Query 041678
Match_columns 402
No_of_seqs 215 out of 1878
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:33:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00139 murE UDP-N-acetylmura 100.0 1.5E-50 3.3E-55 403.7 42.0 340 1-380 120-459 (460)
2 COG0769 MurE UDP-N-acetylmuram 100.0 1.2E-50 2.6E-55 399.4 35.8 358 1-380 116-474 (475)
3 PRK11929 putative bifunctional 100.0 1.1E-49 2.4E-54 430.3 44.3 357 1-380 137-499 (958)
4 TIGR01085 murE UDP-N-acetylmur 100.0 2.3E-48 5E-53 389.1 42.8 346 1-370 110-463 (464)
5 PRK14022 UDP-N-acetylmuramoyla 100.0 2.4E-47 5.2E-52 382.8 40.8 339 1-378 135-480 (481)
6 TIGR01499 folC folylpolyglutam 100.0 3.9E-47 8.5E-52 372.9 28.5 319 1-367 43-396 (397)
7 TIGR01143 murF UDP-N-acetylmur 100.0 2E-43 4.4E-48 348.7 30.0 316 3-355 75-407 (417)
8 PRK10846 bifunctional folylpol 100.0 5.3E-42 1.2E-46 337.9 28.4 312 1-368 74-414 (416)
9 PRK10773 murF UDP-N-acetylmura 100.0 6E-42 1.3E-46 341.1 28.9 316 3-353 101-435 (453)
10 PRK03803 murD UDP-N-acetylmura 100.0 1.4E-41 3.1E-46 338.8 31.6 330 3-382 109-447 (448)
11 COG0770 MurF UDP-N-acetylmuram 100.0 6.4E-42 1.4E-46 333.6 28.1 318 3-354 104-437 (451)
12 COG0771 MurD UDP-N-acetylmuram 100.0 5E-42 1.1E-46 331.1 26.3 322 3-382 111-447 (448)
13 PRK14093 UDP-N-acetylmuramoyla 100.0 4.2E-41 9E-46 337.1 30.7 321 2-354 108-453 (479)
14 COG0285 FolC Folylpolyglutamat 100.0 1.6E-41 3.5E-46 326.8 26.2 296 25-370 116-423 (427)
15 PLN02913 dihydrofolate synthet 100.0 4.1E-41 8.9E-46 336.9 29.6 314 27-368 154-508 (510)
16 TIGR01087 murD UDP-N-acetylmur 100.0 3.4E-40 7.3E-45 327.8 32.2 284 43-379 148-432 (433)
17 PRK01390 murD UDP-N-acetylmura 100.0 1.9E-40 4.1E-45 331.8 30.5 288 43-381 160-458 (460)
18 COG0773 MurC UDP-N-acetylmuram 100.0 9.6E-40 2.1E-44 311.7 32.1 283 44-355 155-445 (459)
19 PRK01368 murD UDP-N-acetylmura 100.0 6E-40 1.3E-44 325.3 31.4 293 43-384 148-449 (454)
20 PRK01438 murD UDP-N-acetylmura 100.0 3.5E-40 7.6E-45 331.7 28.8 333 3-382 123-477 (480)
21 TIGR02068 cya_phycin_syn cyano 100.0 1.8E-39 4E-44 343.3 35.5 324 1-352 504-848 (864)
22 PRK00421 murC UDP-N-acetylmura 100.0 2.8E-39 6.1E-44 323.2 34.4 282 43-355 154-444 (461)
23 PRK04663 murD UDP-N-acetylmura 100.0 2.8E-40 6.1E-45 328.1 25.8 321 3-381 109-437 (438)
24 PRK01710 murD UDP-N-acetylmura 100.0 7.2E-40 1.6E-44 326.8 28.5 327 3-380 118-457 (458)
25 PRK03369 murD UDP-N-acetylmura 100.0 2E-40 4.3E-45 332.4 24.3 345 3-381 118-486 (488)
26 PRK11930 putative bifunctional 100.0 2.1E-40 4.5E-45 352.0 25.6 324 2-359 107-447 (822)
27 PRK00141 murD UDP-N-acetylmura 100.0 3.4E-39 7.3E-44 322.6 31.7 293 42-383 167-468 (473)
28 PRK04308 murD UDP-N-acetylmura 100.0 1.9E-39 4.1E-44 323.3 29.8 285 43-381 159-445 (445)
29 PRK02705 murD UDP-N-acetylmura 100.0 3.4E-39 7.3E-44 323.1 29.7 295 42-383 159-457 (459)
30 PRK02472 murD UDP-N-acetylmura 100.0 6E-39 1.3E-43 320.3 31.2 288 43-382 155-445 (447)
31 PRK03806 murD UDP-N-acetylmura 100.0 1.1E-38 2.3E-43 317.4 32.5 286 41-380 148-436 (438)
32 PRK14106 murD UDP-N-acetylmura 100.0 2E-38 4.3E-43 316.8 31.3 329 3-380 109-449 (450)
33 TIGR01082 murC UDP-N-acetylmur 100.0 5.7E-38 1.2E-42 312.7 34.3 284 43-355 146-439 (448)
34 PRK11929 putative bifunctional 100.0 1.2E-38 2.6E-43 344.6 31.3 320 3-355 604-947 (958)
35 PRK02006 murD UDP-N-acetylmura 100.0 1.6E-37 3.5E-42 313.2 35.1 293 45-382 174-491 (498)
36 PRK04690 murD UDP-N-acetylmura 100.0 9.1E-38 2E-42 311.6 30.5 289 43-381 162-455 (468)
37 TIGR01081 mpl UDP-N-acetylmura 100.0 1.6E-36 3.5E-41 302.2 35.5 279 43-355 149-435 (448)
38 PLN02881 tetrahydrofolylpolygl 100.0 2.9E-35 6.2E-40 290.2 30.3 330 1-369 86-529 (530)
39 PRK03815 murD UDP-N-acetylmura 100.0 2.4E-35 5.3E-40 287.4 24.3 306 3-380 90-400 (401)
40 PRK00683 murD UDP-N-acetylmura 100.0 3.7E-33 7.9E-38 275.6 25.0 307 3-384 103-417 (418)
41 PRK14573 bifunctional D-alanyl 100.0 6.6E-32 1.4E-36 286.4 31.1 227 43-284 150-381 (809)
42 KOG2525 Folylpolyglutamate syn 100.0 1.6E-27 3.6E-32 226.2 19.1 307 25-370 147-494 (496)
43 PF08245 Mur_ligase_M: Mur lig 99.9 1.8E-23 3.8E-28 184.4 20.8 157 26-187 30-188 (188)
44 PRK14016 cyanophycin synthetas 99.9 4.8E-24 1E-28 222.2 18.9 204 1-214 505-727 (727)
45 PF02875 Mur_ligase_C: Mur lig 99.7 3.3E-16 7.1E-21 121.0 7.8 86 207-292 1-90 (91)
46 PF08353 DUF1727: Domain of un 84.3 16 0.00035 29.0 9.8 102 227-352 2-108 (113)
47 KOG1324 Dihydrofolate reductas 54.3 33 0.00072 29.5 5.3 74 202-283 61-140 (190)
48 PLN00124 succinyl-CoA ligase [ 50.6 66 0.0014 32.0 7.7 98 220-342 318-420 (422)
49 TIGR01033 DNA-binding regulato 46.7 1.1E+02 0.0023 27.9 7.8 62 180-242 49-118 (238)
