 EKLDGKCDRVRYSLHEAQTELWLTEFAPSIDGFSASVDGLWGRFNVSARVLGSFNVSNIL 309
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA+A +++G P+E + + +E + PGR E V+VDYAHTPDAL+ L ++R
Sbjct: 310 AAMASVLSLGVPVERVQQAVERLSPPPGRLEPFAGSNDVRVVVDYAHTPDALNSALAALR 369
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
R+ V GC G+ D GKRP M + A +DV I+T DNP +EDP I D++AG
Sbjct: 370 PHVGGRLFCVFGCGGDRDTGKRPEMAREAERGADVVIVTDDNPRSEDPDAITSDIVAGFE 429
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
Q + +HD R A+R A+ GD+V+VAGKGHE +Q
Sbjct: 430 HPEQIAV------------------IHD-RAEAIRQAIHSAVAGDIVLVAGKGHEAWQEV 470
Query: 362 GDKKEFFDDREESREAL 378
++ F D E+ R AL
Sbjct: 471 AGQRFPFSDAEQVRHAL 487
>gi|374855639|dbj|BAL58494.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured candidate
division OP1 bacterium]
Length = 470
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 133/364 (36%), Positives = 203/364 (55%), Gaps = 24/364 (6%)
Query: 9 SSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFD 68
+++S +H +SP TTP AV +Q + + G + V+E S+H L+ R +DF+
Sbjct: 123 AALSTTVHNALAYDSPYTTPGAVEIQRRAWEAVQAGRKHFVLEVSAHALSQERVHGIDFN 182
Query: 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDV 128
+A+FTNLT DH+D++ T EEY AK KLF + PE R ++N DDP+A +F+
Sbjct: 183 VAIFTNLTHDHLDYYRTMEEYLRAKLKLFENL-RPE-ARAIINGDDPSAPAFLQATRAR- 239
Query: 129 PVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGI 188
V T+ + ++ D+ + ELS ++ TP G + I + L G IYNILAA+ VGI
Sbjct: 240 -VWTYGLSSRH-DIWADQIELSPEGSRFTARTPAGAVPIETSLPGDFYIYNILAAIGVGI 297
Query: 189 AVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRI 248
L+ I IE V + GRCE + +D+AH+PD+L ++L +++ P R+
Sbjct: 298 ERRLALDVIKSRIEPVRQIEGRCERYCTRDGVFIWIDFAHSPDSLEKMLRTLKHFYP-RV 356
Query: 249 ITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYL 308
I+V GC GESD KRP+M +I+ +D TI+TSDNP EDP +I + +G+
Sbjct: 357 ISVFGCGGESDPYKRPIMGEISGRLADYTIITSDNPKGEDPQEITRQIESGI-------- 408
Query: 309 KYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFF 368
PL + + + R A+ A+ + GD V++AGKGHE QI D++ F
Sbjct: 409 --------RPLGVSYEVIVD--RPSAILRALELARPGDCVLIAGKGHERTQIFSDREIEF 458
Query: 369 DDRE 372
+DRE
Sbjct: 459 NDRE 462
>gi|152985436|ref|YP_001350325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas aeruginosa PA7]
gi|150960594|gb|ABR82619.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Pseudomonas aeruginosa PA7]
Length = 487
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/379 (36%), Positives = 203/379 (53%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ +G LES R TTPD + VQ +A + G AV ME SSHGL
Sbjct: 126 LGERCGIVGTLGTGFYG--ALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FDIAVFTNL+RDH+D+HG+ E Y AKAKLF+ P +VVN+DD
Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAW---PGLRCRVVNLDDDFGRR 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ ++T+++ + A ++ + + + TPHG + S LLGR N+ N
Sbjct: 241 LAGE-EQYSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + +G PL DI+R + ++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 300 LLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDALEKVLEA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM IA +D ++T DNP E I+ D+ G
Sbjct: 360 LRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ D LP+ H I AV D+V++AGKGHE YQ
Sbjct: 420 ----------FAAADKVTFLPSRGEAIAHLIASAAVD---------DVVLLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREAL 378
+ F D E++ AL
Sbjct: 461 EIDGVRHPFSDIEQAERAL 479
>gi|160891416|ref|ZP_02072419.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492]
gi|156858823|gb|EDO52254.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides uniformis ATCC 8492]
Length = 462
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 203/381 (53%), Gaps = 43/381 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M +G + ME SSH +A
Sbjct: 109 FGYKVGLVSTVCNYID-DQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQK 167
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 168 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEL--PKGAFSLTNLDDKNG--L 223
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 224 VMTQNTRSKVYTYSLRS-----------LSDFKGKVLESHFEGMLLDFNNHELAVRFIGK 272
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N YN+LA + +G ED++ + + V GR + I + + IVDYAHTPDAL
Sbjct: 273 FNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAIRSPKGYTAIVDYAHTPDALV 332
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K + SD I+TSDNP E+P DI
Sbjct: 333 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDI 392
Query: 293 LDDMLAGVGW-TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ MQ+ + + RR A++ A + + GD+++VA
Sbjct: 393 INDMLAGLDKDDMQKTISITD------------------RREAIKTACMLAQPGDVILVA 434
Query: 352 GKGHETYQIEGDKKEFFDDRE 372
GKGHE YQ K FDD+E
Sbjct: 435 GKGHENYQEIKGVKHHFDDKE 455
>gi|289578678|ref|YP_003477305.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
italicus Ab9]
gi|289528391|gb|ADD02743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
italicus Ab9]
Length = 483
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 138/375 (36%), Positives = 209/375 (55%), Gaps = 27/375 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I GD + S TTP+++ +Q L + M++ G + VVME SSH LAL R +
Sbjct: 130 KVGLVGTIQNMI-GDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALKRVN 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E +FDIAVFTNL++DH+DFH EEY K+KLF + V+NIDD ++ I
Sbjct: 189 ECEFDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFKMA----KRASVINIDDKYSSMMIES 244
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
V+T+ +E+ A V SL + V EIS + G ++YN LAA
Sbjct: 245 SKA--KVLTYGIED-FAYVMAKDIRNSLDGVKFKVQIEDKKEEISLKIPGLFSVYNALAA 301
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+ V +G L + + +V V GR E ++ + F V +DYAHTPD + ++++++E
Sbjct: 302 ITVADFLGISLRSVREALSQV-TVKGRFEPVETGKDFYVFIDYAHTPDGIQNMMEALKEY 360
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
R I + G G+ DR KRPLM +IA +D ILTSDNP +E+P +I+ + G+ T
Sbjct: 361 KAGRKILLFGAGGDRDRIKRPLMGEIAGKYADFCILTSDNPRSEEPREIISQIEEGIKKT 420
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
Y+ EN R+ A+R A+ ++ D++++AGKGHETYQI G+
Sbjct: 421 DCPYVVI-EN-----------------RKEAIRYALLNAQKDDVIILAGKGHETYQIIGN 462
Query: 364 KKEFFDDREESREAL 378
K FD+RE +E L
Sbjct: 463 KVIPFDEREIVKEIL 477
>gi|218131852|ref|ZP_03460656.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697]
gi|317474533|ref|ZP_07933807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
1_2_48FAA]
gi|217986155|gb|EEC52494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides eggerthii DSM 20697]
gi|316909214|gb|EFV30894.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
1_2_48FAA]
Length = 482
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 132/388 (34%), Positives = 206/388 (53%), Gaps = 43/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M +G + ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DRAIPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQQ 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ ++L + G+L E++ +G+
Sbjct: 244 VMTQNTRSRVYTYSLRS-----------LSDFKGKILESHFEGMLLDFNNRELAVRFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N YN+LA + +G ED++ + + V GR + I + IVDYAHTPDAL
Sbjct: 293 FNAYNLLAVFGAAVLLGKKEEDVLIALSTLHPVAGRFDSIRSPKGITAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ ++ ++ITVVG G D+GKRP+M K + SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHDVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGW-TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ MQ+ + + R+ A++ A + + GD++++A
Sbjct: 413 INDMLAGLDKDDMQKTISITD------------------RKEAIKTAYMLAQPGDVILIA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHE YQ K FDD+E +E +
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEIIKEIMN 482
>gi|423214888|ref|ZP_17201416.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides xylanisolvens CL03T12C04]
gi|392692151|gb|EIY85389.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides xylanisolvens CL03T12C04]
Length = 482
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 133/388 (34%), Positives = 204/388 (52%), Gaps = 43/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PKSAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + L F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LCDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G E+++ + + V GR + + Q IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGVTAIVDYAHTPDALI 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ + + R+ A+R A + E+GD+++VA
Sbjct: 413 INDMLAGLDAEDMKKTISIAD------------------RKEAIRTACMLAEKGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHE YQ K FDD+E +E +
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEVLKEIFK 482
>gi|237802692|ref|YP_002887886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydia trachomatis B/Jali20/OT]
gi|231273926|emb|CAX10718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
[Chlamydia trachomatis B/Jali20/OT]
Length = 483
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 140/380 (36%), Positives = 213/380 (56%), Gaps = 31/380 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ + I G+N++ TTPDA+++Q A+M+ A VME SS G+ALGR
Sbjct: 128 GRRTGLIGTIEH-ILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVMEVSSIGMALGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
E +F V TN+ DH+DFHG+ EEY AK + F+ + PE+ VVN+D A SF+
Sbjct: 187 VRETEFLAGVLTNIISDHLDFHGSLEEYIAAKKQFFASL--PEKGIAVVNLDCEYAPSFL 244
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
V++A+ +++AD + +L + + + + L+G HN+YN+L
Sbjct: 245 --NGSQARAVSYAI-HQEADYRADRLKLYSSGSSYDIWYQGQVFPCETSLIGEHNVYNVL 301
Query: 182 AAVA-VGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
A++A V +G D+VR + + A GR + I F V +DYAHTPDAL + +
Sbjct: 302 ASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPI-LLGPFPVYIDYAHTPDALDNVCRIL 360
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+L P+ R+I V GC G+ DR KRPLM K+ ++ + +TSDNP EDP I+ D+
Sbjct: 361 LQLLPKDGRLIIVFGCGGDRDRVKRPLMAKV-SEHYGFSFVTSDNPRTEDPDQIIADICK 419
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G++ Y+ E+D R++A+ A++M + D+V+VAGKGHE Y
Sbjct: 420 --GFSTDHYVV--ESD----------------RKLAIEKAISMASDKDIVLVAGKGHEGY 459
Query: 359 QIEGDKKEFFDDREESREAL 378
QI + FDDRE EAL
Sbjct: 460 QIFKHQTIVFDDREVVCEAL 479
>gi|429125003|ref|ZP_19185535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brachyspira hampsonii 30446]
gi|426279065|gb|EKV56092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brachyspira hampsonii 30446]
Length = 508
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 134/383 (34%), Positives = 218/383 (56%), Gaps = 32/383 (8%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+T ++ ++ I G ++++ TTP+++ ++++ K L G +VME+SS LA+ RC
Sbjct: 145 KTTLIGTIKNMI-GKTEIKTNLTTPESIDLESIFYKSLKKGISHIVMESSSQALAMNRCD 203
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK--VVNIDDPN---AT 118
+++D A+FTN+T DH+D+HG + Y AK KLFS + + + +K +VNID N +
Sbjct: 204 YLNYDTAIFTNITEDHLDYHGDMQNYLKAKLKLFSLLKESSKKKKLAIVNIDTDNFKQIS 263
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQV-LVNTPHGILEISSGLLGRHNI 177
++I + + +VT+ + N+KAD + L+ T+ I ++ +LGR NI
Sbjct: 264 NYIKK--LKINMVTYGI-NEKADYYGKVISLTSKNTEYEFYAKGKFISKVKLSMLGRFNI 320
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQ-AFGVIVDYAHTPDALSRL 236
N L+ +A +E ++ + +V V GR E++ +E+ F V VDY+HTPD+L +
Sbjct: 321 LNSLSILAYACENKLDIEKSIKAMRKVQ-VAGRFEIVTKEKHPFIVAVDYSHTPDSLENI 379
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L R+L P R+I V GC G+ DR KRP+M +IA S++ ILT+DN ED I++D+
Sbjct: 380 LIEARKLNPNRVIAVFGCGGDRDRKKRPIMAEIAEKYSNIVILTTDNQRTEDINQIMNDI 439
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
G +N Y + + R+ A+ AV + D++++AGKGHE
Sbjct: 440 EKGF-----------KNKNYKKIID---------RKEAIFEAVREAKANDIIIIAGKGHE 479
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI DK FDDREE+R AL+
Sbjct: 480 TYQIFPDKTIHFDDREEARNALK 502
>gi|228469384|ref|ZP_04054398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Porphyromonas uenonis 60-3]
gi|228309068|gb|EEK17698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Porphyromonas uenonis 60-3]
Length = 499
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 139/378 (36%), Positives = 203/378 (53%), Gaps = 29/378 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G+R + S+V I GD + + TTPDA+ + +M M+ G + ME SSH L
Sbjct: 141 LGMRAALFSTVCIRI-GDEEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQ 199
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +A+FTNLTRDH+D+HGT + Y AK LF + P+ + +VN DD N +
Sbjct: 200 RVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLLFDNL-SPDAY-ALVNADDRNGSVM 257
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N + T+AM + + L + T +L N E+ L+G +N YN+
Sbjct: 258 VQ--NCAAHLHTYAMRSHADYMSQLLGQYVDGSTLLLDNE-----EVEIKLVGSYNAYNV 310
Query: 181 LAAVAVGIAVGAPLED--IVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
A V + L+ I+RGI ++ V GR +L+ + + V+VDYAHTPDAL LL
Sbjct: 311 TAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLLASPRGYHVVVDYAHTPDALENLLK 370
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+V EL ++ VVG G+ D GKRP M +IA + + LTSDNP +EDP I+D ML
Sbjct: 371 TVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCNCLYLTSDNPRSEDPQTIIDQMLE 430
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ P +++ + RR A+ A A + GD+VV+AGKGHETY
Sbjct: 431 GI-----------------PQVERDQVYTNVSRRQAITDACAAAQRGDLVVIAGKGHETY 473
Query: 359 QIEGDKKEFFDDREESRE 376
Q K FDD+E ++E
Sbjct: 474 QEIKGIKHHFDDKEVAQE 491
>gi|86134331|ref|ZP_01052913.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
[Polaribacter sp. MED152]
gi|85821194|gb|EAQ42341.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
[Polaribacter sp. MED152]
Length = 481
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 201/381 (52%), Gaps = 43/381 (11%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+LS+V + G+ + ++ TTPD+V + + ML G E ME SSHG+ R
Sbjct: 124 GYKVGLLSTVKILV-GNKEYKATHTTPDSVTINRYLDMMLDAGVEYCFMEVSSHGIHQKR 182
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ F +FTNL+ DH+D+H EYRN K K F + P+ + NIDD N
Sbjct: 183 TEGLQFSGGIFTNLSHDHLDYHKDFAEYRNVKKKFFDDL--PKSAFALTNIDDKN----- 235
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFE-LSLFETQVLVNTPHGIL------EISSGLLGR 174
GN + ++N KA + + L+ F+ ++L G L E+ + L+G
Sbjct: 236 --GN-------YMLQNTKAKKYSYALKTLADFKAKILEKQLSGTLISIDNTEVWTKLIGV 286
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
NIYN+ A +A +G DI+ + ++++V GR E + E IVDYAHTPDAL
Sbjct: 287 FNIYNLTAIIATAELLGLEKLDILTIVSQLESVNGRFEYVVSEDGVTAIVDYAHTPDALK 346
Query: 235 RLLDSVRELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ ++ ++ITVVGC G+ D+ KRP M IA S+ I TSDNP EDP I
Sbjct: 347 NVLETINDIRTNNEKVITVVGCGGDRDKSKRPKMAHIAAHLSNQAIFTSDNPRTEDPQII 406
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
LD+M AG+ P N ++ RR A++ A + + GD++++AG
Sbjct: 407 LDEMEAGIS---------------PEHYNKTLTVVN--RRQAIKTACKLSDAGDIILIAG 449
Query: 353 KGHETYQIEGDKKEFFDDREE 373
KGHE+YQ + F+D EE
Sbjct: 450 KGHESYQEINGVRSHFNDLEE 470
>gi|393786145|ref|ZP_10374283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides nordii CL02T12C05]
gi|392660509|gb|EIY54121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides nordii CL02T12C05]
Length = 485
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 134/381 (35%), Positives = 203/381 (53%), Gaps = 41/381 (10%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A R S
Sbjct: 132 KVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRIS 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
+ F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N +
Sbjct: 191 GLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PKSAFSLTNLDDKNG--LVMT 246
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGRHNI 177
N V T+++ + LS F+ +VL + G+L E+ +G+ N
Sbjct: 247 QNTRSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELMVQFIGKFNA 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA + +G ED++ + + V GR + I Q + IVDYAHTPDAL +L
Sbjct: 296 SNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVDYAHTPDALINVL 355
Query: 238 DSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+++ + ++ITVVG G D+GKRP+M K A SD ++TSDNP E+P DI++D
Sbjct: 356 NAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVVITSDNPRFEEPQDIIND 415
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
MLAG+ ++ + + D R+ A+R A + E+GD+++VAGKGH
Sbjct: 416 MLAGLDTEDRK----------------KTISITD-RKEAIRTACMLAEKGDVILVAGKGH 458
Query: 356 ETYQIEGDKKEFFDDREESRE 376
E YQ K FDD+E +E
Sbjct: 459 ENYQEIKGVKHHFDDKEILKE 479
>gi|254244772|ref|ZP_04938094.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Pseudomonas aeruginosa 2192]
gi|126198150|gb|EAZ62213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Pseudomonas aeruginosa 2192]
Length = 487
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 203/379 (53%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R ++ ++ +G LES R TTPD + VQ +A + G AV ME SSHGL
Sbjct: 126 LGERCCIVGTLGTGFYG--ALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FDIAVFTNL+RDH+D+HG+ E Y AKAKLF+ P +V+N+DD
Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAW---PGLRCRVINLDDDFGRR 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ D ++T+++ + A ++ + + + TPHG + S LLGR N+ N
Sbjct: 241 LAGE-EQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + +G PL DI+R + ++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 300 LLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDALEKVLEA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM IA +D ++T DNP E I+ D+ G
Sbjct: 360 LRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ D LP+ H I AV D+V++AGKGHE YQ
Sbjct: 420 ----------FAAADKVTFLPSRGEAIAHLIASAAVD---------DVVLLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREAL 378
+ F D E++ AL
Sbjct: 461 EIDGVRHPFSDIEQAERAL 479
>gi|381187411|ref|ZP_09894975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Flavobacterium frigoris PS1]
gi|379650539|gb|EIA09110.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Flavobacterium frigoris PS1]
Length = 480
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 140/395 (35%), Positives = 215/395 (54%), Gaps = 48/395 (12%)
Query: 2 GLRTGMLSSVSYYIHGDNK-LESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V + DNK ++ TTPD++ + + +++M+ G E ME SSHG+
Sbjct: 124 GFKVGLLSTVKILV--DNKEYKATHTTPDSITINHYLSEMIKEGVEYCFMEVSSHGIHQK 181
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F VFTNL+ DH+D+H T EYR+ K F + P+ + NIDD N
Sbjct: 182 RTEGLHFAGGVFTNLSHDHLDYHPTFAEYRDVKKSFFDNL--PKTAFALSNIDDKNGA-- 237
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N T+A+++ AD + Q+L N G+L E+ L+G
Sbjct: 238 VMMQNTTAVKRTYALKS-YAD----------YRAQILENQLSGLLLKIDGNEVWVKLIGT 286
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N YN+LA I +G + +R + E+++V GR + I + IVDYAHTPDAL
Sbjct: 287 FNAYNVLAIYGTAIELGLDSLETLRLLSELESVSGRFQYIVSKTNVTAIVDYAHTPDALE 346
Query: 235 RLLDSVRELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L ++ ++ + ++ITVVGC G D+ KRP+M IAT+ SD +LTSDNP NEDP I
Sbjct: 347 NVLKTINDIRTKNEQLITVVGCGGNRDKTKRPIMASIATELSDRVVLTSDNPRNEDPDVI 406
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ +M GV Q Y K L + D R+ A++ A + + D++++AG
Sbjct: 407 ISEMEKGVA--AQNYKKV--------------LAITD-RKQAIKTACQLAQPNDIIIIAG 449
Query: 353 KGHETYQ-IEGDKKEFFDDREESREALQYVDELHQ 386
KGHETYQ I+G + + FDD + +E L+ +LH+
Sbjct: 450 KGHETYQEIKGVRND-FDDMKIVKEILE---QLHK 480
>gi|330997822|ref|ZP_08321657.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
11841]
gi|329569710|gb|EGG51475.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
11841]
Length = 485
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 198/382 (51%), Gaps = 45/382 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+ S+V YI D + + TTPD + + L+ +M G + ME SSH +A
Sbjct: 131 FGYKCGLCSTVCNYID-DEAVPTEHTTPDPITLNRLLGRMADEGCKYAFMEVSSHAVAQH 189
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + F +FTNLTRDH+D+H T E YR+AK F + P+ V N+DD N
Sbjct: 190 RIAGLKFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDGL--PKGAFAVTNVDDRNGMIM 247
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFE-LSLFETQVLVNTPHGIL------EISSGLLG 173
+ +N KA V+ ++ F+ +VL + G+ E+S +G
Sbjct: 248 V--------------QNTKAVVNTYSLRAVADFKAKVLEESFEGMCLDVNGKEVSVPFIG 293
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
R N+ N+LA A + +G ED++ + + V GR E I + IVDYAHTPDAL
Sbjct: 294 RFNVSNLLAVYAAAVCMGRGAEDVLVALSTLRPVNGRFETIRSREGVTAIVDYAHTPDAL 353
Query: 234 SRLLDSVRELAPRR--IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
+L +V E+ RR +ITV G G D+GKRP+M + A SD I+TSDNP E+P +
Sbjct: 354 VNVLSTVNEILKRRGEVITVCGAGGNRDKGKRPIMAQEAVKNSDRVIITSDNPRFEEPQE 413
Query: 292 ILDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVV 350
I++DMLAG+ M++ + + R+ A+R A M GD+V+V
Sbjct: 414 IINDMLAGLDKEQMRKVISIVD------------------RKEAIRTACMMARPGDVVLV 455
Query: 351 AGKGHETYQIEGDKKEFFDDRE 372
AGKGHE YQ K FDD E
Sbjct: 456 AGKGHEDYQEVKGVKHHFDDHE 477
>gi|313203977|ref|YP_004042634.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
[Paludibacter propionicigenes WB4]
gi|312443293|gb|ADQ79649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Paludibacter propionicigenes WB4]
Length = 481
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 210/387 (54%), Gaps = 43/387 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G ++G+LS+V Y++ D +E+ TTPDA+ + L+A+M+ G E ME SSH +
Sbjct: 129 LGHKSGLLSTVCNYVN-DLAVEATHTTPDALALNALLAQMVDAGCEYAFMEVSSHSIDQH 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S ++FD A+FTN+TRDH+D+H T E Y AK + F + + N DD N
Sbjct: 188 RISGLEFDGAIFTNITRDHIDYHLTFENYLKAKKQFFDNL--STDAFALTNADDKNGLVM 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFE-LSLFETQVLVNTPHGIL------EISSGLLG 173
++N KA + ++ F+T++L + G+L E++ +G
Sbjct: 246 --------------LQNSKAKKYTYSLRGMADFKTRILEHGFEGMLLDMNDKEVNVSFIG 291
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
+ N N+ A + +G +++R I + +V GR E + + IVDYAHTPDAL
Sbjct: 292 KFNASNLSAVFGAAVLLGQDELEVLRIISSLHSVSGRFETLHSPAGYTAIVDYAHTPDAL 351
Query: 234 SRLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
++ ++ ++ R+ITVVGC G D+GKRP+M + A + S ILTSDNP E+P +
Sbjct: 352 VNVIGTINQILQGNGRLITVVGCGGNRDKGKRPMMAREAVNGSWKAILTSDNPRFEEPQE 411
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL+DMLAG+ + L + D RR A++ A A+ + GD+V+VA
Sbjct: 412 ILNDMLAGL----------------DVVEKAKSLTIVD-RREAIKTACALAQAGDVVLVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI K FDDREE R+
Sbjct: 455 GKGHEDYQIIQGVKHHFDDREEVRKCF 481
>gi|409395392|ref|ZP_11246469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas sp. Chol1]
gi|409120021|gb|EKM96391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas sp. Chol1]
Length = 487
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 135/378 (35%), Positives = 210/378 (55%), Gaps = 24/378 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G R G++ ++ HG+ + + TTPDA+ VQ +A + + AV ME SSHGL G
Sbjct: 126 LGQRCGIIGTLGNGFHGELE-QGYHTTPDAIGVQATLASLKQHEARAVAMEVSSHGLEQG 184
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + FD+AVFTNL+RDH+D+HG+ E Y AKA+LF P +V+N+DD
Sbjct: 185 RVAALAFDVAVFTNLSRDHLDYHGSMEAYAAAKARLFDM---PGLRCRVINLDDAFGRRL 241
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
AQ + ++T+++E+ AD++ + +L + TP G + S LLGR N+ N+
Sbjct: 242 AAQPQ-ESRLITYSLEDASADLYCPEPQLDDDGIHARLITPQGERSLRSPLLGRFNVSNV 300
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAAV + + PL++I+ + E+ GR + + V+VDYAHTPDAL ++L ++
Sbjct: 301 LAAVGALLGMDWPLDEILAVLPELHGPAGRMQRLGGGDLPLVVVDYAHTPDALEKVLTAL 360
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R A +++ + GC GE DRGKR LM ++A +D + T DNP NE IL+D+ G
Sbjct: 361 RPHARGQLVCLFGCGGERDRGKRALMAQVAERLADRVVATDDNPRNEPAEQILEDIRQGF 420
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+ + G R A+ A+A + D+V++AGKGHE YQ
