BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041678
(402 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5L0Y0|MURE_GEOKA UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Geobacillus kaustophilus (strain HTA426)
GN=murE PE=3 SV=1
Length = 489
Score = 279 bits (713), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 159/382 (41%), Positives = 230/382 (60%), Gaps = 26/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +V + GD + TTP+++++Q +M+ G E V ME SSH L GR
Sbjct: 127 GKKTGLIGTVHIKV-GDRSYPAANTTPESLILQRTFKQMVDEGVEFVAMEVSSHALHQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+HGT EEYRNAK LF+++ + R+ V+N DDP +
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P+VT+ M +K+DV + ++ + TPHG + + L+G N+
Sbjct: 246 QYY--KHMTAAPIVTYGMR-EKSDVMAEQIRMTAGGMAFRLCTPHGSAAVETKLVGSFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YNILAA A +A G LE I + +V+ VPGR E +DE Q F +IVDYAHTPD+L L
Sbjct: 303 YNILAAAAACLASGFSLETIAAALADVEPVPGRFETVDEGQNFTIIVDYAHTPDSLENAL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+VR+LA R + V+GC G+ D KRPLM ++A +DV I TSDNP +EDP IL DM
Sbjct: 363 KTVRQLAKRNVYVVIGCGGDRDPSKRPLMAQVAVRYADVAIFTSDNPRSEDPKQILRDME 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV + +++ +P+ R A+R A+ +EGD+V++AGKGHET
Sbjct: 423 AGVSAEIGKHVT---------IPD---------REEAIRYAIGQAQEGDVVLIAGKGHET 464
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI G+ FDDR +R A++
Sbjct: 465 YQIIGNDVIEFDDRAVARAAVK 486
>sp|Q81WC7|MURE_BACAN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacillus anthracis GN=murE PE=3 SV=1
Length = 491
Score = 275 bits (702), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q AKM+ +G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +DV ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 VEYMR--STAATVVTYGIDTT-SDVMAKDIAMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+E+ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G NG+ + R+ A+ A+ + D++++AGKGHET
Sbjct: 423 HG--------------------ANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G FDDRE ++EA+
Sbjct: 463 YQIIGKDVHHFDDREVAKEAI 483
>sp|Q03523|MURE_BACSU UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacillus subtilis (strain 168) GN=murE PE=3
SV=1
Length = 494
Score = 274 bits (700), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 158/381 (41%), Positives = 223/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ Y GD L TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 128 GKRTGLIGTM-YMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T +EYR+AK+ LFS++ H R V+N DD +
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEAS 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + + T+ ++N ADV ++ T + T G I+ L+G+ N+
Sbjct: 247 AYF--EKVTAAHISTYGIKND-ADVMAKNISITAQGTSFDLVTNKGTKHITMSLVGQFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAAVA IA G P E I +EE+ V GR EL++++Q F VIVDYAHTPD+L +L
Sbjct: 304 YNVLAAVATCIAAGIPFEIITEAVEELHGVRGRFELVNQQQEFPVIVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ R++ ++ VVGC G+ D+ KRP M KIA + +D I TSDNP +EDP IL DM
Sbjct: 364 ETCRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV EN YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 AGV-----------ENAYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 464 YQQIGNETFDFDDAEVAARAI 484
>sp|A4IM04|MURE_GEOTN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=murE PE=3 SV=1
Length = 489
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 158/382 (41%), Positives = 226/382 (59%), Gaps = 26/382 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +V I GD + TTP+++++Q +M+ G E V ME SSH L GR
Sbjct: 127 GKKIGLIGTVGTKI-GDRSYPAVNTTPESLVLQRTFKQMVDEGVEFVTMEVSSHALHQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+HGT EEYRNAK LF+++ + R+ V+N DDP +
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVS 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + P++T+ ++ +K+DV + E++ + TPHG + I + L+G N+
Sbjct: 246 QYY--KHMTAAPIITYGIK-EKSDVMAEQIEMTPGGMAFQLCTPHGTMAIETKLVGLFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A +A G L I + V VPGR E +DE Q F VIVDYAHTPD++ L
Sbjct: 303 YNLLAATAACLASGFSLATIAEALANVSPVPGRFETVDEGQNFTVIVDYAHTPDSVENAL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+VR+ A R + V+GC G+ DR KRPLM + A +DV + TSDNP +EDP IL DM
Sbjct: 363 KTVRQFAKRNVYVVIGCGGDRDRTKRPLMAQAAVRYADVAVFTSDNPRSEDPRQILRDME 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AGV + Y +P+ R A+R A+ +EGD+V++AGKGHET
Sbjct: 423 AGVS---------AGDGTYVTIPD---------REEAIRYAIGQAQEGDVVLIAGKGHET 464
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQI GD FDDR +R A++
Sbjct: 465 YQIIGDDVIDFDDRAVARAAVK 486
>sp|Q819Q0|MURE_BACCR UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=murE PE=3 SV=1
Length = 491
Score = 271 bits (694), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 227/381 (59%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ +++ I GD E TTPDA+ +Q +KM+ G ++ VME SSH L LGR
Sbjct: 127 GHKTGLIGTINMKI-GDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVFTNLT+DH+D+H T EEY++AK LF+++ + H + V+N DD
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVT 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
++ + VVT+ ++ +D+ ++ T + TP+ + ++ L+G+ N+
Sbjct: 246 EEYMR--STAATVVTYGIDTT-SDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A G+ G LE I+ I+++ VPGR E++D Q + VIVDYAHTPD+L +L
Sbjct: 303 YNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ ++ A + +VGC G+ DR KRP+M +AT + I TSDNP +EDP ILDDM+
Sbjct: 363 KTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMV 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
G G+N Y + + R+ A+ A+A + D++++AGKGHET
Sbjct: 423 HGAS---------GKN--YEMIID---------RKEAIHHAIAKAKADDIIIIAGKGHET 462
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQI G + FDDRE ++EA+
Sbjct: 463 YQIIGKEVHHFDDREVAKEAI 483
>sp|Q8Y5L9|MURE_LISMO UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e) GN=murE PE=3 SV=1
Length = 491
Score = 268 bits (684), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 145/380 (38%), Positives = 222/380 (58%), Gaps = 23/380 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDP--ERHRKVVNIDDPNATS 119
D+D+AVF NL++DH+D+H T EEY NAK+ LF+++ + + K+ ++ +A S
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDAES 245
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
Q ++TF ++ ++AD +++ + + TP G + ++G ++YN
Sbjct: 246 VRMQKATAAHIITFGIK-QEADFQASNIKITSHGSTFDLGTPVGNFTLKIKMIGNFSVYN 304
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAA+A A+ P+E ++ +E + V GR EL+ Q F VIVDYAHTPD L +L++
Sbjct: 305 VLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTPDGLLNVLET 364
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+ G
Sbjct: 365 IDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPRAIIEDMIQG 424
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
V P +H+ RR A+R AV E GD++++AGKGHE YQ
Sbjct: 425 V-------------------PESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKGHEDYQ 465
Query: 360 IEGDKKEFFDDREESREALQ 379
+ GD+ FDDR E+R A++
Sbjct: 466 VVGDEVIDFDDRVEARIAIE 485
>sp|Q71XX5|MURE_LISMF UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Listeria monocytogenes serotype 4b (strain
F2365) GN=murE PE=3 SV=1
Length = 491
Score = 265 bits (677), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 222/382 (58%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY NAK+ LF+++ + V+N DD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q V+TF ++ ++AD ++ + + TP G + ++G ++
Sbjct: 246 VRM--QKATAAHVITFGIK-QQADFKANNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+E ++ +E + V GR EL+ Q F VIVDYAHTPD L +L
Sbjct: 303 YNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTPDGLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+++ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +E+P I++DM+
Sbjct: 363 ETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPRAIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV ++ D Y +H+ RR A+R AV E GD++++AGKGHE
Sbjct: 423 QGVPYS----------DSY---------VVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 464 YQVIGDEVIDFDDRVEARIAIE 485
>sp|Q748D2|MURE_GEOSL UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Geobacter sulfurreducens (strain ATCC 51573 /
DSM 12127 / PCA) GN=murE PE=3 SV=1
Length = 509
Score = 261 bits (667), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 159/389 (40%), Positives = 222/389 (57%), Gaps = 19/389 (4%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ +L ++SY G + +P TTP++V +Q + ++ G +AVVME SSH L R
Sbjct: 129 GIPAAVLGTISYRF-GSKLVPAPHTTPESVELQATIRDLVDEGAKAVVMEVSSHALEQRR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPE----RHRKVVNIDDPNA 117
FD+AVFTNLTRDH+D+H E Y +KA+LF+ +V P+ R +N DD
Sbjct: 188 VDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTELVAPDGVKPRRAAAINRDDSYG 247
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNT---PHGILEISSGLLGR 174
+ PV+++ + A ++ E +F + T P G S LLGR