50 COG1926 Predicted phosphoribos 46.5 1.4E+02 0.0031 26.4 8.2 32 219-250 126-157 (220)
51 PF01709 Transcrip_reg: Transc 37.9 1.2E+02 0.0026 27.4 6.8 62 180-242 45-114 (234)
52 PF12049 DUF3531: Protein of u 34.5 89 0.0019 25.8 4.7 86 169-256 41-132 (146)
53 PF03808 Glyco_tran_WecB: Glyc 34.1 2.9E+02 0.0063 23.4 9.1 59 221-282 50-110 (172)
54 COG2845 Uncharacterized protei 33.3 2.8E+02 0.006 26.5 8.3 60 328-387 162-221 (354)
55 PRK00110 hypothetical protein; 31.5 2.6E+02 0.0056 25.5 7.8 60 180-240 49-116 (245)
56 cd06182 CYPOR_like NADPH cytoc 31.3 4.1E+02 0.009 24.3 11.1 67 206-272 102-175 (267)
57 PF09949 DUF2183: Uncharacteri 29.7 1.4E+02 0.003 23.1 5.0 33 244-279 62-94 (100)
58 PRK12378 hypothetical protein; 29.4 3.1E+02 0.0067 24.9 7.9 60 180-240 47-113 (235)
59 KOG1257 NADP+-dependent malic 27.9 6.2E+02 0.013 26.0 10.1 86 191-284 337-426 (582)
60 PF00186 DHFR_1: Dihydrofolate 26.0 45 0.00097 28.3 1.8 67 204-282 52-118 (161)
61 PRK11890 phosphate acetyltrans 25.6 3.1E+02 0.0067 26.1 7.5 21 222-242 25-45 (312)
62 COG0856 Orotate phosphoribosyl 25.1 2.3E+02 0.0049 24.5 5.7 35 219-253 143-178 (203)
63 TIGR00696 wecB_tagA_cpsF bacte 25.0 2E+02 0.0043 24.8 5.7 58 226-285 54-112 (177)
64 PRK13699 putative methylase; P 24.0 1.8E+02 0.0038 26.2 5.4 72 330-401 148-226 (227)
65 PRK06388 amidophosphoribosyltr 23.5 2.8E+02 0.006 28.1 7.1 40 218-257 357-396 (474)
66 COG2216 KdpB High-affinity K+ 23.3 5.6E+02 0.012 26.4 8.9 104 226-355 408-519 (681)
67 PRK13809 orotate phosphoribosy 23.2 1.3E+02 0.0028 26.7 4.3 63 181-244 80-145 (206)
68 KOG0062 ATPase component of AB 23.1 4.9E+02 0.011 26.7 8.5 103 167-283 427-555 (582)
69 PRK05793 amidophosphoribosyltr 22.3 2.1E+02 0.0046 28.9 6.1 41 218-258 354-394 (469)
70 COG1703 ArgK Putative periplas 20.6 6.9E+02 0.015 23.7 8.5 69 33-116 132-202 (323)
71 COG1105 FruK Fructose-1-phosph 20.4 2.2E+02 0.0047 27.1 5.3 26 328-353 113-138 (310)
72 PRK13810 orotate phosphoribosy 20.4 1.3E+02 0.0028 26.2 3.7 64 180-244 85-149 (187)
No 1
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=1.5e-50 Score=403.73 Aligned_cols=340 Identities=45% Similarity=0.693 Sum_probs=281.7
Q ss_pred CCCceEEEeccceEeCCceecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchh
Q 041678 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM 80 (402)
Q Consensus 1 ~g~~~g~~~t~g~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl 80 (402)
.|.++|+.||.+..+++. ..+...+||+++.+..+|..+.+.++|++|+|+|++|....++..++|+++|||||++||+
T Consensus 120 ~g~~~~~~gn~~~~i~~~-~~~~~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~~~~~l~~~~p~iaViTnI~~dHl 198 (460)
T PRK00139 120 LGEKTALIGTLGNGIGGE-LIPSGLTTPDALDLQRLLAELVDAGVTYAAMEVSSHALDQGRVDGLKFDVAVFTNLSRDHL 198 (460)
T ss_pred cCCCEEEECCcccccCCe-ecccCCCCcCHHHHHHHHHHHHHCCCCEEEEEcchhhHhhchhcCCcCCEEEEcCCCcccC
Confidence 478899999999998763 3445678999999999998998999999999999877533445568999999999999999
Q ss_pred ccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEc
Q 041678 81 DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNT 160 (402)
Q Consensus 81 ~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
++|||+|+|+++|++|++.. .+.+|+|.||+....+.. ++.+|+.....+++....+.....+..|.+..
T Consensus 199 ~~~gt~e~i~~~K~~i~~~~----~~~~v~n~dd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (460)
T PRK00139 199 DYHGTMEDYLAAKARLFSEL----GLAAVINADDEVGRRLLA------LPDAYAVSMAGADLRATDVEYTDSGQTFTLVT 268 (460)
T ss_pred CcCCCHHHHHHHHHHHHhcC----CCeEEEEcCcHhHHHHHh------hcEEEEecCCCCcEEEEEEEEecCceEEEEEE
Confidence 99999999999999999863 248999999998776653 13566652123456554443333344454431
Q ss_pred CCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHH
Q 041678 161 PHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240 (402)
Q Consensus 161 ~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l 240 (402)
.+.++++|.||++|+++|++++..+|++++.|+++|++|++++||||++...+++++|+||||||+|++++++++
T Consensus 269 -----~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~iI~DyahNP~s~~aal~~l 343 (460)
T PRK00139 269 -----EVESPLIGRFNVSNLLAALAALLALGVPLEDALAALAKLQGVPGRMERVDAGQGPLVIVDYAHTPDALEKVLEAL 343 (460)
T ss_pred -----EEEecccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEECCCCHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999986568899999999999999999999
Q ss_pred hhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCC
Q 041678 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLP 320 (402)
Q Consensus 241 ~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (402)
++.+++|+++|+|++++|+..++.++..+.....|.+++++++++.+++.++.+.+..+.