Sbjct: 421 AQPERVQFRPG-------------------RGAAIAAAIAAAQPEDVVLLAGKGHEDYQE 461
Query: 361 EGDKKEFFDDREESREAL 378
++ F D +E+R+AL
Sbjct: 462 ICGVRQPFSDLDEARKAL 479
>gi|298480584|ref|ZP_06998781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. D22]
gi|298273405|gb|EFI14969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. D22]
Length = 482
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 133/388 (34%), Positives = 204/388 (52%), Gaps = 43/388 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + + +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PKSAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + L F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LCDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G E+++ + + V GR + + Q IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGVTAIVDYAHTPDALI 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ L + R+ A+R A + E+GD+++VA
Sbjct: 413 INDMLAGLDAEDMKKTLSIAD------------------RKEAIRTACMLAEKGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHE YQ K FDD+E +E +
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEVLKEIFK 482
>gi|410637807|ref|ZP_11348377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Glaciecola lipolytica E3]
gi|410142493|dbj|GAC15582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Glaciecola lipolytica E3]
Length = 508
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 136/382 (35%), Positives = 198/382 (51%), Gaps = 47/382 (12%)
Query: 6 GMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEV 65
G L + Y + ++ TTPDA VQ L+AK + +G + V +EASSH L GR +
Sbjct: 146 GTLGAGIYNVDNSGLEKTLNTTPDACQVQKLLAKYVQHGAKQVALEASSHALVQGRIQGL 205
Query: 66 DFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGN 125
DIAVFTNLTRDH+D+HG EY AK L ++ PE ++N DD ++I +
Sbjct: 206 KTDIAVFTNLTRDHLDYHGDMAEYARAKRLLLNQ---PELKDLILNADDAETENWIKAAS 262
Query: 126 PDVPVVTFAME----------------NKKADVHPLKFELSLFETQVLVNTPHGILEISS 169
+ F+ + N + D + L FEL + G I
Sbjct: 263 NTQTITVFSTQLDRTQVSSKHQYCLATNIQYDANGLSFEL---------QSSWGDAAIKC 313
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHT 229
GLLG+ N+ N+LAA+A + + PL+ + E++ V GR EL A +IVD+AHT
Sbjct: 314 GLLGKFNVSNLLAALASLLVLQRPLKTLAVLCEQLKPVAGRMELFKHPTAGNLIVDFAHT 373
Query: 230 PDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDP 289
PDAL + L S R +++I V GC G+ D+GKRPLM + A SD I+TSDN +E
Sbjct: 374 PDALEQALKSARVHCEKQLICVFGCGGDRDKGKRPLMGRAAQQFSDQIIITSDNSRSESE 433
Query: 290 LDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVV 349
I+ D+L G+ + R+ + R+ A++ A+A + GD++V
Sbjct: 434 NAIVSDILTGI-------------------SDNSRIKIETDRKKAIQLAIAQSQSGDLIV 474
Query: 350 VAGKGHETYQIEGDKKEFFDDR 371
VAGKGHET QI G + +D+R
Sbjct: 475 VAGKGHETEQIIGQQSLAYDER 496
>gi|189485182|ref|YP_001956123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate
ligase [uncultured Termite group 1 bacterium phylotype
Rs-D17]
gi|170287141|dbj|BAG13662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate
ligase [uncultured Termite group 1 bacterium phylotype
Rs-D17]
Length = 510
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 209/395 (52%), Gaps = 44/395 (11%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ G++ +V+Y G +E+ TTP ++ + +M + +NG + +VME SSH L+LGR
Sbjct: 127 GIECGVIGTVNYRYKG-KVIEANNTTPQSLDIYRIMRDISNNGIKYLVMEVSSHALSLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK---VVNIDDPNAT 118
++FD AVFTNLTR+H+DFH + Y AK+ LF + +++ K ++N+DD
Sbjct: 186 VYGIEFDTAVFTNLTREHLDFHKNMDRYFEAKSALFKELGAGKKNNKKCAIINVDDEYGR 245
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLK---------FELSLFETQVLVNTPHGILEISS 169
+ G + A+E AD F L + + H
Sbjct: 246 KLLKVGISAEIKLYSAIEKNAADFKASNIKVTNKGAVFNLVFCNKRARIRIKH------- 298
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDE-EQAFGVIVDYAH 228
+G HN+YN LAA+A + E+ V G+ VPGR E ++ F ++VDYAH
Sbjct: 299 --IGVHNVYNALAALAAAVCSEISFENAVEGLNNSSRVPGRLEKVNTIGLGFEIVVDYAH 356
Query: 229 TPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
T DAL +L ++++L P+RII V GC G+ DR KRPLM KIA + SD +TSDNP ED
Sbjct: 357 TDDALESVLRALKDLNPKRIIIVFGCGGDRDRAKRPLMGKIAVEMSDFVFVTSDNPRTED 416
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAM-GEEGDM 347
P I+ D+ G+ + G+ +Y + R A++ + M ++GD+
Sbjct: 417 PYQIILDIEVGIK-------RAGKKNYKVVVD----------REAAIKEVIMMAADKGDI 459
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQYVD 382
+++AGKGHETYQI K F+D + A +Y+D
Sbjct: 460 ILLAGKGHETYQITSGGKVHFND---VKIAEKYID 491
>gi|354581322|ref|ZP_09000226.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus lactis
154]
gi|353201650|gb|EHB67103.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus lactis
154]
Length = 503
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 197/374 (52%), Gaps = 24/374 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ I G++ + TTPD + +Q M G E V+E SSHGL LGR
Sbjct: 130 GRKTGIIGTLYMRI-GEHAEPTLNTTPDTIQLQRYFHAMAARGAEYAVLEVSSHGLDLGR 188
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPER---HRKVVNIDDPNAT 118
DF VFTNL+ DH+D+H + YRN K LFS++ + R + V+N DD A+
Sbjct: 189 VRGSDFQTVVFTNLSHDHLDYHLNMDSYRNTKELLFSQLGNSSRDMQKKAVLNADD-EAS 247
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
++ A+ VVT+ ++ + A + + +V +P G S + G +N+Y
Sbjct: 248 AYYAK-RTSAQVVTYGIK-QPAHIRAEDIRHASEGCSFMVRSPWGDGRFSLKVQGMYNVY 305
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N LAA+AV + G LEDI +E+ V GR + I ++F V+VDYAH PD L L
Sbjct: 306 NALAAIAVSLVEGIHLEDIRHSLEQFAGVQGRFQEIQTNKSFRVVVDYAHNPDGLKAALQ 365
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
S R + ++I V+GC GE DR KRP+M IA SD T+DNP +EDP IL +ML
Sbjct: 366 SARSITSGKMICVLGCRGERDRLKRPIMADIAASHSDYVFFTTDNPFSEDPEVILAEMLD 425
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G L E+ + + N R+ A++ AV M + D +++ G+GHE
Sbjct: 426 G--------LNARESINWEVVLN---------RKEAIQRAVEMAGDEDRIIITGRGHERR 468
Query: 359 QIEGDKKEFFDDRE 372
+ G E F D E
Sbjct: 469 YVAGGTTELFSDEE 482
>gi|354603418|ref|ZP_09021416.1| hypothetical protein HMPREF9450_00331 [Alistipes indistinctus YIT
12060]
gi|353348798|gb|EHB93065.1| hypothetical protein HMPREF9450_00331 [Alistipes indistinctus YIT
12060]
Length = 482
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 135/389 (34%), Positives = 203/389 (52%), Gaps = 43/389 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G++S+V Y + D ++ S TTPD++ + +MA+M+ G + ME SSH L
Sbjct: 128 LGYKAGLISTVVYCVD-DREIPSTHTTPDSIRLNAMMAEMVEAGCDYCFMEVSSHSLVQH 186
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + F +F+N+T DH+D+H T EY AK F + P + N DD N
Sbjct: 187 RTAGLAFVGGIFSNITHDHLDYHKTFAEYIRAKKLFFDGL--PAGAFALTNADDRNGMVM 244
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+A+++ + F +++ G+L E+ LGR
Sbjct: 245 VQ--NTKATVKTYALQS-----------FADFRCRIVETLLDGMLLNLDGSEVWVKFLGR 291
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N YN+ + A + + A ++++R + ++ +V GR E I ++ IVDYAHTPDAL
Sbjct: 292 FNAYNLTSVYATALLLDARRDEVLRILSDLTSVDGRFEPIHSKEGVTAIVDYAHTPDALQ 351
Query: 235 RLLDSVRELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
++ ++ E+ + R+ VVGC G D KRP M KIA D SD+ +LTSDNP E+P I
Sbjct: 352 NVIGTINEIRKKDQRLYVVVGCGGNRDATKRPEMAKIAVDGSDMAVLTSDNPRLEEPGAI 411
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++ M +G L G R RR A++ AVA+ GD+++VAG
Sbjct: 412 IEQMKSG-------------------LEPGARYLAITDRREAIKAAVALARPGDIILVAG 452
Query: 353 KGHETYQIEGDKKEFFDDREESREALQYV 381
KGHETYQ G K FDDREE R A V
Sbjct: 453 KGHETYQDVGGVKHHFDDREEVRAAFGTV 481
>gi|78356084|ref|YP_387533.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfovibrio alaskensis
G20]
gi|78218489|gb|ABB37838.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio alaskensis
G20]
Length = 484
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 200/384 (52%), Gaps = 41/384 (10%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG+L +V++ G ++ +P TTPD V + ++++ M G EA ME SSH L R S
Sbjct: 129 TGLLGTVNFRWPGHDE-AAPMTTPDCVELHSMLSDMRDAGVEAAFMEVSSHALDQQRVSG 187
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
F A+ TNLT+DH+D+H E Y +AK++LF + D E VN DDP + Q
Sbjct: 188 ARFAAALLTNLTQDHLDYHHDMEAYFSAKSRLFLELPD-EDKVCAVNADDPYGRRLLPQL 246
Query: 125 NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI----------LEISSGLLGR 174
V + + V P + + + +L + P G+ E+ S L+G
Sbjct: 247 GRGVGY------SVQGTVVP---DCQVLQATILSSGPDGLHLSMDFEGKTWELRSPLVGA 297
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+ A G+A+G P+E ++G+ VPGR E I+ ++ V VDYAHTPDAL
Sbjct: 298 FNASNLAGVQAAGLAMGLPVE-AMQGLASFSGVPGRMERIENDKGLNVFVDYAHTPDALE 356
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L ++R R+I V GC G+ DR KRPLM + +DV +LTSDNP EDP+ I+
Sbjct: 357 NVLRALRAAGFARVIAVFGCGGDRDRTKRPLMGQAVCRHADVAVLTSDNPRTEDPVAIMA 416
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
D+ G+ + D+ P+ RR A+ AV M GD V+VAGKG
Sbjct: 417 DVKPGL----------AQCDHVVEEPD---------RRKALAAAVEMARPGDAVLVAGKG 457
Query: 355 HETYQIEGDKKEFFDDREESREAL 378
HE YQ+ G K F D+E RE L
Sbjct: 458 HEDYQVIGTTKIHFSDQETLRELL 481
>gi|120555368|ref|YP_959719.1| UDP-N-acetylmuramyl tripeptide synthetase [Marinobacter aquaeolei
VT8]
gi|120325217|gb|ABM19532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Marinobacter aquaeolei VT8]
Length = 494
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 193/377 (51%), Gaps = 23/377 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G+L ++ Y + G + + TTPD V V ++ ++ + G A VME SSH L GR
Sbjct: 134 GTPCGLLGTLGYGMPGSIE-SATHTTPDVVQVNRVLNRIRNEGGRAAVMEVSSHALDQGR 192
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ AVFTNLTRDH+D+HG+ E Y AKA+LF R E H V+N DDP
Sbjct: 193 VDNLTMTGAVFTNLTRDHLDYHGSMEAYGEAKARLFLR---EELHFSVINFDDPFGRQLY 249
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
Q V +++ + ++ +F + + V+ G +++ LLG N N+L
Sbjct: 250 GQLEGQCDRVRYSLHEAQTELWLKEFTPTASGFRARVDGQWGEFDLTVPLLGSFNASNVL 309
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA+A + +G P+E V + E+ PGR E V+VDYAHTPDAL+ L+++R
Sbjct: 310 AALATVLTLGVPVERAVSVVRELSPPPGRLERFTGSTGKHVVVDYAHTPDALANALEALR 369
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
R+I V GC G+ D GKRP M K A ++D I+T DNP E P I+ D+ AG
Sbjct: 370 PHTRGRLICVFGCGGDRDPGKRPEMAKEAEKRADYVIVTDDNPRTEQPERIVSDISAGFT 429
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
G +HD R A+ A+ M E D+V++AGKGHE YQ
Sbjct: 430 QA------------------GRWQVIHD-RAQAIAEALGMANEDDLVLIAGKGHEAYQEI 470
Query: 362 GDKKEFFDDREESREAL 378
+K F D E+ R L
Sbjct: 471 RGQKLPFSDAEQVRHLL 487
>gi|300112938|ref|YP_003759513.1| UDP-N-acetylmuramyl tripeptide synthetase [Nitrosococcus watsonii
C-113]
gi|299538875|gb|ADJ27192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii
C-113]
Length = 519
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 198/353 (56%), Gaps = 25/353 (7%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TTPDA+ VQ +A M+ + V+E SSH L GR S V F+IA+FTNL+R+H+D+
Sbjct: 175 SSLTTPDAITVQEQLAAMVASKARYAVLEVSSHALGQGRVSGVAFNIAIFTNLSREHLDY 234
Query: 83 HGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADV 142
HG Y AK +LF++ P V+N DD +F+A P+V +++ + N +A +
Sbjct: 235 HGDMARYEAAKFRLFNQ---PGLRHAVINGDDAAGRAFLANLPPEVKAISYGLMNPQASL 291
Query: 143 HPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIE 202
H K + + + G +++ LLGR N YN+LAA+ +AVG P + ++ +
Sbjct: 292 HTGKLRCDRHGIAMTIQSAWGEGQLTCPLLGRFNAYNLLAALGGLLAVGMPFTEALQRLS 351
Query: 203 EVDAVPGRCE-LIDEEQAFGVIVDYAHTPDALSRLLDSVR-ELAP-RRIITVVGCAGESD 259
+V AV GR E L EE ++VDYAHTPDAL ++L S+R L P R+ V GC G D
Sbjct: 352 QVRAVVGRMESLGGEEGEPLLVVDYAHTPDALEQVLRSLRAHLGPGGRLWCVFGCGGNRD 411
Query: 260 RGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPL 319
RGKRPLM A +D +LT DNP NEDP+ I+ D+L+G+
Sbjct: 412 RGKRPLMGAAAERLADFVMLTDDNPRNEDPIQIIVDILSGID------------------ 453
Query: 320 PNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDRE 372
+ R++ R A+ A + E D+V++AGKGHE YQ G ++ F DRE
Sbjct: 454 -DPDRVYQFRNRSEAIIRATQLAEPEDIVLIAGKGHEEYQQIGAEQRPFSDRE 505
>gi|296394969|ref|YP_003659853.1| UDP-N-acetylmuramyl tripeptide synthetase [Segniliparus rotundus
DSM 44985]
gi|296182116|gb|ADG99022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus
DSM 44985]
Length = 506
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 146/377 (38%), Positives = 197/377 (52%), Gaps = 31/377 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +V I G + S TTP+A Q+L+A M G E V+ME SSH L GR
Sbjct: 145 GRATGVIGTVETRI-GSQSVASSFTTPEAPQTQSLLAVMAEAGVEVVLMEVSSHALDFGR 203
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP--NATS 119
F FTNL+ DH+D HG E Y AKAKLF R V+ +DD S
Sbjct: 204 VDGTRFAAGGFTNLSHDHLDHHGDMESYFQAKAKLFQPGSSVAARRAVICVDDSWGQRMS 263
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPL-KFELSLFETQVLVNTPH-GILEISSGLLGRHNI 177
+A+G+ VT A ++ AD L + E L QVLV P GLLGRHN
Sbjct: 264 RVARGS-----VTVATGDEAADWAVLERREDELGAQQVLVRGPRERQFAFRLGLLGRHNA 318
Query: 178 YNILAAVAVGIAVGAPL-EDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
N + AV + A G + E++VRG ++ AVPGR E + Q F +VDYAH P++L+++
Sbjct: 319 ANAVLAVGLAEATGVRVTEELVRGWADI-AVPGRLERVQAGQDFLAVVDYAHKPESLAKV 377
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L ++RE RI VVG G+ D+GKRP+M +++ +++ ++T DNP +EDP I +
Sbjct: 378 LQALREHTAGRIAVVVGAGGDRDQGKRPMMGEVSASGAELVVVTDDNPRSEDPAAIRAQV 437
Query: 297 LAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
LAG G + E + R A+ AV GD V+VAGKGH
Sbjct: 438 LAGAQGSSRAEVWEVAS------------------RAEAIARAVRWARAGDTVLVAGKGH 479
Query: 356 ETYQIEGDKKEFFDDRE 372
ETYQ K FDDRE
Sbjct: 480 ETYQEVNGVKSHFDDRE 496
>gi|423304796|ref|ZP_17282795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides uniformis CL03T00C23]
gi|423310090|ref|ZP_17288074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides uniformis CL03T12C37]
gi|392682730|gb|EIY76072.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides uniformis CL03T12C37]
gi|392683460|gb|EIY76795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides uniformis CL03T00C23]
Length = 482
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 203/381 (53%), Gaps = 43/381 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M +G + ME SSH +A
Sbjct: 129 FGYKVGLVSTVCNYID-DLPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEL--PKGAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGKVLESHFEGMLLDFNNHELAVRFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N YN+LA + +G ED++ + + V GR + I + + IVDYAHTPDAL
Sbjct: 293 FNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAIRSPKGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K + SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGW-TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ MQ+ + + RR A++ A + + GD+++VA
Sbjct: 413 INDMLAGLDKDDMQKTISITD------------------RREAIKTACMLAQPGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDRE 372
GKGHE YQ K FDD+E
Sbjct: 455 GKGHENYQEIKGVKHHFDDKE 475
>gi|317478451|ref|ZP_07937611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
gi|316905340|gb|EFV27134.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
Length = 482
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 203/381 (53%), Gaps = 43/381 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M +G + ME SSH +A
Sbjct: 129 FGYKVGLVSTVCNYID-DLPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEL--PKGAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGKVLESHFEGMLLDFNNHELAVRFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N YN+LA + +G ED++ + + V GR + I + + IVDYAHTPDAL
Sbjct: 293 FNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAIRSPKGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K + SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGW-TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ MQ+ + + RR A++ A + + GD+++VA
Sbjct: 413 INDMLAGLDKDDMQKTISITD------------------RREAIKTACMLAQPGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDRE 372
GKGHE YQ K FDD+E
Sbjct: 455 GKGHENYQEIKGVKHHFDDKE 475
>gi|431928352|ref|YP_007241386.1| UDP-N-acetylmuramyl tripeptide synthetase [Pseudomonas stutzeri
RCH2]
gi|431826639|gb|AGA87756.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas stutzeri
RCH2]
Length = 487
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 212/380 (55%), Gaps = 28/380 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G G++ ++ HG +LE R TTPDA+ VQ +A + G AV ME SSHGL
Sbjct: 126 LGEPCGIIGTLGTGFHG--QLELGRHTTPDAIGVQATLANLKQEGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + +DFD+AVFTNL+RDH+D+HGT E Y AKA+LF+ P +V+N+DD +
Sbjct: 184 GRVAALDFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFNV---PGLRCRVINLDDGFGRA 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + + ++T+++E+ A ++ + L + TP G + S LLGR N+ N
Sbjct: 241 LAGE-DRESRLITYSLEDPSAYLYCAEARLDDDGIHARLITPQGERSMRSPLLGRFNVSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + + L++I+ + E++ GR + + ++VDYAHTPDAL ++L +
Sbjct: 300 VLAAVGALLGMDYALDEILAVLPELEGPAGRMQRLGGGDHPLIVVDYAHTPDALEKVLTA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM ++A +D ++T DNP NE P I++D+ +G
Sbjct: 360 LRPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGIVVTDDNPRNEAPERIVEDIRSG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+G R A+ +A D+VV+AGKGHE YQ
Sbjct: 420 FVNPAAATFAHG-------------------RAQAIAGLIATAHAEDVVVLAGKGHEDYQ 460
Query: 360 -IEGDKKEFFDDREESREAL 378
I G++ F D EE+ +AL
Sbjct: 461 EIRGERLP-FSDIEEACKAL 479
>gi|392422315|ref|YP_006458919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri CCUG 29243]
gi|390984503|gb|AFM34496.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri CCUG 29243]
Length = 487
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 205/379 (54%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G G++ ++ HG +LE R TTPDA+ VQ +A + G AV ME SSHGL
Sbjct: 126 LGEPCGIIGTLGTGFHG--QLELGRHTTPDAIGVQATLANLKQEGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + +DFD+AVFTNL+RDH+D+HG+ + Y AKA+LF P +V+N+DD
Sbjct: 184 GRVAALDFDVAVFTNLSRDHLDYHGSMDAYGAAKARLFEV---PGLSCRVINLDDAFG-R 239
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+A + ++T+++E+ A + + L + TP G + S LLGR N+ N
Sbjct: 240 VLAGEERESRLITYSLEDPTAYLFCAEARLDDDGIHARLITPQGERSLRSPLLGRFNVSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + + PL++I+ + E+ GR + + ++VDYAHTPDAL ++L +
Sbjct: 300 VLAAVGALLGMDYPLDEILAVLPELQGPAGRMQRLGGGDHPLIVVDYAHTPDALEKVLTA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM ++A +D ++T DNP NE P IL+ + +G
Sbjct: 360 LRPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPEQILEGIRSG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+G R A+ +A D+VV+AGKGHE YQ
Sbjct: 420 FSNPAAVTFSHG-------------------RAQAIASLIAAARAEDVVVLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREAL 378
++ F D EE+ AL
Sbjct: 461 EVRGERLLFSDLEEACRAL 479
>gi|146299566|ref|YP_001194157.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Flavobacterium johnsoniae UW101]
gi|146153984|gb|ABQ04838.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacterium
johnsoniae UW101]
Length = 487
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 133/393 (33%), Positives = 210/393 (53%), Gaps = 47/393 (11%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESP--RTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
G + G+LS+V + +K E P TTPD++ + + + +M G ME SSHG+
Sbjct: 131 GFKVGLLSTVKIVV---DKTEYPATHTTPDSLTINHYLNEMAEAGVTHCFMEVSSHGIHQ 187
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
R + F +FTNL+ DH+D+H T EYR+ K F + P+ + NIDD N +
Sbjct: 188 KRTEALHFVGGIFTNLSHDHLDYHPTFAEYRDVKKSFFDSL--PKTAFVLSNIDDKNGSV 245
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLG 173
+ N +T+A+++ AD + Q+L + G+L E+ L+G
Sbjct: 246 MLQ--NTAAKKLTYALKSY-AD----------YRAQILESQLSGLLLKVNDNEVWVKLIG 292
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
N YN+LA + +G + +R + ++++V GR + I + +VDYAHTPDAL
Sbjct: 293 TFNAYNVLAIYGTAVELGIDSLEALRLLSDLESVSGRFQYIVSDNGITAVVDYAHTPDAL 352
Query: 234 SRLLDSVRELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
+L ++ ++ + ++ITVVGC G D+ KRP+M KIATD SD ILTSDNP NEDP
Sbjct: 353 ENVLKTINDIRTKNEQLITVVGCGGNRDKTKRPIMAKIATDLSDKAILTSDNPRNEDPEV 412
Query: 292 ILDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVV 350
ILD+M GV G ++ L+ + R+ A++ A + + D++++
Sbjct: 413 ILDEMEQGVEGHNYKKVLRITD------------------RKQAIKTACQLAQSKDIILI 454
Query: 351 AGKGHETYQIEGDKKEFFDDREESREALQYVDE 383
AGKGHETYQ + FDD E +E L+ +++
Sbjct: 455 AGKGHETYQEINGVRHHFDDMETVKEILEQLNK 487
>gi|406904236|gb|EKD46087.1| hypothetical protein ACD_69C00025G0002 [uncultured bacterium]
Length = 494
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 137/384 (35%), Positives = 202/384 (52%), Gaps = 28/384 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G+ GM+ ++ G + TTPD V +Q + ++ +G +A+ ME SSHGLA G
Sbjct: 134 LGVACGMIGTIGIGFPG-KLVPVINTTPDPVTLQRWLFELTKSGAKAIAMEVSSHGLAQG 192
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + +DF I VFTNLTRDH+D+H T Y +AK LF + V+N DD S
Sbjct: 193 RVNGIDFSIGVFTNLTRDHLDYHDTMANYGDAKKSLF---LQYNLKYAVINADDEFGRSL 249
Query: 121 IAQGNPDVPVVTFAMENKKADVHPL----KFELSLFETQVLVNTPHGILEISSGLLGRHN 176
I + + V + + + D P ELSL V TP G + S LLGR N
Sbjct: 250 IQELKTLIDVCAYTISDVLIDEIPTIRAKNIELSLTAMSADVTTPWGTGLLRSRLLGRFN 309
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG-VIVDYAHTPDALSR 235
+ N+LA +AV + + + + GI E++ V GR ++ +Q V+VD+AHTPDAL +
Sbjct: 310 LSNLLAVLAVLGIMKIDISEALAGITELEGVDGRMQVFGGKQNQPLVVVDFAHTPDALEQ 369
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
L ++RE + + GC G+ DRGKRP+M K+ SD I+T+DNP E+P I+DD
Sbjct: 370 ALLALREYCHGALWCIFGCGGDRDRGKRPIMGKVVERYSDHMIITNDNPRTENPKQIVDD 429
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+L G+ ++Y R A+ A+ D++++AGKGH
Sbjct: 430 ILRGLLCPWAVEVEYD-------------------RAAAIVYAINSARADDVILIAGKGH 470
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
E YQI G++K F DRE +AL
Sbjct: 471 EDYQIVGEEKLPFSDREVVIKALS 494
>gi|167854988|ref|ZP_02477762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
29755]
gi|167853836|gb|EDS25076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
29755]
Length = 496
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 210/387 (54%), Gaps = 35/387 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G ++ ++ ++ ++G + E+ TT AV +Q+ +A + G + ME SSHGLA
Sbjct: 135 LGGKSAVMGTIGNGLYGQVQ-EAVNTTGSAVEIQHNLANFVELGADFCAMEVSSHGLAQY 193
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R +DFD+A+FTNL+RDH+D+H T EEY AK +LF + ++V+N DD +
Sbjct: 194 RAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGEL---SSKQQVINADDEIGRKW 250
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQ---VLVNTPHGILEISSGLLGRHNI 177
+A+ P+ V+ + + +K + F Q + + G E+ S L+G N+
Sbjct: 251 LAK-LPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFESSWGNGELKSRLIGAFNV 309
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE-LIDEEQAFG---VIVDYAHTPDAL 233
N+L A A +A+G L+ +V ++ V GR E LI EE A VIVDYAHTPDAL
Sbjct: 310 SNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMECLISEENAEESPMVIVDYAHTPDAL 369
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+ LD+ R + V GC G+ D GKRPLM +IA +D I+T DNP EDP I
Sbjct: 370 EKALDAARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIITDDNPRTEDPDVIF 429
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPP--LPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
+D++ G + P + + H IR+ A+ A+A E D++++A
Sbjct: 430 NDVMKG---------------FRKPKAVQSMH------IRQYAIEQAIAQAEPKDVILIA 468
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI G KK F D+E +R+ L
Sbjct: 469 GKGHEDYQIIGTKKYHFSDQEWARKFL 495
>gi|336323932|ref|YP_004603899.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Flexistipes sinusarabici DSM 4947]
gi|336107513|gb|AEI15331.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Flexistipes sinusarabici DSM 4947]
Length = 483
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 136/378 (35%), Positives = 198/378 (52%), Gaps = 28/378 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G++ + + Y + D ++ TTP + +M++ + G E V +EASSH L R