Sbjct: 248 ARLVETAV--APVISYGLAADAA----VRAENVVFSVDGIAGTLVTPFGTAPFHSHLLGR 301
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N+YNILAAVA G+ +G L+ I+ GIE VPGR E + E+ V+VDYAHT DAL
Sbjct: 302 FNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERVHNERGVTVLVDYAHTGDALE 361
Query: 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILD 294
+L +V ELA RIITV GC G+ DRGKRP+M +I+ S +TI+TSDNP E+P I+
Sbjct: 362 NVLKTVSELATGRIITVFGCGGDRDRGKRPVMAEISGRYSHLTIVTSDNPRTEEPAAIIK 421
Query: 295 DMLAG-VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353
++L G + ++EY N + + HD R+A AVA GD+V++AGK
Sbjct: 422 EVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAATVAVA----GDIVLLAGK 477
Query: 354 GHETYQIEGDKKEFFDDREESREALQYVD 382
GHE YQI G +K FDDREE+ A + D
Sbjct: 478 GHEDYQIIGTEKFHFDDREEAIAAFRSSD 506
>sp|Q65JY4|MURE_BACLD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=murE PE=3 SV=1
Length = 488
Score = 261 bits (666), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 224/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ IH D E+ TTP++V +Q KM+ G + VME SSH L +GR
Sbjct: 128 GSRTGLIGTMYTKIH-DETFEAKNTTPESVTLQKTFRKMVDQGVDTAVMEVSSHALHMGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+DIA FTNLT+DH+D+H T EEY++AK+ LFS++ H V+N DDP A
Sbjct: 187 VHGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFSQLGGSFNHETPKWAVLNADDP-A 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+++ AQ ++T+ ++N ADV +++ T + TP G +++ L+G N+
Sbjct: 246 SAYFAQVT-SAHLLTYGIQND-ADVMAENIKMAPKGTTFDLVTPKGSAQVTIPLVGLFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+L A A+ IA P I GIE + V GR EL+D Q F VIVDYAHTPD+L +L
Sbjct: 304 YNVLTAAAIAIAADIPFATITEGIEGLKGVRGRFELVDAGQDFPVIVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ R L ++ VVGC G+ D+ KRP M KIA D +D + T+DNP +E+PL IL+DM
Sbjct: 364 NTCRGLTEGKLFVVVGCGGDRDKTKRPKMAKIAVDLADEPVFTADNPRSENPLAILNDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV + YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 EGV-----------KGAYYHSIVN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G + FDD E ++ A+
Sbjct: 464 YQQIGGQTFDFDDAEVAKRAI 484
>sp|Q929X9|MURE_LISIN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=murE PE=3 SV=1
Length = 491
Score = 260 bits (665), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 145/382 (37%), Positives = 219/382 (57%), Gaps = 27/382 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD LE+ TTPD++ +Q ML +G VME SSH L GR
Sbjct: 127 GEQTGLIGTM-YRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
D+D+AVF NL++DH+D+H T EEY AK+ LF+++ + V+N DD +
Sbjct: 186 VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKIAVLNADDKES 245
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
Q ++TF ++ + AD +++ + + TP G + ++G ++
Sbjct: 246 VRM--QTATAAHIITFGIK-EPADFSASNIQITSHGSTFDLKTPVGDFALKIKMIGNFSV 302
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA+A A+ P+ + + +E + V GR EL++ Q F VIVDY+HTPD+L +L
Sbjct: 303 YNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAGQDFPVIVDYSHTPDSLLNVL 362
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ E A +R+ VVGC G+ D+GKRP M KIA D + I TSDNP +EDP I++DM+
Sbjct: 363 QTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSEDPHAIIEDMI 422
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV P +H+ RR A+R AV M E GD++++AGKGHE
Sbjct: 423 QGV-------------------PGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKGHED 463
Query: 358 YQIEGDKKEFFDDREESREALQ 379
YQ+ GD+ FDDR E+R A++
Sbjct: 464 YQVIGDEVIDFDDRVEARIAIE 485
>sp|A7Z4E1|MURE_BACA2 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacillus amyloliquefaciens (strain FZB42)
GN=murE PE=3 SV=1
Length = 490
Score = 259 bits (661), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 222/381 (58%), Gaps = 28/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ Y GD TTP++V +Q KM + +ME SSH L+LGR
Sbjct: 128 GRQTGLIGTM-YIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEVSSHALSLGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH----RKVVNIDDPNA 117
D+DIAVFTNLT+DH+D+H T E+YR AK+ LFS++ H R V+N DD +
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKAS 246
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
F + ++T+ +EN ADV + E+S T + TP G +I+ L+GR N+
Sbjct: 247 AYF--EKVTAAHILTYGIEND-ADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNV 303
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YN+LAA A GIA G P + I +EE+ V GR EL++ Q F V+VDYAHTPD+L +L
Sbjct: 304 YNVLAAAATGIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVVVDYAHTPDSLENVL 363
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++ +++ ++ VVGC G+ D+ KRP M +IA +D I TSDNP +EDPL IL DM
Sbjct: 364 NTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAILRDME 423
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
GV E YY + N R A+ A+A ++GD+V++AGKGHET
Sbjct: 424 RGV-----------EGTYYHSIAN---------REQAIFFAIANAKKGDVVLIAGKGHET 463
Query: 358 YQIEGDKKEFFDDREESREAL 378
YQ G++ FDD E + A+
Sbjct: 464 YQQIGNETFDFDDAEVAGRAI 484
>sp|Q01Q43|MURE_SOLUE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Solibacter usitatus (strain Ellin6076) GN=murE
PE=3 SV=1
Length = 494
Score = 258 bits (658), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 154/384 (40%), Positives = 213/384 (55%), Gaps = 40/384 (10%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
T M+ ++ Y++ G L++ TTP+++ + + + +L G V ME SSH LALGR
Sbjct: 134 TAMIGTIEYHLAG-RVLKAVNTTPESLDLLQIFSDLLRAGGTHVTMEVSSHALALGRVHG 192
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
++F AVFTNLTRDH+DFHG E Y AK LF V+N DD +
Sbjct: 193 LNFHTAVFTNLTRDHLDFHGDMERYFAAKQMLFEGAGGNPPRFAVLNTDDEYSRRLRLHA 252
Query: 125 NPDVPVVTFAMENKKADVHP---------LKFELSLFETQVLVNTPHGILEISSGLLGRH 175
+ + + M +AD+ P L+F+L + + + +P L+G+
Sbjct: 253 RTER--LWYGM-TPEADLRPRHIVSSFKGLRFDLQFRKQRFTIESP---------LIGKI 300
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
N+YNILAA A G + G E + RGI + AVPGR E +DE Q F V+VDYAHT DAL
Sbjct: 301 NVYNILAACATGFSYGLAPEVVARGIASLKAVPGRFERVDEGQPFVVVVDYAHTDDALRN 360
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
++ R L PRR+IT+ GC G+ DR KRPLM K A + SD +LTSDNP +EDPL I++D
Sbjct: 361 VIAVARGLNPRRVITLFGCGGDRDRAKRPLMGKAAAEASDFVVLTSDNPRSEDPLTIMND 420
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
L G+ T ++ E D R A+R A+ EGD+V++AGKGH
Sbjct: 421 ALVGIRRTDVAHVV--EPD----------------REAAIRRAIKEAREGDIVILAGKGH 462
Query: 356 ETYQIEGDKKEFFDDREESREALQ 379
ETYQ+ DK FDDR +RE L+
Sbjct: 463 ETYQVLKDKTIDFDDRAVAREVLK 486
>sp|Q8XJ99|MURE_CLOPE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Clostridium perfringens (strain 13 / Type A)
GN=murE PE=3 SV=1
Length = 484
Score = 257 bits (656), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/383 (38%), Positives = 219/383 (57%), Gaps = 34/383 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ +++ YI G+ K+++ RTTP++ + L M+ G E VME SSH L L R
Sbjct: 129 GFMTGLIGTIANYI-GNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDP---NAT 118
+ F+ +FTNLTRDH+DFH T E Y NAK KLF R + ++N+DDP N
Sbjct: 188 VYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER-----SNHSIINLDDPYGANIV 242
Query: 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
I + V TF++E K++D + + ++ VN GI E S + G +NIY
Sbjct: 243 KDIEERGVKTKVSTFSIE-KESDFKAFEIKSHSNGSEFKVNL-EGIEEFSINIPGEYNIY 300
Query: 179 NILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTPDALSRL 236
N L + + P++ I G+ +V +PGRCEL+ +E+ + +I+DYAHTPD L +
Sbjct: 301 NSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENI 359
Query: 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296
L +V+ R+I+V GC G+ D+ KRP M KI + SD+ I+TSDNP +E+P+DI++D+
Sbjct: 360 LSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDI 419
Query: 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
+ PL N + R+ A+R A+ M EGD++V+AGKGHE
Sbjct: 420 V-------------------KPL-NYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHE 459
Query: 357 TYQIEGDKKEFFDDREESREALQ 379
TYQI D+ FD+RE + L+
Sbjct: 460 TYQILKDETIHFDEREVVYDILE 482
>sp|A5I1T6|MURE_CLOBH UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Clostridium botulinum (strain Hall / ATCC 3502
/ NCTC 13319 / Type A) GN=murE PE=3 SV=1
Length = 483
Score = 248 bits (634), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 150/392 (38%), Positives = 219/392 (55%), Gaps = 55/392 (14%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+L +++ YI G+ K+ES RTTP+++ +Q L M+ + VME SSH L L R
Sbjct: 131 GYKVGLLGTIANYI-GNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V+F A+FTNLT+DH+DFH T E Y N+K LF V+NIDD +
Sbjct: 190 VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA-----QNSVINIDDSYGEKVL 244
Query: 122 --AQGNPDVPVVTFAMENK---KAD---VHPLKFEL-SLFETQ---VLVNTPHGILEISS 169
A GN +T+ +E KA+ +H E ++F+ + + +N P
Sbjct: 245 KKALGNK----ITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP-------- 292
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYA 227
G++NIYN L ++ + G PL+ I +E++ +VPGRCE++ + G VIVDYA
Sbjct: 293 ---GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYA 349