T Consensus 344 ~~~~~~r~i~VlG~g~~k~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~-------------------- 403 (460)
T PRK00139 344 RPHAKGRLICVFGCGGDRDKGKRPLMGAIAERLADVVIVTSDNPRSEDPAAIIADILAGI-------------------- 403 (460)
T ss_pred HhhcCCcEEEEECCCCCCchhhhHHHHHHHHHcCCEEEEECCCCCCCCHHHHHHHHHhCC--------------------
Confidence 876556899999998899998888888888788899999998899998877665432210
Q ss_pred CCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHh
Q 041678 321 NGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQY 380 (402)
Q Consensus 321 ~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (402)
...++++++|++.+.+.+++||+||++|+|++.|+.+.+.+.+|.+.+..++++++
T Consensus 404 ----~~~~~d~~~Ai~~~~~~~~~gDvVLv~G~G~e~~~~~~~~~~~~~d~~~~~~~l~~ 459 (460)
T PRK00139 404 ----YDVIEDRAEAIRYAIAQAKPGDVVLIAGKGHEDYQIIGGVKIPFDDREVAREALAE 459 (460)
T ss_pred ----CcccCCHHHHHHHHHHhcCCCCEEEEEEccCcccEEECCEEecCChHHHHHHHHhh
Confidence 12356789999999999999999999999999999999999999999999998754
No 2
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-50 Score=399.36 Aligned_cols=358 Identities=42% Similarity=0.623 Sum_probs=308.3
Q ss_pred CCCceEEEeccceEeCCceecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchh
Q 041678 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM 80 (402)
Q Consensus 1 ~g~~~g~~~t~g~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl 80 (402)
.|+++|++||.|..++.....+...|||+++.++..++.+.+..++++++|++++++...+...+..+++++||++.||+
T Consensus 116 ~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmEvssh~l~~~Rv~~~~f~v~~ftnls~DHl 195 (475)
T COG0769 116 LGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVSSHGLVQGRVEGVTFDVGVFTNLSRDHL 195 (475)
T ss_pred cCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcEEEEEeehhHHHhCCccCceEEEEeccccCchhh
Confidence 48899999999999842334477789999999999999999999999999999999866667777899999999999999
Q ss_pred ccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccC-CCCCEEEEeccCCCCceEEeeEEeecCceEEEEE
Q 041678 81 DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGN-PDVPVVTFAMENKKADVHPLKFELSLFETQVLVN 159 (402)
Q Consensus 81 ~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (402)
++|+|+|+|..+|..+|..+ +..+..|+|.||+....+..... ....+++++............++....+..+.+.
T Consensus 196 D~h~t~e~Y~~aK~~lf~~~--~~~~~~Vin~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~ 273 (475)
T COG0769 196 DYHGTMEYYGAAKAVLFESL--PHSGEAVINPDDGHGLDYKERLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFE 273 (475)
T ss_pred cccCcHHHHHHHHHHHHhhc--CCCccEEEccCCchHHHHHHHHHhcCCCEEEeCCCCchhhhhhccceeeeccceeEEE
Confidence 99999999999999999733 56678999999998744333221 2336889987543333322235555666666677
Q ss_pred cCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHH
Q 041678 160 TPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDS 239 (402)
Q Consensus 160 ~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~ 239 (402)
..++...+.+|++|.||++|+++|++++..+|+|.+.|.++|+++++++||||.+... +..+++||||||+|+++++++
T Consensus 274 ~~~~~~~~~~~L~G~fNv~NaLaA~a~~~~lG~~~e~i~~~l~~~~~v~GRmE~v~~~-~~~v~VDyAHnPd~le~~L~~ 352 (475)
T COG0769 274 PSGGIGEYELPLPGLFNVYNALAAVAAALALGVDLEDILAGLETLKPVPGRMELVNIG-GKLVIVDYAHNPDGLEKALRA 352 (475)
T ss_pred ccCCceeEeccccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCcceEecCC-CCeEEEEeccChHHHHHHHHH
Confidence 7777889999999999999999999999999999999999999999999999999876 889999999999999999999
Q ss_pred HhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCC
Q 041678 240 VRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPL 319 (402)
Q Consensus 240 l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (402)
++.+..+++++|+|+.+|+|...|..|..++....|.++++.++||.++|..+++++..++..
T Consensus 353 ~~~~~~g~li~VfG~gGDrD~~kr~~mg~ia~~~ad~vivt~dnpR~edp~~i~~~i~~g~~~----------------- 415 (475)
T COG0769 353 VRLHAAGRLIVVFGCGGDRDKSKRPDMGAIAEQLADIVIVTSDNPRSEDPAVILADILAGIEA----------------- 415 (475)
T ss_pred HHhhcCCcEEEEECccCCCCcccccchHHHHHhcCCcEEEcCCCCCCcCHHHHHHHHHhccCC-----------------
Confidence 997666889999999999999999999999999999999999999999999999988776531
Q ss_pred CCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHh
Q 041678 320 PNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQY 380 (402)
Q Consensus 320 ~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (402)
...+.+..++++|++++.++++++|+|++.|+|++.++.+.+.+.+|++++..++++..
T Consensus 416 --~~~~~~~~dr~~AI~~ai~~a~~~D~vliagkGhe~yq~~~~~~~~f~d~~~v~~~l~~ 474 (475)
T COG0769 416 --PEKYEIIEDREEAIRKALDLAKEGDVVLIAGKGHETYQIMLELKRPFDDREVVREALLE 474 (475)
T ss_pred --ccceecchhHHHHHHHHHHhhccCCEEEEeeccchhhhhhhceEEecCcHHHHHHHHhh
Confidence 11245667899999999999999999999999999999999999999999999998754
No 3
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=1.1e-49 Score=430.29 Aligned_cols=357 Identities=42% Similarity=0.668 Sum_probs=296.0
Q ss_pred CCCceEEEeccceEeCCceecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchh
Q 041678 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM 80 (402)
Q Consensus 1 ~g~~~g~~~t~g~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl 80 (402)
+|.++|+.||.|..+++ ...+.+.|+|+.++++++|..+.+.++|++|+|+|++++...+...++|+++|||||++||+
T Consensus 137 ~g~~~~~~g~~~~~i~~-~~i~~~~t~~~~~~~~~~l~~~~~~~~~~~VlE~ss~~l~~~rl~~~~p~iaviTnI~~dHl 215 (958)
T PRK11929 137 LGKPCGSIGTLGARLDG-RLIPGSLTTPDAIILHRILARMRAAGADAVAMEASSHGLEQGRLDGLRIAVAGFTNLTRDHL 215 (958)
T ss_pred cCCCEEEECCccccCCC-eeeecCCCCCCHHHHHHHHHHHHHCCCCEEEEEeccchHhhCcccccccCEEEEeCCCcccc
Confidence 47899999999998765 44567789999999999988888899999999999877633445557999999999999999
Q ss_pred ccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEc
Q 041678 81 DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNT 160 (402)
Q Consensus 81 ~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
++|||+|+|+++|++||+.+ ++++.+|+|.||+....+.........+.+++. ...+++....+.....+..|.+..
T Consensus 216 ~~~gt~e~i~~~K~~i~~~~--~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~ 292 (958)
T PRK11929 216 DYHGTMQDYEEAKAALFSKL--PGLGAAVINADDPAAARLLAALPRGLKVGYSPQ-NAGADVQARDLRATAHGQVFTLAT 292 (958)
T ss_pred ccCCCHHHHHHHHHHHhcCC--ccCCeEEEECCCHHHHHHHHHcCCCceEEEEee-CCCccEEEEEEEEcCCceEEEEEe
Confidence 99999999999999999876 567899999999988877654322224455553 223566655554444455676665
Q ss_pred CCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeee---cCCCeEEEEECCCCHHHHHHHH
Q 041678 161 PHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELID---EEQAFGVIVDYAHTPDALSRLL 237 (402)
Q Consensus 161 ~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~---~~~g~~vi~D~ahnp~s~~~~l 237 (402)
.++.+.+.+|++|.||++|+++|++++..+|++.+.|+++|.+|++++||||++. ..+++.+|+||||||+|+++++
T Consensus 293 ~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~I~~~L~~~~~~~gR~e~i~~~~~~~~~~vi~DyahnP~s~~a~l 372 (958)
T PRK11929 293 PDGSYQLVTRLLGRFNVSNLLLVAAALKKLGLPLAQIARALAAVSPVPGRMERVGPTAGAQGPLVVVDYAHTPDALAKAL 372 (958)
T ss_pred CCceEEEEecCccHhhHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCCCCcEEeccccCCCCCEEEEECCCCHHHHHHHH
Confidence 5555678899999999999999999999999999999999999999999999994 3457889999999999999999
Q ss_pred HHHhhhC---CCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCC
Q 041678 238 DSVRELA---PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314 (402)
Q Consensus 238 ~~l~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 314 (402)
++++... .+|+++|+|++++++..+++++..+....+|.++++.+++|.++|.++.+.+..++..