Sbjct: 128 GMKVVRIGTTEYKVV-DRVYQAKTTTPSSYEYYRMMSEGIEQGAEIVCIEASSHALEQER 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
FD+++FTNLT DH+D+H E+Y AK KLF ++ ++N DD +
Sbjct: 187 LYGTCFDLSIFTNLTGDHLDYHENMEKYFKAKQKLFD---SDYSYKALINADDFYGEKLL 243
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
G +P +A+EN AD + SL + L++ S ++GRHNIYNIL
Sbjct: 244 --GMSVIPSYLYAVENS-ADFKAFNIQNSL-DGVSFAAACGKELKLQSNMVGRHNIYNIL 299
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA A +G P I GI+ + +PGR E I + VDYAHT DAL +L S+
Sbjct: 300 AAAAASNILGVPETVIYEGIKNLKNIPGRLEKIVVNNRY-FFVDYAHTDDALKNVLQSLS 358
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
L +R+ITV GC G+ D+ KRP M K A SD ++T+DNP EDP I+ ++ G
Sbjct: 359 GLKKKRLITVFGCGGDRDKTKRPRMAKAAEAYSDKIVVTNDNPRTEDPASIIRNIETG-- 416
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
+ N Y +P+ RR A+ A + EE D+++VAGKGHE YQI
Sbjct: 417 --------FAGNTSYDVIPD---------RREAIIHAYEISEEEDIILVAGKGHEDYQIL 459
Query: 362 GDKKEFFDDREESREALQ 379
DK FDDR+E ++ L+
Sbjct: 460 KDKTIHFDDRQEIKKLLE 477
>gi|288800558|ref|ZP_06406016.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella sp. oral taxon 299 str. F0039]
gi|288332771|gb|EFC71251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella sp. oral taxon 299 str. F0039]
Length = 484
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 135/384 (35%), Positives = 201/384 (52%), Gaps = 35/384 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G+LS+V YI D + + TTPD + + L+++M+ G + V ME SSH +A
Sbjct: 129 LGYKCGLLSTVCNYIE-DEAVPADHTTPDPIALNYLLSRMVEAGCDYVFMECSSHAIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + F +FTNLTRDH+D+H T E YR+AK F + P+ + N DD N
Sbjct: 188 RIAGLHFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDSL--PKTSFAITNADDKNGMYM 245
Query: 121 IAQGNPDVPVVTF---AMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ N V T+ ++ + KA + FE E E+ +G+ N+
Sbjct: 246 VQ--NTKATVKTYSARSLADFKARIIECHFEGMYLEIDG--------REVGVRFIGKFNV 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA + + E+I+ + + +V GR E I + F IVDYAHTPDAL +L
Sbjct: 296 SNLLAVYGASVMLQQQPENILLALSTLQSVSGRLEPIYSPEGFTCIVDYAHTPDALENVL 355
Query: 238 DSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
++ ++ ++ITV G G D+GKRPLM + A +SD ILTSDNP EDP DIL+D
Sbjct: 356 LAIHDVLNGKGKVITVCGAGGNRDKGKRPLMAQEAVKQSDKVILTSDNPRFEDPQDILND 415
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
M G+ + L + D R+ A+R A ++ ++GD+V+VAGKGH
Sbjct: 416 MKEGLNNAQLK----------------KTLTIVD-RKEAIRTACSLAQKGDVVLVAGKGH 458
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
E YQ K F+D+E E Q
Sbjct: 459 EDYQEINGVKHHFNDKEVLYEIFQ 482
>gi|270295453|ref|ZP_06201654.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274700|gb|EFA20561.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 482
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 203/381 (53%), Gaps = 43/381 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M +G + ME SSH +A
Sbjct: 129 FGYKVGLVSTVCNYID-DLPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEL--PKGAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGKVLESHFEGMLLDFNNHELAVRFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N YN+LA + +G ED++ + + V GR + I + + IVDYAHTPDAL
Sbjct: 293 FNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAIRSPKGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K + SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGW-TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ MQ+ + + RR A++ A + + GD+++VA
Sbjct: 413 INDMLAGLDKDDMQKTISITD------------------RREAIKTACMLAQPGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDRE 372
GKGHE YQ K FDD+E
Sbjct: 455 GKGHENYQEIKGVKHHFDDKE 475
>gi|334366952|ref|ZP_08515867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Alistipes sp. HGB5]
gi|313156829|gb|EFR56269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Alistipes sp. HGB5]
Length = 485
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 136/387 (35%), Positives = 196/387 (50%), Gaps = 45/387 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G++S+V Y + G+ + + TTPD V + +M +M G E ME SSH +
Sbjct: 130 LGHKAGLISTVVYKV-GERTVGATHTTPDPVRLNAMMREMADEGCEYCFMECSSHAIVQE 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +F+N+T DH+D+H T EY AK KLF + E + N DD N
Sbjct: 189 RTRGLHFAGGIFSNITHDHLDYHKTFAEYIRAK-KLFFDSLSKEAF-ALTNADDKNGRVM 246
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKF-ELSLFETQVLVNTPHGIL------EISSGLLG 173
+ +N A +H ++ F +++ P G+L E+ GL+G
Sbjct: 247 V--------------QNTAAAIHTYSLRSMADFRCKIVEMHPDGMLLRIDGQEVWVGLVG 292
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
R N YN+LA + +G + +R + V GR EL+ +VDYAHTPDAL
Sbjct: 293 RFNAYNLLAVYGAAVLLGFDRGETLRAASMLHPVSGRFELVRSANGVTAVVDYAHTPDAL 352
Query: 234 SRLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
++ ++ E+ +++I V GC G+ DR KRP M +IA +D + TSDNP +E P
Sbjct: 353 ENVIRTIEEIRTPAQKLIVVCGCGGDRDRTKRPEMAQIAVRYADTAVFTSDNPRHESPEA 412
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
ILD M AG L G R R A+R AV + + GD+++VA
Sbjct: 413 ILDQMAAG-------------------LEPGARFLRIADRAEAIRTAVMLSQPGDILLVA 453
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHETYQI GD K FDDREE R+A
Sbjct: 454 GKGHETYQIVGDVKHPFDDREEVRKAF 480
>gi|329964560|ref|ZP_08301614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides fluxus YIT 12057]
gi|328524960|gb|EGF52012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides fluxus YIT 12057]
Length = 482
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 132/384 (34%), Positives = 204/384 (53%), Gaps = 43/384 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M +G + ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEM--PKSAFSLTNLDDRNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGKVLESHFEGMLLDFNNHELAVRFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I + + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPKGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K + SD I+T+DNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITADNPRFEEPQDI 412
Query: 293 LDDMLAGVGW-TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ +Q+ + + RR A++ A + + GD+++VA
Sbjct: 413 INDMLAGLDKDDIQKTISIAD------------------RREAIKTACMLAQPGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESR 375
GKGHE YQ K FDD+EE +
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEELK 478
>gi|225619572|ref|YP_002720829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brachyspira hyodysenteriae WA1]
gi|225214391|gb|ACN83125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brachyspira hyodysenteriae WA1]
Length = 508
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 133/383 (34%), Positives = 220/383 (57%), Gaps = 32/383 (8%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+T ++ ++ I G ++++ TTP+++ ++++ K L G +VME+SS LA+ RC
Sbjct: 145 KTTLIGTIKNMI-GKTEIKTNLTTPESIDLESIFDKSLKKGISHIVMESSSQALAMNRCD 203
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK--VVNIDDPN---AT 118
+++D A+FTN+T DH+D+H + Y AK KLFS + + + +K +VNID N +
Sbjct: 204 YLNYDTAIFTNITEDHLDYHVDMQNYLKAKLKLFSLLKESSKKKKLAIVNIDTDNFKQIS 263
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL-EISSGLLGRHNI 177
++I + + +VT+ + N+KAD + L+ T+ ++ ++ +LGR NI
Sbjct: 264 NYIKK--LGIKMVTYGI-NEKADYYGKVISLNSKNTEYEFYAKGKLISKVKLSMLGRFNI 320
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQ-AFGVIVDYAHTPDALSRL 236
N L+ +A +E ++ + +V V GR E++ +E+ F V VDY+HTPD+L +
Sbjct: 321 LNSLSILAYVCENKLDIEKSIKAMRKVQ-VEGRFEIVTKEKHPFIVAVDYSHTPDSLENI 379
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L ++L P R+I V GC G+ DR KRP+M +IA +D+ ILT+DN ED I++D+
Sbjct: 380 LVEAKKLNPNRVIAVFGCGGDRDRKKRPIMAEIAEKYADIAILTTDNQRTEDINQIMNDI 439
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
G + N+Y + R+ A+ AV +E D++++AGKGHE
Sbjct: 440 EKG----------FKNNNYKKIID----------RKEAIFEAVKEAKENDIIIIAGKGHE 479
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI DK FDDREE+REAL+
Sbjct: 480 TYQIFPDKTIHFDDREEAREALK 502
>gi|146281463|ref|YP_001171616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas stutzeri A1501]
gi|145569668|gb|ABP78774.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Pseudomonas stutzeri A1501]
Length = 487
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 215/380 (56%), Gaps = 28/380 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G G++ ++ +G +LE R TTPDA+ VQ +A++ G AV ME SSHGL
Sbjct: 126 LGEPCGIIGTLGTGFYG--QLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + ++FD+AVFTNL+RDH+D+HGT E Y AKA+LF P +V+N+DD +
Sbjct: 184 GRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFGV---PGLSCRVINLDDGFGRA 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ + ++++++E+ A ++ + +L + TP G + S LLGR N+ N
Sbjct: 241 LAGE-ERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + + PL++I+ + E++ GR + + V+VDYAHTPDAL ++L +
Sbjct: 300 VLAAVGALLGMDYPLDEILAVLPELEGPAGRMQRLGGGDRPLVVVDYAHTPDALEKVLTA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM ++A +D ++T DNP NE P IL+D+ +G
Sbjct: 360 LRPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPERILEDVRSG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ E + + + R A+ +A D+VV+AGKGHE YQ
Sbjct: 420 --FVNPEAVTFVQG-----------------RAQAIARLIAAANASDVVVLAGKGHEDYQ 460
Query: 360 -IEGDKKEFFDDREESREAL 378
I G++ F D EE+ AL
Sbjct: 461 EIRGERLP-FSDIEEACTAL 479
>gi|336397533|ref|ZP_08578333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella multisaccharivorax DSM 17128]
gi|336067269|gb|EGN55903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella multisaccharivorax DSM 17128]
Length = 483
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 29/374 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G R G++S+V YI G + + TTPD + + L+A+M+ G + ME SSH +
Sbjct: 129 FGYRCGLMSTVCNYIDG-KPVPADHTTPDPIELNELLAEMVKAGCQYAFMECSSHAIHQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 188 RIGGLKFTGGIFTNLTRDHLDYHKTFENYRNAKKAFFDAL--PKSAFAITNADDKNG--M 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I N V T+++ + AD E+ F L H E+ +G+ N+ N+
Sbjct: 244 IMVQNTKATVKTYSIR-QMADFRARIIEMH-FAGMYLDIDGH---EVGVRFIGKFNVSNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA A +G E+I+ + + +V GR E I + F IVDYAHTPDAL +L+++
Sbjct: 299 LAVYAAACMLGKEPEEILVVLSTLHSVSGRLEPIHSPEGFTAIVDYAHTPDALENVLNAI 358
Query: 241 RELAPRR--IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ + +ITV G G D GKRPLM + A +SD I+TSDNP EDP I+DDM+A
Sbjct: 359 HEVLDGKGHVITVCGAGGNRDHGKRPLMAQEAVKQSDKVIITSDNPRFEDPQAIIDDMVA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ +E +K ++ R+ A++ A M ++GD+V+VAGKGHE Y
Sbjct: 419 GLD---KEQMK--------------KVITIVDRKEAIKTACMMAQKGDVVLVAGKGHEDY 461
Query: 359 QIEGDKKEFFDDRE 372
Q K FDD+E
Sbjct: 462 QEIQGVKHHFDDKE 475
>gi|443468306|ref|ZP_21058536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Pseudomonas pseudoalcaligenes KF707]
gi|442897423|gb|ELS24365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Pseudomonas pseudoalcaligenes KF707]
Length = 487
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/388 (34%), Positives = 213/388 (54%), Gaps = 30/388 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ HG+ LES R TTPD + VQ +A + G AV ME SSHGL
Sbjct: 126 LGERCGIVGTLGTGFHGE--LESGRHTTPDPLAVQATLANLKQAGARAVAMEVSSHGLEQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + +DFD+AVFTNL+RDH+D+HG+ E Y AK++LF+ PE +V+N+DD
Sbjct: 184 GRVAALDFDVAVFTNLSRDHLDYHGSMEAYGAAKSRLFAW---PELKARVINLDDEFGRQ 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLK--FELSLFETQVLVNTPHGILEISSGLLGRHNI 177
A+ + + ++++E++ A ++ + F+ Q++ + G+L S LLGR N+
Sbjct: 241 LAAEQHGS-RLFSYSLEDEDAFLYCREAHFDDQGVSAQLVTHQGEGLLR--SPLLGRFNL 297
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA V +A+ PL D+++ + + GR + + + V+VDYAHTPDAL ++L
Sbjct: 298 SNLLAVVGALLAMDYPLADVLQVLPALQGPVGRMQRLGGDDKPLVVVDYAHTPDALEKVL 357
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++R A ++ + GC G+ DRGKRPLM +A +D ++T DNP +EDP I D+
Sbjct: 358 QALRPHARGDLLCLFGCGGDRDRGKRPLMAAVAERLADRVLVTDDNPRSEDPAQIFADIR 417
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
+G G R +A+ +A D+V++AGKGHE
Sbjct: 418 SGFSAPDLAAFVAG-------------------RGLAIAQLIASAGVDDVVLLAGKGHED 458
Query: 358 YQIEGDKKEFFDDREESREALQYVDELH 385
YQ + F D +E+ +AL + H
Sbjct: 459 YQEIAGVRHVFSDLDEAAKALDAWEAPH 486
>gi|431795711|ref|YP_007222615.1| UDP-N-acetylmuramyl tripeptide synthetase [Echinicola vietnamensis
DSM 17526]
gi|430786476|gb|AGA76605.1| UDP-N-acetylmuramyl-tripeptide synthetase [Echinicola vietnamensis
DSM 17526]
Length = 487
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 209/390 (53%), Gaps = 44/390 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G GMLS+V I+ D + + TTPD+V + LMAKM+ G MEASSH +
Sbjct: 130 LGYMVGMLSTVENKIN-DEVIAATHTTPDSVAINRLMAKMVAEGCTHCFMEASSHAIVQE 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + + AVFTN++ DH+D+HGT +EY AK KLF + P+ +VN DD
Sbjct: 189 RMAGLQLSGAVFTNISHDHLDYHGTFDEYIKAKKKLFDEL--PKGAFALVNADDKRGMVM 246
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSL-FETQVLVNTPHGI-LEISS-----GLLG 173
M+N KA + F+ +VL NT G+ L+++ ++G
Sbjct: 247 --------------MQNTKASKRTFGLKYPTDFKAKVLSNTLQGLELDLNGRQAWFRMIG 292
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
N YNI + + V + +G E+++ + + GR + + E IVDYAHTPDAL
Sbjct: 293 EFNAYNITSVLGVALLLGEEEEEVLMQLSSIKGAQGRFDQLHVE-GITAIVDYAHTPDAL 351
Query: 234 SRLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
+L +++ + ++ITVVGC G D+ KRP+M KIATD SD +LTSDNP +EDP++
Sbjct: 352 ENVLKTIQGVRTGGEKVITVVGCGGNRDKAKRPVMAKIATDMSDKVVLTSDNPRDEDPME 411
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL DM GV P+ + + D R+ A++ A M E+GD+++VA
Sbjct: 412 ILRDMETGVN----------------PVAYKKTVVIAD-RKEAIKTACVMAEKGDIILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQYV 381
GKGHETYQ K FDD + +E ++ +
Sbjct: 455 GKGHETYQEIKGVKHPFDDLKIVKELMELI 484
>gi|291278994|ref|YP_003495829.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
[Deferribacter desulfuricans SSM1]
gi|290753696|dbj|BAI80073.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
[Deferribacter desulfuricans SSM1]
Length = 480
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/328 (36%), Positives = 186/328 (56%), Gaps = 24/328 (7%)
Query: 46 EAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPER 105
E VVME SSH L R ++F+ A++TNL+ DH+D+H ++Y N+K+KLF+ ++
Sbjct: 169 EFVVMEVSSHALDQDRVYGINFNYAIYTNLSGDHLDYHKDLDDYFNSKSKLFTEYLNG-- 226
Query: 106 HRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL 165
+VNIDD + D ++T++ N KA+ F+++L +T +++N +
Sbjct: 227 -CGIVNIDDEYGKKLLYLI-KDNEILTYSFNNNKANCFVEHFDMNLDKTDIVLNLLGEKI 284
Query: 166 EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD 225
+ L+G+HNIYN++AA+ +G + I R I+ VPGR E + + + +D
Sbjct: 285 HFETSLVGKHNIYNLMAAILTAHHLGIDHDRITRAIKTFSNVPGRLEKLIYNNIY-IFID 343
Query: 226 YAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPM 285
YAHT DAL +L S+R RRIIT+ GC G+ D+ KRP M K+A SD+ ++TSDNP
Sbjct: 344 YAHTDDALENVLSSLRPFRKRRIITLFGCGGDRDKSKRPRMAKVAEKYSDLVMVTSDNPR 403
Query: 286 NEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEG 345
NEDP I+D +L G G + ++ + RR A++ A+ E
Sbjct: 404 NEDPEKIIDGILKGFG-------------------DKSKVVVEPDRREAIKLALKEAEPE 444
Query: 346 DMVVVAGKGHETYQIEGDKKEFFDDREE 373
D+V++AGKGHE YQ+ K FDD+EE
Sbjct: 445 DIVLIAGKGHEDYQLIKGVKYHFDDKEE 472
>gi|282859042|ref|ZP_06268178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella bivia JCVIHMP010]
gi|424900128|ref|ZP_18323670.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prevotella bivia DSM
20514]
gi|282588210|gb|EFB93379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella bivia JCVIHMP010]
gi|388592328|gb|EIM32567.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prevotella bivia DSM
20514]
Length = 485
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 136/379 (35%), Positives = 198/379 (52%), Gaps = 30/379 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + TTPD + + L+ +M+ G E ME SSH +
Sbjct: 129 FGYKVGLISTVCNYID-DEARPTDHTTPDPIELNQLLGEMVAAGCEYAFMECSSHAIHQH 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F+ VFTNLTRDH+D+H T E YRNAK F + + + N DD N
Sbjct: 188 RIGGLHFEGGVFTNLTRDHLDYHKTFENYRNAKKMFFDSL--SKNAFAITNADDKNG--M 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
I N + T++M+ + AD E + V+ E+ +G+ N+ N+
Sbjct: 244 IMVQNCKANIKTYSMQ-RMADFRAKIIECHFEGMYLEVDGK----EVGVQFIGKFNVSNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA I +G +DI+ + + +V GR + + + F IVDYAHTPDAL +L ++
Sbjct: 299 LAVYGTAIMLGKSQDDILLALSTLKSVNGRLDPVHSPEGFTAIVDYAHTPDALENVLGAI 358
Query: 241 REL---APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ ++ITV G G D+GKRPLM + A +SD ILTSDNP EDP I+DDM+
Sbjct: 359 HDVLEGKNGKVITVCGAGGNRDKGKRPLMAQEAVKQSDTVILTSDNPRFEDPQAIIDDMV 418
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AG+ ++ + L + D RR A+R A M ++GD+++VAGKGHE
Sbjct: 419 AGLDANQRKKV----------------LTIVD-RREAMRTAAMMAKKGDVILVAGKGHED 461
Query: 358 YQIEGDKKEFFDDREESRE 376
YQ K FDD E RE
Sbjct: 462 YQDIQGVKHHFDDHEVLRE 480
>gi|219870386|ref|YP_002474761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Haemophilus parasuis SH0165]
gi|219690590|gb|ACL31813.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
SH0165]
Length = 496
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 210/387 (54%), Gaps = 35/387 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G ++ ++ ++ ++G + E+ TT AV +Q+ +A + G + ME SSHGLA
Sbjct: 135 LGGKSAVMGTIGNGLYGQVQ-EAVNTTGSAVEIQHNLANFVELGADFCAMEVSSHGLAQY 193
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R +DFD+A+FTNL+RDH+D+H T EEY AK +LF + ++V+N DD +
Sbjct: 194 RAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGEL---SSKQQVINADDEIGRKW 250
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQ---VLVNTPHGILEISSGLLGRHNI 177
+A+ P+ V+ + + +K + F Q + + G E+ S L+G N+
Sbjct: 251 LAK-LPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFESSWGNGELKSRLIGAFNV 309
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE-LIDEEQAFG---VIVDYAHTPDAL 233
N+L A A +A+G L+ +V ++ V GR E LI EE A VIVDYAHTPDAL
Sbjct: 310 SNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMECLISEENAEESPMVIVDYAHTPDAL 369
Query: 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+ LD+ R + V GC G+ D GKRPLM +IA +D I+T DNP EDP I
Sbjct: 370 EKALDAARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIVTDDNPRTEDPDVIF 429
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPP--LPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
+D++ G + P + + H IR+ A+ A+A E D++++A
Sbjct: 430 NDVMKG---------------FRKPKAVQSMH------IRQYAIEQAIAQAEPKDVILIA 468
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI G KK F D+E +R+ L
Sbjct: 469 GKGHEDYQIIGTKKYHFSDQEWARKFL 495
>gi|188994487|ref|YP_001928739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Porphyromonas gingivalis ATCC 33277]
gi|188594167|dbj|BAG33142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Porphyromonas gingivalis ATCC 33277]
Length = 487
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/380 (36%), Positives = 203/380 (53%), Gaps = 42/380 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLE-SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
MG + G++S+V Y+ D++ E + TTPD + + L +M G E ME SSH A
Sbjct: 129 MGYKAGLVSTVCNYV--DDRSEPTTHTTPDPLALNALFRRMADAGCEYAFMEVSSHAAAQ 186
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
R +DFD +FTNLTRDH+D+HG+ EY AK F + + +VN DD N
Sbjct: 187 KRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGL--GAQAFALVNADDKNGLV 244
Query: 120 FIAQGNPDVPVVTFA---MENKKADV---HPLKFELSLFETQVLVNTPHGILEISSGLLG 173
+ N V T+A M N +A + H ++ + + +V V L+G
Sbjct: 245 MVQ--NTRARVCTYALKSMANYRAKIVERHIDGMDMYMDDREVFVR-----------LVG 291
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
N YN+L +G E+++R + E+ +V GR + + + IVDYAHTPDAL
Sbjct: 292 DFNAYNLLCVYGASCELGQDREEVLRILSELTSVDGRFQTFTSKDGYVAIVDYAHTPDAL 351
Query: 234 SRLLDSVRELA-PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+LD++R LA ++ITVVG G D+GKRP+M K A +S+ ILTSDNP +E+P +I
Sbjct: 352 VNVLDTIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILTSDNPRDEEPQEI 411
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ +M +G + ++ K L + D R A+R A + E+GD V++AG
Sbjct: 412 IQEM--AIGLSTEDRKK--------------TLLITD-RAEAIRTACMLAEKGDFVLIAG 454
Query: 353 KGHETYQIEGDKKEFFDDRE 372
KGHETYQ K FDDRE
Sbjct: 455 KGHETYQEIRGVKHHFDDRE 474
>gi|456864512|gb|EMF82911.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira weilii serovar Topaz str. LT2116]
Length = 507
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/380 (35%), Positives = 204/380 (53%), Gaps = 25/380 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ GD+ +++ TTPDA + ++ +M G V MEASSHGL LGR
Sbjct: 147 GRSCGLIGTIGVKF-GDHLIDTGYTTPDASSLNLILKQMKDEGVTTVFMEASSHGLKLGR 205
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ VFTNLT+DH+DFH E+Y +K +LF + + V++ P
Sbjct: 206 IDGISLKAGVFTNLTQDHLDFHSDMEDYFKSKFRLFEILDVSKSPFAVLDYASPGGNKLY 265
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQ-VLVNTPHGILEISSGLLGRHNIYNI 180
+ ++PV A++ + + L+L T VL + + IS+ LLG N+ N
Sbjct: 266 QKIKNNLPVK--ALDGIEGECKVSDLSLTLQGTSYVLSLSGNRRQTISTNLLGSFNVRNT 323
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDS 239
A G+ +G E ++ ++E+ +PGR ++I ++++ +VDYAHTPDAL ++ S
Sbjct: 324 ALAFLTGLGLGLDQEGMLSSLKEIPQIPGRFQIIYSKDRSRMAVVDYAHTPDALENIIRS 383
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
VR P+R+IT+ GC G+ DR KRP M +IA + SD ILTSDNP E P ILD++ +G
Sbjct: 384 VRNSRPKRLITLFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEIQSG 443
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGHETY 358
+ P G L ++ R A+ VA+ EG ++VAGKGHE Y
Sbjct: 444 ----------------FSP---GFTPLLREVDRARAISKGVAVLPEGGCLLVAGKGHEEY 484
Query: 359 QIEGDKKEFFDDREESREAL 378
QI G +K F D EE R+A
Sbjct: 485 QIIGKEKRHFSDVEEVRKAF 504
>gi|389805945|ref|ZP_10203089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhodanobacter thiooxydans LCS2]
gi|388446576|gb|EIM02604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhodanobacter thiooxydans LCS2]
Length = 520
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 144/371 (38%), Positives = 191/371 (51%), Gaps = 25/371 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R + ++ +HG E RTTPDAV VQ L+A+ V ME SSH L GR
Sbjct: 156 GHRAASIGTLGAGVHGQLH-EGERTTPDAVTVQALLAEFRDADVSHVAMEVSSHALEQGR 214
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ VD+++A FTNLTRDH+D+HG+ + Y AKAKLF+ P +NIDD
Sbjct: 215 VAAVDYEVAAFTNLTRDHLDYHGSMQAYGAAKAKLFAW---PGLRSAAINIDDAFGRELA 271
Query: 122 AQGNPDVPVVTFAME-NKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
Q DV + F+M + +A+V S L+ TP G + S L+GR N+ N+
Sbjct: 272 GQLPADVERLRFSMAGDDEAEVAASSIVSSAEGLAFLLRTPWGTRAVRSQLIGRFNVANL 331
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG-VIVDYAHTPDALSRLLDS 239
LA VA A+G P IV + ++ V GR + Q V+VDYAHTPDAL + L +
Sbjct: 332 LAVVACLGALGEPFARIVEVVAQLQPVNGRMSRLGGVQGQPLVVVDYAHTPDALEQALTA 391
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
VR ++I V GC GE D GKRPLM IA +DV I+T DNP ED I+ ++AG
Sbjct: 392 VRAHCAGKLICVFGCGGERDAGKRPLMGAIAARLADVAIVTDDNPRAEDGDAIVAQIVAG 451
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ + E D R A+ A+ GD V++AGKGHETYQ
Sbjct: 452 MAAARAMAV---ERD----------------RATAIADALQFARPGDAVLIAGKGHETYQ 492
Query: 360 IEGDKKEFFDD 370
K FDD
Sbjct: 493 EGAAGKRPFDD 503
>gi|317154469|ref|YP_004122517.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfovibrio
aespoeensis Aspo-2]
gi|316944720|gb|ADU63771.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
aespoeensis Aspo-2]
Length = 506
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/384 (35%), Positives = 199/384 (51%), Gaps = 30/384 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G++ G+L +V+Y G +++P TTPD M+ L+ M + VME SSH L R
Sbjct: 142 GIKVGVLGTVNYRWPG-FVMDAPLTTPDCWMIHELLYNMKKADVDVAVMEVSSHALDQYR 200