Query: 228 HTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNE 287
HTPD L +L++ RE R+I+V GC G+ DR KRP+M K+ ++ SD+ I+TSDNP E
Sbjct: 350 HTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTE 409
Query: 288 DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347
DP I+ D+L G+ E D Y + RR A+R A+ + +E D+
Sbjct: 410 DPKLIIKDVLEGI-----------ERDNYIVVEG---------RRDAIRKAMEIAKENDV 449
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+VVAGKGHE YQI DK FD+RE E ++
Sbjct: 450 IVVAGKGHEDYQILKDKTIHFDEREVIEELIK 481
>sp|A7FTY1|MURE_CLOB1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Clostridium botulinum (strain ATCC 19397 /
Type A) GN=murE PE=3 SV=1
Length = 483
Score = 248 bits (634), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 150/392 (38%), Positives = 219/392 (55%), Gaps = 55/392 (14%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G+L +++ YI G+ K+ES RTTP+++ +Q L M+ + VME SSH L L R
Sbjct: 131 GYKVGLLGTIANYI-GNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR 189
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V+F A+FTNLT+DH+DFH T E Y N+K LF V+NIDD +
Sbjct: 190 VYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA-----QNSVINIDDSYGEKVL 244
Query: 122 --AQGNPDVPVVTFAMENK---KAD---VHPLKFEL-SLFETQ---VLVNTPHGILEISS 169
A GN +T+ +E KA+ +H E ++F+ + + +N P
Sbjct: 245 KKALGNK----ITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP-------- 292
Query: 170 GLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYA 227
G++NIYN L ++ + G PL+ I +E++ +VPGRCE++ + G VIVDYA
Sbjct: 293 ---GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYA 349
Query: 228 HTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNE 287
HTPD L +L++ RE R+I+V GC G+ DR KRP+M K+ ++ SD+ I+TSDNP E
Sbjct: 350 HTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTE 409
Query: 288 DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347
DP I+ D+L G+ E D Y + RR A+R A+ + +E D+
Sbjct: 410 DPKLIIKDVLEGI-----------ERDNYIVVEG---------RRDAIRKAMEIAKENDV 449
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+VVAGKGHE YQI DK FD+RE E ++
Sbjct: 450 IVVAGKGHEDYQILKDKTIHFDEREVIEELIK 481
>sp|Q0AYR3|MURE_SYNWW UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Syntrophomonas wolfei subsp. wolfei (strain
Goettingen) GN=murE PE=3 SV=1
Length = 489
Score = 247 bits (631), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 140/378 (37%), Positives = 217/378 (57%), Gaps = 21/378 (5%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +T ++ ++ Y G+ + E TTP+A+ +++ MA + +VME SSH L L R
Sbjct: 129 GKKTAIMGTL-YAQVGEIQREMQHTTPEALEIESFMALCREEKADYIVMEVSSHALQLQR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+E+DF++AVFTNLT+DH+DFH + YR AK +LF + + +++ ++NIDDP A
Sbjct: 188 VAEIDFNVAVFTNLTQDHLDFHQNMDNYRAAKLQLFQMIKEEKQNYAIINIDDPWAEEIF 247
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+P ++ ++ K++D + ++ L + ++ L I+ L+G +IYN L
Sbjct: 248 QAAT--IPCRSYGIK-KRSDYQAGELKIDLDGSSFRLHYGDNSLMINMKLIGLFSIYNAL 304
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA++ + G I + V+ VPGR E +D Q F VIVDYAHTPD L +L + R
Sbjct: 305 AAISFALQEGIDPGLIQSALARVEGVPGRFEKVDCGQDFAVIVDYAHTPDGLENILQTSR 364
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
EL +R+I V GC G+ DR KRPLM +IA SD ++TSDNP +EDP I+ +++ G+
Sbjct: 365 ELGKKRLICVFGCGGDRDRSKRPLMGEIAAKYSDFCVVTSDNPRSEDPHAIIAEIIPGMD 424
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
E Y + + RR A+R A+ + GD+VV+AGKGHE YQ+
Sbjct: 425 KV--------EKSRYAIIVD---------RREAIRHAIHLARTGDLVVIAGKGHENYQLV 467
Query: 362 GDKKEFFDDREESREALQ 379
D+ FDDR+ + E L+
Sbjct: 468 KDQVLEFDDRKVAAELLR 485
>sp|Q9K9S4|MURE_BACHD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=murE PE=3 SV=1
Length = 486
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 154/392 (39%), Positives = 226/392 (57%), Gaps = 51/392 (13%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G TG++ ++ Y G E+ TTP+++++Q A M +G +ME SSH L GR
Sbjct: 128 GKMTGLIGTM-YTKIGHELKETKNTTPESLVLQRTFADMKKSGVTTAMMEVSSHALQSGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHR-KVVNIDDPNATSF 120
DFD+AVF+NLT DH+D+HGT E Y+ AK LF+++ + + + V+N DDP + F
Sbjct: 187 VRGCDFDVAVFSNLTPDHLDYHGTMERYKFAKGLLFAQLGNTYQGKVAVLNADDPASADF 246
Query: 121 ----IAQGNPDVPVVTFAMENKKADVHP---------LKFELSLFETQVLVNTPHGILEI 167
IAQ VVT+ +EN+ AD FEL+ FE + +E+
Sbjct: 247 AEMTIAQ------VVTYGIENE-ADFQAENVRITSTGTTFELAAFEER---------MEL 290
Query: 168 SSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYA 227
S L+G+ ++YN+LAA A G PL++I + +EEV V GR E + +Q F VIVDYA
Sbjct: 291 SIHLIGKFSVYNVLAAAAAAYVSGVPLQEIKKSLEEVKGVAGRFETVKHDQPFTVIVDYA 350
Query: 228 HTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNE 287
HTPD+L +L +V ELA + VVGC G+ D+ KRP+M +IAT ++ I TSDNP +E
Sbjct: 351 HTPDSLENVLKTVGELAKGDVRVVVGCGGDRDKTKRPVMAEIATTFANQAIFTSDNPRSE 410
Query: 288 DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347
+P+DIL DM G + D Y L + D R+ A+ A+ + +E D+
Sbjct: 411 EPMDILRDMEQG-----------AKGDSY--------LMIED-RKEAIFKAIELAKEDDI 450
Query: 348 VVVAGKGHETYQIEGDKKEFFDDREESREALQ 379
+V+AGKGHETYQ D+ FDDR +++A++
Sbjct: 451 IVIAGKGHETYQQFRDRTIDFDDRIVAQQAIK 482
>sp|Q8R635|MURE_FUSNN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=murE PE=3 SV=1
Length = 485
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/373 (38%), Positives = 213/373 (57%), Gaps = 30/373 (8%)
Query: 8 LSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDF 67
+ ++ Y I GD E+ TTP+++ + + K L E V+ME SSH L +GR +DF
Sbjct: 131 IGTIEYKI-GDKVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLEIGRVEVLDF 189
Query: 68 DIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPD 127
D A+FTNLT+DH+D+H T E Y AK KLF ++ D + V+N+DD + D
Sbjct: 190 DYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDI--NNSVINVDDEYGKRLYDEFIVD 247
Query: 128 VP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAV 186
P ++++ +EN L+ + S + + V + I ++ LLG N+YN L A+ +
Sbjct: 248 NPEIISYGIEN-----GDLEGDYSD-DGYIDVKYKNQIEKVKFSLLGDFNLYNTLGAIGI 301
Query: 187 GIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP- 245
+ +G +E+I++ + + A PGR E +D Q + VIVDYAHTPDAL ++ + R +
Sbjct: 302 ALKIGISMEEILKRVSNIKAAPGRFEALDCGQDYKVIVDYAHTPDALVNVIVAARNIKNG 361
Query: 246 RRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305
RIIT+ GC G+ DR KRP+M K+A D SDV ILTSDNP E P I DD+ G
Sbjct: 362 SRIITIFGCGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKKG------ 415
Query: 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365
++K +DY F R A++ A+ M E+ D++++ GKGHETY I G KK
Sbjct: 416 -FIK--SDDY----------FFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGTKK 462
Query: 366 EFFDDREESREAL 378
FDD+E +R +
Sbjct: 463 WHFDDKEIARREI 475
>sp|Q88Y23|MURE_LACPL UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Lactobacillus plantarum (strain ATCC BAA-793 /
NCIMB 8826 / WCFS1) GN=murE PE=3 SV=2
Length = 493
Score = 246 bits (627), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 210/387 (54%), Gaps = 45/387 (11%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ I D KL + TTPDA+ Q +A M G E V ME SS L LGR
Sbjct: 132 TGLIGTMYRKIK-DEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWG 190
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM-----VDPERHRKVVNIDDPNATS 119
+D+DIAVFTNLT+DH+DFH T +Y AKA LF+++ D V+N DDP
Sbjct: 191 IDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGRE 250
Query: 120 FIAQGNPDVPVVTFAM--------ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGL 171
F + V+TF + +N + H +F+LS+F + ++ L
Sbjct: 251 F--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFG---------HVTHVTMQL 299
Query: 172 LGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPD 231
+G+ N+YN+LAA A A G P + I++ +E+V V GR + + VIVDY+HTPD
Sbjct: 300 IGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPD 359
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
L L+++++ A + I VVGC G+ D+ KRP M KIA + S I TSDNP EDP
Sbjct: 360 GLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTM 419
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
IL+DM+AGV PN D R VA+ A+ + GD+V++A
Sbjct: 420 ILNDMVAGV-------------------PNADVPVYED-RHVAIAKAIEAAQPGDVVLIA 459
Query: 352 GKGHETYQIEGDKKEFFDDREESREAL 378
GKGHE YQI G K FDD EE+ +AL
Sbjct: 460 GKGHEDYQIIGRTKHHFDDSEEAAKAL 486
>sp|A8MH31|MURE_ALKOO UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Alkaliphilus oremlandii (strain OhILAs)
GN=murE PE=3 SV=1
Length = 487
Score = 245 bits (626), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 219/376 (58%), Gaps = 27/376 (7%)
Query: 3 LRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRC 62
+ G++ ++S +I G+ ++E+ RTTP+++ +Q ++ +M+ + VME SSH L LGR
Sbjct: 129 INVGLIGTISNWI-GNKEIEAVRTTPESLELQKILNEMVEQKVDTCVMEVSSHALELGRV 187
Query: 63 SEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122
F + +FTNLT +H+DFH + YRNAK KLF + ++N+DD + IA
Sbjct: 188 DHTKFTMGIFTNLTPEHLDFHEDMDHYRNAKKKLFYKTTLC----NIINVDDIHG-KMIA 242