T Consensus 373 ~~l~~~~~~~~~r~i~V~g~g~~r~~~~~~~~~~~~~~~~d~vi~t~~~pr~e~p~~i~~~i~~~~~~------------ 440 (958)
T PRK11929 373 TALRPVAQARNGRLVCVFGCGGDRDKGKRPEMGRIAAELADRVVVTSDNPRSEAPEAIIDQILAGIPA------------ 440 (958)
T ss_pred HHHHHhcccCCCcEEEEECCCCCCCcchhHHHHHHHHHhCCEEEEcCCCCCCCCHHHHHHHHHhhccC------------
Confidence 9998542 3678999999999999888999988777889999999999999998887655433210
Q ss_pred CCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHh
Q 041678 315 YYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQY 380 (402)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (402)
...+...+++++|++.+.+.+++||+||++|||++.|+.+++.+.+|++++..+++++.
T Consensus 441 -------~~~~~~~~d~~~Ai~~a~~~a~~gD~VLv~GsG~e~~~~~~~~~~~f~d~~~~~~~l~~ 499 (958)
T PRK11929 441 -------GARVFVISDRAEAIRQAIWMAAPGDVILIAGKGHETYQEIGGRKLFFDDREWARRALLA 499 (958)
T ss_pred -------CCceEEECCHHHHHHHHHHhcCCCCEEEEeecCcchheEECCEecCCCHHHHHHHHHHh
Confidence 01245667899999999999999999999999999999999999999999999999854
No 4
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=2.3e-48 Score=389.14 Aligned_cols=346 Identities=44% Similarity=0.709 Sum_probs=276.7
Q ss_pred CCCceEEEeccceEeCCceec--CCCCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcc
Q 041678 1 MGLRTGMLSSVSYYIHGDNKL--ESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78 (402)
Q Consensus 1 ~g~~~g~~~t~g~~~~~~~~~--~~~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~D 78 (402)
+|.+||+.+|.|.++++.... |...+||....+...+..+.+.++|++|+|+|+++........++|+++|||||++|
T Consensus 110 ~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~g~~~~~~~~l~~~~p~iaviTnI~~d 189 (464)
T TIGR01085 110 LGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHALAQGRVRGVRFDAAVFTNLSRD 189 (464)
T ss_pred cCCCEEEECccceeECCeeeecCcccCCCCCHHHHHHHHHHHHHCCCCEEEEEecHHHHhhCCccCceeCEEEEccCCCC
Confidence 477889999999987754443 445788998887777777778899999999997655223344489999999999999
Q ss_pred hhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccC-----CCCceEEeeEEeecCc
Q 041678 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMEN-----KKADVHPLKFELSLFE 153 (402)
Q Consensus 79 Hl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~ 153 (402)
|+++|||+|+|+++|++|++.+ +.++.+|+|.||+....+..... .. ++++... ..++++...+.....+
T Consensus 190 Hl~~~gs~e~i~~~K~~i~~~~--~~~g~~v~n~dd~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
T TIGR01085 190 HLDFHGTMENYFAAKASLFTEL--GLKRFAVINLDDEYGAQFVKRLP--KD-ITVSAITQPADGRAQDIKITDSGYSFEG 264 (464)
T ss_pred CCcccCCHHHHHHHHHHHhccc--cCCCeEEEEcCCHHHHHHHHhcC--CC-eEEEEecCCCccccccEEEEEEEEecCc
Confidence 9999999999999999999876 55678999999998877765431 12 2232211 1235554444433445
Q ss_pred eEEEEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcC-CCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHH
Q 041678 154 TQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVG-APLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDA 232 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lg-i~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s 232 (402)
..|.+...++...+.+|++|.||++|+++|++++..+| ++.+.|+++|.+|++++||||++...+++.+|+||||||+|
T Consensus 265 ~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lg~i~~e~i~~~L~~~~~~~gR~e~~~~~~g~~vi~Dy~~NP~s 344 (464)
T TIGR01085 265 QQFTFETPAGEGHLHTPLIGRFNVYNLLAALATLLHLGGIDLEDIVAALEKFRGVPGRMELVDGGQKFLVIVDYAHTPDA 344 (464)
T ss_pred eEEEEEeCCceEEEEecCccHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEECCCCHHH
Confidence 56666655555678899999999999999999999999 99999999999999999999999865678999999999999
Q ss_pred HHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCC
Q 041678 233 LSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGE 312 (402)
Q Consensus 233 ~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 312 (402)
|+++++++++.+++|+++|+|.+.+++..|+.++..+.....|.+++++++++++++..+...+..+...
T Consensus 345 ~~aal~~l~~~~~~r~i~VlGlg~~~~~~~~~~~~~~~~~~~d~vi~~g~~~~~~~~~~~~~~~~~~~~~---------- 414 (464)
T TIGR01085 345 LEKALRTLRKHKDGRLIVVFGCGGDRDRGKRPLMGAIAEQLADLVILTSDNPRGEDPEQIIADILAGISE---------- 414 (464)
T ss_pred HHHHHHHHHhhCCCcEEEEECCCCCCCcchhHHHHHHHHhcCCEEEEeCCCcCCCCHHHHHHHHHhcccC----------
Confidence 9999999987655689999998888888888888888777889999999988898887765443332210
Q ss_pred CCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCc
Q 041678 313 NDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDD 370 (402)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~ 370 (402)
...+..++++++|++.+.+.+++||+||++|+|+++|+.+.+.+.+|+|
T Consensus 415 ---------~~~~~~~~~~~~a~~~~~~~~~~~d~VLv~G~g~~~~~~~~~~~~~~~~ 463 (464)
T TIGR01085 415 ---------KEKVVIIADRRQAIRYAISNAKAGDVVLIAGKGHEDYQIIGGETIPFDD 463 (464)
T ss_pred ---------CCcEEEECCHHHHHHHHHHhcCCCCEEEEEEcCCcccEEECCEEeCCCC
Confidence 0113456789999999999999999999999999999999999888865
No 5
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=2.4e-47 Score=382.77 Aligned_cols=339 Identities=29% Similarity=0.458 Sum_probs=268.4
Q ss_pred CCCceEEEeccceEeCCceecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchh
Q 041678 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM 80 (402)
Q Consensus 1 ~g~~~g~~~t~g~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl 80 (402)
.|++++++||.|.++++ ...++..++|.+..++..+..+.+.+++++|+|+|++|...+++..++|+++|||||++||+
T Consensus 135 ~g~~~~~~g~~~~~ig~-~~~~~~~~~p~~~~l~~~~~~~~e~g~~~~v~EvsS~~~~~~r~~~~~pdiaViTNI~~DHl 213 (481)
T PRK14022 135 LHKPAMLSTMNTTLDGE-TFFKSALTTPESLDLFKMMAEAVDNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNITPDHI 213 (481)
T ss_pred CCCCEEEEeeeeeccCC-eeeeCCCCCchHHHHHHHHHHHHHCCCCEEEEEechhHHHhccccCccccEEEEcCCCcccC
Confidence 36788999999988654 45567788998888777777777889999999999987545667778999999999999999
Q ss_pred cc--CCCHHHHHHHHHHHhhhcCCCCCceEEEeCC-ChHHHHHHhccCCCCCEEEEeccCCCCceEEeeEEeecCceEEE
Q 041678 81 DF--HGTEEEYRNAKAKLFSRMVDPERHRKVVNID-DPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVL 157 (402)
Q Consensus 81 ~~--~gt~e~i~~~K~~i~~~~~~~~~~~~iln~d-d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (402)
++ |+|+|+|+.+|++|++. ++.+|+|.| ++.. .+.... ...++++|+... ..++.... .|.