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF- 120
+ +DFD AV TN+T+DH+D+HG E Y AK +LFS + P R V+N +DP
Sbjct: 201 VAGLDFDAAVLTNVTQDHLDYHGDMETYFQAKTRLFSTYLRPGR-AGVINFNDPYGRRLL 259
Query: 121 ------IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGR 174
I G D +VT + +K V L+ Q+ + + S L+G
Sbjct: 260 TSTEGGIGYGIGDSSLVTHEVGDKPM-VQGRILSLTGQGMQIETSYKGKSWVVESPLIGA 318
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LAA AVG+ +G +D+ +++ VPGR E + +Q + VDYAHTPDAL
Sbjct: 319 FNAMNLLAAQAVGLQLGLNCKDMCV-LKDFPGVPGRLERVINDQGLDIFVDYAHTPDALE 377
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+ +++ L +R+ITV GC G+ DR KRPLM K +DV +LTSDNP +E P I+D
Sbjct: 378 NVQHTLKSLDFKRLITVFGCGGDRDRAKRPLMAKAVARYADVAVLTSDNPRSEKPEAIMD 437
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
D P L + H R+ A+ AVA + GD++++AGKG
Sbjct: 438 DA-------------------RPGLARAAVVLEHPDRQTAITMAVAGMQPGDVLLIAGKG 478
Query: 355 HETYQIEGDKKEFFDDREESREAL 378
HE YQ F D+E + A+
Sbjct: 479 HEDYQQIAGTTIHFSDKEAALRAI 502
>gi|359728406|ref|ZP_09267102.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Leptospira weilii str. 2006001855]
Length = 512
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 204/383 (53%), Gaps = 28/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ GD +++ TTPDA + ++ +M G V MEASSHGL LGR
Sbjct: 149 GRSCGLIGTIGVKF-GDRLIDTGYTTPDASFLNLVLKQMKDEGVTTVFMEASSHGLKLGR 207
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF- 120
+ VFTNLT+DH+DFH E+Y +K +LF + + V++ P
Sbjct: 208 IGGISLKAGVFTNLTQDHLDFHSDMEDYFKSKFRLFEILDVSKSPFAVLDYASPGGNELY 267
Query: 121 --IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQ-VLVNTPHGILEISSGLLGRHNI 177
I PD+PV A++ + + L+L T VL + + IS+ LLG N+
Sbjct: 268 QKIRNNFPDLPVK--ALDGIEGECKVSDISLTLQGTSYVLSLSGNRRQTISTNLLGSFNV 325
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRL 236
N A G+ +G E ++ ++E+ +PGR +++ ++++ +VDYAHTPDAL +
Sbjct: 326 RNTALAFLTGLDLGLDQERMLSSLKEIPQIPGRFQIVYSKDRSRMAVVDYAHTPDALENI 385
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ SVR P+R+IT+ GC G+ DR KRP M +IA + SD ILTSDNP E P ILD++
Sbjct: 386 IRSVRNSRPKRLITLFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEI 445
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGH 355
+G + P G L ++ R A+ VA+ EG ++VAGKGH
Sbjct: 446 QSG----------------FSP---GFTPLLREVDRARAISKGVAVLPEGGCLLVAGKGH 486
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E YQI G +K F D EE R+A
Sbjct: 487 EEYQIIGKEKRHFSDVEEVRKAF 509
>gi|404403186|ref|ZP_10994770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas fuscovaginae UPB0736]
Length = 487
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/380 (35%), Positives = 211/380 (55%), Gaps = 28/380 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G G+L ++ HG L S TTPD + VQ +A + + G +AV ME SSHGL
Sbjct: 126 LGQHCGILGTLGSGFHG--ALNSGMLTTPDPIAVQATLADLKNAGAKAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNAT 118
GR S + FD+AV TNL+RDH+D+HGT + Y AKAKLF D R +V+N+DD
Sbjct: 184 GRVSALAFDVAVLTNLSRDHLDYHGTMQAYGAAKAKLF----DWANLRCRVINLDDDFGR 239
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
A+ + ++T+++++ A ++ + S + + TPHG + S LLGR N+
Sbjct: 240 QLAAR-EAESRLITYSLQDSAAYLYCRDAQFSDEGVRATLVTPHGEHHLRSTLLGRFNLS 298
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N+LAAV + + L++I+R + +++ GR + + V+VDYAHTPDAL ++L
Sbjct: 299 NVLAAVGALLGLDYALDEILRVLPQLEGPAGRMQRLGGGTRPLVVVDYAHTPDALEKVLM 358
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
++R A ++ + GC G+ DRGKRPLM ++A +D ++T DNP EDP I DD+
Sbjct: 359 ALRPHAKGQLHCLFGCGGDRDRGKRPLMAELAERLADSVLVTDDNPRTEDPQQIFDDIRP 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G++ + +++ R VA+ +A D++V+AGKGHE Y
Sbjct: 419 --GFSTPDAVRFVSG-----------------RGVAIAELIAAARADDVLVLAGKGHEDY 459
Query: 359 QIEGDKKEFFDDREESREAL 378
Q ++ F D E+ +AL
Sbjct: 460 QEINGERHAFSDLAEATKAL 479
>gi|387813213|ref|YP_005428695.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381338225|emb|CCG94272.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 494
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 192/377 (50%), Gaps = 23/377 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G+L ++ Y + G + + TTPD V V ++ ++ + G A VME SSH L GR
Sbjct: 134 GTPCGLLGTLGYGMPGSIE-SATHTTPDVVQVNRVLNRIRNEGGRAAVMEVSSHALDQGR 192
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ AVFTNLTRDH+D+HG+ E Y AKA+LF R E H V+N DDP
Sbjct: 193 VDNLTMTGAVFTNLTRDHLDYHGSMEAYGEAKARLFLR---EELHFSVINFDDPFGRQLY 249
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
Q V +++ + ++ +F + V+ G +++ LLG N N+L
Sbjct: 250 GQLEGQCDRVRYSLHEAQTELWLKEFTPTASGFSARVDGQWGEFDLTVPLLGSFNASNVL 309
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA+A + +G P+E V + E+ PGR E V+VDYAHTPDAL+ L+++R
Sbjct: 310 AALATVLTLGVPVERAVSVVRELSPPPGRLERFTGPTGKHVVVDYAHTPDALANALEALR 369
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
R+I V GC G+ D GKRP M K A ++D I+T DNP E P I+ D+ AG
Sbjct: 370 PHTRGRLICVFGCGGDRDPGKRPEMAKEAEKRADYVIVTDDNPRTEQPERIVSDISAGFT 429
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
G +HD R A+ A+ M E D+V++AGKGHE YQ
Sbjct: 430 QA------------------GRWQVIHD-RAQAIAEALGMANEDDLVLIAGKGHEAYQEI 470
Query: 362 GDKKEFFDDREESREAL 378
+K F D E+ R L
Sbjct: 471 RGQKLPFSDAEQVRHLL 487
>gi|282889754|ref|ZP_06298293.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500328|gb|EFB42608.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 493
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 208/379 (54%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+ L G++ ++ Y I G + ++ TTPD +++ +M+H G +A VME +SH L
Sbjct: 128 LNLPCGLIGTIEY-ILGRYRYKASHTTPDVHSNHHMLREMVHQGCQAAVMEVTSHALDQK 186
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM--VDPERHRKVV-NIDDPNA 117
R +D+DIA++TNLT+DH+D+H E Y AK KLF ++ V ++ ++++ N+D P
Sbjct: 187 RVEHIDYDIAIYTNLTQDHLDYHQNMECYAAAKRKLFLQLDQVPSKKSKQIIANLDCPWF 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P+ TF +++ AD+ T + ++ L+GR NI
Sbjct: 247 ETILK--GIKTPIFTFGIDSP-ADLRACPTSFGPTGTHIDLHYQGRSYSTFFPLIGRFNI 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+AVG+ LE ++ ++ PGR E I + + VD+AHT DAL + L
Sbjct: 304 YNCLAAIAVGLTRKITLEKLISLAQQFPPPPGRLEPIQNDLDLNLFVDFAHTEDALYKAL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ + EL +IITV GC G+ D+ KRP M + + SD+TI+TSDNP +EDPL I+ ++
Sbjct: 364 ECLSELKKGKIITVFGCGGDRDKTKRPKMAQASASFSDLTIVTSDNPRSEDPLKIIQEI- 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+++Q D Y P+ R A+ A+ GD+++VAGKGHET
Sbjct: 423 -AEGFSLQ--------DNYIVQPD---------RFSAIAFAIEKANPGDIILVAGKGHET 464
Query: 358 YQIEGDKKEFFDDREESRE 376
QI FDDR+ ++E
Sbjct: 465 TQIFAHHTIEFDDRKIAQE 483
>gi|410421659|ref|YP_006902108.1| murein biosynthesis bifunctional protein [Bordetella bronchiseptica
MO149]
gi|408448954|emb|CCJ60640.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica MO149]
Length = 945
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/390 (35%), Positives = 199/390 (51%), Gaps = 35/390 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG G + ++ + L TTPD + + +A+M G AV +EASS G+ G
Sbjct: 136 MGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQG 195
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + +A FTNLTRDH+D+HGT + Y AKA LF P+ VVN DDP
Sbjct: 196 RLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQW---PDLQAAVVNADDPAGERL 252
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+A P ++++ ADVH + + + P G +I + LLG+HNI N+
Sbjct: 253 LAS-LPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNL 311
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE---------LIDEEQAFGVIVDYAHTPD 231
L +G PL I R + + V GR + L Q V+VDYAHTPD
Sbjct: 312 LLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPD 371
Query: 232 ALSRLLDSVRELA---PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
AL+R L ++R +A R++ V GC GE D GKRP M +IA +++D ++TSDNP +E
Sbjct: 372 ALARALTALRPVAHARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSES 431
Query: 289 PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348
P I+D +LAG+ P G R + R +A+ + D++
Sbjct: 432 PQGIIDQILAGI-------------------PAGMRAAVQPDRALAIMQTLWSAAPDDVI 472
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREAL 378
++AGKGHETYQ G +K FDDR+ +R AL
Sbjct: 473 LLAGKGHETYQDIGGRKLPFDDRQWARLAL 502
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 6/183 (3%)
Query: 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDV 128
+A+ TN R+H +F T E + + + PE V D+P A +
Sbjct: 665 VALVTNAQREHQEFMHTVEAVAHENGAVIGAL--PEDGVAVYPGDEPYAAIWDKLAGARR 722
Query: 129 PVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGI 188
V+ F ++ DV+ + TQ V TP G E+ + G HN+ N LAA+A G+
Sbjct: 723 -VLRFGLQ-PGLDVYAERVVTQAHGTQCGVVTPAGSAELDLPVPGLHNLRNALAAIACGL 780
Query: 189 AVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVREL-APR 246
A GAPL + + AV GR + +I D Y PD+ +D + L APR
Sbjct: 781 AAGAPLHTCIVALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPR 840
Query: 247 RII 249
++
Sbjct: 841 ALV 843
>gi|357060974|ref|ZP_09121736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Alloprevotella rava F0323]
gi|355375509|gb|EHG22795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Alloprevotella rava F0323]
Length = 485
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 205/386 (53%), Gaps = 41/386 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+ S+V YI D + + TTPD + + L+A+M+ G E ME SSH +
Sbjct: 130 FGHKVGLCSTVCNYID-DQAVSADHTTPDPITLNELLARMVEAGCEYAFMECSSHAIQQK 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F A+FTNLTRDH+D+H T E YR+AK K+F +D + + N DD N
Sbjct: 189 RIGGLHFVGALFTNLTRDHLDYHKTFENYRDAK-KMFFDGLDKDAF-AITNADDRNGMVM 246
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N + T++ ++ F+ ++L + G+L E+S +GR
Sbjct: 247 VQ--NTKATIKTYSTRT-----------VADFKGRILEESLEGMLLDIDGREVSVRFIGR 293
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+ N+LA + +G ++++R + + V GR E I ++ IVDYAHTPDAL
Sbjct: 294 FNVSNLLAVYGAAVMLGQEPQEVLRVMSTLHPVNGRFEAIRSKEGVSAIVDYAHTPDALI 353
Query: 235 RLLDSVRELAPRR--IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L ++ E+ + +ITV G G D GKRPLM + A ++SD I+TSDNP EDP I
Sbjct: 354 NVLTTINEIVKGKASVITVCGAGGNRDAGKRPLMAQEAANRSDRVIITSDNPRFEDPQVI 413
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG+ ++ + + + D RR A+R A M + GD+++VAG
Sbjct: 414 INDMLAGLDAEQKKKV----------------ISIVD-RREAIRAAAMMAQPGDVILVAG 456
Query: 353 KGHETYQIEGDKKEFFDDREESREAL 378
KGHE YQ K FDD EE R A
Sbjct: 457 KGHEPYQEIKGVKHHFDDHEEIRAAF 482
>gi|383451565|ref|YP_005358286.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Flavobacterium indicum GPTSA100-9]
gi|380503187|emb|CCG54229.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Flavobacterium indicum GPTSA100-9]
Length = 489
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 209/386 (54%), Gaps = 41/386 (10%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+LS+V + N+ ++ TTPD++ + + + +M+ G E ME SSHG+ R
Sbjct: 133 GYKVGLLSTVKIMV-DTNEHKATHTTPDSLTINHYLNEMVEVGCEFCFMEVSSHGIHQKR 191
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ F+ VFTNL+ DH+D+H T EYR+ K F ++ P+ + N+DD N +
Sbjct: 192 TESLHFEGGVFTNLSHDHLDYHNTFAEYRDVKKSFFDQL--PKTAFALTNVDDKNGVVML 249
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGRH 175
N T+A++ + ++ Q+L N G+L E+ L+G
Sbjct: 250 Q--NTAARKRTYALKT-----------YAEYKAQILENQLSGLLLKVNNEEVWVKLIGSF 296
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N YN+LA V + +G ++ +R + E+++V GR + + VI+DYAHTPDAL
Sbjct: 297 NAYNVLAIYGVAVELGIESQEALRLLSELESVSGRFQYFISDSNVTVIIDYAHTPDALEN 356
Query: 236 LLDSVRELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L+++ ++ + ++ITVVGC G+ D+ KRP+M A+ SD I TSDNP EDP IL
Sbjct: 357 VLNTIADIRTKNEQLITVVGCGGDRDKTKRPIMANCASSLSDKAIFTSDNPRTEDPQVIL 416
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
++M AGV Q + K + + D R+ A++ A M GD++++AGK
Sbjct: 417 EEMEAGV--EAQNFKK--------------TISILD-RKQAIKTACQMAHSGDIILIAGK 459
Query: 354 GHETYQIEGDKKEFFDDREESREALQ 379
GHETYQ + FDD + ++E ++
Sbjct: 460 GHETYQEINGVRHDFDDMQIAKELMR 485
>gi|345881466|ref|ZP_08832984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella oulorum F0390]
gi|343919431|gb|EGV30178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella oulorum F0390]
Length = 484
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 197/377 (52%), Gaps = 35/377 (9%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D + + TTPD + + L+++M+ G E ME SSH +
Sbjct: 129 FGYKVGLLSTVCNYIE-DEVIPADHTTPDPIELNELLSQMVAAGCEYAFMECSSHAIHQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 188 RIGGLTFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGL--PKEAFAITNADDKNGLVM 245
Query: 121 IAQGNPDVPVVTFAME---NKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ N V T++++ + KA + FE E E+ +G+ N+
Sbjct: 246 VQ--NTKATVKTYSVQAPADFKARILECHFEGMYLEIDG--------REVGVQFIGKFNV 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA +G E+I+ + + +V GR E I ++ + IVDYAHTPDAL +L
Sbjct: 296 SNLLAVYGAARMLGKSPEEILLVMSTLHSVSGRLEPIHSKEGYTAIVDYAHTPDALENVL 355
Query: 238 DSVRELAPRR--IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
++ E+ + +ITV G G D+GKRPLM + A +SD I+TSDNP EDP DI++D
Sbjct: 356 KAIHEVLNGKGHVITVCGAGGNRDKGKRPLMAQEAVKQSDKVIITSDNPRFEDPQDIIND 415
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
MLAG+ P L + D RR A+R A M ++ D+++VAGKGH
Sbjct: 416 MLAGLN----------------PQQMKKVLAIVD-RREAIRTACMMAQKEDVILVAGKGH 458
Query: 356 ETYQIEGDKKEFFDDRE 372
E YQ K FDD+E
Sbjct: 459 ENYQEIKGVKHHFDDKE 475
>gi|239617758|ref|YP_002941080.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
19.5.1]
gi|239506589|gb|ACR80076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
19.5.1]
Length = 497
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 209/382 (54%), Gaps = 36/382 (9%)
Query: 4 RTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
++ ++ +V I GD +P+ TTP + M + E VME SSHGLA+ R
Sbjct: 135 KSALVGTVKNVI-GDYVSTNPKNTTPGPATLAKYMKMAVEKNLEYFVMEVSSHGLAMHRV 193
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122
+ FD+AV TN+TRDH+DFH + E+Y K ++F+ ++ P + VVN D+ N
Sbjct: 194 DGMRFDVAVLTNVTRDHLDFHASFEDYYRTKLRIFN-LLKPV-GKAVVNSDNVNI----- 246
Query: 123 QGNPDVP---VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL-EISSGLLGRHNIY 178
G+ +P ++T+ N+ +D E+S V TP G ++ + L+G HN Y
Sbjct: 247 -GDIKLPRDKIITYGFGNE-SDFRMENLEISRTGMYFTVETPFGSKHKVYTRLVGEHNAY 304
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYAHTPDALSRL 236
N+ A +A ++ E I+ I VPGR E ++E +G V+VD+AHTPDAL +L
Sbjct: 305 NVTATIATMESLNYDTEHILEAISTFSGVPGRFEFVEEATKYGFDVLVDFAHTPDALEKL 364
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L + ++L+ RII V G G++D+GKRPLM +IA+ +DV ILTSD+P EDP +IL+D+
Sbjct: 365 LKTAKKLSEGRIIIVFGAGGDADKGKRPLMGEIASRFADVVILTSDDPKKEDPEEILNDI 424
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG+ T Y +P+ RR A+ A+ + D V++AG+GHE
Sbjct: 425 EAGISKTKP----------YLVIPD---------RREAISVALTLANRQDTVLIAGRGHE 465
Query: 357 TYQIEGDKKEFFDDREESREAL 378
YQ D F+D+ +E L
Sbjct: 466 DYQAFADYVVAFNDKRVVKEIL 487
>gi|338175965|ref|YP_004652775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelateligase [Parachlamydia acanthamoebae
UV-7]
gi|336480323|emb|CCB86921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelateligase [Parachlamydia acanthamoebae
UV-7]
Length = 493
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 208/379 (54%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+ L G++ ++ Y I G + ++ TTPD +++ +M+H G +A VME +SH L
Sbjct: 128 LNLPCGLIGTIEY-ILGRYRYKASHTTPDVHSNHHMLREMVHQGCQAAVMEVTSHALDQK 186
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM--VDPERHRKVV-NIDDPNA 117
R +D+DIA++TNLT+DH+D+H E Y AK KLF ++ V ++ ++++ N+D P
Sbjct: 187 RVEHIDYDIAIYTNLTQDHLDYHQNMECYAAAKRKLFLQLDQVPSKKSKQIIANLDCPWF 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P+ TF +++ AD+ T + ++ L+GR NI
Sbjct: 247 ETILK--GIKTPIFTFGIDSP-ADLRACPTSFGPTGTHIDLHYQGRSYSTFFPLIGRFNI 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN LAA+AVG+ LE ++ ++ PGR E I + + VD+AHT DAL + L
Sbjct: 304 YNCLAAIAVGLTRKITLEKLISLAQQFPPPPGRLEPIQNDLDLNLFVDFAHTEDALYKAL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ + EL +IITV GC G+ D+ KRP M + + SD+TI+TSDNP +EDPL I+ ++
Sbjct: 364 ECLSELKKGKIITVFGCGGDRDKTKRPKMAQASASFSDLTIVTSDNPRSEDPLKIIQEI- 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G+++Q D Y P+ R A+ A+ GD+++VAGKGHET
Sbjct: 423 -AEGFSLQ--------DNYIVQPD---------RFSAIAFAIEKANPGDIILVAGKGHET 464
Query: 358 YQIEGDKKEFFDDREESRE 376
QI FDDR+ ++E
Sbjct: 465 TQIFAHHTIEFDDRKIAQE 483
>gi|399519375|ref|ZP_10760170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas pseudoalcaligenes CECT 5344]
gi|399112471|emb|CCH36728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas pseudoalcaligenes CECT 5344]
Length = 487
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 130/375 (34%), Positives = 203/375 (54%), Gaps = 25/375 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ HG + + TTPD V VQ +A + G AV ME SSHGL GR
Sbjct: 127 GQRCGIVGTLGNGFHGALE-QGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLDQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ ++FD+AVFTNL+RDH+D+HG+ + Y AKAKLF+ P +V+N+DD
Sbjct: 186 VAALEFDVAVFTNLSRDHLDYHGSMQAYGAAKAKLFAW---PNLRCRVINLDDAFGCELA 242
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
AQ + + ++ +++ + A V+ + + + TP G + S LLGR N+ N+L
Sbjct: 243 AQTH-ESRLIGYSLSDASAFVYCSEAHFDDHGVRARLVTPRGEGMLRSNLLGRFNLSNLL 301
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
A V + + L++I++ + ++ GR + + V+VDYAHTPDAL ++L+++R
Sbjct: 302 AVVGALLGLDYGLDEILKVLPQLQGPAGRMQRLGGGDKPLVVVDYAHTPDALEKVLEAMR 361
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
R++ + GC G+ DRGKRPLM +A +D +T DNP E+P I+ D+ AG
Sbjct: 362 PHVEGRLVCLFGCGGDRDRGKRPLMAAVAERLADAVWVTDDNPRTEEPAQIVADIRAGFK 421
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ-I 360
Q +G D A+ +A E D++V+AGKGHE YQ I
Sbjct: 422 APEQVQFIHGRGD-------------------AIARLIAQAEAADVLVLAGKGHEDYQEI 462
Query: 361 EGDKKEFFDDREESR 375
G ++ F D E ++
Sbjct: 463 MGVRQPFSDLIEANK 477
>gi|194335056|ref|YP_002016916.1| UDP-N-acetylmuramyl tripeptide synthetase [Prosthecochloris
aestuarii DSM 271]
gi|194312874|gb|ACF47269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris
aestuarii DSM 271]
Length = 499
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 145/387 (37%), Positives = 202/387 (52%), Gaps = 33/387 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G++TG + + I GD + RTTP+A+ + L KM++ G EAVVME SSH L L R
Sbjct: 133 GVKTGYIGTGQALI-GDESIVLERTTPEAMDLHALFRKMVNCGCEAVVMEVSSHALVLHR 191
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ F AVFTNLT +H+DFH T +EY +AK LF R V P+ +VN DD +
Sbjct: 192 TEGISFYGAVFTNLTPEHLDFHATMDEYGSAKQILF-RQVAPDGF-GIVNADDAWGSMMA 249
Query: 122 AQGNPD------VPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+ V F N V E + + V V S L G
Sbjct: 250 GAFSGSRLFCCTVGSQVFGCTNGSV-VRARDIEARMDGSSVTVQMNGRACRASFLLPGLF 308
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALS 234
N+ N+L ++ G+A+G LE + +V +V GR E + D+ F IVDYAHTPDAL
Sbjct: 309 NVMNMLEILSAGVAMGLSLETAAASVADVVSVEGRMEPVSDDGGLFSAIVDYAHTPDALE 368
Query: 235 RLLDSVRELAP--RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+++ ++ E+ P +I V GC G+ DR KRPLM IA +D ILTSDNP +EDP +I
Sbjct: 369 KVIGALNEVRPADSSLIVVFGCGGDRDRSKRPLMGGIAAAGADHVILTSDNPRSEDPEEI 428
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
LD + +G+ T +++ + R A+ C V M GD++++AG
Sbjct: 429 LDAIASGI--TEGSFMRIAD------------------RADAIVCGVQMLRPGDLLLIAG 468
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHE YQ G +K +F DRE ALQ
Sbjct: 469 KGHECYQESGGRKSYFSDREVVARALQ 495
>gi|34540385|ref|NP_904864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Porphyromonas gingivalis W83]
gi|419970301|ref|ZP_14485802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Porphyromonas gingivalis W50]
gi|46576910|sp|Q7MWM7.1|MURE_PORGI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|34396698|gb|AAQ65763.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Porphyromonas gingivalis W83]
gi|392611114|gb|EIW93865.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Porphyromonas gingivalis W50]
Length = 487
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/380 (36%), Positives = 203/380 (53%), Gaps = 42/380 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLE-SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
MG + G++S+V Y+ D++ E + TTPD + + L +M G E ME SSH A
Sbjct: 129 MGYKAGLVSTVCNYV--DDRSEPTTHTTPDPLALNALFRRMADAGCEYAFMEVSSHAAAQ 186
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
R +DFD +FTNLTRDH+D+HG+ EY AK F + + +VN DD N
Sbjct: 187 KRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGL--GAQAFALVNADDKNGLV 244
Query: 120 FIAQGNPDVPVVTFA---MENKKADV---HPLKFELSLFETQVLVNTPHGILEISSGLLG 173
+ N V T+A M N +A + H ++ + + +V V L+G
Sbjct: 245 MVQ--NTRARVCTYALKSMANYRAKIVERHIDGMDMYMDDREVFVR-----------LVG 291
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
N YN+L +G E+++R + E+ +V GR + + + IVDYAHTPDAL
Sbjct: 292 DFNAYNLLCVYGASCELGQDREEVLRILSELTSVDGRFQTFTSKDGYVAIVDYAHTPDAL 351
Query: 234 SRLLDSVRELA-PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+LD++R LA ++ITVVG G D+GKRP+M K A +S+ ILTSDNP +E+P +I
Sbjct: 352 INVLDTIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILTSDNPRDEEPQEI 411
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ +M +G + ++ K L + D R A+R A + E+GD V++AG
Sbjct: 412 IQEM--AIGLSTEDRKK--------------TLLITD-RAEAIRTACMLAEKGDFVLIAG 454
Query: 353 KGHETYQIEGDKKEFFDDRE 372
KGHETYQ K FDDRE
Sbjct: 455 KGHETYQEIRGVKHHFDDRE 474
>gi|384134171|ref|YP_005516885.1| UDP-N-acetylmuramyl tripeptide synthetase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339288256|gb|AEJ42366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 493
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 212/384 (55%), Gaps = 34/384 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+ LR GMLSSVS G + + TT +A + + + +M+ G V+E SSHG+
Sbjct: 129 VSLRVGMLSSVSNET-GLRTVPAELTTLEAPKLHHALREMVDAGCTHAVIEVSSHGIVQH 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S+VDFD+A+FTNLTR+H+DFHG+ E Y AKA+LFS + E+ V+N DDP A
Sbjct: 188 RTSDVDFDLAIFTNLTREHLDFHGSMENYAAAKARLFSGL-SAEKLGAVLNRDDPYAD-- 244
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLL---GRHNI 177
+ N P++T+ + + DV E + T++ V P G E G+L G +N+
Sbjct: 245 VMAENCTAPIITYGLHS--GDVRGRVVETDGWHTRLSVRLPDG--EEFEGILPHPGVYNV 300
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LA V A+G P++ I + + +VPGR +I E+ V+VDYAHTPDAL +LL
Sbjct: 301 YNLLAVVGAAHALGLPVDAIQGALSTLPSVPGRMHVIRPERGPTVVVDYAHTPDALYQLL 360
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ R+ R+ V G GE D+GKR M IA +D I+T+DNP +E+P I D++L
Sbjct: 361 NTARQWTRGRVWLVFGGRGERDKGKRSEMGFIAASMADEVIITTDNPYSEEPARIADEIL 420
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI---RRVAVRCAVAMGEEGDMVVVAGKG 354
+G YG DI R A+ AV +GD+V++ G+G
Sbjct: 421 SGA------RRVYGAQ--------------CDIVLDRAQAIEQAVLEASDGDVVLITGRG 460
Query: 355 HETYQIEGDKKEFFDDREESREAL 378
HE++Q+ G + D + REAL
Sbjct: 461 HESFQVIGALRLERTDEDMVREAL 484
>gi|334147486|ref|YP_004510415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Porphyromonas gingivalis TDC60]
gi|333804642|dbj|BAK25849.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Porphyromonas gingivalis TDC60]
Length = 487
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 199/380 (52%), Gaps = 42/380 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLE-SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
MG + G++S+V Y+ D++ E + TTPD + + L +M G E ME SSH A
Sbjct: 129 MGYKAGLVSTVCNYV--DDRSEPTTHTTPDPLALNALFRRMADAGCEYAFMEVSSHAAAQ 186
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
R +DFD +FTNLTRDH+D+HG+ EY AK F + + +VN DD N
Sbjct: 187 KRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGL--GAQAFALVNADDKNGLV 244
Query: 120 FIAQGNPDVPVVTFA---MENKKADV---HPLKFELSLFETQVLVNTPHGILEISSGLLG 173