Query: 123 Q--GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ +P++TF M N++ADV+ +++L ++ E + G +YN
Sbjct: 243 EELKEEQIPLITFGM-NQQADVYATDLKINLKGVSFQLHMGQDSKEFHVKIPGLFTVYNA 301
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
+ ++ + +G LE+I +E + VPGR E+++E Q VI+DYAHTPDAL +L S
Sbjct: 302 MPSILICYILGLSLEEISIALEAMKGVPGRFEVVEEIQRNSVIIDYAHTPDALENILIST 361
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
R+ AP+RIITV GC G+ D+ KR +M +I+ SD +I+TSDNP E+PL I++ + G+
Sbjct: 362 RKFAPKRIITVFGCGGDRDKTKRRIMGEISGKYSDYSIITSDNPRTEEPLKIIEMIEDGI 421
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
+Y ++ + RR A+ A+ + EE D++++AGKGHE Q+
Sbjct: 422 KQVTDQY----------------KIMID--RRCAIEYAMKIAEEKDIIILAGKGHEKTQV 463
Query: 361 EGDKKEFFDDREESRE 376
G++ +FDDRE + E
Sbjct: 464 IGNEVFYFDDREVALE 479
>sp|Q7NFN2|MURE_GLOVI UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Gloeobacter violaceus (strain PCC 7421)
GN=murE PE=3 SV=1
Length = 489
Score = 245 bits (626), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 211/377 (55%), Gaps = 31/377 (8%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
TG++ ++ G ++ E+ TTP A+ +Q L+A+M+ G + VME SSH LA R +
Sbjct: 134 TGLVGTLYSRWPGQSQ-EARHTTPFALEIQKLLAQMVEAGCQYGVMEVSSHALAQQRVAG 192
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERH--RKVVNIDDPNATSFIA 122
F+ AVFTNLT+DH+DFH E Y AKA LFS PE R V+N DDP A
Sbjct: 193 CRFEAAVFTNLTQDHLDFHPDMESYFQAKATLFS----PEYRSGRAVINADDPWGVRLAA 248
Query: 123 QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILA 182
+ V T++ + AD++P + + + TP G +S L+G+ N+ N+LA
Sbjct: 249 AYDQ---VWTYSFQ-PGADIYPEDAVFTPEGIRGTLVTPVGRAAFTSPLVGQFNLANLLA 304
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELID-EEQAFGVIVDYAHTPDALSRLLDSVR 241
AV +A+G LE I G+ VPGR E + + VIVDYAHTPD L +LL++ R
Sbjct: 305 AVGATLALGIDLEAIAAGLSGFGGVPGRMERVSGSDDDIAVIVDYAHTPDGLRKLLEATR 364
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
R+I V GC G+ DR KRP M +IA + SD+ ++TSDNP E+P ILDD+LAG+
Sbjct: 365 PFVRGRLICVFGCGGDRDRTKRPQMGRIAAELSDLPVVTSDNPRTENPEAILDDILAGI- 423
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
P G + RR A+ A+ + GD VV+AGKGHE YQI
Sbjct: 424 ------------------PVGVSPTVEVDRRRAILQALLEAKAGDCVVIAGKGHEDYQIL 465
Query: 362 GDKKEFFDDREESREAL 378
G K FDDRE++REAL
Sbjct: 466 GTTKIHFDDREQAREAL 482
>sp|Q8DJI4|MURE_THEEB UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Thermosynechococcus elongatus (strain BP-1)
GN=murE PE=3 SV=1
Length = 497
Score = 245 bits (626), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 152/381 (39%), Positives = 209/381 (54%), Gaps = 26/381 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G T +L ++ G ++ S TTP AV +Q +A + G VME SSH LA
Sbjct: 131 VGYPTALLGTLYSRWPGHCEVAS-HTTPFAVTLQEQLAAAVDAGCRFGVMEVSSHALAQD 189
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R F++A FTNLT+DH+D+H E+Y AKAKLF+ D + R ++N DDP
Sbjct: 190 RVWGCQFEVAAFTNLTQDHLDYHRDLEDYFAAKAKLFT--ADYLKGRAILNGDDPFGQR- 246
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+AQ P T+ + +K AD V+TP G + S L+G+ N+ N+
Sbjct: 247 LAQQLPRDRYWTYGL-SKDADFRAENLNYRSNGVTGAVHTPLGSGTLDSPLVGQFNVANV 305
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI--DEEQAFGVIVDYAHTPDALSRLLD 238
LAA+A+G AVG PLE ++ + + VPGR E + D EQ V+VDYAHTPD+L LL
Sbjct: 306 LAAIAMGAAVGLPLEAMLNALRDFPGVPGRMEQVRLDPEQDITVVVDYAHTPDSLENLLR 365
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ R P ++I V GC G+ DR KRP M IA +D ++TSDNP E+P ILDD+LA
Sbjct: 366 AARPFIPGKLICVFGCGGDRDRSKRPQMGAIAARLADQVVVTSDNPRTENPQRILDDILA 425
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ P + + RR A+ A+ GD V++AGKGHE Y
Sbjct: 426 GI-------------------PPETAMIVEGDRRQAILQAILTAAPGDGVIIAGKGHEDY 466
Query: 359 QIEGDKKEFFDDREESREALQ 379
QI G +K FDDREE+R AL+
Sbjct: 467 QILGTEKVHFDDREEARNALK 487
>sp|Q3ME15|MURE_ANAVT UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=murE PE=3 SV=1
Length = 496
Score = 244 bits (623), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 206/361 (57%), Gaps = 24/361 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A+ ++ G E VME SSH LA GR F++ VF+NLT+DH+D+H
Sbjct: 158 TTPFAVELQQQLAQAVNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSD 217
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E+Y AKA LFS D + R ++N DD I +P+ V ++++ + AD+
Sbjct: 218 MEDYFAAKALLFSP--DYLKGRAIINADDTYGQRLIKALSPE-KVWSYSVNDSSADLWMS 274
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
++TP G + S L+G++N+ N+LA+V + +G L+ I I E
Sbjct: 275 DLSYEPNGVTGTIHTPEGDVSFRSPLVGQYNLENLLASVGAVLHLGLDLQLIANAIPEFP 334
Query: 206 AVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I+ +Q VIVDYAHTPD+L LL + R P R+I V GC G+ DR KR
Sbjct: 335 GVPGRMERVQINPDQDISVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKR 394
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
P M KIA + +D+ +TSDNP EDP ILDD+LAG+ T+Q + G+
Sbjct: 395 PKMGKIAAELADLAFVTSDNPRTEDPEKILDDILAGIPDTVQPTV-IGD----------- 442
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDE 383
R +A+R A+ + GD V++AGKGHE YQI G +K FDDRE +R AL ++
Sbjct: 443 -------RAIAIRTAILQAQPGDGVLLAGKGHEDYQILGTEKIHFDDREHARAALTEREK 495
Query: 384 L 384
L
Sbjct: 496 L 496
>sp|Q97H84|MURE1_CLOAB UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase 1 OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=murE1
PE=3 SV=1
Length = 482
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 214/388 (55%), Gaps = 47/388 (12%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ +++ YI GD K+ES RTTP+++ +Q L + M+H+ + VME SSH L L R
Sbjct: 129 GYKVGLIGTIANYI-GDKKIESHRTTPESLELQKLFSDMVHDKIDYCVMEVSSHSLYLDR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS-F 120
+ F+ +FTNLT+DH+DFH T E Y AK LF R ++NIDD F
Sbjct: 188 VYGIVFEEGIFTNLTQDHLDFHKTFENYYKAKMILF-----KNSKRSIINIDDKYGERVF 242
Query: 121 IAQGNPDVPV-----VTFAMENKKADVHPLKFELSL--FETQVLVNTPHGILEISSGLLG 173
GN + EN K +F+L V +N P G
Sbjct: 243 KDAGNDKITYGLTEKADLKAENLKMTSRGTEFDLCYRGLREHVKINIP-----------G 291
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQA--FGVIVDYAHTPD 231
++N+YN L +VA + G +E + G+ ++ +VPGRCE++ F V++DYAHTPD
Sbjct: 292 KYNVYNALGSVAACLNEGISIEKVKDGLNKLSSVPGRCEIVTHNTNLDFDVVLDYAHTPD 351
Query: 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLD 291
L ++L + RE R+I+V GC G+ D+ KRP+M +I + SD+ ++TSDNP +E+P +
Sbjct: 352 GLEKVLKASREFTKGRLISVFGCGGDRDKTKRPIMGEIGSKLSDIAVITSDNPRSENPEE 411
Query: 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
I+ D++ G+ + D Y + N R+ A++ A+ M ++ D++V+A
Sbjct: 412 IIKDIVQGI-----------KTDNYVIVEN---------RKEAIKKAMLMAKKDDVIVLA 451
Query: 352 GKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHE YQI GDK FD++E E ++
Sbjct: 452 GKGHENYQILGDKTIHFDEKEIVSEFIK 479
>sp|Q8YWF0|MURE_NOSS1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=murE PE=3 SV=1
Length = 496
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/363 (40%), Positives = 206/363 (56%), Gaps = 28/363 (7%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP AV +Q +A+ ++ G E VME SSH LA GR F++ VF+NLT+DH+D+H
Sbjct: 158 TTPFAVELQQQLAQAVNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSD 217
Query: 86 EEEYRNAKAKLFSRMVDPE--RHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVH 143
E+Y AKA LFS PE + R ++N DD I +P+ V ++++ + AD+
Sbjct: 218 MEDYFAAKALLFS----PEYLKGRAIINADDTYGQRLIKALSPE-KVWSYSVNDSSADLW 272
Query: 144 PLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEE 203
++TP G + S L+G++N+ N+LAAV + +G L+ I I E
Sbjct: 273 MSDLSYEPNGVTGTIHTPEGNVSFRSPLVGQYNLENLLAAVGAVLHLGLNLQLIANAIPE 332
Query: 204 VDAVPGRCE--LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRG 261
VPGR E I+ +Q VIVDYAHTPD+L LL + R P R+I V GC G+ DR
Sbjct: 333 FPGVPGRMERVQINPDQDISVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRT 392
Query: 262 KRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPN 321
KRP M KI + +D+ +TSDNP EDP ILDD+LAG+ T+Q + G+
Sbjct: 393 KRPKMGKIVAELADLAFVTSDNPRTEDPDRILDDILAGIPDTVQPTV-IGD--------- 442
Query: 322 GHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYV 381
R +A+R A+ + GD V++AGKGHE YQI G +K FDDRE +R AL
Sbjct: 443 ---------RAIAIRTAILQAQPGDGVLLAGKGHEDYQILGTEKIHFDDREHARAALTER 493
Query: 382 DEL 384
++L
Sbjct: 494 EKL 496
>sp|Q894B7|MURE_CLOTE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Clostridium tetani (strain Massachusetts /
E88) GN=murE PE=3 SV=1
Length = 485
Score = 240 bits (612), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/381 (36%), Positives = 212/381 (55%), Gaps = 33/381 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G + G++ ++ YI GD K+ + RTTP+++ + L M+ +G + VME SSH L L R
Sbjct: 132 GFKVGLMGTILNYI-GDRKIYAQRTTPESLEIHKLFKDMVDSGVDYCVMEVSSHSLYLDR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
++F+ +FTNLT+DH+DFH T E Y N+K LF ++ V+NIDD +
Sbjct: 191 VYGIEFNEGIFTNLTQDHLDFHKTFENYYNSKLMLFKNSINS-----VINIDDNYGERIL 245
Query: 122 AQGNPDVPVVTFAMENKK-ADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ + TF KK +D+ L + V+ +I+ + G +N+ N