T Consensus 214 d~L~~~t~e~~a~aK~~i~~~-----~~~~Vln~d~d~~~-~~~~~~-~~~~~~~~g~~~-~~~~~~~~--------~~~ 277 (481)
T PRK14022 214 GPIEHPTFEDYFYHKRLLMEN-----SKAVVVNSDMDHFS-ELLEQV-TPQEHDFYGIDS-ENQIMASN--------AFS 277 (481)
T ss_pred CCCCCCCHHHHHHHHHHHhcC-----CCEEEEEcCCCHHH-HHHHHh-cCCCEEEEecCC-ccceEEEE--------EEE
Confidence 99 88999999999999953 478999998 5543 333222 234678888632 22332211 233
Q ss_pred EEcCCe-eEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHH
Q 041678 158 VNTPHG-ILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236 (402)
Q Consensus 158 ~~~~~~-~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~ 236 (402)
+...+. ...+.++++|.||++|+++|++++..+|++.+.|+++|.+ ++++||||++...+++.+|+||||||+|++++
T Consensus 278 ~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~i~~~L~~-~~~~gR~e~i~~~~g~~vi~DyahNP~s~~aa 356 (481)
T PRK14022 278 FEATGKLAGTYDIQLIGKFNQENAMAAGLACLRLGASLEDIQKGIAQ-TPVPGRMEVLTQSNGAKVFIDYAHNGDSLNKL 356 (481)
T ss_pred EEEcccCCceEEEEEechhhHHHHHHHHHHHHHcCCCHHHHHHHhcc-CCCCCCeEEEECCCCCEEEEECCCCHHHHHHH
Confidence 322111 1135567999999999999999999999999999999999 89999999998656788999999999999999
Q ss_pred HHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCE-EEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCC
Q 041678 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDV-TILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDY 315 (402)
Q Consensus 237 l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~-vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 315 (402)
++++++..++|+++|+|++++++...+..+.+++....+. ++++++++|++++..+.+.+..+..
T Consensus 357 l~~l~~~~~~r~i~V~G~~~e~g~~~~~~~~~~~~~~~~~~vi~~~~~~r~e~~~~i~~~i~~~~~-------------- 422 (481)
T PRK14022 357 IDVVEEHQKGKLILLLGAAGNKGESRRPDFGRVANRHPYLQVILTADDPNNEDPKMITQEIASHIT-------------- 422 (481)
T ss_pred HHHHhhhCCCCEEEEECCCCCCCcchhHHHHHHHHhcCCceEEEccCCCCCCCHHHHHHHHHhcCC--------------
Confidence 9999876557899999999998876555566666555553 7788889999999887765432211
Q ss_pred CCCCCCCCceeecccHHHHHHHHHHhCC-CCcEEEEecCCCcceEEeCCEeeec-CcHHHHHHHH
Q 041678 316 YPPLPNGHRLFLHDIRRVAVRCAVAMGE-EGDMVVVAGKGHETYQIEGDKKEFF-DDREESREAL 378 (402)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~a~~~a~~~~~-~gD~VLv~Gsg~~~~~~~~~~~~~~-~~~~~~~~~~ 378 (402)
..+..++++++|++.+.+.++ +||+||++|.|++.++++++.+.+| ++++.+++++
T Consensus 423 -------~~~~~~~d~~~Ai~~a~~~a~~~gD~VLi~G~G~~~~~~~~~~~~~~~~d~~~~~~~l 480 (481)
T PRK14022 423 -------HPVEIIDDRAEAIKHAMSITEGPGDAVIIAGKGADAYQIVPGHRDDYIGDEAAAKKYL 480 (481)
T ss_pred -------CCeEEECCHHHHHHHHHHhcCCCCCEEEEEecCCcceEEECCEEecCCCHHHHHHHHh
Confidence 113456789999999999999 9999999999999999999999999 8999999886
No 6
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=3.9e-47 Score=372.94 Aligned_cols=319 Identities=20% Similarity=0.281 Sum_probs=244.3
Q ss_pred CCCceEEEeccce-------EeCCceecC---------------CCCCCCCHHHHHHHH--HHHHHCCCCEEEEecccCC
Q 041678 1 MGLRTGMLSSVSY-------YIHGDNKLE---------------SPRTTPDAVMVQNLM--AKMLHNGTEAVVMEASSHG 56 (402)
Q Consensus 1 ~g~~~g~~~t~g~-------~~~~~~~~~---------------~~~~~p~~~~~~~~l--~~~~~~~~d~~VlE~g~~g 56 (402)
+|.+||+.+|-+. +++++.+.+ ....+|++||+.+++ ..|.+.++|++|+|+|++|
T Consensus 43 ~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlgg 122 (397)
T TIGR01499 43 AGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPILEKLSQQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGG 122 (397)
T ss_pred cCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCC
Confidence 4899999999986 677654322 111289999999985 5788999999999999999
Q ss_pred cccCCccccccCEEEEeCCCcchhccCC-CHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhc-c-CCCCCEEEE
Q 041678 57 LALGRCSEVDFDIAVFTNLTRDHMDFHG-TEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ-G-NPDVPVVTF 133 (402)
Q Consensus 57 ~~~d~~~~~~p~iaViTnI~~DHl~~~g-t~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~-~-~~~~~v~~~ 133 (402)
+ .|.+++++|+++|||||+.||+++|| |+|+|+.+|++||+. +..+|+|.|++....++.. + ..+++++++
T Consensus 123 r-ld~tn~i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~I~k~-----~~~~v~~~d~~~~~~~~~~~a~~~~~~~~~~ 196 (397)
T TIGR01499 123 R-LDATNVIEPLVSVITSIGLDHTEILGDTLEEIAWEKAGIIKE-----GVPIVTGPQEPEALNVLKKKAQEKGAPLFVV 196 (397)
T ss_pred C-cccccccCCCeEEEccccHHHHHHhCccHHHHHHHHhCccCC-----CCCEEEcCCChHHHHHHHHHHHHcCCCEEEe
Confidence 9 79999999999999999999999999 999999999999963 4678999998877665432 1 124566666
Q ss_pred eccCCCCceEEeeEEeecCceEEEEEcCCee-EEEEeCCCchHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhcCCCC
Q 041678 134 AMENKKADVHPLKFELSLFETQVLVNTPHGI-LEISSGLLGRHNIYNILAAVAVGIAVGA-----PLEDIVRGIEEVDAV 207 (402)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~G~hn~~Na~aA~a~a~~lgi-----~~~~i~~~L~~~~~~ 207 (402)
+. ++..... .+..|.+....+. ..+.++++|.||++|+++|++++..+|. +.+.|+++|+++ .|
T Consensus 197 ~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~~~Aiaa~~~lg~~~~~i~~~~i~~~L~~~-~~ 266 (397)
