BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041678
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WTZ|A Chain A, Mure Ligase Of Mycobacterium Tuberculosis
pdb|2WTZ|B Chain B, Mure Ligase Of Mycobacterium Tuberculosis
pdb|2WTZ|C Chain C, Mure Ligase Of Mycobacterium Tuberculosis
pdb|2WTZ|D Chain D, Mure Ligase Of Mycobacterium Tuberculosis
pdb|2XJA|A Chain A, Structure Of Mure From M.Tuberculosis With Dipeptide And
Adp
pdb|2XJA|B Chain B, Structure Of Mure From M.Tuberculosis With Dipeptide And
Adp
pdb|2XJA|C Chain C, Structure Of Mure From M.Tuberculosis With Dipeptide And
Adp
pdb|2XJA|D Chain D, Structure Of Mure From M.Tuberculosis With Dipeptide And
Adp
Length = 535
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 184/376 (48%), Gaps = 32/376 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G G++ ++ + G + L S TTP+A +Q ++A M+ G + VVME SSH LALGR
Sbjct: 172 GRVAGLIGTIGIRVGGAD-LPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR 230
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPE---RHR-KVVNIDDPNA 117
F + FTNL+RDH+DFH + +Y A A LF DP+ R R VV IDD
Sbjct: 231 VDGTRFAVGAFTNLSRDHLDFHPSMADYFEAXASLF----DPDSALRARTAVVCIDDDAG 286
Query: 118 TSFIAQGNPDVPVVTF--AMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+ A+ + V + DV P F H I L GR+
Sbjct: 287 RAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGH---HIGIRLPGRY 343
Query: 176 NIYNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+ N L E V G+ E+ VPGR E ID Q F +VDYAH P+AL
Sbjct: 344 NVANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQIDRGQGFLALVDYAHKPEALRS 402
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
+L ++ RR+ V G G+ D GKR M +IA +D+ ++T DNP +EDP I +
Sbjct: 403 VLTTLAH-PDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRRE 461
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
+LAG + G + + + RR A+R AVA GD+V++AGKGH
Sbjct: 462 ILAGAA-------EVGGDAQVVEIAD---------RRDAIRHAVAWARPGDVVLIAGKGH 505
Query: 356 ETYQIEGDKKEFFDDR 371
ET Q G + FDDR
Sbjct: 506 ETGQRGGGRVRPFDDR 521
>pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide
Synthetase From E. Coli
pdb|1E8C|B Chain B, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide
Synthetase From E. Coli
Length = 498
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 123/351 (35%), Positives = 178/351 (50%), Gaps = 29/351 (8%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TT AV VQ+ +A ++ G E SSHGL R + + F +VFTNL+RDH+D+HG
Sbjct: 157 TTGSAVDVQHELAGLVDQGATFCAXEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGD 216
Query: 86 EEEYRNAKAKLFSRMVDPERH--RKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVH 143
E Y A L+S E H + ++N DD ++A+ V V N
Sbjct: 217 XEHYEAAXWLLYS-----EHHCGQAIINADDEVGRRWLAKLPDAVAVSXEDHINPNCHGR 271
Query: 144 PLKF-ELSLFETQVLV--NTPHGILEISSGLLGRHNIYNILXXXXXXXXXXXPLEDIVRG 200
LK E++ ++ + ++ G EI S L G N+ N+L PL D+++
Sbjct: 272 WLKATEVNYHDSGATIRFSSSWGDGEIESHLXGAFNVSNLLLALATLLALGYPLADLLKT 331
Query: 201 IEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDR 260
+ V GR E+ V+VDYAHTPDAL + L + R ++ V GC G+ D+
Sbjct: 332 AARLQPVCGRXEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK 391
Query: 261 GKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLP 320
GKRPL IA + +DV ++T DNP E+P I++D+LAG L
Sbjct: 392 GKRPLXGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGX------------------LD 433
Query: 321 NGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDR 371
GH + + R AV CAV +E D+V+VAGKGHE YQI G+++ + DR
Sbjct: 434 AGH-AKVXEGRAEAVTCAVXQAKENDVVLVAGKGHEDYQIVGNQRLDYSDR 483
>pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmuramate-Alanine Ligase
Murc (Tm0231) From Thermotoga Maritima At 2.3 A
Resolution
Length = 469
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 19/186 (10%)
Query: 71 VFTNLTRDHMDFHGTE-EEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVP 129
+ TN DH++ +G YR+A K+ SR D VV + TS + V
Sbjct: 186 IITNARGDHLENYGNSLTRYRSAFEKI-SRNTDL-----VVTFAEDELTSHLGDVTFGVK 239
Query: 130 VVTFAMENKKADVHPLKFELSLFETQVLV-NTPHGILEISSGLLGRHNIYNILXXXXXXX 188
T+ +E + A S E + V LE+ + G HN+ N L
Sbjct: 240 KGTYTLEXRSA---------SRAEQKAXVEKNGKRYLELKLKVPGFHNVLNALAVIALFD 290
Query: 189 XXXXPLEDIVRGIEEVDAVPGRCELI--DEEQAFGVIVDYAHTPDALSRLLDSVRELAPR 246