+ N V T+A M N +A + H ++ + + +V V L+G
Sbjct: 245 MVQ--NTRARVCTYALKSMANYRAKIVERHIDGMDMYMDDREVFVR-----------LVG 291
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
N YN+L +G E+++R + E+ +V GR + + + IVDYAHTPDAL
Sbjct: 292 DFNAYNLLCVYGASCELGQDREEVLRILSELTSVDGRFQTFTAKDGYVAIVDYAHTPDAL 351
Query: 234 SRLLDSVRELA-PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+LD++R LA ++ITVVG G D+GKRP+M K A +S+ ILTSDNP +E+P +I
Sbjct: 352 VNVLDTIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILTSDNPRDEEPQEI 411
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ +M G+ + + L R A+R A + E+GD V++AG
Sbjct: 412 IQEMATGLST-----------------EDRKKTLLITDRAEAIRTACMLAEKGDFVLIAG 454
Query: 353 KGHETYQIEGDKKEFFDDRE 372
KGHETYQ K FDDRE
Sbjct: 455 KGHETYQEIRGVKHHFDDRE 474
>gi|256827373|ref|YP_003151332.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum
DSM 15641]
gi|256583516|gb|ACU94650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum
DSM 15641]
Length = 494
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 204/384 (53%), Gaps = 33/384 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLE-SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G TG++ +V I G +LE + RTTP++V +Q+L A+M G + V ME SSH L L
Sbjct: 132 GRTTGVIGTVGNRIAG--RLEHAERTTPESVDLQHLFARMRDAGCDTVAMEVSSHALDLE 189
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R F + F+NLT+DH+D+H T E Y AKA LFS R+V+ IDD
Sbjct: 190 RTWGTHFAVTAFSNLTQDHLDYHKTFEAYFEAKALLFSSDYPA---RRVICIDDKWGQEL 246
Query: 121 I---AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ A + V F + A +HP+ + + T V+++ ++ L+GR N+
Sbjct: 247 LRRCAAAGDRILSVGF---DPAAQIHPVSVKYATTHTDVVLDVRGQEYSLTYPLVGRFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELID--EEQAFGVIVDYAHTPDALSR 235
N++ A+ +G+ +G P+E ++R + E VPGR + I + V VDYAHTPDAL +
Sbjct: 304 SNVMLALGIGLELGIPIEVVLRALSESPQVPGRLQRISAVHDGGISVFVDYAHTPDALRK 363
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+ +V L R+I V GC G+ D KRPLM + A D ++TSDNP +EDP I+ D
Sbjct: 364 AISAVANLTDGRVIVVFGCGGDRDATKRPLMGQAAL-SGDFAVVTSDNPRSEDPDAIISD 422
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+L G+ + R +H RR A+ A+A+ GD ++VAGKGH
Sbjct: 423 ILEGMESASE------------------RFEVHPDRREAIARAIALANTGDAILVAGKGH 464
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
E YQI + F D E + E L+
Sbjct: 465 EDYQILATETIHFSDAEVAGEELE 488
>gi|192360758|ref|YP_001983390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cellvibrio japonicus Ueda107]
gi|190686923|gb|ACE84601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cellvibrio japonicus Ueda107]
Length = 521
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 195/355 (54%), Gaps = 26/355 (7%)
Query: 28 PDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEE 87
PD V +Q ++ ++ G + +E SSH L R + + FD A+FTNLT+DH+D+HG
Sbjct: 175 PDPVALQRILRQLRTGGASSAAIEVSSHSLQQKRVAGLAFDTAIFTNLTQDHLDYHGDLA 234
Query: 88 EYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKF 147
Y AKA+L + P + N+DD + A+ V + F+++ + ADV+
Sbjct: 235 SYGKAKAEL---LFMPGLKHALFNMDDAWVKALAAKTPAGVSAIGFSLQ-EPADVYLRDI 290
Query: 148 ELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAV 207
L + +P G E S LLG N+ N++A V+ GAPLE ++ + + A
Sbjct: 291 HLHASGASAWLVSPWGEAEFHSPLLGLFNLSNLVAVVSAACIQGAPLEQVLALVPHLVAA 350
Query: 208 PGRCE--LIDEE-QAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRP 264
PGR + ++D + Q V+VDYAHTPDAL L ++RE RI TV GC G+ D+ KRP
Sbjct: 351 PGRMQPVVVDADVQEIQVLVDYAHTPDALENTLKAIREHQADRIWTVFGCGGDRDKTKRP 410
Query: 265 LMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHR 324
LM +IA SD I+T+DNP +EDP I D++ G+ N+ PNG
Sbjct: 411 LMGRIAEKLSDYVIVTNDNPRSEDPARIAADIVRGL------------NN-----PNGC- 452
Query: 325 LFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
L L D R A+ AV + GD+V++AGKGHE YQI D+ F D +++R ALQ
Sbjct: 453 LVLAD-RAQAIDFAVQQAKPGDLVLIAGKGHEDYQIFADQTLPFSDSQQARLALQ 506
>gi|451949063|ref|YP_007469658.1| UDP-N-acetylmuramyl-tripeptide
synthetase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
alanine ligase [Desulfocapsa sulfexigens DSM 10523]
gi|451908411|gb|AGF80005.1| UDP-N-acetylmuramyl-tripeptide
synthetase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
alanine ligase [Desulfocapsa sulfexigens DSM 10523]
Length = 1025
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 132/395 (33%), Positives = 214/395 (54%), Gaps = 28/395 (7%)
Query: 2 GLRTGMLSSVSYYIHGDN----KLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGL 57
G R G+L +V Y + + ++ S TTP+ +++Q + KM +G ++VVME SSHGL
Sbjct: 162 GKRPGVLGTVDYRYYDPSGVLIRIPSSFTTPEPLLLQQTLRKMADDGVDSVVMEISSHGL 221
Query: 58 ALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNA 117
R + FD+A +TNL+RDH+D+H E Y AK+ LF+ + ++ + V+ D
Sbjct: 222 EQNRIGALKFDVAAYTNLSRDHLDYHCDMENYFTAKSLLFTDHLR-DKGKAVITYSD-QK 279
Query: 118 TSFIAQGNPDVPVVTFAM----ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLG 173
++ A+ F++ + K D+ PL + +T+V + TP+GI S L+G
Sbjct: 280 ENWSARMESLCLEKGFSVLSCGDGKGRDIFPLAVNSDIRKTEVTLQTPNGICSFVSPLVG 339
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE---LIDEEQAF--GVIVDYAH 228
N+ N+ A A+ + G I + + PGR + +I +E++F V VDYAH
Sbjct: 340 NFNVSNLQTAYAMAMVAGISPVTIAAALNKAKGAPGRLQQIAVIPDERSFRPAVFVDYAH 399
Query: 229 TPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNED 288
TPDAL ++L +V+ L + V GC G+ D GKRPLM +A +DV I+T DNP +ED
Sbjct: 400 TPDALEQVLKTVKGLPHSNLYCVFGCGGDRDSGKRPLMGTVAGSYADVVIVTDDNPRSED 459
Query: 289 PLDILDDMLAGVGWTMQEY----LKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEE 344
I+ D++ G+ Q Y + ++ + +P+ HR A++ A++
Sbjct: 460 SEVIIGDIVRGIAIQQQSYPWLVQRKSDDRGFVIIPDRHR---------AIQVAISAAAG 510
Query: 345 GDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
D+VV+AGKGHE YQ+ ++FFDD E+ + L
Sbjct: 511 DDIVVIAGKGHEDYQLTRLGRKFFDDSLEAAQVLS 545
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 26/209 (12%)
Query: 59 LGRCSEV-DFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP-- 115
+ R +E+ D DIA N+ H+ G E AKA+LF + VVN DDP
Sbjct: 728 IARLTEIADPDIACVLNVHGAHLQGLGDIEGVARAKAELFQG--SGKGTILVVNGDDPRV 785
Query: 116 -NATSFIAQ---------GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL 165
A +Q P VP V +A + + D L F L + + ++LV L
Sbjct: 786 VKAAESCSQEKIVFGMVDNGPGVPDV-YATDCRTGDRENLSFVLHVHDQEILVT-----L 839
Query: 166 EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD 225
+++ G HNI N LAA A+ A G ++ I G+ R +++D +I D
Sbjct: 840 QVA----GAHNISNALAAAAIATAAGVDIQYIGDGLSAFKPTERRMQIVDGPSGSRIIND 895
Query: 226 -YAHTPDALSRLLDSVRELAPRRIITVVG 253
Y P+++ + +++EL I V+G
Sbjct: 896 TYNANPESMKAGIATLQELGGGTRIAVLG 924
>gi|431932384|ref|YP_007245430.1| UDP-N-acetylmuramyl tripeptide synthetase [Thioflavicoccus mobilis
8321]
gi|431830687|gb|AGA91800.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioflavicoccus mobilis
8321]
Length = 513
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 150/383 (39%), Positives = 204/383 (53%), Gaps = 30/383 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
R G++ ++ G+ +E TTPD V +Q +A + G AV ME SSH L GR +
Sbjct: 148 RCGLIGTLGVGFPGE-LVEDGHTTPDPVTLQQQLAGLRTAGARAVAMEVSSHALDQGRAA 206
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
V F AVFTNLTRDH+D+HG Y AK +LF+ V+N DD + +
Sbjct: 207 AVRFREAVFTNLTRDHLDYHGDMVHYGEAKRRLFAAH---GLEWAVLNRDDDFTSEILGG 263
Query: 124 GNPDVPVVTFAMEN--KKADVHPLKFELSLFE-----TQVLVNTPHGILEISSGLLGRHN 176
P V +++E A + L E ++ V T HG + +GL+GR N
Sbjct: 264 LRPGVARALYSLEPHPPAAGMCDLWVCARTIEPRPRGLRLTVATSHGEGTLEAGLIGRFN 323
Query: 177 IYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236
N+LA +AV +A G PL +R + +V VPGR E E A VIVDYAHTPDAL +
Sbjct: 324 AANLLAVLAVLLARGQPLVQALRALAQVHGVPGRMECFGGEGAPLVIVDYAHTPDALEQA 383
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L ++R+ A RR++TV GC GE DRGKRPLM +A SD ILT DNP ED DI+ ++
Sbjct: 384 LANIRQHAGRRVLTVFGCGGERDRGKRPLMGAVAERLSDSVILTDDNPRGEDGADIIAEI 443
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG + N + + R +A+R A+A+ + D V+VAGKGHE
Sbjct: 444 RAG-------------------MANPSAVRVERQRALAIRLAIALADRRDAVLVAGKGHE 484
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
T Q GD K F DR + +AL+
Sbjct: 485 TIQDMGDLKVRFSDRAQVVQALR 507
>gi|452127411|ref|ZP_21939992.1| bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Bordetella holmesii H558]
gi|451926691|gb|EMD76821.1| bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Bordetella holmesii H558]
Length = 940
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 136/400 (34%), Positives = 202/400 (50%), Gaps = 35/400 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G G + ++ + L TTPD V V +A M G +AV MEASS GL G
Sbjct: 133 LGKPCGTIGTLGGVLPDGRSLGGSLTTPDVVTVHRWLAAMRDAGAQAVAMEASSIGLEQG 192
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R V +A FTNLTRDH+D+HGT + Y AKA LF+ P V+N DDP
Sbjct: 193 RMDHVRLVVAGFTNLTRDHLDYHGTMQNYEAAKALLFNW---PGLQAAVINADDPAGQRL 249
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+A P +++E+ A+++ + + + T G ++ + LLGRHN+ N+
Sbjct: 250 LAT-LPAGLASGYSIESADAEIYVCDLQATAHGQVFTLRTAQGEAQVVTSLLGRHNVSNL 308
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG------VIVDYAHTPDALS 234
L + + +G P+ + R I AV GR + + V+VDYAHTPDAL+
Sbjct: 309 LLVAGMLLKLGWPVSAVTRQIAAAAAVDGRLQTVTALPLAAPLTSPLVVVDYAHTPDALA 368
Query: 235 RLLDSVRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
R L ++R +A R ++ + GC G+ D GKRP M +IA+ +D I++SDNP +E P
Sbjct: 369 RALSALRPVAQARGGALVCLFGCGGDRDPGKRPEMGRIASGLADRIIVSSDNPRSESPQA 428
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
I++ +LAGVG + + R +A+ + D+V++A
Sbjct: 429 IIEQILAGVGQSGSVQTQVD-------------------RALAILQTIWASRPEDIVLLA 469
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQYVDELHQAGIDT 391
GKGHETYQ +K FDDRE +R A H +G+ T
Sbjct: 470 GKGHETYQEIAGRKVAFDDREWARAAFALS---HVSGVST 506
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 6/183 (3%)
Query: 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDV 128
+A+ N R+H +F T E + + + P+ V DD T+ +
Sbjct: 659 VALVNNAQREHQEFMHTVEAVARENGAVIAAL--PDDGVAVYPGDD-RYTAVWDELAGAR 715
Query: 129 PVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGI 188
V+ F ++ DV+ L T V TP G+ E++ + G HN+ N LAA+A +
Sbjct: 716 RVLRFGLQ-PGLDVYAQDVRADLMGTLCRVVTPAGVAELALPVPGEHNLRNALAAIACAL 774
Query: 189 AVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVREL-APR 246
A GAPL +R ++ AV GR + + +I D Y PD++ ++ + +L PR
Sbjct: 775 AAGAPLASAIRALQGFAAVKGRMQRKEMSDGTLLIDDTYNANPDSVRAAIEVLAQLPGPR 834
Query: 247 RII 249
++
Sbjct: 835 ALV 837
>gi|423316130|ref|ZP_17294035.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bergeyella zoohelcum
ATCC 43767]
gi|405584403|gb|EKB58310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bergeyella zoohelcum
ATCC 43767]
Length = 486
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 203/385 (52%), Gaps = 29/385 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + ++S+V Y I D L + TTPD + + ++A+ + G E ME SSHG+
Sbjct: 129 LGYPSALISTVEYRI-ADEILPATHTTPDIITLNKILAQAVEKGCEYAFMEVSSHGIHQH 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F IA FTN+T DH+D+H T EY N K + F + PE + NIDD N
Sbjct: 188 RIEGLHFSIAGFTNITHDHLDYHKTFLEYLNTKKRFFDDL--PETAVAITNIDDKNGNVM 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N ++A++ AD H E+ + N E + L G+ N+ N+
Sbjct: 246 LQ--NTKARKKSYAVKT-MADYHGKLLEVDFNGMLLHFNGK----EFWTTLTGKFNVSNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L A+ +G +I++ + ++ V GR E I + +VDYAHTPDAL +LDS+
Sbjct: 299 LLVFAIAHELGFGENEILQALSQLKRVNGRFETIKSDGGIIFVVDYAHTPDALENVLDSI 358
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ + R+I V GC G+ D+ KRP M K+AT K+ ++I+TSDNP E+P I+ ++ A
Sbjct: 359 NEIRTKNERLICVFGCGGDRDKEKRPEMGKVATKKATLSIITSDNPRTEEPSQIIKEIEA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ Q + K Y +P+ R+ A++ A+ E D+++VAGKGHETY
Sbjct: 419 GI--EAQNFSK------YTSIPD---------RKEAIKMAIKFAEPKDIILVAGKGHETY 461
Query: 359 QIEGDKKEFFDDREESREALQYVDE 383
Q K FDD+E E Q + +
Sbjct: 462 QEVNGIKHHFDDKEVIHELWQLMSK 486
>gi|313200237|ref|YP_004038895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688]
gi|312439553|gb|ADQ83659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688]
Length = 477
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/346 (38%), Positives = 193/346 (55%), Gaps = 28/346 (8%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTPD +++ L+A+ L G A ME SSHGL GR + V FD+AVFTNLTRDH+D+HG
Sbjct: 146 TTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQGRVNGVHFDVAVFTNLTRDHLDYHGD 205
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI-AQGNPDVPVVTFAMENKKADVHP 144
+ Y AK +L M P V+N +D +F+ A + PV+++ M++ DVH
Sbjct: 206 MDSYAAAKRRL---MEWPGLKLAVLNAEDAYGLTFLQALRSEGRPVLSYGMQS--GDVHS 260
Query: 145 LKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEV 204
L Q+ V TP G + + + ++GR N YN+LA +A +A+ PLE + I +
Sbjct: 261 TSLHLHETGMQMSVTTPWGDVTLQASVMGRFNAYNLLAVLATLLAMDVPLEAAAQAIATL 320
Query: 205 DAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRP 264
VPGR E V++DYAHTPDAL L ++RE ++ V GC G+ D GKRP
Sbjct: 321 KPVPGRMEQYGGNAMPVVVIDYAHTPDALENALQALREQTRGKLWCVFGCGGDRDAGKRP 380
Query: 265 LMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHR 324
+M IA+ +D ++TSDNP +E+P I+ D+ A +G H+
Sbjct: 381 MMGAIASRLADHVVVTSDNPRSENPDTIIADITASMG-------------------RNHQ 421
Query: 325 LFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ-IEGDKKEFFD 369
+ + RR A+ A+ GD+V+VAGKGHETYQ I+G + + D
Sbjct: 422 IMVD--RRAAIAHAIEQAAPGDIVLVAGKGHETYQEIKGVRHPYSD 465
>gi|332982164|ref|YP_004463605.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mahella australiensis 50-1 BON]
gi|332699842|gb|AEE96783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mahella australiensis 50-1 BON]
Length = 484
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 140/392 (35%), Positives = 208/392 (53%), Gaps = 54/392 (13%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ I GD L + RTTP++ + L +M G + VVME SSH LAL R
Sbjct: 129 GRKVGLIGTIQNMI-GDVVLHTERTTPESSDLYALFRQMADGGIQDVVMEVSSHSLALNR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS-- 119
+ FDI +FTNLT DH+DFH ++Y AK KLF N+DD
Sbjct: 188 VAGCRFDIGIFTNLTEDHLDFHSNMDDYFAAKLKLFQ-----NSGLIATNVDDSYGVKLK 242
Query: 120 --FIAQGNPDVPVVTFAME--------NKKADVHPLKFELSLFETQ--VLVNTPHGILEI 167
F+++ V T+ +E N +D F++ + + V++N P
Sbjct: 243 DMFVSK-----TVYTYGIEREAHVTASNILSDAKGSTFDIDICGDRRPVIINIP------ 291
Query: 168 SSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYA 227
GR ++YN LAA A A+G +DI +G++ + +VPGR E++ + F VI+DYA
Sbjct: 292 -----GRFSVYNALAAAAACYAMGVSADDISKGLQALKSVPGRFEVLGTDTDFTVIIDYA 346
Query: 228 HTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNE 287
HTPD L +L SV+++A R+I + GC G+ D KRP+M +I +D ILTSDNP +E
Sbjct: 347 HTPDGLENILKSVKDIAKGRVIALFGCGGDRDAAKRPIMGEIGGRYADFCILTSDNPRSE 406
Query: 288 DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347
DP+ I+ + G+ T Y+ EN RR A++ + + D+
Sbjct: 407 DPMAIIRQIEEGIRKTHCPYIVI-EN-----------------RRQAIKYGLQTARKDDI 448
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+++AGKGHETYQI DK FD+RE RE L+
Sbjct: 449 LLLAGKGHETYQILKDKTIHFDEREVVRELLE 480
>gi|404487171|ref|ZP_11022358.1| UDP-N-acetylmuramyl-tripeptide synthetase [Barnesiella
intestinihominis YIT 11860]
gi|404335667|gb|EJZ62136.1| UDP-N-acetylmuramyl-tripeptide synthetase [Barnesiella
intestinihominis YIT 11860]
Length = 487
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 45/383 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D + + TTPD + + L+ +M+ G ME SSH A
Sbjct: 130 FGYKVGLLSTVCNYID-DIAVPATHTTPDPLHLHRLLREMVDAGCAYAFMEVSSHSAAQH 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + +DF+ A+FTNLTRDH+D+H T E Y AK F + P+ + NIDD +
Sbjct: 189 RIAGLDFNGAIFTNLTRDHIDYHKTVEAYLKAKKSFFDGL--PKGAFALTNIDDKSGLVM 246
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFE-LSLFETQVLVNTPHGI-LEISSG-----LLG 173
++N KA+ H L+ F +++ + G+ LEI+ +G
Sbjct: 247 --------------LQNTKAEKHTYSLRTLADFRVRIIESRIDGMTLEINGKEVEVMFVG 292
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
+ N YN+LA +G E+++R + + V GR + + + + IVDYAHTPDAL
Sbjct: 293 KFNAYNLLAVYGAACLLGQEPEEVLRKMSLLVPVAGRFQTLHSSKGYTAIVDYAHTPDAL 352
Query: 234 SRLLDSVRELAPRR--IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
+ +L S+R++ R IITVVG G D+GKRP+M + A + SD ILTSDNP E+P D
Sbjct: 353 NNVLSSIRDVLGNRGHIITVVGAGGNRDKGKRPMMAREAVNLSDRVILTSDNPRFENPND 412
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL+DML G+ + L + D RR A+R A + GD+V++A
Sbjct: 413 ILNDMLEGLDAEQRR----------------KTLAIVD-RREAIRAATQFAQPGDVVLIA 455
Query: 352 GKGHETYQ-IEGDKKEFFDDREE 373
GKGHE YQ IEG K FDD+EE
Sbjct: 456 GKGHEDYQEIEG-VKHHFDDKEE 477
>gi|395650349|ref|ZP_10438199.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 487
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 209/377 (55%), Gaps = 27/377 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESP-RTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G G++ ++ +G L+S TTP+ + VQ +A + G +AV ME SSHGL
Sbjct: 126 LGQHCGIVGTLGTGFYG--ALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FD+AV TNL+RDH+D+HGT E Y AKAKLF+ + +VVN+DD
Sbjct: 184 GRVTALAFDVAVMTNLSRDHLDYHGTMEAYAAAKAKLFAW---NDLKCRVVNLDDAFGRQ 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
A+ + + ++++++E+ A ++ + + + + + TP G + S LLGR N+ N
Sbjct: 241 LAAE-DSEARLISYSLEDASAYLYCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA+ + + L++I+R + +++ GR + + V+VDYAHTPDAL ++L +
Sbjct: 300 VLAAIGALLGLDYALDEILRVLPKLEGPAGRMQRLGGGSQPLVVVDYAHTPDALEKVLSA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A +++ + GC G+ DRGKRPLM +I +D ++T DNP +EDP I DD+ AG
Sbjct: 360 LRPHAKGKLLCLFGCGGDRDRGKRPLMAEIVERLADGVLVTDDNPRSEDPSQIFDDIRAG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ G R VA+ +A D+VV+AGKGHE YQ
Sbjct: 420 FKDVSKVAFVAG-------------------RGVAIAQLIASARADDVVVLAGKGHEDYQ 460
Query: 360 -IEGDKKEFFDDREESR 375
I G++ F D E R
Sbjct: 461 EINGERHTFSDLVEADR 477
>gi|237720374|ref|ZP_04550855.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 2_2_4]
gi|229450125|gb|EEO55916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 2_2_4]
Length = 482
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 203/385 (52%), Gaps = 43/385 (11%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A R S
Sbjct: 132 KVGLISTVCNYID-DEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRIS 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
+ F +FTNLTRDH+D+H T E Y AK K F + P+ + N+DD N +
Sbjct: 191 GLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PKSAFSLTNLDDKNG--LVMT 246
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGRHNI 177
N V T+++ + L F+ +VL + G+L E++ +G+ N
Sbjct: 247 QNTRSKVYTYSLRS-----------LCDFKGRVLESHFEGMLLDFNNHELAVQFIGKFNA 295
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA + +G E+++ + + V GR + + Q IVDYAHTPDAL +L
Sbjct: 296 SNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGVTAIVDYAHTPDALINVL 355
Query: 238 DSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI++D
Sbjct: 356 NAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIIND 415
Query: 296 MLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
MLAG+ M++ + + R+ A+R A + E+GD+++VAGKG
Sbjct: 416 MLAGLDAEDMKKTVSIAD------------------RKEAIRTACMLAEKGDVILVAGKG 457
Query: 355 HETYQIEGDKKEFFDDREESREALQ 379
HE YQ K FDD+E +E +
Sbjct: 458 HENYQEIKGVKHHFDDKEVLKEIFK 482
>gi|452124025|ref|ZP_21936609.1| bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Bordetella holmesii F627]
gi|451923255|gb|EMD73396.1| bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Bordetella holmesii F627]
Length = 919
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 136/400 (34%), Positives = 202/400 (50%), Gaps = 35/400 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G G + ++ + L TTPD V V +A M G +AV MEASS GL G
Sbjct: 112 LGKPCGTIGTLGGVLPDGRSLGGSLTTPDVVTVHRWLAAMRDAGAQAVAMEASSIGLEQG 171
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R V +A FTNLTRDH+D+HGT + Y AKA LF+ P V+N DDP
Sbjct: 172 RMDHVRLVVAGFTNLTRDHLDYHGTMQNYEAAKALLFNW---PGLQAAVINADDPAGQRL 228
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+A P +++E+ A+++ + + + T G ++ + LLGRHN+ N+
Sbjct: 229 LAT-LPAGLASGYSIESADAEIYVCDLQATAHGQVFTLRTAQGEAQVVTSLLGRHNVSNL 287
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG------VIVDYAHTPDALS 234
L + + +G P+ + R I AV GR + + V+VDYAHTPDAL+
Sbjct: 288 LLVAGMLLKLGWPVSAVTRQIAAAAAVDGRLQTVTALPLAAPLTSPLVVVDYAHTPDALA 347
Query: 235 RLLDSVRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
R L ++R +A R ++ + GC G+ D GKRP M +IA+ +D I++SDNP +E P
Sbjct: 348 RALSALRPVAQARGGALVCLFGCGGDRDPGKRPEMGRIASGLADRIIVSSDNPRSESPQA 407
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
I++ +LAGVG + + R +A+ + D+V++A
Sbjct: 408 IIEQILAGVGQSGSVQTQVD-------------------RALAILQTIWASRPEDIVLLA 448
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQYVDELHQAGIDT 391
GKGHETYQ +K FDDRE +R A H +G+ T
Sbjct: 449 GKGHETYQEIAGRKVAFDDREWARAAFALS---HVSGVST 485
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 6/183 (3%)
Query: 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDV 128
+A+ N R+H +F T E + + + P+ V DD T+ +
Sbjct: 638 VALVNNAQREHQEFMHTVEAVARENGAVIAAL--PDDGVAVYPGDD-RYTAVWDELAGAR 694
Query: 129 PVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGI 188
V+ F ++ DV+ L T V TP G+ E++ + G HN+ N LAA+A +
Sbjct: 695 RVLRFGLQ-PGLDVYAQDVRADLMGTLCRVVTPAGVAELALPVPGEHNLRNALAAIACAL 753
Query: 189 AVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVREL-APR 246
A GAPL +R ++ AV GR + + +I D Y PD++ ++ + +L PR
Sbjct: 754 AAGAPLASAIRALQGFAAVKGRMQRKEMSDGTLLIDDTYNANPDSVRAAIEVLAQLPGPR 813
Query: 247 RII 249
++
Sbjct: 814 ALV 816
>gi|417778790|ref|ZP_12426590.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira weilii str. 2006001853]
gi|410781050|gb|EKR65629.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira weilii str. 2006001853]
Length = 512
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 204/383 (53%), Gaps = 28/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ GD +++ TTPDA + ++ +M G V MEASSHGL LGR
Sbjct: 149 GRSCGLIGTIGVKF-GDRLIDTGYTTPDASSLNLVLKQMKDEGVTTVFMEASSHGLKLGR 207
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF- 120
+ VFTNLT+DH+DFH E+Y +K +LF + + V++ P
Sbjct: 208 IGGISLKAGVFTNLTQDHLDFHSDMEDYFKSKFRLFEILDVSKSPFAVLDYASPGGNELY 267
Query: 121 --IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQ-VLVNTPHGILEISSGLLGRHNI 177
I PD+PV A++ + + L+L T VL + + IS+ LLG N+
Sbjct: 268 QKIRNNFPDLPVK--ALDGIEGECKVSDISLTLQGTSYVLSLSGNRRQTISTNLLGSFNV 325
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRL 236
N A G+ +G E ++ ++E+ +PGR +++ ++++ +VDYAHTPDAL +
Sbjct: 326 RNTALAFLTGLDLGLDQERMLSSLKEIPQIPGRFQIVYSKDRSRMAVVDYAHTPDALENI 385
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ SVR P+R+IT+ GC G+ DR KRP M +IA + SD ILTSDNP E P ILD++
Sbjct: 386 IRSVRNSRPKRLITLFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEI 445
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGH 355
+G + P G L ++ R A+ VA+ EG ++VAGKGH
Sbjct: 446 QSG----------------FSP---GFTPLLREVDRARAISKGVAVLPEGGCLLVAGKGH 486
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E YQI G +K F D EE R+A
Sbjct: 487 EEYQIIGKEKRHFSDVEEVRKAF 509
>gi|94987541|ref|YP_595474.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis
PHE/MN1-00]
gi|442556395|ref|YP_007366220.1| UDP-N-acetylmuramyl tripeptide synthetase [Lawsonia intracellularis
N343]
gi|166224781|sp|Q1MPC4.1|MURE_LAWIP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|94731790|emb|CAJ55153.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis
PHE/MN1-00]
gi|441493842|gb|AGC50536.1| UDP-N-acetylmuramyl tripeptide synthetase [Lawsonia intracellularis
N343]
Length = 482
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 136/381 (35%), Positives = 204/381 (53%), Gaps = 29/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ +++Y G +K E+P TTP + + ++A+M + TE V ME SSH L R