T TIGR01499 197 GR-----DFNYSET----DENYLSFSGANLFLEPLALSLLGDHQAENAALALAALEVLGKQRPKLSEEAIRKGLANT-IW 266 (397)
T ss_pred cc-----ceeeccc----ccceEEeecccccccccCCCCCCHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhC-CC
Confidence 53 1211110 1123433322111 2456799999999999999999999885 589999999999 59
Q ss_pred CCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhhCC-CcEEEEEccCCCCCCCChHHHHHHHhhcC-CEEEEccCCCC
Q 041678 208 PGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP-RRIITVVGCAGESDRGKRPLMTKIATDKS-DVTILTSDNPM 285 (402)
Q Consensus 208 ~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~~-~~~i~V~g~~~~~~~~~~~~~~~~~~~~~-d~vi~~~~~~~ 285 (402)
|||||++... ++.+|+|+||||+|+++++++++...+ +++++|+|+++|||.. .+...+..... |+++++.++||
T Consensus 267 pGR~e~i~~~-~~~viiD~AHNp~a~~~~l~~l~~~~~~~~i~~V~G~~~dkd~~--~~~~~l~~~~~~d~~~~~~~~~r 343 (397)
T TIGR01499 267 PGRLEILSED-NPNILLDGAHNPHSAEALAEWFKKRFNGRPIILLFGALADKDAA--AMLAPLKPVVDKEVFVTPFDYPR 343 (397)
T ss_pred CceEEEEecC-CCEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCCHH--HHHHHHhhccCcEEEEECCCCCC
Confidence 9999999753 688999999999999999999987544 4788999999888764 33333333222 36677778999
Q ss_pred CCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEe
Q 041678 286 NEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKK 365 (402)
Q Consensus 286 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~ 365 (402)
.+++.++.+.+..+. +...+++.+|++.+. .++++|+||++|| ||++++++
T Consensus 344 ~~~~~~i~~~~~~~~------------------------~~~~~~~~~ai~~a~-~~~~~d~vlv~GS----lyl~~~~~ 394 (397)
T TIGR01499 344 ADDAADLAALAETFG------------------------KETVEDWREALALAL-NASAEDDILVTGS----LYLVGEVR 394 (397)
T ss_pred CCCHHHHHHHHHHcC------------------------ceecCCHHHHHHHHH-hCCCCCEEEEEcc----HHHHHHHH
Confidence 999998876543210 234577899999888 7788999999999 99988776
Q ss_pred ee
Q 041678 366 EF 367 (402)
Q Consensus 366 ~~ 367 (402)
++
T Consensus 395 ~~ 396 (397)
T TIGR01499 395 KL 396 (397)
T ss_pred Hh
Confidence 54
No 7
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=2e-43 Score=348.66 Aligned_cols=316 Identities=26% Similarity=0.361 Sum_probs=235.8
Q ss_pred CceEEEeccceEeCCce----ecCC--CCCCCCHHHH--HHHHH-HHHHCCCCEEEEecccCCcc--cCCccccccCEEE
Q 041678 3 LRTGMLSSVSYYIHGDN----KLES--PRTTPDAVMV--QNLMA-KMLHNGTEAVVMEASSHGLA--LGRCSEVDFDIAV 71 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~~----~~~~--~~~~p~~~~~--~~~l~-~~~~~~~d~~VlE~g~~g~~--~d~~~~~~p~iaV 71 (402)
+.+|+|||.|......- +... ...++..+.. ...+. .+.+.++|++|+|+|+++.+ ..++..++|+++|
T Consensus 75 ~vI~VTGTnGKTTt~~ll~~iL~~~g~~~~t~gn~n~~ig~p~~~l~~~~~~~~~VlE~g~s~~g~~~~~~~~~~p~vav 154 (417)
T TIGR01143 75 KVIGITGSSGKTTTKEMLAAILSHKYKVFATPGNFNNEIGLPLTLLRAPGDHDYAVLEMGASHPGEIAYLAEIAKPDIAV 154 (417)
T ss_pred CEEEEcCCCchhHHHHHHHHHHhccCcEecCCCcCCCccchhHHHhcCCCCCeEEEEEeCCCCCCcHHHHhCccCCCEEE
Confidence 46899999998743211 1110 1223333221 11111 23467899999999876553 3468889999999
Q ss_pred EeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeEEeec
Q 041678 72 FTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSL 151 (402)
Q Consensus 72 iTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 151 (402)
||||++||+++|||+|+|+++|++||+.+ ++++.+|+|.||+....+.... ...++++|+..+ ++++...+....
T Consensus 155 iTNi~~dHld~~gs~e~~~~aK~~l~~~~--~~~~~~vln~Dd~~~~~~~~~~-~~~~~~~~g~~~--~~~~~~~i~~~~ 229 (417)
T TIGR01143 155 ITNIGPAHLEGFGSLEGIAEAKGEILQGL--KENGIAVINADDPAFAKFAKRL-PNKAILSFGFEG--GDFSAADISYSA 229 (417)
T ss_pred EcCCcHHHhhhcCCHHHHHHHHHHHHccc--CCCCEEEEeCCcHHHHHHHHhc-cCCcEEEECCCC--CcEEEEEEEEcC
Confidence 99999999999999999999999999876 5678999999999887776543 235688998632 566655554444
Q ss_pred Cc-eEEEEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEE-CCCC
Q 041678 152 FE-TQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHT 229 (402)
Q Consensus 152 ~~-~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahn 229 (402)
.+ ..|.+..+++.++++++++|.||++|+++|++++..+|++++.|.++|.+|++++|||| +...+++++|+| ||||
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~G~hn~~N~laAia~~~~lGi~~~~i~~~l~~~~~~~gR~e-~~~~~~~~vidDsya~n 308 (417)
T TIGR01143 230 LGSTGFTLVAPGGEFEVSLPLLGRHNVMNALAAAALALELGIPLEEIAEGLAELKLVKGRFE-IQTKNGLTLIDDTYNAN 308 (417)
T ss_pred CCCEEEEEEeCCceEEEEccCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcee-EEcCCCcEEEEcCCCCC
Confidence 44 56766655556778899999999999999999999999999999999999999999999 554578999999 8999
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEccC---CCCCCCChHHHHHHHhh-cCCEEEEccCCCCCCCHHHHHHHHHhcccchhh
Q 041678 230 PDALSRLLDSVRELAPRRIITVVGCA---GESDRGKRPLMTKIATD-KSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305 (402)
Q Consensus 230 p~s~~~~l~~l~~~~~~~~i~V~g~~---~~~~~~~~~~~~~~~~~-~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~ 305 (402)
|+|++++++++++.. +|+++|+|++ ++++...+..+.+.+.. ..|.++++++++ ..+.+. +.