L ++ +EE V R + D E VI DYAHTPD + LL + +E+
Sbjct: 291 SLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFEN 350
Query: 247 RIITVV 252
I V+
Sbjct: 351 EKIVVI 356
>pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
Resolution
pdb|1GG4|B Chain B, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
Resolution
Length = 452
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 9/135 (6%)
Query: 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP---NATSFIAQGNPDVPVVTFAM 135
H++ G+ AK ++FS + PE + N D+ N S I V F+
Sbjct: 188 HLEGFGSLAGVAKAKGEIFSGL--PENGIAIXNADNNDWLNWQSVIGSRK----VWRFSP 241
Query: 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILXXXXXXXXXXXPLE 195
+D ++ T+ + TP G +++ L GRHNI N L L+
Sbjct: 242 NAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSXSVGATLD 301
Query: 196 DIVRGIEEVDAVPGR 210
I G+ + AVPGR
Sbjct: 302 AIKAGLANLKAVPGR 316
>pdb|3HN7|A Chain A, Crystal Structure Of A Murein Peptide Ligase Mpl
(Psyc_0032) From Psychrobacter Arcticus 273-4 At 1.65 A
Resolution
Length = 524
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 173 GRHNIYNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
G HN+ N L ++ + + R ELI + V D+AH P A
Sbjct: 340 GLHNVNNALVAIAAAYNIGVSVKTACAALSAFAGIKRRXELIGDVNDILVFDDFAHHPTA 399
Query: 233 LSRLLDSV-RELAPRRIITVV 252
++ LD ++LA RR+ ++
Sbjct: 400 ITTTLDGAKKKLADRRLWAII 420
>pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D-
Glutamate (Murd) Ligase From Streptococcus Agalactiae To
1.5a
Length = 451
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAK 93
N + +V E SS L E IAV TNL H+D+HG+ E+Y AK
Sbjct: 159 NDKDTLVXELSS--FQLXGVKEFRPHIAVITNLXPTHLDYHGSFEDYVAAK 207
>pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp
pdb|1W7K|A Chain A, E.Coli Folc In Complex With Adp, Without Folate Substrate
Length = 422
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 24/199 (12%)
Query: 65 VDFDIAVFTNLTRDHMDFHGTE-EEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
VD D+AV T++ DH D+ G + E A +F R K + +P S IA
Sbjct: 159 VDADVAVVTSIALDHTDWLGPDRESIGREXAGIF-------RSEKPAIVGEPEMPSTIA- 210
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILE-ISSGLLGRHNIYNILX 182
DV A+ ++ +++ S+ + + HG LE + L+ + N L
Sbjct: 211 ---DVAQEKGALLQRRG----VEWNYSVTDHDWAFSDAHGTLENLPLPLVPQPNAATALA 263
Query: 183 XXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRE 242
E+ +R +PGR +++ E VI D AH P A L ++
Sbjct: 264 ALRASGLEVS--ENAIRDGIASAILPGRFQIVSESPR--VIFDVAHNPHAAEYLTGRMKA 319
Query: 243 LAPR--RIITVVGCAGESD 259
L P+ R++ V+G + D
Sbjct: 320 L-PKNGRVLAVIGMLHDKD 337
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 21/103 (20%)
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
WT L+YG P G +F RC ++ +E KG + +Q +
Sbjct: 267 WTAISALEYG----VPVTLIGEAVF--------ARCLSSLKDERIQASKKLKGPQKFQFD 314
Query: 362 GDKKEFFDDREESREALQYVDE------LHQAGIDTSEFPWRL 398
GDKK F +D ++ A + + L QA +EF W L
Sbjct: 315 GDKKSFLEDIRKALYASKIISYAQGFMLLRQA---ATEFGWTL 354
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 21/103 (20%)
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
WT L+YG P G +F RC ++ +E KG + +Q +
Sbjct: 288 WTAISALEYG----VPVTLIGEAVF--------ARCLSSLKDERIQASKKLKGPQKFQFD 335
Query: 362 GDKKEFFDDREESREALQYVDE------LHQAGIDTSEFPWRL 398
GDKK F +D ++ A + + L QA +EF W L
Sbjct: 336 GDKKSFLEDIRKALYASKIISYAQGFMLLRQA---ATEFGWTL 375
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 349 VVAGKGHETYQIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPE 400
+ AG+G Q G KEFFD+ EES+E + E GID E + PE
Sbjct: 7 LFAGQGA---QYVGMGKEFFDNFEESKEVFKRSSE--ALGIDMEELCFNDPE 53
>pdb|2GCA|A Chain A, Apo Form Of L. Casei Fpgs
Length = 428
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 208 PGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259
P R E I + +++D AH PD ++ L+ ++++L + I + G + D
Sbjct: 298 PARLEKISDTPL--IVIDGAHNPDGINGLITALKQLFSQPITVIAGILADKD 347
>pdb|2GCB|A Chain A, G51sS52T DOUBLE MUTANT OF L. CASEI FPGS
Length = 428
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 208 PGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259
P R E I + +++D AH PD ++ L+ ++++L + I + G + D
Sbjct: 298 PARLEKISDTPL--IVIDGAHNPDGINGLITALKQLFSQPITVIAGILADKD 347
>pdb|2GC6|A Chain A, S73a Mutant Of L. Casei Fpgs
Length = 428