Sbjct: 124 GNRTGVIGTIAYRWPGFSK-EAPLTTPQCLDLHAMLAQMQVDKTEIVFMEVSSHALDQRR 182
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ + F +FTNLT+DH+D+H +EY +AKA+LF P +++ +V D +
Sbjct: 183 IAGISFKGVIFTNLTQDHLDYHKDMKEYFHAKARLFFEY--PSKNKIMVASMDNQWGRKL 240
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQ----VLVNTPHGILEISSGLLGRHNI 177
A+ P++ + F +NK V F L ++ + ++ + E+ + L+G HN
Sbjct: 241 AKLVPEI--IGFGFKNKPTQVSNYLFGKILSSSRAGLHLQMSFKDKVWELCTPLVGVHNA 298
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA A+ + +G ED E+ VPGR E I ++ + VDYAHTPDAL +L
Sbjct: 299 ENLLAVQAISLQLGLAPEDFC-CFEKFTGVPGRLERIVNKKQLDIFVDYAHTPDALINVL 357
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++R++ +RIITV GC G D+ KRPLM K SDV +LTSDNP NEDP I+ D+L
Sbjct: 358 SALRDVGFKRIITVFGCGGNRDKAKRPLMGKAVAKLSDVAVLTSDNPRNEDPELIMADVL 417
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
P L ++ R A+R A+ + GD ++VAGKGHE
Sbjct: 418 -------------------PGLKKAKQIITEPDREKAIRQAIELVSPGDALLVAGKGHEC 458
Query: 358 YQIEGDKKEFFDDREESREAL 378
Q G K F D+ R+ L
Sbjct: 459 TQQIGFMKYPFSDQSVIRKIL 479
>gi|329954174|ref|ZP_08295269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides clarus YIT 12056]
gi|328528151|gb|EGF55131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides clarus YIT 12056]
Length = 482
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 206/387 (53%), Gaps = 41/387 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD V + L+ +M +G + ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DQPVPTEHTTPDPVTLNRLLGEMADSGCKYAFMEVSSHSIAQQ 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKSAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSRVYTYSLRS-----------LSDFKGKVLESHFEGMLLDFNNHELAVRFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVTGRFDSIRSPKGITAIVDYAHTPDALV 352
Query: 235 RLLDSVRE-LAPR-RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + LA R ++ITVVG G D+GKRP+M K + SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHDVLAGRGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG+ E + + D R+ A++ A + + GD+++VAG
Sbjct: 413 INDMLAGLDKDDLE----------------KTISITD-RKYAIKTACLLAQPGDVILVAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHE YQ K FDD+E +E +
Sbjct: 456 KGHENYQEIKGVKHHFDDKEVLKEIMN 482
>gi|225011609|ref|ZP_03702047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
MS024-2A]
gi|225004112|gb|EEG42084.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
MS024-2A]
Length = 486
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 197/374 (52%), Gaps = 36/374 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G+LS+V I+G N+ E+ TTPDA+ + + M+ +G ME SSHG+A R
Sbjct: 131 GYACGLLSTVKI-IYGTNQFENLHTTPDAISINKHLHAMVESGVTHCFMEVSSHGIAQNR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ F + +F+NLT DH+D+HG + YR+ K + F + P+ + N+DD N T +
Sbjct: 190 IEGLHFYVGIFSNLTHDHLDYHGDFKNYRDIKKQFFDSL--PKTAFALTNVDDKNGTYML 247
Query: 122 AQGNPDVPVVTFAMENK---KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
N T+A++ KA + +F L + Q E+ + L+G N
Sbjct: 248 Q--NTVAKKYTYAIKQHADFKAQILECQFSGMLLKIQSQ--------EVWTSLIGAFNAQ 297
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N+LA AV + P I++ I E+ +V GR + + V+VDYAHTPDAL +L
Sbjct: 298 NLLAVYAVSSLLELPSLSILKRISELKSVNGRFQTLQTPNKVTVVVDYAHTPDALENVLQ 357
Query: 239 SVRELAPRR--IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
++ + R +ITV+GC G D+ KRPLM K A + SD I TSDNP NEDP I+ DM
Sbjct: 358 TIATIRTRNETLITVIGCGGNRDQEKRPLMAKAAVNFSDKVIFTSDNPRNEDPAVIISDM 417
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ GV P + + +R A+ A + +EGD+V++AGKGHE
Sbjct: 418 MKGV-----------------PAEHYKKTLKVTLREEAIAMAGQLAKEGDIVLIAGKGHE 460
Query: 357 TYQ-IEGDKKEFFD 369
TYQ I G++ F D
Sbjct: 461 TYQEINGERFPFSD 474
>gi|393201926|ref|YP_006463768.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris
StLB046]
gi|327441257|dbj|BAK17622.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris
StLB046]
Length = 489
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 211/387 (54%), Gaps = 31/387 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G ++ + ++ + ++G ES TT D++ Q ++ + G A+VME SSHGLALG
Sbjct: 128 LGEKSALSGTIGFNLNG-VLYESANTTSDSLNTQQMIFRAKSEGCRAMVMEVSSHGLALG 186
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-VDPERHRKVV-NIDDPNAT 118
R + VD+D+AVFTNLT DH+DFHGT E Y N K LFS++ D E+++ VV N DDP +
Sbjct: 187 RLAGVDYDVAVFTNLTHDHLDFHGTMENYGNTKGLLFSQLGQDLEKNKHVVLNADDPWSE 246
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
+ G P+ T+ + N A + TQ + TP G +S LLG NIY
Sbjct: 247 RY--AGMTPYPIWTYGLHN-NAIFRAVNCNYDNGMTQFDMETPEGTFPVSMHLLGEFNIY 303
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N+LAA AV A G P+E I+ IE + V GR E ID + + +DYAHTPDA+ + ++
Sbjct: 304 NVLAATAVFYARGFPIEVIIEQIEMLPPVKGRMEKIDSDLPIQIFIDYAHTPDAIEKAIN 363
Query: 239 SVRELAP--RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ ++I +VG G D+ KRP M + A+ +D ILT+D+P E+ I D+
Sbjct: 364 AAMPYKKPENKLIFLVGTGGGRDKTKRPTMAEKAS-VADYVILTTDDPRYEEFDSITGDL 422
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
G+ + Y G+ R AVR AV++ GD+++ AGKGHE
Sbjct: 423 AKGM--KHKNYACIGD------------------RAEAVRHAVSVANPGDIIIFAGKGHE 462
Query: 357 TYQIEGDKKEFFDDREESREA--LQYV 381
YQI + K D + + EA L++V
Sbjct: 463 DYQIIENTKYPHSDAKIAIEAGKLKFV 489
>gi|373460715|ref|ZP_09552466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella maculosa OT 289]
gi|371955333|gb|EHO73137.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella maculosa OT 289]
Length = 482
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 194/376 (51%), Gaps = 33/376 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V Y+ D + + TTPD + + L+AKM+ G E ME SSH +
Sbjct: 128 FGHKVGLLSTVCNYVD-DQPIPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQK 186
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YRNAK F + P+ + N DD N
Sbjct: 187 RIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGL--PKDAFAITNADDKNGMVM 244
Query: 121 IAQGNPDVPVV-TFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ V T + + +A + FE E E+ +G+ N+ N
Sbjct: 245 VQNTKATVKTYSTRTLADFRARILECHFEGMYLEIDGR--------EVGVQFIGKFNVSN 296
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
ILA + +G EDI+ + + +V GR E I + F IVDYAHTPDAL+ +L++
Sbjct: 297 ILAVYGAAVMLGKKPEDILLVLSTLHSVSGRLEPIRSPEGFTAIVDYAHTPDALANVLNA 356
Query: 240 VREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ E+ +ITV G G D+GKRPLM + A +SD I+TSDNP E+P I++DML
Sbjct: 357 IHEVLDGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDRVIITSDNPRFEEPQAIINDML 416
Query: 298 AGVG-WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
AG+ +++ + + R+ A+R A M + GD+V+VAGKGHE
Sbjct: 417 AGLNDQQLRKVISIVD------------------RKEAIRTACMMAKRGDVVLVAGKGHE 458
Query: 357 TYQIEGDKKEFFDDRE 372
YQ K FDD+E
Sbjct: 459 DYQEIKGVKHHFDDKE 474
>gi|367468816|ref|ZP_09468641.1| UDP-N-acetylmuramoylalanyl-D-glutamate--26-diaminopimelate ligase
[Patulibacter sp. I11]
gi|365816114|gb|EHN11187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--26-diaminopimelate ligase
[Patulibacter sp. I11]
Length = 490
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 149/381 (39%), Positives = 207/381 (54%), Gaps = 33/381 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG+L +V+ + G + ++ RTTP+A+ +Q A+ML G A V+E SSH LALGR
Sbjct: 123 GRRTGILGTVTQVVGGVER-DAGRTTPEAIDLQRTFAEMLDGGDTACVIEVSSHALALGR 181
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ + AVFTNLT+DH+DFH E+Y AKA+LF+ KVV++DDP +
Sbjct: 182 ADAIHWAAAVFTNLTQDHLDFHADMEDYFAAKARLFAAAPGVP---KVVDVDDPYGRR-L 237
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
A+ +PD +T A++ A + + L ++ V +S+ L GR N+ N L
Sbjct: 238 ARQHPD--AITVALDAPDARIRATEIASDLRGSRFTVEG----RRLSTPLTGRFNVRNAL 291
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS-- 239
A V +G E + VPGR E +D Q F V+VDYAHTPD+L +L +
Sbjct: 292 QAYVVARELGVDAEVAAAALARAGRVPGRLEPVDGGQPFAVLVDYAHTPDSLENVLAAAR 351
Query: 240 --VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
VRE R++ V GC G+ DRGKRPLM IA +DV I TSDNP +EDP ILD++L
Sbjct: 352 GVVREAGHGRVLCVFGCGGDRDRGKRPLMGAIAARDADVAIATSDNPRSEDPAAILDEVL 411
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AG+ + + R A+ A+A+ GD+V+VAGKGHE
Sbjct: 412 AGMADARATVERIED------------------RHAAIERAIALAAPGDVVLVAGKGHEH 453
Query: 358 YQIEGDKKEFFDDREESREAL 378
Q D+ FDD +REAL
Sbjct: 454 GQTFADRTIPFDDVAVAREAL 474
>gi|157364634|ref|YP_001471401.1| UDP-N-acetylmuramyl tripeptide synthetase [Thermotoga lettingae
TMO]
gi|157315238|gb|ABV34337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae
TMO]
Length = 492
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 199/381 (52%), Gaps = 31/381 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G ML ++ Y I G+ K TTPDA+ + M + + VME SSH LA+
Sbjct: 129 LGSNGSMLGTIYYDILGEQKFHHDNTTPDAIEILKAMKNTVDRSGKHFVMEVSSHSLAMK 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R V FDIA TN+TRDH+DFH T +EY K +F D + + + D F
Sbjct: 189 RVESVKFDIAALTNITRDHLDFHQTFDEYIKTKLHIF----DLLKEFGIAVVSD----EF 240
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
N V V + M ++ +D L E+ F T ++ + G + S + G HN YN
Sbjct: 241 EHIVNKRVKKVIYGM-SENSDYRILSAEIDKFGTNFVLKSRFGEHKCSINIPGIHNAYNA 299
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGV--IVDYAHTPDALSRLLD 238
+A +G +E I+ I+ + V GR + I E G+ +VD+AH+PDAL + L
Sbjct: 300 TLVIASLCELGYDIESIIEAIKSFEGVEGRFQFIREGTLVGIDIVVDFAHSPDALEKTLI 359
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ R++A RIITV G G++D+GKRP+M ++ SDV+I+T+D+P EDP +IL ++
Sbjct: 360 TARKIASGRIITVFGAGGQADKGKRPMMAEVVCRYSDVSIITTDDPRGEDPEEILFEVEK 419
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GV P+G + R+ A+ A+ + GDMV+VAG+GHE Y
Sbjct: 420 GV-------------------PSGSPYLVIPDRKEAIETALTLANRGDMVIVAGRGHEEY 460
Query: 359 QIEGDKKEF-FDDREESREAL 378
QI D+++ F D E R+ L
Sbjct: 461 QIFSDERKIPFKDAEVIRKIL 481
>gi|253998167|ref|YP_003050230.1| UDP-N-acetylmuramyl tripeptide synthetase [Methylovorus
glucosetrophus SIP3-4]
gi|253984846|gb|ACT49703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus
glucosetrophus SIP3-4]
Length = 477
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 134/346 (38%), Positives = 193/346 (55%), Gaps = 28/346 (8%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTPD +++ L+A+ L G A ME SSHGL GR + V FDIAVFTNLTRDH+D+HG
Sbjct: 146 TTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQGRVNGVHFDIAVFTNLTRDHLDYHGD 205
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI-AQGNPDVPVVTFAMENKKADVHP 144
+ Y AK +L M P V+N +D +F+ A + PV+++ M++ DVH
Sbjct: 206 MDSYAAAKRRL---MEWPGLKLAVLNAEDAYGLTFLQALRSEGRPVLSYGMQS--GDVHC 260
Query: 145 LKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEV 204
L Q+ V TP G + + + ++GR N YN+LA +A +A+ PLE + I +
Sbjct: 261 TSLHLHETGMQLSVTTPWGDVTLHAAVMGRFNAYNLLAVLATLLAMDVPLEAAAQAIATL 320
Query: 205 DAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRP 264
VPGR E V++DYAHTPDAL L ++RE ++ V GC G+ D GKRP
Sbjct: 321 KPVPGRMEQYGGNAMPVVVIDYAHTPDALENALQALREQTRGKLWCVFGCGGDRDAGKRP 380
Query: 265 LMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHR 324
+M IA+ +D ++TSDNP +E+P I+ D+ A +G H+
Sbjct: 381 MMGAIASRLADHVVVTSDNPRSENPDTIIADITASMG-------------------RNHQ 421
Query: 325 LFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ-IEGDKKEFFD 369
+ + RR A+ A+ GD+V+VAGKGHETYQ I+G + + D
Sbjct: 422 IMVD--RRAAIAHAIEQAAPGDIVLVAGKGHETYQEIKGVRHPYSD 465
>gi|281421046|ref|ZP_06252045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella copri DSM 18205]
gi|281404964|gb|EFB35644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella copri DSM 18205]
Length = 487
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 197/381 (51%), Gaps = 34/381 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI D + + TTPD + + L+ KM+ G E ME SSH +A
Sbjct: 129 FGHKCGLLSTVCNYIE-DEAIPADHTTPDPIELNMLLGKMVEAGCEYAFMECSSHAIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YRNAK F + + + N DD N
Sbjct: 188 RIGGLQFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGL--SKTAFAITNADDKNGMIM 245
Query: 121 IAQGNPDVPVV-TFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ V T +M + +A + F E E+ +G+ N+ N
Sbjct: 246 VQNTKATVKTYSTRSMADFRARILECHFGGMYLEIDG--------REVGVQFIGKFNVSN 297
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA I +G ED++ + + +V GR E I + + IVDYAHTPDAL +L++
Sbjct: 298 LLAVYGAAIMLGKKPEDVLVVMSTLHSVSGRLEPIQSPEGYTAIVDYAHTPDALENVLNA 357
Query: 240 VRELAPRR---IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ E+ + +ITV G G D+GKRPLM + A +SD I+TSDNP E+P DI++DM
Sbjct: 358 IHEVLEGKGGEVITVCGAGGNRDKGKRPLMAQEAVKQSDKVIITSDNPRFEEPQDIINDM 417
Query: 297 LAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
LAG+ M++ + + R+ A+R A + ++GD+++VAGKGH
Sbjct: 418 LAGLNAQQMKKVISIVD------------------RKEAIRTACMLAKKGDVILVAGKGH 459
Query: 356 ETYQIEGDKKEFFDDREESRE 376
E YQ K FDD+E R+
Sbjct: 460 EDYQEIKGVKHHFDDKEVIRD 480
>gi|421111438|ref|ZP_15571915.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira santarosai str. JET]
gi|410803328|gb|EKS09469.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira santarosai str. JET]
Length = 497
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 198/365 (54%), Gaps = 24/365 (6%)
Query: 17 GDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLT 76
GD +++ TTPDA + ++ +M G V MEASSHGL LGR + + VFTNLT
Sbjct: 151 GDRSIDTGYTTPDASSLNLILKQMKDEGVTTVFMEASSHGLKLGRMNGISLKAGVFTNLT 210
Query: 77 RDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAME 136
+DH+DFH E+Y +K +LF + + V++ P + ++P+ A++
Sbjct: 211 QDHLDFHSDMEDYFESKFRLFEILDVSKSPFAVLDYTSPGGDKLFRKIGNNLPIK--ALD 268
Query: 137 NKKADVHPLKFELSLFETQVLVNTPHGILE-ISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
+ + L+L T +++ P + +S+ LLG N+ N A G+ +G E
Sbjct: 269 GIENEYKVSDLSLNLQGTSYVLSLPGNRRQSVSTNLLGSFNVRNTALAFLTGLGIGLDQE 328
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
++ + E+ +PGR +++ ++++ +VDYAHTPDAL ++ SVR P+R+IT+ GC
Sbjct: 329 RMLSSLREIPQIPGRFQIVYSKDRSRMAVVDYAHTPDALENIIRSVRNSQPKRLITLFGC 388
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DR KRP M +IA + SD ILTSDNP E P ILD++ +G
Sbjct: 389 GGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPESILDEIQSG--------------- 433
Query: 315 YYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
+ P G L ++ R A+ VA+ EG ++VAGKGHE YQI G +K F D EE
Sbjct: 434 -FSP---GFIPLLREVDRARAISEGVAVLPEGGCLLVAGKGHEEYQIIGKEKRHFSDVEE 489
Query: 374 SREAL 378
R+A
Sbjct: 490 VRKAF 494
>gi|296313576|ref|ZP_06863517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Neisseria polysaccharea ATCC 43768]
gi|296839877|gb|EFH23815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Neisseria polysaccharea ATCC 43768]
Length = 492
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 197/383 (51%), Gaps = 31/383 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G +T ++ +V G + E+ TTP V VQ L+ + G A ME SSHGL
Sbjct: 132 LGEKTAIIGTVGNGFWGALE-ETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQS 190
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + V F A+FTNLTRDH+D+HGT E Y K++LF + V+NIDD
Sbjct: 191 RVNGVPFRSAIFTNLTRDHLDYHGTMEAYDAIKSRLFYWQ---DLQHAVINIDDEYGAEL 247
Query: 121 IA---QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + PD+ V + +++AD+ F S + TP G + LLGR N
Sbjct: 248 VCRLKKDCPDLAVYGYGF-SERADIRITDFTASSDGIAAVFQTPWGEGRCRTRLLGRFNA 306
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+ A +A+ A G PL+ ++ +E++ GR + I V+VDYAHTPDAL + L
Sbjct: 307 QNLAACIALLCANGYPLDKVLDVLEKIRPASGRMDCIMNSGKPLVVVDYAHTPDALEKAL 366
Query: 238 DSVRELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+++E+ P+ + V GC G DRGKRPLM A +D ++TSDNP E+P DI++D
Sbjct: 367 STLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIIND 426
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+L P +PN R + R A+R AV D++++AGKGH
Sbjct: 427 IL-------------------PAVPNPER--VEADRAAAIRYAVGRAAVNDIILIAGKGH 465
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E YQ K F D E + +AL
Sbjct: 466 ENYQDVQGVKHHFSDFEVAEKAL 488
>gi|302344207|ref|YP_003808736.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfarculus baarsii
DSM 2075]
gi|301640820|gb|ADK86142.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii
DSM 2075]
Length = 511
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 208/381 (54%), Gaps = 16/381 (4%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TGM+ +V + + TTPDAV +Q +A+ML NG EA ME SSH L R
Sbjct: 130 TGMIGTVETCF-AQVRRPAAMTTPDAVTLQKTLAEMLANGVEAAAMEVSSHALDQHRADH 188
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMV-----DPERHRKVVNIDDPNATS 119
FD+ +FTNL+RDH+D+H +Y AK LF+ ++ +R V+ +DD +
Sbjct: 189 CRFDVGLFTNLSRDHLDYHPDMADYFRAKRLLFTELLPWSARQGKRPVSVICLDDDHGRV 248
Query: 120 FIAQG-NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
Q + ++T+ + ADV + V ++ P G LE S L+GR+N+
Sbjct: 249 LADQARGTGLALLTYGLA-PGADVGGRVLAGGVDGMTVRIDHPGGSLEFHSRLVGRYNLQ 307
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLL 237
NI+ A AVG+A+G E+I G+E V VPGR + + +++ V VDYAH+P+A++ L
Sbjct: 308 NIVGAAAVGLALGLSPEEIKAGLEGVAGVPGRLQRVPGPDRSPAVFVDYAHSPEAIAAAL 367
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+R L R+I V G G+ D+GKRPLM + A +D +LTSDNP EDP+ I+D +
Sbjct: 368 AVLRPLCAGRLICVFGAGGDRDKGKRPLMGRAAGQAADFCVLTSDNPRTEDPMAIIDMVE 427
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AG+ ++ + +N P + R A+ A+ D+V++AGKGHE
Sbjct: 428 AGL---VESEARRCDN----PAAGQRAYAVEADRAAAIAMAIQAAGPADVVLIAGKGHED 480
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G K FDDRE++ A+
Sbjct: 481 YQIIGRVKRHFDDREQALTAM 501
>gi|229588485|ref|YP_002870604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas fluorescens SBW25]
gi|229360351|emb|CAY47208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi nopimelate
ligase [Pseudomonas fluorescens SBW25]
Length = 487
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/386 (33%), Positives = 211/386 (54%), Gaps = 26/386 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESP-RTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G G++ ++ +G L+S TTP+ + VQ +A + G +AV ME SSHGL
Sbjct: 126 LGQHCGIVGTLGAGFYG--ALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FD+AV TNL+RDH+D+HGT E Y AKAKLF+ + +VVN+DD
Sbjct: 184 GRVTALAFDVAVMTNLSRDHLDYHGTMEAYAAAKAKLFAW---NDLKCRVVNLDDAFGRQ 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
A+ + + ++++++E+ A + + + + + + TP G + S LLGR N+ N
Sbjct: 241 LAAE-DSEARLISYSLEDSSAYLFCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA+ + + L++I+R + +++ GR + + + V+VDYAHTPDAL ++L++
Sbjct: 300 VLAAIGALLGLDYALDEILRVLPKLEGPAGRMQRLGGGKQPLVVVDYAHTPDALEKVLEA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A +++ + GC G+ DRGKRPLM +I +D ++T DNP +EDP I DD+ AG
Sbjct: 360 LRPHAKGKLLCLFGCGGDRDRGKRPLMAEIVERLADGVLVTDDNPRSEDPSQIFDDIRAG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ G R A+ +A D+VV+AGKGHE YQ
Sbjct: 420 FNDVSKAAFVAG-------------------RGAAIAQLIASASADDVVVLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREALQYVDELH 385
++ F D E+ AL + H
Sbjct: 461 EINGERHAFSDLVEADHALTAWEVAH 486
>gi|373110994|ref|ZP_09525255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myroides odoratimimus
CCUG 10230]
gi|371641475|gb|EHO07059.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myroides odoratimimus
CCUG 10230]
Length = 485
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 205/387 (52%), Gaps = 41/387 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G G+LS+V + GD + TTPD++ + + + +M+ G E ME SSHG+
Sbjct: 131 LGYEAGLLSTVVIKV-GDIDYNATHTTPDSLTINHYLNEMVEAGCEYCFMEVSSHGIVQM 189
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R ++FD +FTNLT DH+D+H T EYRNAK F ++ P+ + N+DD N
Sbjct: 190 RTHSLEFDGGIFTNLTHDHLDYHKTFAEYRNAKKAFFDQL--PKGSFAITNVDDKNG--L 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
I N D + T+ ++N ++ ++ +VL + G+L EI L+G
Sbjct: 246 IMTQNTDATIKTYGLKN-----------VADYKAEVLESQFSGMLMKINQREIWVQLIGL 294
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA A I +G ++ + + ++ +V GR + + + IVDYAHTPDAL
Sbjct: 295 FNASNLLAVYAAAIQLGVNEDEALLEVSKLTSVAGRFQYVVSSKKVTAIVDYAHTPDALK 354
Query: 235 RLLDSVRELAP--RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+++++ + ++ITVVGC G D+ KRP M +IA++ S+ I TSDNP EDP+ I
Sbjct: 355 NVVETINSIRTYNEKLITVVGCGGNRDKTKRPEMAQIASELSNKVIFTSDNPRFEDPVVI 414
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
L++M GV P + + D R+ A++ A E GD++++AG
Sbjct: 415 LEEMEKGV----------------EPQNTMKTIIVVD-RKQAIKLACQQAEAGDIILIAG 457
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHETYQ + F+D E E L+
Sbjct: 458 KGHETYQEIKGVRNHFNDLEIVTEFLE 484
>gi|423132326|ref|ZP_17119976.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myroides odoratimimus
CCUG 12901]
gi|371639825|gb|EHO05438.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myroides odoratimimus
CCUG 12901]
Length = 473
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 205/387 (52%), Gaps = 41/387 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G G+LS+V + GD + TTPD++ + + + +M+ G E ME SSHG+
Sbjct: 119 LGYEAGLLSTVVIKV-GDIDYNATHTTPDSLTINHYLNEMVEAGCEYCFMEVSSHGIVQM 177
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R ++FD +FTNLT DH+D+H T EYRNAK F ++ P+ + N+DD N
Sbjct: 178 RTHSLEFDGGIFTNLTHDHLDYHKTFAEYRNAKKAFFDQL--PKGSFAITNVDDKNG--L 233
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
I N D + T+ ++N ++ ++ +VL + G+L EI L+G
Sbjct: 234 IMTQNTDATIKTYGLKN-----------VADYKAEVLESQFSGMLMKINQREIWVQLIGL 282
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA A I +G ++ + + ++ +V GR + + + IVDYAHTPDAL
Sbjct: 283 FNASNLLAVYAAAIQLGVNEDEALLEVSKLTSVAGRFQYVVSSKKVTAIVDYAHTPDALK 342
Query: 235 RLLDSVRELAP--RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+++++ + ++ITVVGC G D+ KRP M +IA++ S+ I TSDNP EDP+ I
Sbjct: 343 NVIETINSIRTYNEKLITVVGCGGNRDKTKRPEMAQIASELSNKVIFTSDNPRFEDPVVI 402
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
L++M GV P + + D R+ A++ A E GD++++AG
Sbjct: 403 LEEMEKGV----------------EPQNTMKTIIVVD-RKQAIKLACQQAEAGDIILIAG 445
Query: 353 KGHETYQIEGDKKEFFDDREESREALQ 379
KGHETYQ + F+D E E L+
Sbjct: 446 KGHETYQEIKGVRNHFNDLEIVTEFLE 472
>gi|288574846|ref|ZP_06393203.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570587|gb|EFC92144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 499
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 144/386 (37%), Positives = 208/386 (53%), Gaps = 38/386 (9%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G+L +++Y G ++E+ RTTP+ +Q +++M+ + VME SSHGLA GR S
Sbjct: 137 KVGLLGTITYD-DGTKEIEADRTTPEGSEIQAFLSEMVRSSCNGCVMETSSHGLAQGRLS 195
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
FD+AVFTNLT +H+DFHG E Y K LF++ + +K+ N+DDP + +
Sbjct: 196 GCLFDVAVFTNLTPEHLDFHGDMERYFETKKLLFTQYM-KYNCKKIFNVDDPYGKRLLRE 254
Query: 124 GNPDVPVVTFAMENKKA---------DVHPLKFELSLFETQVLVNTPHGILEISSGLLGR 174
+ VVT++ ++ A DV L F+L++ V P L+GR
Sbjct: 255 CSGS-DVVTYSSKSSSATVTGSNISLDVGGLFFDLAIEGRVNRVRLP---------LIGR 304
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
+N+ N LAA A ++G ++I RG+E + VPGR E ++ IVDYAHTPDALS
Sbjct: 305 YNVSNALAAAAACHSIGFSYDEIQRGLENMPQVPGRMERYLFKKRGCAIVDYAHTPDALS 364
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
LL + RE+ R+I V G GE RG R M +IA K+D +LT DNP EDPL I++
Sbjct: 365 NLLSAAREICKGRLIGVFGLGGERFRGNRWAMGEIAAQKADHLVLTMDNPRGEDPLSIVE 424
Query: 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354
D+L GV K N Y + R+ A+ A+ M EGD+VV++GKG
Sbjct: 425 DILEGV-------HKVDGNSYDVIID----------RKDAIYRALDMSREGDVVVISGKG 467
Query: 355 HETYQIEGDKKEFFDDREESREALQY 380
E Y + KK + D E R +Y
Sbjct: 468 PENYILIKGKKTPYSDSESIRNWGKY 493
>gi|189461558|ref|ZP_03010343.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136]
gi|189431764|gb|EDV00749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides coprocola DSM 17136]
Length = 484