T Consensus 309 p~s~~~al~~l~~~~-~r~i~VlG~~~e~G~~~~~~~~~l~~~~~~~~~d~vi~~g~~~-----~~~~~~----~~---- 374 (417)
T TIGR01143 309 PDSMRAALDALARFP-GKKILVLGDMAELGEYSEELHAEVGRYANSLGIDLVFLVGEEA-----AVIYDS----LG---- 374 (417)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEEcCchhcChHHHHHHHHHHHHHHHcCCCEEEEECHHH-----HHHHHh----cc----
Confidence 999999999998765 6889999988 44444334556666644 459999987653 222111 10
Q ss_pred hhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCC
Q 041678 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355 (402)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~ 355 (402)
....++++.+++.+.+.+.+++||+||++||+.
T Consensus 375 -----------------~~~~~~~~~~~~~~~l~~~~~~~d~VLlkGSr~ 407 (417)
T TIGR01143 375 -----------------CKGFHFADKDELLAFLKLELGEGDVVLVKGSRS 407 (417)
T ss_pred -----------------cCcEEECCHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 012345678889999988899999999999954
No 8
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=5.3e-42 Score=337.86 Aligned_cols=312 Identities=23% Similarity=0.263 Sum_probs=228.6
Q ss_pred CCCceEEEecc-------ceEeCCceecCCC-------------CCCCCHHHHHHHHH--HHHHCCCCEEEEecccCCcc
Q 041678 1 MGLRTGMLSSV-------SYYIHGDNKLESP-------------RTTPDAVMVQNLMA--KMLHNGTEAVVMEASSHGLA 58 (402)
Q Consensus 1 ~g~~~g~~~t~-------g~~~~~~~~~~~~-------------~~~p~~~~~~~~l~--~~~~~~~d~~VlE~g~~g~~ 58 (402)
+|.+||+.+|- +++++++.+.+.. ...|+.||+.+.++ +|.+.++|++|+|+|++|+
T Consensus 74 ~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggr- 152 (416)
T PRK10846 74 AGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGR- 152 (416)
T ss_pred cCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCC-
Confidence 58999999987 8888876543221 23688999888755 6788999999999999999
Q ss_pred cCCccccccCEEEEeCCCcchhccCC-CHHHHHHHHHHHhhhcCCCCCceEEEeCCC-hH-HHHHHhccCCCCCEEEEec
Q 041678 59 LGRCSEVDFDIAVFTNLTRDHMDFHG-TEEEYRNAKAKLFSRMVDPERHRKVVNIDD-PN-ATSFIAQGNPDVPVVTFAM 135 (402)
Q Consensus 59 ~d~~~~~~p~iaViTnI~~DHl~~~g-t~e~i~~~K~~i~~~~~~~~~~~~iln~dd-~~-~~~~~~~~~~~~~v~~~~~ 135 (402)
.|.++.++|+++|||||++||+++|| |+|+|+.+|++|++. ++.+|+|.++ +. ...+... .+++++.++.
T Consensus 153 ld~tn~i~p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Iik~-----~~~~V~~~~d~~~~~~~~a~~--~~~~~~~~~~ 225 (416)
T PRK10846 153 LDATNIVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRA-----EKPAVVGEPDMPSTIADVAQE--KGALLQRRGV 225 (416)
T ss_pred chhhhccCCCEEEECCccHHHHHHhcCCHHHHHHHHHhhhcC-----CCeEEECCccHhHHHHHHHHH--hCCcEEEecc
Confidence 89999999999999999999999999 899999999999964 4678888766 33 2223322 2445554432
Q ss_pred cCCCCceEEeeEEeecCceEEEEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHH--cCCCHHHHHHHhhcCCCCCCceee
Q 041678 136 ENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIA--VGAPLEDIVRGIEEVDAVPGRCEL 213 (402)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~--lgi~~~~i~~~L~~~~~~~gR~e~ 213 (402)
++... ..+..+.+...... ...++++ .||++|+++|++++.. ++++.+.|+++|++++ ||||||+
T Consensus 226 -----~~~~~-----~~~~~~~~~~~~~~-~~~~~l~-~~~~~N~~~Aia~~~~~~~~i~~~~i~~~L~~~~-~~gR~e~ 292 (416)
T PRK10846 226 -----DWNYS-----VTDHDWAFSDGDGT-LENLPLP-NVPLPNAATALAALRASGLEVSEQAIRDGIASAI-LPGRFQI 292 (416)
T ss_pred -----eeeee-----ccCceEEEecCccc-cccCCcc-chHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC-CCceEEE
Confidence 11110 00111222211111 1124555 4799999999999865 5699999999999995 9999999
Q ss_pred eecCCCeEEEEECCCCHHHHHHHHHHHhhhC-CCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEc-cCCCCCCCHHH
Q 041678 214 IDEEQAFGVIVDYAHTPDALSRLLDSVRELA-PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILT-SDNPMNEDPLD 291 (402)
Q Consensus 214 i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~-~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~-~~~~~~~~~~~ 291 (402)
+... +.+|+||||||+|++++++.+++.. .+++++|+|.+++|+.. ..+..+. ...|.++++ ...+++.++.+
T Consensus 293 ~~~~--~~iI~D~AHNp~a~~~l~~~L~~~~~~~~ii~Vfg~~gdkd~~--~~l~~L~-~~~d~viv~~~~~~r~~~~~~ 367 (416)
T PRK10846 293 VSES--PRVILDVAHNPHAAEYLTGRLKALPKNGRVLAVIGMLHDKDIA--GTLACLK-SVVDDWYCAPLEGPRGATAEQ 367 (416)
T ss_pred EcCC--CcEEEECCCCHHHHHHHHHHHHHhcCCCCEEEEEEeeCCCCHH--HHHHHHh-hhCCEEEEECCCCCCCCCHHH
Confidence 9853 4699999999999999999988754 35899999999888764 3344443 345666444 45679988877
Q ss_pred HHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeec
Q 041678 292 ILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFF 368 (402)
Q Consensus 292 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~ 368 (402)
+.+.+.. ...++++++|++.+.+.+++||+||+||| +|+++++++++
T Consensus 368 l~~~~~~--------------------------~~~~~~~~~Ai~~a~~~a~~gD~VLi~GS----~~~~~~~~~~~ 414 (416)
T PRK10846 368 LAEHLGN--------------------------GKSFDSVAQAWDAAMADAKPEDTVLVCGS----FHTVAHVMEVI 414 (416)
T ss_pred HHHHhhh--------------------------CcccCCHHHHHHHHHHhcCCCCEEEEECc----HHHHHHHHHhh
Confidence 6553211 12346789999999999999999999999 88887776544
No 9
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=6e-42 Score=341.09 Aligned_cols=316 Identities=20% Similarity=0.227 Sum_probs=236.2
Q ss_pred CceEEEeccceEeCCce----ecC--CCCCCCCHHHHHH--HHHH-HHHCCCCEEEEecccCCcc--cCCccccccCEEE
Q 041678 3 LRTGMLSSVSYYIHGDN----KLE--SPRTTPDAVMVQN--LMAK-MLHNGTEAVVMEASSHGLA--LGRCSEVDFDIAV 71 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~~----~~~--~~~~~p~~~~~~~--~l~~-~~~~~~d~~VlE~g~~g~~--~d~~~~~~p~iaV 71 (402)
+.+|+|||.|......- +.. ....++..+.... .+.. ....++|++|+|+|+...+ ..++..++|+++|
T Consensus 101 ~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~t~gn~n~~~G~~~~~~~~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaV 180 (453)
T PRK10773 101 RVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNNDIGVPLTLLRLTPEHDYAVIELGANHQGEIAYTVSLTRPEAAL 180 (453)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHhcCcccccCccccCCcccccHHhcCCCCCcEEEEEcCCCCcchhHHhcCccCCCEEE
Confidence 57899999998743321 111 1123444322111 1111 1246799999999986553 3467889999999
Q ss_pred EeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccC-CCCceEEeeEEee
Q 041678 72 FTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMEN-KKADVHPLKFELS 150 (402)
Q Consensus 72 iTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~ 150 (402)
||||++||+++|||+|+|+++|++||+.+ ++++.+|+|.||+....+.... ...++++|+... ..++++...+...