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 208 PGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259
P R E I + +++D AH PD ++ L+ ++++L + I + G + D
Sbjct: 298 PARLEKISDTPL--IVIDGAHNPDGINGLITALKQLFSQPITVIAGILADKD 347
>pdb|1FGS|A Chain A, Folylpolyglutamate Synthetase From Lactobacillus Casei
Length = 428
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 208 PGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259
P R E I + +++D AH PD ++ L+ ++++L + I + G + D
Sbjct: 298 PARLEKISDTPL--IVIDGAHNPDGINGLITALKQLFSQPITVIAGILADKD 347
>pdb|2GC5|A Chain A, G51s Mutant Of L. Casei Fpgs
Length = 428
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 208 PGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259
P R E I + +++D AH PD ++ L+ ++++L + I + G + D
Sbjct: 298 PARLEKISDTPL--IVIDGAHNPDGINGLITALKQLFSQPITVIAGILADKD 347
>pdb|1JBV|A Chain A, Fpgs-Amppcp Complex
pdb|1JBW|A Chain A, Fpgs-Amppcp-Folate Complex
Length = 428
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 208 PGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259
P R E I + +++D AH PD ++ L+ ++++L + I + G + D
Sbjct: 298 PARLEKISDTPL--IVIDGAHNPDGINGLITALKQLFSQPITVIAGILADKD 347
>pdb|1H6W|A Chain A, Crystal Structure Of A Heat- And Protease-Stable Fragment
Of The Bacteriophage T4 Short Fibre
Length = 312
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 133 FAMENKKADVHPLKFELSL---FETQVLVNTPHGILEISS 169
A N ++ + P KF ++L FET+V + +G+++ISS
Sbjct: 23 IAGVNNESSITPAKFTVALNNVFETRVSTESSNGVIKISS 62
>pdb|4HV4|A Chain A, 2.25 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylmuramate--L- Alanine Ligase (Murc) From
Yersinia Pestis Co92 In Complex With Amp
pdb|4HV4|B Chain B, 2.25 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylmuramate--L- Alanine Ligase (Murc) From
Yersinia Pestis Co92 In Complex With Amp
Length = 494
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 80/205 (39%), Gaps = 37/205 (18%)
Query: 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVD-PERHRKVVNIDDP-----------N 116
+A+ TN+ DHMD + + ++ N K + + + P R V+ IDDP +
Sbjct: 192 VAIVTNIEADHMDTY--QGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRVGRH 249
Query: 117 ATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHN 176
T++ + DV + ++ E + + + L E V +N P GRHN
Sbjct: 250 ITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIE--VTLNAP-----------GRHN 296
Query: 177 IYNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELI---------DEEQAFGVIVDYA 227
N EDI+R + R + + +E + ++ DY
Sbjct: 297 ALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYG 356
Query: 228 HTPDALSRLLDSVRELAP-RRIITV 251
H P + + + R P +RI+ +
Sbjct: 357 HHPTEVDATIKAARAGWPDKRIVML 381
>pdb|2BWM|A Chain A, 1.8a Crystal Structure Of Of Psathyrella Velutina Lectin
In Complex With Methyl
2-Acetamido-1,2-Dideoxy-1-Seleno-Beta- D-Glucopyranoside
pdb|2BWR|A Chain A, Crystal Structure Of Psathyrella Velutina Lectin At 1.5a
Resolution
pdb|2BWR|B Chain B, Crystal Structure Of Psathyrella Velutina Lectin At 1.5a
Resolution
pdb|2C25|A Chain A, 1.8a Crystal Structure Of Psathyrella Velutina Lectin In
Complex With N-Acetylneuraminic Acid
pdb|2C25|B Chain B, 1.8a Crystal Structure Of Psathyrella Velutina Lectin In
Complex With N-Acetylneuraminic Acid
pdb|2C4D|A Chain A, 2.6a Crystal Structure Of Psathyrella Velutina Lectin In
Complex With N-Acetylglucosamine
Length = 401
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 290 LDILDDMLAGVGWTMQEYLKYGENDY 315
+ ++DDM GWT+Q+ ++Y N Y
Sbjct: 375 MKLIDDMTVSKGWTLQKTVRYAANLY 400
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 21/103 (20%)
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
WT L+YG P G +F RC ++ +E KG + E
Sbjct: 265 WTAISALEYG----VPVTLIGEAVF--------ARCLSSLKDERIQASKKLKGPQNIPFE 312
Query: 362 GDKKEFFDDREESREALQYVDE------LHQAGIDTSEFPWRL 398
GDKK F +D ++ A + + L QA +EF W L
Sbjct: 313 GDKKSFLEDIRKALYASKIISYAQGFMLLRQA---ATEFGWTL 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,099,944
Number of Sequences: 62578
Number of extensions: 506531
Number of successful extensions: 1150
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1123
Number of HSP's gapped (non-prelim): 28
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)