Sbjct: 246 KE----IEEKTFTYSIKKYSDLKAESVRLHSRGGEFTVDFKGNKEKINIHIPGEYNVSNA 301
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG--VIVDYAHTPDALSRLLD 238
L ++ + G L+ I RG+E++ VPGRCE++ G VIVDYAHTPD L +L
Sbjct: 302 LGSILACVNEGISLKVIKRGLEKLSGVPGRCEIVTMGYNLGYDVIVDYAHTPDGLDNVLR 361
Query: 239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+ R+ ++I+V GC G+ DR KRP+M +I T+ SD+ ILTSDNP E+P I+DD++
Sbjct: 362 TARDFTKGKLISVYGCGGDRDRAKRPIMGRIGTELSDLAILTSDNPRTEEPFSIIDDIVK 421
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
GV T Y+ + RR A++ A+ + ++ D++VVAGKGHE Y
Sbjct: 422 GV--TKDNYI------------------IVQSRREAIKKAMTIAKKDDVIVVAGKGHEDY 461
Query: 359 QIEGDKKEFFDDREESREALQ 379
QI DK FD+RE +E ++
Sbjct: 462 QILKDKTIHFDEREVIKEIIE 482
>sp|Q39YM4|MURE_GEOMG UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Geobacter metallireducens (strain GS-15 / ATCC
53774 / DSM 7210) GN=murE PE=3 SV=1
Length = 511
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 155/391 (39%), Positives = 221/391 (56%), Gaps = 13/391 (3%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+ +L ++SY GD + +P TTP++V +Q + ++ G + VVME SSH L R
Sbjct: 129 GIPVAVLGTISYRF-GDKTIPAPHTTPESVDLQRTIRDLVDRGAQGVVMEVSSHALEQRR 187
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPE----RHRKVVNIDDPNA 117
FD+ VFTNLTRDH+D+H E Y +KA+LF+ ++ + R V+N+DDP
Sbjct: 188 VDGCRFDVGVFTNLTRDHLDYHRDMESYFESKARLFTELLAADDTKPRRAAVINVDDPYG 247
Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
+ + PVV++ + + V S+ + TP G + S LLGR N+
Sbjct: 248 ARLAS--DAVAPVVSYGL-SPSVMVRAEMVTFSVDGISGTLVTPLGTIPFHSRLLGRFNL 304
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
YNILAAVA G+A+G + I GIE VPGR E +D + V+VDYAHT DAL +L
Sbjct: 305 YNILAAVAAGVALGLSPDAIRGGIEGDVRVPGRLERVDNDHGITVLVDYAHTGDALENVL 364
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+V E+A RIITV GC G+ DRGKRP+M +IA SD++I+TSDNP ED I+ ++L
Sbjct: 365 KTVAEIATGRIITVFGCGGDRDRGKRPVMGEIAGRFSDLSIVTSDNPRTEDAGAIIGEIL 424
Query: 298 AGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE 356
G+ ++E YG + + + RR A+R A + GD++++AGKGHE
Sbjct: 425 GGIRSLGLRE---YGAEELITGF-DAKGFAAVESRREAIRLAARVARPGDVLLLAGKGHE 480
Query: 357 TYQIEGDKKEFFDDREESREALQYVDELHQA 387
YQI G K FDDREE A + + Q
Sbjct: 481 DYQIIGTMKHHFDDREEVAAAFRELSSKGQG 511
>sp|Q55469|MURE_SYNY3 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=murE PE=3 SV=1
Length = 505
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 196/355 (55%), Gaps = 24/355 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +A+ L G + VME SSH LA GR + F AVFTNLT+DH+DFHGT
Sbjct: 168 TTPFATDLQKQLAEALQAGNQYAVMEVSSHALAQGRVLQCGFACAVFTNLTQDHLDFHGT 227
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E Y AKA LF + R V+N DDP I + P V T+++ + AD +
Sbjct: 228 MENYFAAKALLFKESY--LQGRAVINQDDPYGQRLIDR-LPLDQVYTYSVNDSTADFYTK 284
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ + TP G S L+G+ N+ N+LAA+A G+ +G +V+ + +
Sbjct: 285 DLDYQPTGVKGTFVTPQGEFPFLSPLVGQFNLANVLAAIASGLHLGLDPAAMVKDLLDFP 344
Query: 206 AVPGRCEL--IDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKR 263
VPGR E I +Q V+VDYAHTPD+L L + R P R+I + GC G+ DR KR
Sbjct: 345 GVPGRMEQVQIRPDQDISVMVDYAHTPDSLENALKAARPFIPGRLICIFGCGGDRDRTKR 404
Query: 264 PLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGH 323
PLM IA +D+ ++TSDNP EDP IL D++ G+ ++ ++ G+
Sbjct: 405 PLMGNIAAQLADLAVVTSDNPRTEDPEQILADVVQGISLDIEPWI-IGD----------- 452
Query: 324 RLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
R A+ A+ + GD V++AGKGHE YQI G +K FDDRE++REAL
Sbjct: 453 -------RATAIHKAIREAKPGDGVLIAGKGHEDYQILGTEKIHFDDREQAREAL 500
>sp|Q31N55|MURE_SYNE7 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Synechococcus elongatus (strain PCC 7942)
GN=murE PE=3 SV=1
Length = 497
Score = 234 bits (598), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 139/354 (39%), Positives = 193/354 (54%), Gaps = 24/354 (6%)
Query: 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT 85
TTP A +Q +A + G +A VME SSH L GR + FD+AVFTNLT+DH+D+HGT
Sbjct: 161 TTPFATDLQAQLATAVDAGCQAAVMEVSSHALDQGRVNGCGFDVAVFTNLTQDHLDYHGT 220
Query: 86 EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPL 145
E Y AKA+LF+ R + V+N DD I P +T+++ AD
Sbjct: 221 MEAYFAAKARLFAPPY--LRGKAVINADDAYGQRLITM-TPPGQCLTYSVVGT-ADFCTT 276
Query: 146 KFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVD 205
+ + + TP G S L+G+ N+ N+L A+A G +G P+E ++ + +
Sbjct: 277 DLQYGPTGVEGTIKTPDGAFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFV 336
Query: 206 AVPGRCE-LIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRP 264
VPGR E ++ ++ VIVDYAHTPD+L LL + R +I V GC G+ DR KRP
Sbjct: 337 GVPGRMERVVGQDSDPTVIVDYAHTPDSLENLLKAARPFIQGELICVFGCGGDRDRTKRP 396
Query: 265 LMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHR 324
LM +IA +D I+TSDNP EDP IL D++AG+ P
Sbjct: 397 LMGEIAARLADRVIITSDNPRTEDPRQILADIVAGI-------------------PAASP 437
Query: 325 LFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378
+ + R A+R A+ + GD V++AGKGHE YQI G K FDDRE++R AL
Sbjct: 438 VVVEADRAAAIRQAILSAQPGDGVLLAGKGHEDYQILGTTKIHFDDREQARLAL 491
>sp|Q83F28|MURE_COXBU UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Coxiella burnetii (strain RSA 493 / Nine Mile
phase I) GN=murE PE=3 SV=1
Length = 489
Score = 234 bits (598), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 142/386 (36%), Positives = 202/386 (52%), Gaps = 37/386 (9%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+R G++ ++ Y G ++ TTP+ + +Q A+M G +A+ ME SSH L R
Sbjct: 132 GIRCGVIGTLGYGFLGSLH-KTSHTTPEPIQLQQAFAEMRKQGAKAIAMEVSSHALHQRR 190
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
V FDIAVFT L+RDH+D+HG E Y AK LF + P H VVN DD I
Sbjct: 191 VEGVQFDIAVFTQLSRDHLDYHGDMENYARAKELLFQQ---PGLHTGVVNCDDALGKRII 247
Query: 122 AQGNPDVPVVTFAMENKKAD---------VHPLKFELSLFETQVLVNTPHGILEISSGLL 172
A + +V ++ K D + PL S V V TP G ++ L
Sbjct: 248 AHYRHQLTLVGYSANGVKDDRVSSVIASAIQPLAQGFS-----VEVQTPWGEGTFTTPLF 302
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
GR NI N+LA ++V P + + + ++ VPGR +++D ++ +IVDYAHTPDA
Sbjct: 303 GRFNISNLLAVLSVLCLCEIPFDKALLELSQLRNVPGRMQVVDSQRQPQIIVDYAHTPDA 362
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L + L ++RE R+I V GC G+ DRGKRP M +A +D ILT+DNP E PL I
Sbjct: 363 LEKALTALREHCQGRLICVFGCGGDRDRGKRPQMAAVAEQHADQIILTNDNPRTESPLTI 422
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ D+ AG N + + + R A+R AV M D+V++AG
Sbjct: 423 IQDIQAG-------------------FKNKNAVLVKLDRAEAIRYAVQMAAVNDIVLIAG 463
Query: 353 KGHETYQIEGDKKEFFDDREESREAL 378
KGHET Q D+ F+D EE+++AL
Sbjct: 464 KGHETTQTIADQVLPFNDVEEAKKAL 489
>sp|A6TS66|MURE_ALKMQ UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Alkaliphilus metalliredigens (strain QYMF)
GN=murE PE=3 SV=1
Length = 494
Score = 234 bits (597), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 137/374 (36%), Positives = 210/374 (56%), Gaps = 25/374 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ +++ +I G+ ++E+ RTTP+++ +Q + +M VME SSH LAL R +
Sbjct: 131 KVGLIGTIANWI-GNTEVEAQRTTPESIDLQQIFKEMADEKVTECVMEVSSHALALERVA 189
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E +F + VFTNLT +H+DFH + YR AK KLF V+NIDDP+ +
Sbjct: 190 ESEFKVGVFTNLTPEHLDFHENIDNYREAKKKLFYLTTVA----NVINIDDPHGAMIAEE 245
Query: 124 GNPDVP-VVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILA 182
P ++TF ++ K+A V +L + + TP G ++ + G + YN LA
Sbjct: 246 VKKLKPSLITFGIK-KQATVMAKNIATTLKDVTFDLVTPVGEARVTVKIPGIFSAYNALA 304
Query: 183 AVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRE 242
++A IA+G P + IV+GI+ + VPGR E + + F VIVDYAHTPDA+ ++ + +
Sbjct: 305 SIATSIAIGVPFDVIVQGIQSIPGVPGRFESVLGIKDFSVIVDYAHTPDAIENVIQAAKN 364
Query: 243 LAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGW 302
+ R+ITV GC G+ DR KR +M +I+ SD++++TSDNP EDP IL + AG+
Sbjct: 365 VTEHRVITVFGCGGDRDRTKRSVMGEISGSLSDLSVITSDNPRTEDPYKILMMIEAGIKK 424
Query: 303 TMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEG 362
T G + D RR A+R A+ ++GD+V++AGKGHE Q G
Sbjct: 425 T-----------------KGLYTIIED-RREAIRYAMKEAKKGDIVLIAGKGHEATQQIG 466
Query: 363 DKKEFFDDREESRE 376
FDD +RE
Sbjct: 467 SNVIIFDDCGVARE 480
>sp|Q7NPZ4|MURE_CHRVO UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Chromobacterium violaceum (strain ATCC 12472 /
DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC
9757) GN=murE PE=3 SV=1
Length = 493
Score = 233 bits (593), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 202/375 (53%), Gaps = 30/375 (8%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
+G + ++ +V +G + E+ TTPD V VQ +A+ G V ME SSHGL
Sbjct: 132 LGQKAALIGTVGNGFYG-HLTETTHTTPDPVTVQQKLAEYRRQGAHVVTMEVSSHGLDQF 190
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R + V+F AVFTNLTRDH+D+HG+ E Y +K KLF + +H V+N DD
Sbjct: 191 RVNGVEFATAVFTNLTRDHLDYHGSMEAYGESKKKLF--FWEGLKH-AVINADDAFGRQL 247
Query: 121 IAQGNP-DVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
A +P VVT+ +E + DV PL +L Q+ V TP G +++ +GL+GR N N
Sbjct: 248 AAGIDPKQTRVVTYGLE--QGDVRPLALAATLEGLQLTVATPWGTVDVRTGLVGRFNAAN 305