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 130/381 (34%), Positives = 199/381 (52%), Gaps = 43/381 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G+LS+V YI G+ + + TTPD + + L+ +M G + ME SSH +A
Sbjct: 129 FGYKVGLLSTVCNYIDGE-AIPTDHTTPDPITLNRLLGRMADEGCKYAFMEVSSHSVAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTN+TRDH+D+H T E Y AK F + P+ + N DD N +
Sbjct: 188 RIGGLKFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDNL--PKTAFALTNADDKNGSVM 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N + T+++ L F+ +VL + G+L E++ +GR
Sbjct: 246 VQ--NTKAKIATYSLRT-----------LCEFKGKVLEDGFEGMLMDINNREVNVQFIGR 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA +G ED++ + + V GR + + ++ + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVYGAACLLGKQPEDVLLILSTLRPVAGRFDALRSKKGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ E+ R+ITVVG G D+GKRP+M + A +SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHEVLKGRGRVITVVGAGGNRDKGKRPIMAQEAAKQSDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWT-MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M + L + R+ A+R A + + GD+++VA
Sbjct: 413 INDMLAGLTKEDMDKVLSIAD------------------RKEAIRTACMLAQAGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDRE 372
GKGHE YQ K FDD+E
Sbjct: 455 GKGHENYQEIKGVKHHFDDKE 475
>gi|429331486|ref|ZP_19212240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas putida CSV86]
gi|428763818|gb|EKX85979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas putida CSV86]
Length = 487
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 209/386 (54%), Gaps = 26/386 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ +G L+S R TTPD + VQ+ + + G AV ME SSH L
Sbjct: 126 LGQRCGLIGTLGTGFYG--ALQSGRLTTPDPLAVQSTLNDLKKAGARAVAMEVSSHALEQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FDI V TNL+RDH+D+HG+ E Y+ AKAKLF+ P +VVN+DD
Sbjct: 184 GRVAALAFDIVVMTNLSRDHLDYHGSMEAYKAAKAKLFAW---PNLRCRVVNLDDDFGRE 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
A+ + ++++++++ A ++ + + ++ TP G + S LLGR N+ N
Sbjct: 241 LAAEAR-ESRLISYSLKDPAATLYCREASFDDDGVRAVLVTPQGEHMLRSRLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV +A+ PL++I++ E++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 300 MLAAVGTLLAMDHPLDEILKVTAELEGPVGRMQRLGGGSKPLVVVDYAHTPDALEKVLEA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A ++ + GC G+ DRGKRPLM ++A +D ++T DNP +EDP I DD+ G
Sbjct: 360 LRPHARGQLTCLFGCGGDRDRGKRPLMAELAERLADQVVVTDDNPRSEDPQAIFDDIRPG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
G + A+ +A D++V+AGKGHE YQ
Sbjct: 420 FSKADAAEFIAGRGE-------------------AIARVIAAAGVDDVIVLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREALQYVDELH 385
K+ F D E+ +AL + H
Sbjct: 461 EINGKRHDFSDLVEAEKALAVWEASH 486
>gi|386817493|ref|ZP_10104711.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thiothrix nivea DSM 5205]
gi|386422069|gb|EIJ35904.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thiothrix nivea DSM 5205]
Length = 497
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 205/365 (56%), Gaps = 37/365 (10%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTPDA+ V L+ K+ G +V ME SSH L GR + V FD+AV TNLTRDH+D+HGT
Sbjct: 155 TTPDALTVHGLLRKLRTAGFASVAMEVSSHALDQGRVNGVRFDVAVLTNLTRDHLDYHGT 214
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA--QGNPDVPVVTFAMENKKA--- 140
+ Y +AK KLF P+ V+N+DD A Q P + V+ + + + +
Sbjct: 215 VQAYADAKRKLFHW---PDLKAVVLNLDDDFGRQLQADMQDKP-LQVIGYGVGDPTSYPA 270
Query: 141 ----DVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLED 196
V PL F+ + V++ G L+ + +LG+ N+YN+LAA++V +A G P D
Sbjct: 271 GSLVAVDPL-FDHAGISATVVLGEQRGTLQ--APVLGKFNLYNLLAALSVLLAKGVPFTD 327
Query: 197 IVRGIEEVDAVPGRCELIDEEQAFG--VIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
++ +++V VPGR E I G V+VDYAHTP AL ++L +VR R++ V GC
Sbjct: 328 ALQRLQQVRVVPGRMERIAANSDDGKLVVVDYAHTPGALEQVLQAVRAHTRGRLLCVFGC 387
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DRGKRPLM + A +DV I+T DNP +ED I +D++ G+ K G
Sbjct: 388 GGDRDRGKRPLMAQKAESAADVVIVTDDNPRSEDSQQIFEDIMQGISN------KSGVT- 440
Query: 315 YYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREES 374
F HD R A+R A+ + GD V++AGKGHET QI + FDDR ++
Sbjct: 441 -----------FEHD-RAKAIRLAIQQAQAGDTVLIAGKGHETVQILANGTVPFDDRIQA 488
Query: 375 REALQ 379
+ALQ
Sbjct: 489 AQALQ 493
>gi|169629088|ref|YP_001702737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mycobacterium abscessus ATCC 19977]
gi|420862624|ref|ZP_15326020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 4S-0303]
gi|420867209|ref|ZP_15330596.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 4S-0726-RA]
gi|420872700|ref|ZP_15336078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 4S-0726-RB]
gi|420909585|ref|ZP_15372898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 6G-0125-R]
gi|420915971|ref|ZP_15379276.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 6G-0125-S]
gi|420924544|ref|ZP_15387840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 6G-0728-S]
gi|420926861|ref|ZP_15390144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 6G-1108]
gi|420931054|ref|ZP_15394329.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium massiliense 1S-151-0930]
gi|420936551|ref|ZP_15399820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium massiliense 1S-152-0914]
gi|420941312|ref|ZP_15404571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium massiliense 1S-153-0915]
gi|420945551|ref|ZP_15408804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium massiliense 1S-154-0310]
gi|420966370|ref|ZP_15429576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 3A-0810-R]
gi|420977205|ref|ZP_15440385.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 6G-0212]
gi|420982579|ref|ZP_15445749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 6G-0728-R]
gi|421007033|ref|ZP_15470145.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 3A-0119-R]
gi|421012509|ref|ZP_15475596.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 3A-0122-R]
gi|421017418|ref|ZP_15480479.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 3A-0122-S]
gi|421022539|ref|ZP_15485587.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 3A-0731]
gi|421028530|ref|ZP_15491565.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 3A-0930-R]
gi|421033079|ref|ZP_15496101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 3A-0930-S]
gi|421039452|ref|ZP_15502462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 4S-0116-R]
gi|421043057|ref|ZP_15506058.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 4S-0116-S]
gi|169241055|emb|CAM62083.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Mycobacterium
abscessus]
gi|392073342|gb|EIT99181.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 4S-0726-RB]
gi|392075540|gb|EIU01374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 4S-0726-RA]
gi|392077785|gb|EIU03616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 4S-0303]
gi|392121959|gb|EIU47724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 6G-0125-R]
gi|392123655|gb|EIU49417.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 6G-0125-S]
gi|392129197|gb|EIU54947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 6G-0728-S]
gi|392135546|gb|EIU61284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 6G-1108]
gi|392135813|gb|EIU61550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium massiliense 1S-151-0930]
gi|392142066|gb|EIU67791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium massiliense 1S-152-0914]
gi|392151280|gb|EIU76991.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium massiliense 1S-153-0915]
gi|392158759|gb|EIU84455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium massiliense 1S-154-0310]
gi|392167786|gb|EIU93467.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 6G-0212]
gi|392174597|gb|EIV00264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 6G-0728-R]
gi|392199962|gb|EIV25569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 3A-0119-R]
gi|392205049|gb|EIV30633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 3A-0122-R]
gi|392212353|gb|EIV37915.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 3A-0122-S]
gi|392215236|gb|EIV40784.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 3A-0731]
gi|392225561|gb|EIV51078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 4S-0116-R]
gi|392229620|gb|EIV55130.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 3A-0930-S]
gi|392231095|gb|EIV56604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 3A-0930-R]
gi|392236909|gb|EIV62403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 4S-0116-S]
gi|392254314|gb|EIV79780.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 3A-0810-R]
Length = 515
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 198/387 (51%), Gaps = 25/387 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ +V I G++ + S TTP+A +Q L+A+M+ G + VVME SSH LAL R
Sbjct: 148 GKRVGLIGTVGVRIDGED-VPSALTTPEAPALQELLAEMVQRGVDTVVMEVSSHALALNR 206
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS-- 119
F + FTNL+RDH+DFH ++Y KA+LF R HR VV IDD +
Sbjct: 207 VDGTRFAVGAFTNLSRDHLDFHPDMQDYFATKARLFRRDSPQRAHRSVVCIDDDAGRAMA 266
Query: 120 -FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLV-NTPHGILEISSGLLGRHNI 177
+ PDV V+ +++ AD + Q V N P E++ L G +N+
Sbjct: 267 ELAREAGPDVTTVS-SLDGGVADWRCSNVAVGHDGGQRFVANGPDRDTELTIALPGHYNV 325
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N L A+A+ +G GI VPGR E + Q F +VDYAH P AL +L
Sbjct: 326 ANCLVAIAILDVLGVSAATAAPGIATA-GVPGRMEAVAAGQPFLAVVDYAHKPGALRAVL 384
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+S+R R+ V G G DRGKR M K+A + +D+ ++T DNP NE+P I +++
Sbjct: 385 ESLRSHRDGRLAVVFGAGGNRDRGKRADMGKVAAELADLVVVTDDNPRNEEPAAIRTEII 444
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
+G + + ++ G+ RR A+ A GD V+VAGKGHE+
Sbjct: 445 SGTTGSEAQIIEIGD------------------RRAAIDFATLWARPGDTVLVAGKGHES 486
Query: 358 YQIEGDKKEFFDDREESREALQYVDEL 384
Q GD FDDR E R AL+ + L
Sbjct: 487 GQKTGDVTVPFDDRVELRAALEALGSL 513
>gi|420987020|ref|ZP_15450178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 4S-0206]
gi|392186891|gb|EIV12536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Mycobacterium abscessus 4S-0206]
Length = 479
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 198/387 (51%), Gaps = 25/387 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ +V I G++ + S TTP+A +Q L+A+M+ G + VVME SSH LAL R
Sbjct: 112 GKRVGLIGTVGVRIDGED-VPSALTTPEAPALQELLAEMVQRGVDTVVMEVSSHALALNR 170
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS-- 119
F + FTNL+RDH+DFH ++Y KA+LF R HR VV IDD +
Sbjct: 171 VDGTRFAVGAFTNLSRDHLDFHPDMQDYFATKARLFRRDSPQRAHRSVVCIDDDAGRAMA 230
Query: 120 -FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLV-NTPHGILEISSGLLGRHNI 177
+ PDV V+ +++ AD + Q V N P E++ L G +N+
Sbjct: 231 ELAREAGPDVTTVS-SLDGGVADWRCSNVAVGHDGGQRFVANGPDRDTELTIALPGHYNV 289
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N L A+A+ +G GI VPGR E + Q F +VDYAH P AL +L
Sbjct: 290 ANCLVAIAILDVLGVSAATAAPGIATA-GVPGRMEAVAAGQPFLAVVDYAHKPGALRAVL 348
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+S+R R+ V G G DRGKR M K+A + +D+ ++T DNP NE+P I +++
Sbjct: 349 ESLRSHRDGRLAVVFGAGGNRDRGKRADMGKVAAELADLVVVTDDNPRNEEPAAIRTEII 408
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
+G + + ++ G+ RR A+ A GD V+VAGKGHE+
Sbjct: 409 SGTTGSEAQIIEIGD------------------RRAAIDFATLWARPGDTVLVAGKGHES 450
Query: 358 YQIEGDKKEFFDDREESREALQYVDEL 384
Q GD FDDR E R AL+ + L
Sbjct: 451 GQKTGDVTVPFDDRVELRAALEALGSL 477
>gi|422001873|ref|ZP_16349113.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira santarosai serovar Shermani str. LT
821]
gi|417259330|gb|EKT88707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira santarosai serovar Shermani str. LT
821]
Length = 497
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 198/365 (54%), Gaps = 24/365 (6%)
Query: 17 GDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLT 76
GD +++ TTPDA + ++ +M G V MEASSHGL LGR + + VFTNLT
Sbjct: 151 GDRSIDTGYTTPDASSLNLILKQMKDEGVTTVFMEASSHGLKLGRMNGISLKAGVFTNLT 210
Query: 77 RDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAME 136
+DH+DFH E+Y +K +LF + + V++ P + ++P+ A++
Sbjct: 211 QDHLDFHSDMEDYFESKFRLFEILDVSKSPFAVLDYTSPGGDKLYRKIGNNLPIK--ALD 268
Query: 137 NKKADVHPLKFELSLFETQVLVNTPHGILE-ISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
+ + L+L T +++ P + +S+ LLG N+ N A G+ +G E
Sbjct: 269 GIENEYKVSDLSLNLQGTSYVLSLPGNRRQSVSTNLLGSFNVRNTALAFLTGLGIGLDQE 328
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
++ + E+ +PGR +++ ++++ +VDYAHTPDAL ++ SVR P+R+IT+ GC
Sbjct: 329 RMLSSLREIPQIPGRFQIVYSKDRSRMAVVDYAHTPDALENIIRSVRNSQPKRLITLFGC 388
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DR KRP M +IA + SD ILTSDNP E P ILD++ +G
Sbjct: 389 GGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPESILDEIQSG--------------- 433
Query: 315 YYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
+ P G L ++ R A+ VA+ EG ++VAGKGHE YQI G +K F D EE
Sbjct: 434 -FSP---GFIPLLREVDRARAISEGVAVLPEGGCLLVAGKGHEEYQIIGKEKRHFSDVEE 489
Query: 374 SREAL 378
R+A
Sbjct: 490 VRKAF 494
>gi|429726035|ref|ZP_19260845.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella sp. oral taxon 473 str. F0040]
gi|429148076|gb|EKX91089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella sp. oral taxon 473 str. F0040]
Length = 513
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 204/381 (53%), Gaps = 31/381 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + G++S+V YI D+ +E+ TTPD + + L+A M+ G E ME SSH +
Sbjct: 158 LGYKVGLVSTVCNYID-DHAVEATHTTPDPISLNKLLADMVEAGCEYAFMECSSHSIHQH 216
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F +FTNLTRDH+D+H T E YR+AK K+F +D + N+DD N
Sbjct: 217 RIGGLKFMGGIFTNLTRDHLDYHKTFENYRDAK-KMFFDGLDKSAF-AITNLDDRNGAVM 274
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N V T++ + AD E S+ + +N E+S +GR N+ N+
Sbjct: 275 VQ--NCKAQVRTYSTRS-MADYKGRIVEESIEGMLLDINGS----EVSVPFVGRFNVSNL 327
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L + +G +++R + + V GR E I + ++DYAHTPDAL +L ++
Sbjct: 328 LGVYGAAVMLGEDASEVLRVLSTLRPVNGRFEAIRSPKGCSAVIDYAHTPDALENVLTAI 387
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+E+ +IITV G G D+GKRPLM + A +SD I+TSDNP E P DI+ DMLA
Sbjct: 388 QEIVNGKGQIITVCGAGGNRDKGKRPLMAQEAVKRSDRVIITSDNPRFERPEDIIADMLA 447
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ + L + D RR A+R A A+ + GD++++AGKGHE Y
Sbjct: 448 GLDEAGR----------------AKTLTITD-RREAIRTAAALAQTGDVILIAGKGHEPY 490
Query: 359 Q-IEGDKKEFFDDREESREAL 378
Q IEG K FDD EE R A
Sbjct: 491 QEIEG-VKHHFDDHEEVRAAF 510
>gi|289677694|ref|ZP_06498584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase,
partial [Pseudomonas syringae pv. syringae FF5]
Length = 435
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 130/379 (34%), Positives = 208/379 (54%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ +G L+S R TTPD + VQ + + G AV ME SSHGL
Sbjct: 74 LGQRCGIVGTLGTGFYG--SLQSGRHTTPDPIAVQATLTDLRQAGARAVAMEVSSHGLDQ 131
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FD+AV TNL+RDH+D+HGT E Y AKAKLF+ P+ +V+N+DD
Sbjct: 132 GRAAALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW---PDLKCRVINLDDDFGRE 188
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
A + ++T++ + A ++ + + + TP G + S LLGR N+ N
Sbjct: 189 LAAV-KQESRLITYSQLDSTAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSN 247
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + + L++I++ + +++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 248 VLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLGGADKPLVVVDYAHTPDALEKVLEA 307
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ DRGKRPLM ++ +D +T DNP +E P+ I DD+
Sbjct: 308 LRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDIRP- 366
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
G+ + +++ E R A+ +A D+VV+AGKGHE YQ
Sbjct: 367 -GFVAADKVRFIEG-----------------RGQAIAELIASANADDVVVLAGKGHEDYQ 408
Query: 360 IEGDKKEFFDDREESREAL 378
+++ F D +E+ AL
Sbjct: 409 EINGQRQPFSDLQEAASAL 427
>gi|406664805|ref|ZP_11072580.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
[Bacillus isronensis B3W22]
gi|405387653|gb|EKB47077.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
[Bacillus isronensis B3W22]
Length = 489
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 142/387 (36%), Positives = 211/387 (54%), Gaps = 31/387 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G ++ + ++ + ++G ES TT D++ Q ++ + G A+VME SSHGLALG
Sbjct: 128 LGEKSALSGTIGFNLNG-VLYESANTTSDSLNTQQMIFRAKSEGCRAMVMEVSSHGLALG 186
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-VDPERHRKVV-NIDDPNAT 118
R + VD+D+AVFTNLT DH+DFHGT E Y N K LFS++ D E+++ VV N DDP +
Sbjct: 187 RLAGVDYDVAVFTNLTHDHLDFHGTMENYGNTKGLLFSQLGQDLEKNKHVVLNADDPWSE 246
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
+ G P+ T+ + N A + TQ + TP G +S LLG NIY
Sbjct: 247 RY--AGMTPYPIWTYGLHN-NAIFRAVNCNYDNGMTQFDMETPEGTFPVSMHLLGEFNIY 303
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
N+LAA AV A G P+E I+ IE + V GR E +D + + +DYAHTPDA+ + ++
Sbjct: 304 NVLAATAVFYARGFPIEVIIEQIEMLPPVKGRMEKVDSDLPIQIFIDYAHTPDAIEKAIN 363
Query: 239 SVRELAP--RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ ++I +VG G D+ KRP M + A+ +D ILT+D+P E+ I D+
Sbjct: 364 AAMPYKKPENKLIFLVGTGGGRDKTKRPTMAEKAS-VADYVILTTDDPRFEEFDSITGDL 422
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
G+ + Y G+ R AVR AV++ GD+++ AGKGHE
Sbjct: 423 AKGM--KHKNYACIGD------------------RAEAVRHAVSVANPGDIIIFAGKGHE 462
Query: 357 TYQIEGDKKEFFDDREESREA--LQYV 381
YQI + K D + + EA L++V
Sbjct: 463 DYQIIENTKYPHSDAKIAIEAGKLKFV 489
>gi|374595527|ref|ZP_09668531.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Gillisia limnaea DSM 15749]
gi|373870166|gb|EHQ02164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Gillisia limnaea DSM 15749]
Length = 487
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 131/378 (34%), Positives = 203/378 (53%), Gaps = 44/378 (11%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+LS+V+ I + + TTPD++ + + + KM G E ME SSHG+A R
Sbjct: 131 GYKVGLLSTVTVQI-AEATYPTTHTTPDSLTINSYLKKMNEEGVEYCFMEVSSHGIAQDR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ ++F +FTNL+ DH+D+H T EYR+ K F ++ P +VN DD N +
Sbjct: 190 TTALEFAGGIFTNLSHDHLDYHKTFAEYRDVKKSFFDQL--PAAAFALVNADDKNGEVML 247
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGRH 175
N T+A+++ AD + Q+L N G+L ++ S L+G
Sbjct: 248 Q--NTKAKKYTYALKS-YAD----------YTAQILENQFSGLLLKVNGHDLWSKLIGNF 294
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N YNILA A G +G ++ +R I E+++V GR + + +Q IVDYAHTPDAL
Sbjct: 295 NAYNILAIYATGELLGLETQENLRFISELNSVSGRFQYVISKQKITAIVDYAHTPDALKN 354
Query: 236 LLDSVRELAPRR--IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDIL 293
+L+++ + + +ITVVGC G+ D+ KRP+M IA++ S I TSDNP EDP IL
Sbjct: 355 VLETINSIRTKNEELITVVGCGGDRDKTKRPIMGHIASELSTRVIFTSDNPRTEDPEKIL 414
Query: 294 DDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI-RRVAVRCAVAMGEEGDMVVVAG 352
+++ GV P + + + RR A++ A + + D++++AG
Sbjct: 415 EEVEKGVE------------------PQNFKKTMTVVNRRQAIKTACQLAQPNDIILIAG 456
Query: 353 KGHETYQ-IEGDKKEFFD 369
KGHETYQ I G + +F D
Sbjct: 457 KGHETYQEINGVRSDFDD 474
>gi|452852297|ref|YP_007493981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Desulfovibrio piezophilus]
gi|451895951|emb|CCH48830.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Desulfovibrio piezophilus]
Length = 505
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 201/387 (51%), Gaps = 36/387 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
GL+ G+L +V+Y G ++++P TTPD M+ L+ M + VME SSH L R
Sbjct: 140 GLKVGVLGTVNYRWPG-FQMDAPLTTPDCWMIHELIYNMKKADVDVAVMEVSSHALDQYR 198
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ +DFD V TN+T+DH+D+HG E Y AK++LF+ E ++N +DP +
Sbjct: 199 VAGLDFDAGVLTNVTQDHLDYHGDMETYFAAKSRLFNHY-PRESKTNILNYNDPYGRRIL 257
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI----------LEISSGL 171
A + K V + + + ++L T G+ EI S L
Sbjct: 258 AASERGIGYGI----GKTGIVRHEVGDKPMVQGRILSLTGQGMKIETAYKGKSWEIDSPL 313
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD 231
+G N N+LAA AVG+ +G +D+ R +++ VPGR E + + + VDYAHTPD
Sbjct: 314 IGAFNAMNLLAAQAVGLELGLTCKDM-RKLKDFQGVPGRLERVANDAGLDIFVDYAHTPD 372
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
AL + S++ L R+ITV GC G+ D+ KRPLM + +DV +LTSDNP +E P
Sbjct: 373 ALENVQRSLKNLDFTRLITVFGCGGDRDKTKRPLMGQSVARYADVAVLTSDNPRSEIPES 432
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
I+DD+ P L R H R+ A+ AVA + GD +++A
Sbjct: 433 IMDDI-------------------RPGLAKSPRTLEHPDRQTAITMAVAQMQPGDALLIA 473
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI D+ F D+E + +A+
Sbjct: 474 GKGHEDYQILKDETIHFSDKEAALKAI 500
>gi|406967323|gb|EKD92430.1| hypothetical protein ACD_29C00011G0002 [uncultured bacterium]
Length = 496
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 126/355 (35%), Positives = 192/355 (54%), Gaps = 23/355 (6%)
Query: 19 NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78
N +++ TTPDA+ +Q ++ ++ + G + V ME SSHGL R + FDI VFTNLT+D
Sbjct: 154 NLIKTMNTTPDALELQKILFELKNQGAKIVAMEVSSHGLVENRVENIFFDIVVFTNLTQD 213
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAM-EN 137
H+DFH T + YR+AK +F P V+NIDD F + + ++T + +N
Sbjct: 214 HLDFHQTMKNYRSAKELIFQL---PGLKYAVINIDDHAGKYFAKKYENKLSIITISSNKN 270
Query: 138 KKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDI 197
K AD++ K + +NTP G LLG+ NI N LA + V + P I
Sbjct: 271 KNADINVKKLVAIENGFDLNINTPFGFGSFYLPLLGKFNIQNSLAVLGVLGILKMPFRSI 330
Query: 198 VRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGE 257
++ + ++ V GR +L + VIVD+AHTPDAL +L ++R + +++ V GC G+
Sbjct: 331 LKKMTQLQNVTGRMQLYQFKNTPRVIVDFAHTPDALENILKTLRNHSDQKLWCVFGCGGD 390
Query: 258 SDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYP 317
DR KRP M KIA D I+T+DNP +E P I D+L G+
Sbjct: 391 RDRTKRPKMGKIAETYCDKIIITNDNPRSELPEKIAQDILHGIS---------------- 434
Query: 318 PLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDRE 372
N ++ + R+ A++ + + ++ D++VVAGKGHET QI D+ F+D E
Sbjct: 435 ---NQSKVTIQLDRQKAIQTVIQLADQHDLIVVAGKGHETEQIMKDEILHFNDGE 486
>gi|424069279|ref|ZP_17806726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|407995002|gb|EKG35551.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Pseudomonas syringae pv. avellanae str. ISPaVe013]
Length = 487
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 130/379 (34%), Positives = 208/379 (54%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ +G L+S R TTPD + VQ + + G AV ME SSHGL
Sbjct: 126 LGQRCGIVGTLGTGFYG--SLQSGRHTTPDPIAVQATLTDLRQAGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FD+AV TNL+RDH+D+HGT E Y AKAKLF+ P+ +V+N+DD
Sbjct: 184 GRAAALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW---PDLKCRVINLDDDFGRE 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
A + ++T++ + A ++ + + + TP G + S LLGR N+ N
Sbjct: 241 LAAV-KQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + + L++I++ + +++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 300 VLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLGGADKPLVVVDYAHTPDALEKVLEA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ DRGKRPLM ++ +D +T DNP +E P+ I DD+
Sbjct: 360 LRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDIRP- 418
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
G+ + +++ E R A+ +A D+VV+AGKGHE YQ
Sbjct: 419 -GFVAADKVRFIEG-----------------RGQAIAELIASANADDVVVLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREAL 378
+++ F D +E+ AL
Sbjct: 461 EINGQRQPFSDLQEAASAL 479
>gi|297559868|ref|YP_003678842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296844316|gb|ADH66336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 555
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 144/397 (36%), Positives = 201/397 (50%), Gaps = 38/397 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+RTG++ +V + GD ++ S TTP+A + L A M G A ME SSH LAL R