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LA +A G L+D + + GR + + V++DYAHTPDAL + L +
Sbjct: 306 LLACLATLCVNGVSLQDAAAVMARIQPARGRMQSVGGAHEPLVVIDYAHTPDALEKALAT 365
Query: 240 VRELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
+ E+ P R+ V GC G+ D GKRP+M IA +DV +LTSDNP +EDP I+ D+L
Sbjct: 366 LSEIRPAGGRLFCVFGCGGDRDPGKRPMMGAIAEKHADVAVLTSDNPRSEDPQAIIRDVL 425
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
AG+ + R + R A+ AVA GD+V+VAGKGHE
Sbjct: 426 AGM--------------------DAARAHVEADREAAIHWAVAQARVGDVVLVAGKGHEE 465
Query: 358 YQ-IEGDKKEFFDDR 371
YQ I G K+ F D R
Sbjct: 466 YQDIAGVKRPFSDFR 480
>sp|Q8CZE6|MURE1_OCEIH UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Oceanobacillus iheyensis (strain DSM 14371 /
JCM 11309 / KCTC 3954 / HTE831) GN=murE1 PE=3 SV=1
Length = 493
Score = 229 bits (584), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 136/379 (35%), Positives = 217/379 (57%), Gaps = 24/379 (6%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I G+ TTP+A+ +Q M + +ME SSH L +GR
Sbjct: 132 KAGVIGTIQVKI-GEETFPIVNTTPNALELQKTFHVMREKDVKQGIMEVSSHALDMGRVY 190
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRM---VDPERHRKVVNIDDPNATSF 120
D+DIAVFTNL++DH+D+H ++Y AK+ LF+++ D E+ + + I+D +++S
Sbjct: 191 GCDYDIAVFTNLSQDHLDYHQDIQDYLRAKSLLFAQLGNGYDSEKEKYAI-INDDDSSSH 249
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ + + V+T++ + K+A + EL+ + +++P G + I S L+G N+YN+
Sbjct: 250 LLKRSTAQHVITYSCK-KEATIMAKDIELTASGIRFKLHSPLGNITIQSRLMGMFNVYNM 308
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LAA A IA PL I + +E ++ V GR E I E Q + VIVD+AHTPD+L +L ++
Sbjct: 309 LAASAAAIASKVPLNVIQQALESIEGVNGRFEPIVEGQNYSVIVDFAHTPDSLENVLQTI 368
Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
++ A R + VVGC G+ DR KRPLM ++A + +D + TSDNP EDP ILDDM A +
Sbjct: 369 KDFAKRNVYVVVGCGGDRDRKKRPLMAEVALNYADHAVFTSDNPRTEDPQAILDDMTAEL 428
Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
Y + R+ + A+ ++ D+V++AGKGHETYQI
Sbjct: 429 DANSGSYEVVVD------------------RKEGIAKAIQSAQKDDIVLIAGKGHETYQI 470
Query: 361 EGDKKEFFDDREESREALQ 379
G K FDDR+ +R A++
Sbjct: 471 IGHTKYDFDDRDVARNAIK 489
>sp|A6LEU7|MURE_PARD8 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Parabacteroides distasonis (strain ATCC 8503 /
DSM 20701 / NCTC 11152) GN=murE PE=3 SV=1
Length = 486
Score = 228 bits (582), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 142/378 (37%), Positives = 203/378 (53%), Gaps = 29/378 (7%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
MG + G+LS+V YI G+ + + TTPD + + +LMA+M+ G E ME SSH +
Sbjct: 129 MGHKVGLLSTVCNYIDGE-AVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVSSHSIDQR 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + FD +FTNLTRDH+D+H T E Y AK K F + P + N DD +
Sbjct: 188 RISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL--PAGTFALTNADDKSG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
+ N +T+++ AD E T +++N E+ +GR N YN+
Sbjct: 244 VMLQNTKAKKLTYSLRT-LADFKGKILESHFEGTDLIINGR----EVMVHFVGRFNAYNL 298
Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
LA +++G E+++ + + +V GR E I + IVDYAHTPDAL+ +L+ +
Sbjct: 299 LAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALTNVLNGI 358
Query: 241 REL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
E+ RIITVVG G D+GKRPLM K A SD ILTSDNP E+P DI++DM+A
Sbjct: 359 HEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVILTSDNPRFEEPDDIINDMVA 418
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G+ E R R A++ A + ++GD+++VAGKGHE Y
Sbjct: 419 GLTKMDME-----------------RTLCITDRTQAIKTATMLAKKGDVILVAGKGHEDY 461
Query: 359 QIEGDKKEFFDDREESRE 376
Q K+ FDDRE+ RE
Sbjct: 462 QEIKGVKQHFDDREKLRE 479
>sp|Q46LZ6|MURE_PROMT UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Prochlorococcus marinus (strain NATL2A)
GN=murE PE=3 SV=1
Length = 509
Score = 228 bits (580), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 202/366 (55%), Gaps = 29/366 (7%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT AV +Q + K + G E ME SSH L+ R + DF+ AVFTNL+RDH+D+
Sbjct: 156 SKYTTTFAVPLQAKLRKAVQAGVEYGAMEVSSHALSQNRVAGCDFNGAVFTNLSRDHLDY 215
Query: 83 HGTEEEYRNAKAKLF-SRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTF---AMENK 138
H + E Y AKA LF S +++ R V+NIDD + N + + +
Sbjct: 216 HDSMESYFEAKASLFRSHLIEDGGPRSVINIDDKWGAKLAKELNKKCWTCSLKENSQTRE 275
Query: 139 KADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIV 198
KAD++ ++ + ++TP G+ S L+G N+ N+L AV + + G PL D++
Sbjct: 276 KADLYISNLQIMQDGYKGKLHTPFGVENFISPLIGEFNLMNMLQAVGILVQRGLPLNDLL 335
Query: 199 RGIEEVDAVPGRCELID------EEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVV 252
+ + VPGR +LI+ +E VIVDYAHTPD L L + R L RR+I V
Sbjct: 336 AALNKFPGVPGRMQLINMDGFKVKEGYPLVIVDYAHTPDGLQNALIASRSLTKRRLICVF 395
Query: 253 GCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGE 312
GC G+ D+GKR M ++A +D ++TSDNP EDP++I+ D+ G G T+ +
Sbjct: 396 GCGGDRDKGKRSKMGEVAAKFADYIVVTSDNPRQEDPIEIIKDI--GKGITIDSEIS--- 450
Query: 313 NDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDRE 372
+ R +A++ A+A ++ D+V++AGKGHE YQI D+ +FDDRE
Sbjct: 451 --------------VEPERSIAIQLAIAKAKKNDVVLIAGKGHEDYQILKDQTIYFDDRE 496
Query: 373 ESREAL 378
++R+AL
Sbjct: 497 QARKAL 502
>sp|Q64ZL7|MURE_BACFR UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacteroides fragilis (strain YCH46) GN=murE
PE=3 SV=1
Length = 485
Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 205/384 (53%), Gaps = 41/384 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNSFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTKSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I Q + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG+ ++ L + D R+ A+R A + E+GD+++VAG
Sbjct: 413 INDMLAGLDTEDKK----------------KTLSIAD-RKEAIRTACMLAEKGDVILVAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESRE 376
KGHE YQ K FDD+E +E
Sbjct: 456 KGHENYQDIKGVKHHFDDKEVLKE 479
>sp|Q5LIJ3|MURE_BACFN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC
9343) GN=murE PE=3 SV=1
Length = 485
Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 205/384 (53%), Gaps = 41/384 (10%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNSFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +VL + G+L E++ +G+
Sbjct: 244 VMTQNTKSKVYTYSLRS-----------LSDFKGRVLESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I Q + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P DI
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDI 412
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
++DMLAG+ ++ L + D R+ A+R A + E+GD+++VAG
Sbjct: 413 INDMLAGLDTEDKK----------------KTLSIAD-RKEAIRTACMLAEKGDVILVAG 455
Query: 353 KGHETYQIEGDKKEFFDDREESRE 376
KGHE YQ K FDD+E +E
Sbjct: 456 KGHENYQDIKGVKHHFDDKEVLKE 479
>sp|A2C0L8|MURE_PROM1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Prochlorococcus marinus (strain NATL1A)
GN=murE PE=3 SV=1
Length = 509
Score = 224 bits (571), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 204/371 (54%), Gaps = 39/371 (10%)
Query: 23 SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDF 82
S TT AV +Q + K + G E ME SSH L+ R + DF+ A+FTNL+RDH+D+
Sbjct: 156 SKYTTTFAVPLQAKLRKAVQAGVEYGAMEVSSHALSQNRVAGCDFNGAIFTNLSRDHLDY 215
Query: 83 HGTEEEYRNAKAKLF-SRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKAD 141
H + E Y AKA LF S ++D + R V+NIDD + + N + EN +
Sbjct: 216 HDSMESYFEAKASLFRSHLIDDDGPRSVINIDDKWGSILAKELNKKCWTCSLK-ENSQIR 274
Query: 142 VHPLKFELSLFETQVL-------VNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPL 194
P +L + Q++ ++TP G+ S L+G N+ N+L A+ + + G PL
Sbjct: 275 EKP---DLYISNLQIMQDGYMGKLHTPFGVGNFISPLIGEFNLMNMLQAIGILVQRGLPL 331
Query: 195 EDIVRGIEEVDAVPGRCELIDEEQAFGV-------IVDYAHTPDALSRLLDSVRELAPRR 247
D++ + + VPGR +LI+ + F V IVDYAHTPD L L + R L +R
Sbjct: 332 NDLLEALNKFPGVPGRMQLINMD-GFKVKDGYPLVIVDYAHTPDGLQNALIASRSLTKKR 390
Query: 248 IITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEY 307
+I V GC G+ D+GKR M ++A +D ++TSDNP EDP++I+ D+ G+ T+
Sbjct: 391 LICVFGCGGDRDKGKRSKMGEVAAKFADYIVVTSDNPRQEDPIEIIKDIQKGI--TIDSE 448
Query: 308 LKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEF 367
+ + R +A++ A+A ++ D+V++AGKGHE YQI D+ +
Sbjct: 449 IS-----------------VEPERSIAIQFAIAKAKKNDVVLIAGKGHEDYQILKDQTIY 491
Query: 368 FDDREESREAL 378
FDDRE++R+AL
Sbjct: 492 FDDREQARKAL 502
>sp|Q8R9G2|MURE_THETN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=murE PE=3 SV=2
Length = 482
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 211/375 (56%), Gaps = 27/375 (7%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ I GD + + TTP+++ +Q L + M++ G + VVME SSH LAL R
Sbjct: 130 KVGLVGTIQNMI-GDRVIPTTHTTPESLDLQELFSLMVNEGVKYVVMEVSSHSLALHRVD 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
DFDIAVFTNL++DH+DFH + EEY K+KLF + V+NIDD ++ I
Sbjct: 189 SCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFKMA----KKASVINIDDKYSSMMIES 244
Query: 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAA 183
V+T+ +++ A V + + SL + V EIS + G ++YN LAA
Sbjct: 245 SKG--KVLTYGIKD-FAYVMAKEIKNSLSGVKFKVQIQDKKEEISLKIPGLFSVYNALAA 301
Query: 184 VAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+ V +G PL + + V V GR E ++ + F V +DYAHTPD + ++++++E
Sbjct: 302 ITVADFLGIPLRSVREALSHV-TVKGRFEPVETGRDFYVFIDYAHTPDGIRNIMEALKEY 360
Query: 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWT 303
R I V G G+ D+ KRPLM ++A +D ILTSDNP +E+P +I+ + G+ T
Sbjct: 361 EAGRKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTSDNPRSENPKEIIAQIEEGIKKT 420
Query: 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGD 363
Y + + D RR A+R A++ ++ D++++AGKGHETYQI GD
Sbjct: 421 NCPY-----------------VVIED-RREAIRYALSNAQKDDVIILAGKGHETYQIIGD 462
Query: 364 KKEFFDDREESREAL 378
K FD+RE +E L
Sbjct: 463 KVIPFDEREIVKEIL 477
>sp|Q182Z8|MURE_CLOD6 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Clostridium difficile (strain 630) GN=murE
PE=3 SV=1
Length = 484
Score = 221 bits (564), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 196/389 (50%), Gaps = 49/389 (12%)
Query: 4 RTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCS 63
+ G++ ++ + G+ + S TTP+++ +Q ML NG + ME SSH LAL R
Sbjct: 130 KVGLIGTIKIF-DGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEVSSHSLALNRVD 188
Query: 64 EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123
E DF + +FTNLT DH+DFH E+YR AK KLF + ++NIDD
Sbjct: 189 ETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFKTT----MANIINIDDEGGKKIYEN 244
Query: 124 -GNPDVPVVTFAMENK--------KADVHPLKFELSL--FETQVLVNTPHGILEISSGLL 172
+VP T+ ++ K K+D + + L +E + + P
Sbjct: 245 IKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP----------- 293
Query: 173 GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232
G +YN LA +A +G P G+ + V GR E + ++ VIVDYAHTPDA
Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVPNDKGISVIVDYAHTPDA 353
Query: 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
L +L + ++ A +II+V GC G+ D KRPLM I SD+ I+TSDNP E+P I
Sbjct: 354 LENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIITSDNPRTEEPEAI 413
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI--RRVAVRCAVAMGEEGDMVVV 350
+ D+L G+ + Y H + R A+ A++M ++ D+V++
Sbjct: 414 IKDILEGIDKKKENY--------------------HVVVDREQAIAEAISMAKKDDVVII 453
Query: 351 AGKGHETYQIEGDKKEFFDDREESREALQ 379
GKGHETYQI G K FDD+E + E L
Sbjct: 454 TGKGHETYQIIGKVKHHFDDKEVANECLS 482
>sp|Q59650|MURE_PSEAE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=murE PE=3 SV=2
Length = 487
Score = 221 bits (564), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 139/379 (36%), Positives = 204/379 (53%), Gaps = 26/379 (6%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPR-TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
+G R G++ ++ +G LES R TTPD + VQ +A + G AV ME SSHGL
Sbjct: 126 LGERCGIVGTLGTGFYG--ALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
GR + + FDIAVFTNL+RDH+D+HG+ E Y AKAKLF+ P +V+N+DD
Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAW---PGLRCRVINLDDDFGRR 240
Query: 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYN 179
+ D ++T+++ + A ++ + + + TPHG + S LLGR N+ N
Sbjct: 241 LAGE-EQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSN 299
Query: 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239
+LAAV + +G PL DI+R + ++ GR + + V+VDYAHTPDAL ++L++
Sbjct: 300 LLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDALEKVLEA 359
Query: 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAG 299
+R A R++ + GC G+ D GKRPLM IA +D ++T DNP E I+ D+ G
Sbjct: 360 LRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEASAAIIADIRKG 419
Query: 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359
+ D LP+ H I AV D+V++AGKGHE YQ
Sbjct: 420 ----------FAAADKVTFLPSRGEAIAHLIASAAVD---------DVVLLAGKGHEDYQ 460
Query: 360 IEGDKKEFFDDREESREAL 378
+ F D E++ AL
Sbjct: 461 EIDGVRHPFSDIEQAERAL 479
>sp|Q8A254|MURE_BACTN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=murE
PE=3 SV=1
Length = 482
Score = 221 bits (563), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 204/385 (52%), Gaps = 43/385 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
G + G++S+V YI D + + TTPD + + L+ +M G + V ME SSH +A
Sbjct: 129 FGYKVGLISTVCNYID-DQPIPTEHTTPDPITLNRLLGQMADEGCKYVFMEVSSHSIAQK 187
Query: 61 RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
R S + F +FTNLTRDH+D+H T E Y AK K F M P+ + N+DD N
Sbjct: 188 RISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM--PKNAFSLTNLDDKNG--L 243
Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL------EISSGLLGR 174
+ N V T+++ + LS F+ +V+ + G+L E++ +G+
Sbjct: 244 VMTQNTRSKVYTYSLRS-----------LSDFKGRVIESHFEGMLLDFNNHELAVQFIGK 292
Query: 175 HNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALS 234
N N+LA + +G ED++ + + V GR + I + IVDYAHTPDAL
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSPKGVTAIVDYAHTPDALV 352
Query: 235 RLLDSVREL--APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+L+++ + ++ITVVG G D+GKRP+M K A SD I+TSDNP E+P +I
Sbjct: 353 NVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQEI 412
Query: 293 LDDMLAGV-GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVA 351
++DMLAG+ M++ L + R+ A+R A + E+GD+++VA
Sbjct: 413 INDMLAGLDAEDMKKTLSIAD------------------RKEAIRTACMLAEKGDVILVA 454
Query: 352 GKGHETYQIEGDKKEFFDDREESRE 376
GKGHE YQ K FDD+E +E
Sbjct: 455 GKGHENYQEIKGVKHHFDDKEVLKE 479
>sp|O84271|MURE_CHLTR UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=murE PE=3 SV=1
Length = 483
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 141/380 (37%), Positives = 214/380 (56%), Gaps = 31/380 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ + I G+N++ TTPDA+++Q A+M+ A VME SS G+ALGR
Sbjct: 128 GRRTGLIGTIEH-ILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVMEVSSIGMALGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
E +F V TN+T DH+DFHG+ EEY AK + F+ + PE+ VVN+D A SF+
Sbjct: 187 VRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASL--PEKGIAVVNLDCEYAPSFL 244
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
V++A+ +++AD + +L + + + + L+G HN+YN+L
Sbjct: 245 --NGSQARAVSYAI-HQEADYRADRLKLYSSGSSYDIWYQGQVFPCETSLIGEHNVYNVL 301
Query: 182 AAVA-VGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
A++A V +G D+VR + + A GR + I F V +DYAHTPDAL + +
Sbjct: 302 ASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPI-LLGPFPVYIDYAHTPDALDNVCRIL 360
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+L P+ R+I V GC G+ DR KRPLM K+ ++ + +TSDNP EDP I+ D+
Sbjct: 361 LQLLPKDGRLIIVFGCGGDRDRVKRPLMAKV-SEHYGFSFVTSDNPRTEDPDQIIADICK 419
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G++ Y+ E+D R++A+ A++M + D+V+VAGKGHE Y
Sbjct: 420 --GFSTDHYVV--ESD----------------RKLAIEKAISMASDKDIVLVAGKGHEGY 459
Query: 359 QIEGDKKEFFDDREESREAL 378
QI + FDDRE EAL
Sbjct: 460 QIFKHQTIVFDDREVVCEAL 479
>sp|Q3KM93|MURE_CHLTA UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Chlamydia trachomatis serovar A (strain HAR-13
/ ATCC VR-571B) GN=murE PE=3 SV=1
Length = 483
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 141/380 (37%), Positives = 214/380 (56%), Gaps = 31/380 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ ++ + I G+N++ TTPDA+++Q A+M+ A VME SS G+ALGR
Sbjct: 128 GRRTGLIGTIEH-ILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVMEVSSIGMALGR 186
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
E +F V TN+T DH+DFHG+ EEY AK + F+ + PE+ VVN+D A SF+
Sbjct: 187 VRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASL--PEKGIAVVNLDCEYAPSFL 244
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
V++A+ +++AD + +L + + + + L+G HN+YN+L
Sbjct: 245 --NGSQARAVSYAI-HQEADYRADRLKLYSSGSSYDIWYQGQVFPCETSLIGEHNVYNVL 301
Query: 182 AAVA-VGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
A++A V +G D+VR + + A GR + I F V +DYAHTPDAL + +
Sbjct: 302 ASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPI-LLGPFPVYIDYAHTPDALDNVCRIL 360
Query: 241 RELAPR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
+L P+ R+I V GC G+ DR KRPLM K+ ++ + +TSDNP EDP I+ D+
Sbjct: 361 LQLLPKDGRLIIVFGCGGDRDRVKRPLMAKV-SEHYGFSFVTSDNPRTEDPDQIIADICK 419
Query: 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
G++ Y+ E+D R++A+ A++M + D+V+VAGKGHE Y
Sbjct: 420 --GFSTDHYVV--ESD----------------RKLAIEKAISMASDKDIVLVAGKGHEGY 459
Query: 359 QIEGDKKEFFDDREESREAL 378
QI + FDDRE EAL
Sbjct: 460 QIFKHQTIVFDDREVVCEAL 479
>sp|A4XQR9|MURE_PSEMY UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Pseudomonas mendocina (strain ymp) GN=murE
PE=3 SV=1
Length = 487
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/369 (35%), Positives = 202/369 (54%), Gaps = 25/369 (6%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G R G++ ++ HG + + TTPD V VQ +A + G AV ME SSHGL GR
Sbjct: 127 GERCGIVGTLGTGFHGALE-QGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLDQGR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ ++FD+AVFTNL+RDH+D+HG+ E Y AKAKLF+ P +V+N+DD +
Sbjct: 186 VAALEFDVAVFTNLSRDHLDYHGSMEAYGAAKAKLFAW---PNLRCRVINLDDAFGRE-L 241