Sbjct: 153 GMRTGLVGTVEMRV-GDERVVSSLTTPEATDLHGLFALMRERGVSAAAMEVSSHALALSR 211
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
+D+AVFTNL++DH+DFH +Y +AKA+LF+ PE VVN DD +
Sbjct: 212 VGGTRYDVAVFTNLSQDHLDFHSDLRDYFDAKARLFT----PEYCDIAVVNADDRFGRAL 267
Query: 121 I--AQGNPDVPVVTFAMEN---------KKADVHPLKFELSLFETQVLVNTPHGI-LEIS 168
+ Q + VPV TFA++ +AD + L + + P G+ S
Sbjct: 268 VDMVQADGRVPVTTFAVDGYTDADPATAMEADWRAVDVRLGAMGSAFRIVGPGGMEANAS 327
Query: 169 SGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEE------QAFGV 222
L G N+ N +AA+ + G PLE + G+ VPGR E + Q F
Sbjct: 328 VALPGPFNVSNAMAAIVGLVEAGLPLETAIAGVAAAPGVPGRMEPVVANAVPHAFQDFTA 387
Query: 223 IVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSD 282
+VDY+H P A+ +L ++R + VVGC G+ DR KRPLM + A SD ++T+D
Sbjct: 388 LVDYSHKPGAIEAVLTALRATTEGGLTMVVGCGGDRDRAKRPLMGEAAARLSDQLVITND 447
Query: 283 NPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMG 342
NP EDP+ I ML GV +E+ R+ + R A+R AV
Sbjct: 448 NPRTEDPVSIAASMLEGVAKVPEEHRA--------------RVTVEFDRAEAIRLAVERA 493
Query: 343 EEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
GD+VVVAGKGHET Q + FDDRE R A++
Sbjct: 494 RPGDVVVVAGKGHETGQYVKGEVLPFDDREVLRAAIE 530
>gi|395768558|ref|ZP_10449073.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Streptomyces acidiscabies 84-104]
Length = 544
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 144/376 (38%), Positives = 192/376 (51%), Gaps = 22/376 (5%)
Query: 6 GMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEV 65
G++ +V I GD +++S RTTP+A +Q L A M G E+V ME SSH L+LGR V
Sbjct: 185 GLIGTVETRI-GDEQIKSERTTPEATDLQALFAVMRERGVESVAMEVSSHALSLGRVDGV 243
Query: 66 DFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGN 125
FD+AVF NL+ +HM+FH E+Y AKA LF+ R VVN DD A+
Sbjct: 244 VFDVAVFNNLSPEHMEFHSDMEDYFRAKATLFTAA---RSRRGVVNYDDAYGRRLAAEA- 299
Query: 126 PDVPVVTFAME-NKKADVHPLKFELSLFETQVLVNTPHGI-LEISSGLLGRHNIYNILAA 183
++PVVTF+ E + AD + + ++ V P G L S + G N+ N LAA
Sbjct: 300 -EIPVVTFSAEGDPDADWRAVDVHIGAMDSHFTVVAPDGTRLAARSPIAGPFNVANSLAA 358
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+ G G+ V VPGR E +D Q + +VDYAH DA+ +L ++R++
Sbjct: 359 IVALAEAGIDPRAAAEGVAGVPGVPGRLERVDAGQPYLAVVDYAHKTDAVESVLKALRKV 418
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
R+ V+GC G+ D KR M A +D +LTSDNP +EDPL IL ML G
Sbjct: 419 TKGRLHIVLGCGGDRDVTKRAPMGAAAARLADTAVLTSDNPRSEDPLAILTAMLDGAA-- 476
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
P G L D R A+ AV GD V+VAGKGHE Q
Sbjct: 477 -----------SVPAHERGEVLLFED-RAAAIEAAVGRAHAGDTVLVAGKGHEQGQDIAG 524
Query: 364 KKEFFDDREESREALQ 379
FDDR+ REA+Q
Sbjct: 525 VIRPFDDRQVLREAIQ 540
>gi|419708638|ref|ZP_14236107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mycobacterium abscessus M93]
gi|419713388|ref|ZP_14240815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mycobacterium abscessus M94]
gi|382943913|gb|EIC68224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mycobacterium abscessus M93]
gi|382946798|gb|EIC71081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mycobacterium abscessus M94]
Length = 515
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 198/387 (51%), Gaps = 25/387 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ +V I G++ + S TTP+A +Q L+A+M+ G + VVME SSH LAL R
Sbjct: 148 GKRVGLIGTVGVRIDGED-VPSALTTPEAPALQELLAEMVQRGVDTVVMEVSSHALALNR 206
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS-- 119
F + FTNL+RDH+DFH ++Y KA+LF R HR VV IDD +
Sbjct: 207 VDGTRFAVGAFTNLSRDHLDFHPDMQDYFATKARLFRRDSPQRAHRSVVCIDDDAGRAMA 266
Query: 120 -FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLV-NTPHGILEISSGLLGRHNI 177
+ PDV V+ +++ AD + Q V N P E++ L G +N+
Sbjct: 267 ELAREAGPDVTTVS-SLDGGVADWRCSNVAVGHDGGQRFVANGPDRDTELAIALPGHYNV 325
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N L A+A+ +G GI VPGR E + Q F +VDYAH P AL +L
Sbjct: 326 ANCLVAIAILDVLGVSAATAAPGIATA-GVPGRMEAVAAGQPFLAVVDYAHKPGALRAVL 384
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+S+R R+ V G G DRGKR M K+A + +D+ ++T DNP NE+P I +++
Sbjct: 385 ESLRSHRNGRLAVVFGAGGNRDRGKRADMGKVAAELADLVVVTDDNPRNEEPAAIRTEII 444
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
+G + + ++ G+ RR A+ A GD V+VAGKGHE+
Sbjct: 445 SGTTGSEAQIIEIGD------------------RRAAIDFATLWARPGDTVLVAGKGHES 486
Query: 358 YQIEGDKKEFFDDREESREALQYVDEL 384
Q GD FDDR E R AL+ + L
Sbjct: 487 GQKTGDVTVPFDDRVELRAALEALGSL 513
>gi|70732389|ref|YP_262145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas protegens Pf-5]
gi|68346688|gb|AAY94294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Pseudomonas protegens Pf-5]
Length = 487
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 132/379 (34%), Positives = 212/379 (55%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESP-RTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ HG L+S TTP+ + VQ +A + + G +AV ME SSHGL
Sbjct: 126 LGQRCGLVGTLGTGFHG--ALQSGMHTTPNPIAVQATLADLKNAGAKAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FD+AV TNL+RDH+D+HGT E Y AKAKLF+ + +V+N+DD
Sbjct: 184 GRVAALAFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAW---NDLRCRVINLDDDFGRQ 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
A + + ++T+++E+ A ++ + + + TP G + S LLGR N+ N
Sbjct: 241 LAADKH-ESRLITYSLEDAAAYLYCREARFDDDGVRATLVTPQGEHHLRSCLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + + L++I+ + +++ GR + + V+VDYAHTPDAL ++L +
Sbjct: 300 VLAAVGALLGLEYALDEILAVLPKLEGPAGRMQRLGGGTQPLVVVDYAHTPDALEKVLLA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ DRGKRPLM ++ +D ++T DNP +EDP I DD+ A
Sbjct: 360 LRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRSEDPAQIFDDIRA- 418
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
G++ E +++ R +A+ +A D+VV+AGKGHE YQ
Sbjct: 419 -GFSAAEKVEFVAG-----------------RGLAIARLIASASADDVVVLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREAL 378
++ F D E+ +AL
Sbjct: 461 EINGQRHDFSDLAEADKAL 479
>gi|167764160|ref|ZP_02436287.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC
43183]
gi|167698276|gb|EDS14855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides stercoris ATCC 43183]
Length = 482
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 132/384 (34%), Positives = 203/384 (52%), Gaps = 43/384 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M +G + ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DRPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQQ 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTRSRVYTYSLRS-----------LSDFKGKVLESHFEGMLLDFNNHELAVRFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDSIRSPKGITAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K + SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGW-TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ +Q+ + + R+ A++ A + + GD+++VA
Sbjct: 413 INDMLAGLDKDDLQKTISIAD------------------RKEAIKTACMLAQPGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESR 375
GKGHE YQ K FDD+EE +
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEELK 478
>gi|225009955|ref|ZP_03700427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
MS024-3C]
gi|225005434|gb|EEG43384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
MS024-3C]
Length = 487
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 136/391 (34%), Positives = 206/391 (52%), Gaps = 45/391 (11%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +G++S++ + G+ E+ TTPD + + +M+ G ME SSHG+A R
Sbjct: 131 GYPSGLISTIKILV-GEKAYETAHTTPDVWTINAYLQEMVSEGLSHCFMEVSSHGIAQMR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ F+ A+FTNL++DH+D+H T YR+ K LF + +VN DD N
Sbjct: 190 IKGLTFEGAIFTNLSQDHLDYHKTFANYRDTKKLLFDGL--STTAFALVNSDDKNGL--- 244
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFE-LSLFETQVLVNTPHGIL------EISSGLLGR 174
F ++N KA + ++ F+ Q+L N G L E+ + LLG+
Sbjct: 245 -----------FMLQNTKAKKMSYGLKGVADFKAQILENQFSGQLLKIDQQEVWTTLLGQ 293
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N YNILA A +G ++++ I ++ V GR + + IVDYAHTPDAL
Sbjct: 294 FNAYNILAIYATATLLGLNTLEVLQHISTLENVAGRFQYFISKNQITAIVDYAHTPDALD 353
Query: 235 RLLDSVRELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ ++ + ++ITVVGC G+ D+GKRPLM IA +KSD ILTSDNP +E P+ I
Sbjct: 354 NILETIGQIRTKNEKLITVVGCGGDRDQGKRPLMGAIAAEKSDTVILTSDNPRSETPIAI 413
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
L+ M AGV P+ L + + R+ A++ A M D++++AG
Sbjct: 414 LEQMEAGV----------------SPVDIKKVLVVEN-RKQAIKTACMMATPKDIILIAG 456
Query: 353 KGHETYQ-IEGDKKEFFDDREESREALQYVD 382
KGHE YQ I+G K FDD E + L +D
Sbjct: 457 KGHEKYQDIKGVKTP-FDDYEIVKNHLDLLD 486
>gi|440722120|ref|ZP_20902503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas syringae BRIP34876]
gi|440725829|ref|ZP_20906091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas syringae BRIP34881]
gi|443642435|ref|ZP_21126285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas syringae pv. syringae B64]
gi|440361649|gb|ELP98866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas syringae BRIP34876]
gi|440367972|gb|ELQ05018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas syringae BRIP34881]
gi|443282452|gb|ELS41457.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pseudomonas syringae pv. syringae B64]
Length = 487
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 130/379 (34%), Positives = 208/379 (54%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ +G L+S R TTPD + VQ + + G AV ME SSHGL
Sbjct: 126 LGQRCGIVGTLGTGFYG--SLQSGRHTTPDPIAVQATLTDLRQAGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FD+AV TNL+RDH+D+HGT E Y AKAKLF+ P+ +V+N+DD
Sbjct: 184 GRAAALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAW---PDLKCRVINLDDDFGRE 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
A + ++T++ + A ++ + + + TP G + S LLGR N+ N
Sbjct: 241 LAAV-KQESRLITYSQLDSTAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + + L++I++ + +++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 300 VLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLGGADKPLVVVDYAHTPDALEKVLEA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ DRGKRPLM ++ +D +T DNP +E P+ I DD+
Sbjct: 360 LRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDIRP- 418
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
G+ + +++ E R A+ +A D+VV+AGKGHE YQ
Sbjct: 419 -GFVAADKVRFIEG-----------------RGQAIAELIASANADDVVVLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREAL 378
+++ F D +E+ AL
Sbjct: 461 EINGQRQPFSDLQEAASAL 479
>gi|406672323|ref|ZP_11079549.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bergeyella zoohelcum
CCUG 30536]
gi|405588011|gb|EKB61729.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bergeyella zoohelcum
CCUG 30536]
Length = 486
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 130/374 (34%), Positives = 199/374 (53%), Gaps = 29/374 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + ++S+V Y I D L + TTPD + + ++A+ + G E ME SSHG+
Sbjct: 129 LGYPSALISTVEYRI-ADEILPATHTTPDIITLNRILAQAVEKGCEYAFMEVSSHGIHQH 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + F IA FTN+T DH+D+H T EY N K + F + PE + NIDD N
Sbjct: 188 RIEGLHFSIAGFTNITHDHLDYHKTFLEYLNTKKRFFDDL--PETAVAITNIDDKNGNVM 245
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N ++A++ AD H E+ + N E + L G+ N+ N+
Sbjct: 246 LQ--NTKARKKSYAVKT-MADYHGKLLEIDFNGMLLHFNGK----EFWTTLTGKFNVSNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
L A+ +G +I++ + ++ V GR E I + +VDYAHTPDAL +LDS+
Sbjct: 299 LLVFAIAHELGFGENEILQALSQLKRVNGRFETIKSDGGIIFVVDYAHTPDALENVLDSI 358
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ + R+I V GC G+ D+ KRP M K+AT K+ ++I+TSDNP E+P I+ ++ A
Sbjct: 359 NEIRTKNERLICVFGCGGDRDKEKRPEMGKVATKKATLSIITSDNPRTEEPSQIIKEIEA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ Q + K Y +P+ R+ A++ A+ E D+++VAGKGHETY
Sbjct: 419 GI--EAQNFSK------YTSIPD---------RKEAIKMAIKFAEPKDIILVAGKGHETY 461
Query: 359 QIEGDKKEFFDDRE 372
Q K FDD+E
Sbjct: 462 QEVNGIKHHFDDKE 475
>gi|198274312|ref|ZP_03206844.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135]
gi|198272802|gb|EDY97071.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides plebeius DSM 17135]
Length = 485
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 131/381 (34%), Positives = 202/381 (53%), Gaps = 43/381 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI G+ + + TTPD + + L+ +M G + V ME SSH +
Sbjct: 129 FGYKAGLISTVCNYIDGE-AIPTDHTTPDPITLNQLLGRMADEGCKYVFMEVSSHSVVQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTN+TRDH+D+H T E Y AK F + P++ + N+DD N T
Sbjct: 188 RISGLTFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDNL--PKQAFALTNLDDKNGT-- 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V +++ + L F+ +VL ++ G+L E++ +GR
Sbjct: 244 VMTQNTQAKVAAYSLHS-----------LCDFKGKVLEDSFDGMLLDINNREVNVQFIGR 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA +G EDI+ + + V GR + + + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVYGAACLLGKRPEDILVKLSMLRPVSGRFDAKRSPKGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVRELAPRR--IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ E+ R +ITVVG G D+GKRPLM K + +SD I+TSDNP E+P DI
Sbjct: 353 NVLEAIHEVLRGRGQVITVVGAGGNRDKGKRPLMAKESAQRSDKVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGW-TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ + + R+ A+R A + + D++++A
Sbjct: 413 INDMLAGLSKDDMKKVISIVD------------------RKEAIRTACMLAQPQDVILIA 454
Query: 352 GKGHETYQIEGDKKEFFDDRE 372
GKGHETYQ K FDD+E
Sbjct: 455 GKGHETYQDVKGVKSHFDDKE 475
>gi|336178971|ref|YP_004584346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Frankia symbiont of Datisca glomerata]
gi|334859951|gb|AEH10425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Frankia symbiont of Datisca glomerata]
Length = 575
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 149/381 (39%), Positives = 195/381 (51%), Gaps = 29/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +V + G L S RTTP+A +Q L+A M G A ME SSH +AL R
Sbjct: 208 GHTTGLIGTVQTRLAG-TVLPSVRTTPEATDLQALLAVMAERGVTAAAMEVSSHAVALHR 266
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
+ F A FTNL++DH+DFH + E+Y AKA LF+ PER V++ D P
Sbjct: 267 VGGIRFAGAAFTNLSQDHLDFHPSMEDYFAAKAALFT----PERTGVSVIDTDTPWGRQL 322
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNT--PHGI-LEISSGLLGRHNI 177
A VP AD H +++ T PHG+ + + L G N+
Sbjct: 323 AAA----VPGAITC--GTAADAHWRAVDVTAGPTGTTFRALGPHGVDVRVGIALPGAFNV 376
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N L A+A+ +A G P G+ + VPGR E +D Q F +VDYAHTPDA+ LL
Sbjct: 377 GNALVALALLVATGVPAPVAAAGLASLPGVPGRMERVDAGQPFLGLVDYAHTPDAVQTLL 436
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+VR L R+I V+GC G+ DR KRPLM A +D+ I TSDNP +EDP I+ M
Sbjct: 437 RTVRPLVSGRVIVVLGCGGDRDRRKRPLMGAAAAAGADLAIFTSDNPRSEDPELIIAQMC 496
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GVG PP G R+ + R A+R AV GD VV+AGKGHET
Sbjct: 497 TGVG-------------TLPPSARG-RVMVEPDRAAAIRRAVGFARPGDAVVLAGKGHET 542
Query: 358 YQIEGDKKEFFDDREESREAL 378
Q + FDDR+ R L
Sbjct: 543 GQEQAGVVTPFDDRDVLRAEL 563
>gi|297544898|ref|YP_003677200.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842673|gb|ADH61189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 483
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 132/375 (35%), Positives = 209/375 (55%), Gaps = 27/375 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I GD + S TTP+++ +Q L + M++ G + VVME SSH LAL R +
Sbjct: 130 KVGLVGTIQNMI-GDEVIPSEHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALKRVN 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E +FDIAVFTNL++DH+DFH EEY K+KLF + V+NIDD ++ I
Sbjct: 189 ECEFDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFKMA----KRASVINIDDKYSSMMIES 244
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
V+T+ +++ A V SL + V E+S + G ++YN LAA
Sbjct: 245 SKA--RVLTYGIKD-FAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLFSVYNALAA 301
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+ V +G L + + +V V GR E ++ + F V +DYAHTPD + ++++++E
Sbjct: 302 ITVADFLGISLRSVREALSQV-TVKGRFEPVETGKDFYVFIDYAHTPDGIQNMMEALKEY 360
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
R I + G G+ D+ KRPLM ++A +D ILTSDNP +E+P +I+ + G+ T
Sbjct: 361 KAGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEEPREIISQIEEGIKKT 420
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
Y+ + + R+ A+R A+ ++ D++++AGKGHETYQI G+
Sbjct: 421 DCPYV------------------VIENRKEAIRYALLNAQKDDVIILAGKGHETYQIIGN 462
Query: 364 KKEFFDDREESREAL 378
K FD+RE +E L
Sbjct: 463 KVIPFDEREIVKEIL 477
>gi|291514758|emb|CBK63968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelat e ligase
[Alistipes shahii WAL 8301]
Length = 484
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 136/378 (35%), Positives = 196/378 (51%), Gaps = 31/378 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G++S+V Y I G ++E+ TTPD++ + +M +M G ME SSH +
Sbjct: 130 MGYKAGLISTVVYKIDG-REVEATHTTPDSIRLNAMMREMADAGCAYCFMECSSHAIVQE 188
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R +DF +F+N+T DH+D+H T EY AK F + P+ + N DD N
Sbjct: 189 RTRGLDFAGGIFSNITHDHLDYHKTFAEYIRAKKLFFDGL--PKGAFALTNADDRNGRVM 246
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N V +++ AD E+ L + ++ E+ GLLGR N YN+
Sbjct: 247 VQ--NTAAAVSAYSLR-AMADFRCKIVEMHLDGMLLRIDGQ----ELWVGLLGRFNAYNL 299
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +G +++R + + AV GR E I IVDYAHTPDAL ++ ++
Sbjct: 300 LAVYGAAALLGLNRGEVLRVLSMLHAVSGRFEKIRAANGTTAIVDYAHTPDALENVIQTI 359
Query: 241 RELAP--RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ +++I V GC G+ DR KRP M IA + + TSDNP +E P ILDDM+A
Sbjct: 360 EEIRTPGQQLIVVCGCGGDRDRTKRPEMAAIAVKYATTAVFTSDNPRHESPEAILDDMVA 419
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ P L + D R A+R AV + GD+++VAGKGHETY
Sbjct: 420 GLE------------------PGARYLRIAD-RAEAIRTAVMLSRPGDIILVAGKGHETY 460
Query: 359 QIEGDKKEFFDDREESRE 376
QI GD K FDDREE ++
Sbjct: 461 QIVGDVKHPFDDREEIKK 478
>gi|456821613|gb|EMF70119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira interrogans serovar Canicola str.
LT1962]
Length = 504
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 133/383 (34%), Positives = 205/383 (53%), Gaps = 28/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ G++ ++ GD +++ TTPDA + ++ +M G V MEASSHGL LGR
Sbjct: 141 GINCGLIGTIGVKF-GDRVIDTGYTTPDASSLNLILKEMKEEGITTVFMEASSHGLKLGR 199
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF- 120
+ + VFTNLT+DH+DFH E+Y +K +LF + + V++ PN +
Sbjct: 200 MNGISVSAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDFSKSTFAVLDYSAPNGSKLY 259
Query: 121 --IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTP-HGILEISSGLLGRHNI 177
I PD+ + +A+++ L+L T ++ P + +IS+ LLG N+
Sbjct: 260 HKILNRFPDLLI--YALDDIYRKWKISDISLNLQGTSYVLGLPGNQKRKISTNLLGSFNV 317
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRL 236
N A GI +G LE + +E++ +PGR ++I ++++ +VDYAHTPDAL +
Sbjct: 318 RNTALAFLTGIGIGLDLEKMSNSLEKIPQIPGRFQIIYSKDRSRMAVVDYAHTPDALENI 377
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ SVR+ P+ +IT+ GC G+ DR KRP M +IA + SD ILTSDNP E P ILD++
Sbjct: 378 IRSVRDSQPKCLITLFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEI 437
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGH 355
G +G L ++ R A+ ++ EG ++VAGKGH
Sbjct: 438 QTG-------------------FSSGFIPLLREVDRAKAIVEGISCLPEGGCLLVAGKGH 478
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E YQI G +K F D EE ++A
Sbjct: 479 EEYQIIGKEKRHFSDVEEVQKAF 501
>gi|417761121|ref|ZP_12409135.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira interrogans str. 2002000624]
gi|417775485|ref|ZP_12423338.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira interrogans str. 2002000621]
gi|418672610|ref|ZP_13233946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira interrogans str. 2002000623]
gi|409943115|gb|EKN88718.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira interrogans str. 2002000624]
gi|410574810|gb|EKQ37839.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira interrogans str. 2002000621]
gi|410580298|gb|EKQ48123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira interrogans str. 2002000623]
Length = 504
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 134/383 (34%), Positives = 205/383 (53%), Gaps = 28/383 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ G++ ++ GD +++ TTPDA + ++ +M G V MEASSHGL LGR
Sbjct: 141 GINCGLIGTIGVKF-GDRVIDTGYTTPDASSLNLILKEMKEEGITTVFMEASSHGLKLGR 199
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF- 120
+ + VFTNLT+DH+DFH E+Y +K +LF + + V++ PN +
Sbjct: 200 MNGISVRAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDFSKSTFAVLDYSAPNGSKLY 259
Query: 121 --IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTP-HGILEISSGLLGRHNI 177
I PD+ + +K V + L+L T +++ P + +IS+ LLG N+
Sbjct: 260 HKILNRFPDLLIYALDDIYRKWKVSDI--SLNLQGTSYVLSLPGNQKRKISTNLLGSFNV 317
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRL 236
N A GI +G LE + +E++ +PGR ++I ++++ +VDYAHTPDAL +
Sbjct: 318 RNTALAFLTGIGIGLDLEKMSNSLEKIPQIPGRFQIIYSKDRSRMAVVDYAHTPDALENI 377
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
+ SVR+ P+ +IT+ GC G+ DR KRP M +IA + SD ILTSDNP E P ILD++
Sbjct: 378 IRSVRDSQPKCLITLFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEI 437
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGH 355
G +G L ++ R A+ ++ EG ++VAGKGH
Sbjct: 438 QTG-------------------FSSGFIPLLREVDRAKAIVEGISCLPEGGCLLVAGKGH 478
Query: 356 ETYQIEGDKKEFFDDREESREAL 378
E YQI G +K F D EE ++A
Sbjct: 479 EEYQIIGKEKRHFSDVEEVQKAF 501
>gi|410450732|ref|ZP_11304764.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira sp. Fiocruz LV3954]
gi|410015454|gb|EKO77554.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Leptospira sp. Fiocruz LV3954]
Length = 497
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 197/365 (53%), Gaps = 24/365 (6%)
Query: 17 GDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLT 76
GD +++ TTPDA + ++ +M G V MEASSHGL LGR + + VFTNLT
Sbjct: 151 GDRSIDTGYTTPDASSLNLILKQMKDEGVTTVFMEASSHGLKLGRMNGISLKAGVFTNLT 210
Query: 77 RDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAME 136
+DH+DFH E+Y +K +LF + + V++ P + ++P+ A++
Sbjct: 211 QDHLDFHSDMEDYFESKFRLFEILDVSKSPFAVLDYTSPGGDKLYRKIGNNLPIK--ALD 268
Query: 137 NKKADVHPLKFELSLFETQVLVNTPHGILE-ISSGLLGRHNIYNILAAVAVGIAVGAPLE 195
+ L+L T +++ P + +S+ LLG N+ N A G+ +G E
Sbjct: 269 GIGNEYRVSDLSLNLQGTSYVLSLPGNRRQSVSTNLLGSFNVRNTALAFLTGLGIGLDQE 328
Query: 196 DIVRGIEEVDAVPGRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGC 254
++ + E+ +PGR +++ ++++ +VDYAHTPDAL ++ SVR P+R+IT+ GC
Sbjct: 329 RMLSSLREIPQIPGRFQIVYSKDRSRMAVVDYAHTPDALENIIRSVRNSQPKRLITLFGC 388
Query: 255 AGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314
G+ DR KRP M +IA + SD ILTSDNP E P ILD++ +G
Sbjct: 389 GGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPESILDEIQSG--------------- 433
Query: 315 YYPPLPNGHRLFLHDIRRV-AVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREE 373
+ P G L ++ R A+ VA+ EG ++VAGKGHE YQI G +K F D EE
Sbjct: 434 -FSP---GFIPLLREVDRARAISEGVAVLPEGGCLLVAGKGHEEYQIIGKEKRHFSDVEE 489
Query: 374 SREAL 378
R+A
Sbjct: 490 VRKAF 494
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,559,251,696
Number of Sequences: 23463169
Number of extensions: 285275005
Number of successful extensions: 774436
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8515
Number of HSP's successfully gapped in prelim test: 6630
Number of HSP's that attempted gapping in prelim test: 745365
Number of HSP's gapped (non-prelim): 17794
length of query: 402
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 257
effective length of database: 8,957,035,862
effective search space: 2301958216534
effective search space used: 2301958216534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)