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
AQ D ++ +++ + A ++ + + + + TP G + S LLGR N+ N+L
Sbjct: 242 AQQAHDSRLIGYSLSDASAFLYCSEAQFDDHGVRARLVTPRGEGVLRSNLLGRFNLSNLL 301
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
A V + + L++I++ + ++ GR + + V+VDYAHTPDAL ++L+++R
Sbjct: 302 AVVGALLGMDYGLDEILKVLPQLQGPAGRMQRLGGGDKPLVVVDYAHTPDALEKVLEAMR 361
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
R++ + GC G+ DRGKRPLM +A +DV +T DNP +EDP I+ D+ AG
Sbjct: 362 PHVQGRLVCLFGCGGDRDRGKRPLMAAVAERLADVVWVTDDNPRSEDPAQIVADIRAGFC 421
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ-I 360
Q +G D A+ +A E D++V+AGKGHE YQ I
Sbjct: 422 APEQVQFIHGRGD-------------------AIARLIAQAEAADVLVLAGKGHEDYQEI 462
Query: 361 EGDKKEFFD 369
G + F D
Sbjct: 463 TGVRHPFSD 471
>sp|A1BJY3|MURE_CHLPD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Chlorobium phaeobacteroides (strain DSM 266)
GN=murE PE=3 SV=1
Length = 512
Score = 219 bits (557), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 207/386 (53%), Gaps = 32/386 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G+RTG + + + G+ ++ RTTP+A ++ L +ML +G VME SSH L L R
Sbjct: 133 GIRTGYIGT-NLCTFGEQQIPLDRTTPEAHILHALFRRMLDSGCSVAVMEVSSHALVLQR 191
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ F AVFTNL+ +H+DFH T +EY AK +LF ++ P+ V+N DDP A +
Sbjct: 192 VYGITFHAAVFTNLSMEHLDFHKTMQEYAGAKRQLFEQL-SPQGF-AVINSDDPRAEEMV 249
Query: 122 AQGNPDVP-VVTFAMENKKADVHPLKFELSLFETQVLVNT-----PHGILEISSGLLGRH 175
++ NP+ T + A +F L + + T P IS+ L G++
Sbjct: 250 SKINPEKRFCCTLDQTGRVAGDASRRFSAELIDQSIASATIRLCFPDAQQTISTVLPGQY 309
Query: 176 NIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE-LIDEEQAFGVIVDYAHTPDALS 234
N+ N+L A AVG +G + ++ + V GR E ++D + V VDYAHTPDAL
Sbjct: 310 NVMNLLQAAAVGCGMGLGSPVVAAALDALPGVAGRMERIMDRRRKEFVFVDYAHTPDALF 369
Query: 235 RLLDSVRELA--PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+ L ++ L R+I V GC G DR KRP M +IA + +D+ ILTSDNP +EDP I
Sbjct: 370 KALSTLNALKSPASRLIVVFGCGGNRDRLKRPEMGRIAVENADLVILTSDNPRDEDPEMI 429
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+D++ G+ + N R+ R A+R AVA+ + GD+++VAG
Sbjct: 430 IDEIEKGI-----------------RVKNHKRI---TDRAQAIRTAVALLQPGDVLLVAG 469
Query: 353 KGHETYQIEGDKKEFFDDREESREAL 378
KGHE YQ +K FF D+E R AL
Sbjct: 470 KGHEQYQETAGEKSFFSDQETLRNAL 495
>sp|Q7MWM7|MURE_PORGI UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Porphyromonas gingivalis (strain ATCC BAA-308
/ W83) GN=murE PE=3 SV=1
Length = 487
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/380 (36%), Positives = 203/380 (53%), Gaps = 42/380 (11%)
Query: 1 MGLRTGMLSSVSYYIHGDNKLE-SPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLAL 59
MG + G++S+V Y+ D++ E + TTPD + + L +M G E ME SSH A
Sbjct: 129 MGYKAGLVSTVCNYV--DDRSEPTTHTTPDPLALNALFRRMADAGCEYAFMEVSSHAAAQ 186
Query: 60 GRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119
R +DFD +FTNLTRDH+D+HG+ EY AK F + + +VN DD N
Sbjct: 187 KRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGL--GAQAFALVNADDKNGLV 244
Query: 120 FIAQGNPDVPVVTFA---MENKKADV---HPLKFELSLFETQVLVNTPHGILEISSGLLG 173
+ N V T+A M N +A + H ++ + + +V V L+G
Sbjct: 245 MVQ--NTRARVCTYALKSMANYRAKIVERHIDGMDMYMDDREVFVR-----------LVG 291
Query: 174 RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDAL 233
N YN+L +G E+++R + E+ +V GR + + + IVDYAHTPDAL
Sbjct: 292 DFNAYNLLCVYGASCELGQDREEVLRILSELTSVDGRFQTFTSKDGYVAIVDYAHTPDAL 351
Query: 234 SRLLDSVRELA-PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDI 292
+LD++R LA ++ITVVG G D+GKRP+M K A +S+ ILTSDNP +E+P +I
Sbjct: 352 INVLDTIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILTSDNPRDEEPQEI 411
Query: 293 LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352
+ +M +G + ++ K L + D R A+R A + E+GD V++AG
Sbjct: 412 IQEM--AIGLSTEDRKK--------------TLLITD-RAEAIRTACMLAEKGDFVLIAG 454
Query: 353 KGHETYQIEGDKKEFFDDRE 372
KGHETYQ K FDDRE
Sbjct: 455 KGHETYQEIRGVKHHFDDRE 474
>sp|Q1MPC4|MURE_LAWIP UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Lawsonia intracellularis (strain PHE/MN1-00)
GN=murE PE=3 SV=1
Length = 482
Score = 216 bits (549), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 136/381 (35%), Positives = 204/381 (53%), Gaps = 29/381 (7%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G RTG++ +++Y G +K E+P TTP + + ++A+M + TE V ME SSH L R
Sbjct: 124 GNRTGVIGTIAYRWPGFSK-EAPLTTPQCLDLHAMLAQMQVDKTEIVFMEVSSHALDQRR 182
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
+ + F +FTNLT+DH+D+H +EY +AKA+LF P +++ +V D +
Sbjct: 183 IAGISFKGVIFTNLTQDHLDYHKDMKEYFHAKARLFFEY--PSKNKIMVASMDNQWGRKL 240
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQ----VLVNTPHGILEISSGLLGRHNI 177
A+ P++ + F +NK V F L ++ + ++ + E+ + L+G HN
Sbjct: 241 AKLVPEI--IGFGFKNKPTQVSNYLFGKILSSSRAGLHLQMSFKDKVWELCTPLVGVHNA 298
Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
N+LA A+ + +G ED E+ VPGR E I ++ + VDYAHTPDAL +L
Sbjct: 299 ENLLAVQAISLQLGLAPEDFC-CFEKFTGVPGRLERIVNKKQLDIFVDYAHTPDALINVL 357
Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
++R++ +RIITV GC G D+ KRPLM K SDV +LTSDNP NEDP I+ D+L
Sbjct: 358 SALRDVGFKRIITVFGCGGNRDKAKRPLMGKAVAKLSDVAVLTSDNPRNEDPELIMADVL 417
Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
P L ++ R A+R A+ + GD ++VAGKGHE
Sbjct: 418 -------------------PGLKKAKQIITEPDREKAIRQAIELVSPGDALLVAGKGHEC 458
Query: 358 YQIEGDKKEFFDDREESREAL 378
Q G K F D+ R+ L
Sbjct: 459 TQQIGFMKYPFSDQSVIRKIL 479
>sp|O67631|MURE_AQUAE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Aquifex aeolicus (strain VF5) GN=murE PE=3
SV=1
Length = 482
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 204/369 (55%), Gaps = 31/369 (8%)
Query: 2 GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
G +TG++ ++ YY G+ L S RTTPD + + + G + VV E SSH L R
Sbjct: 127 GEKTGLIGTI-YYRLGEKILGSGRTTPDQITWHRTLKEFYELGAKNVVAEISSHALDQYR 185
Query: 62 CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121
F+ +FTNL++DH+D+H T E+Y +KAKLF+ + E K++N DD +
Sbjct: 186 VYPTRFEAVLFTNLSQDHLDYHKTMEDYFASKAKLFT---EYESKVKIINADDTYGKRLL 242
Query: 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181
+ ++ +T+ KK D+ L F + + + E S+ L+G YN+
Sbjct: 243 KITHGEI--ITYG---KKGDLKILNFRTDFRGSALRIAFKGKEYEFSTNLIGDFQAYNLS 297
Query: 182 AAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241
AA+A + G + I R ++ V+ VPGR E++ ++ F VI+DYAHTPDA+ +L + R
Sbjct: 298 AAIAYALWKGIEPDLIQRALKCVN-VPGRFEVVHSDK-FTVIIDYAHTPDAVENVLRTAR 355
Query: 242 ELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
+L+ ++I+V G G DR KRPLM K A SD+ ILTSDNP +E+P I++D+L G+
Sbjct: 356 KLSKGKLISVFGAGGNRDREKRPLMGKAAEKYSDLIILTSDNPRDEEPEKIIEDILDGIS 415
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ-I 360
E D ++ + RR A++ A+ M +EGDMV + GKGHE YQ I
Sbjct: 416 ----------EKD---------KVIIEADRRKAIKKAIDMAKEGDMVAILGKGHEDYQEI 456
Query: 361 EGDKKEFFD 369
+G K F D
Sbjct: 457 KGVKYPFSD 465
>sp|Q9Z8C5|MURE_CHLPN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Chlamydia pneumoniae GN=murE PE=3 SV=1
Length = 483
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 207/377 (54%), Gaps = 31/377 (8%)
Query: 5 TGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE 64
+G+L ++ + I G+ ++ TTP ++Q +A M+ +AVVME SS GLA GR +
Sbjct: 131 SGLLGTIEH-ILGEGVIKDGFTTPTPALLQKYLATMVRQNRDAVVMEVSSIGLASGRVAY 189
Query: 65 VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124
+FD AV TN+T DH+DFHGT E Y AKAKLFS + P V+N D P A+ I
Sbjct: 190 TNFDTAVLTNITLDHLDFHGTFETYVAAKAKLFSLV--PPSGMVVINTDSPYASQCIESA 247
Query: 125 NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAV 184
PV+T+ +E+ AD +LS T+ + + SS +G++N+YN+LAA+
Sbjct: 248 K--APVITYGIES-AADYRATDIQLSSSGTKYTLVYGDQKIACSSSFIGKYNVYNLLAAI 304
Query: 185 A-VGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL 243
+ V ++ LED++ I PGR + + V +DYAHTPDAL +L + EL
Sbjct: 305 STVHASLRCDLEDLLEKIGLCQPPPGRLDPVLMGPC-PVYIDYAHTPDALDNVLTGLHEL 363
Query: 244 APR--RIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301
P R+I V GC G+ DR KR LM ++ ++ ++TSDNP +E P DI++++ G
Sbjct: 364 LPEGGRLIVVFGCGGDRDRSKRKLMAQV-VERYGFAVVTSDNPRSEPPEDIVNEICDGF- 421
Query: 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361
Y +N F+ R+ A+ A+++ + D+V++AGKGHE YQI
Sbjct: 422 --------YSKN-----------YFIEIDRKQAITYALSIASDRDIVLIAGKGHEAYQIF 462
Query: 362 GDKKEFFDDREESREAL 378
+ FDD++ E L
Sbjct: 463 KHQTVAFDDKQTVCEVL 479
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,315,514
Number of Sequences: 539616
Number of extensions: 6943734
Number of successful extensions: 22441
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 471
Number of HSP's that attempted gapping in prelim test: 19830
Number of HSP's gapped (non-prelim): 1573
length of query: 402
length of database: 191,569,459
effective HSP length: 120
effective length of query: 282
effective length of database: 126,815,539
effective search space: 35761981998
effective search space used: 35761981998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)