T Consensus 181 iTNI~~dHld~~gs~e~~~~aK~~l~~~~--~~~g~~vln~Dd~~~~~~~~~~-~~~~~~~~g~~~~~~~d~~~~~i~~~ 257 (453)
T PRK10773 181 VNNLAAAHLEGFGSLAGVAKAKGEIFSGL--PENGIAIMNADSNDWLNWQSVI-GSKTVWRFSPNAANSVDFTATNIHVT 257 (453)
T ss_pred EeCCCHHHHhhcCCHHHHHHHHHHHHccc--CCCCEEEEECCcHhHHHHHHHh-cCCcEEEEeCCCCCcCcEEEEEEEEe
Confidence 99999999999999999999999999877 5678999999999877665443 223578888633 2357776666555
Q ss_pred cCceEEEEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEE-CCCC
Q 041678 151 LFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHT 229 (402)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahn 229 (402)
..+..|.+....+.+++.+|++|.||++|+++|++++..+|++.+.|+++|++|++++||||.+...+++++|+| ||||
T Consensus 258 ~~~~~f~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~~L~~~~~~~gR~e~v~~~~g~~iIDDsYn~n 337 (453)
T PRK10773 258 SHGTEFTLHTPTGSVDVLLPLPGRHNIANALAAAALAMSVGATLDAVKAGLANLKAVPGRLFPIQLAEGQLLLDDSYNAN 337 (453)
T ss_pred CCeeEEEEEecCceEEEEecCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceeEEECCCCeEEEEcCCCCC
Confidence 556677776555556789999999999999999999999999999999999999999999999976567899999 8999
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEccCCCCCCC----ChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhh
Q 041678 230 PDALSRLLDSVRELAPRRIITVVGCAGESDRG----KRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305 (402)
Q Consensus 230 p~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~----~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~ 305 (402)
|+|+++++++++++ ++++++|+|.|.+.+.. |+++...+....+|.+++.++..+ .+.+ ..+
T Consensus 338 P~s~~aaL~~l~~~-~~r~i~VlG~m~elG~~~~~~h~~~~~~~~~~~~d~v~~~G~~~~-----~~~~----~~~---- 403 (453)
T PRK10773 338 VGSMTAAAQVLAEM-PGYRVMVVGDMAELGAESEACHRQVGEAAKAAGIDKVLSVGKLSH-----AISE----ASG---- 403 (453)
T ss_pred HHHHHHHHHHHHhC-CCCEEEEECChhhcchHHHHHHHHHHHHHHHcCCCEEEEEChhHH-----HHHH----hcC----
Confidence 99999999999986 45789999998886543 344444445557899988864321 1111 000
Q ss_pred hhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCc--EEEEecC
Q 041678 306 EYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGD--MVVVAGK 353 (402)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD--~VLv~Gs 353 (402)
. -.++++.+++.+.+...+++|| +||++||
T Consensus 404 -----------------~-~~~~~~~~~~~~~l~~~~~~gd~~~vL~Kgs 435 (453)
T PRK10773 404 -----------------V-GEHFADKTALIARLKALLAEHQVITILVKGS 435 (453)
T ss_pred -----------------C-CeeECCHHHHHHHHHHhhcCCCceEEEEEeC
Confidence 0 0235778889999999999999 5999999
No 10
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.4e-41 Score=338.78 Aligned_cols=330 Identities=19% Similarity=0.269 Sum_probs=237.4
Q ss_pred CceEEEeccceEeCCce----ecCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCC
Q 041678 3 LRTGMLSSVSYYIHGDN----KLESPRT--TPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLT 76 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~~----~~~~~~~--~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~ 76 (402)
+.+|+|||.|......- +.....+ .... +...+......+.|++|+|+|++++ +.++.++|+++|||||+
T Consensus 109 ~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggn--ig~p~~~~~~~~~~~~V~E~ss~~l--~~~~~~~P~iaVITNI~ 184 (448)
T PRK03803 109 PVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGN--IGTPALDLLSDDPELYVLELSSFQL--ETTHSLNAEVATVLNIS 184 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecC--cCHHHHHHhcCCCCEEEEEcChhhh--CcCcccCccEEEEecCC
Confidence 56899999998743210 1111111 1111 1111112224467999999999987 57889999999999999
Q ss_pred cchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCC-CceEEeeEEeecCceE
Q 041678 77 RDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKK-ADVHPLKFELSLFETQ 155 (402)
Q Consensus 77 ~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~ 155 (402)
+||+++|||+|+|+++|++|++. .+.+|+|.||+....+... ..++++|+..... .++.. .. ..+..
T Consensus 185 ~DHld~~gs~e~~~~~K~~i~~~-----~~~~V~n~dd~~~~~~~~~---~~~~~~~g~~~~~~~~~~~---~~-~~~~~ 252 (448)
T PRK03803 185 EDHMDRYSDLEAYHQAKHRIYRG-----AKQVVFNRDDALTRPLVPD---NQPCLSFGLNAPDFDEWGL---RE-GDGET 252 (448)
T ss_pred hhHcccCCCHHHHHHHHHHHHhC-----CCeEEEeCCCHHHHHHhhc---CCcEEEEeCCCCCcCceEE---Ee-cCCeE
Confidence 99999999999999999999974 3688999999988776542 3568888863211 12211 11 12222
Q ss_pred EEEEcCCeeE-EEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEEC-CCCHHHH
Q 041678 156 VLVNTPHGIL-EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDY-AHTPDAL 233 (402)
Q Consensus 156 ~~~~~~~~~~-~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~-ahnp~s~ 233 (402)
|.+......+ .+.++++|.||++|+++|++++..+|++++.|+++|.+|++++||||++...+|+.+|+|| +|||+|+
T Consensus 253 ~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~~~gv~~idDs~atN~~a~ 332 (448)
T PRK03803 253 YLAHGFERLMPVRELKLRGSHNLANALAALALGEAAGLPKEAMLEVLRTFTGLPHRCEWVREVAGVDYYNDSKGTNVGAT 332 (448)
T ss_pred EEEeCCceEEehhccCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEeCCeEEEEcCCcCCHHHH
Confidence 3332111112 2568999999999999999999999999999999999999999999999876788999995 9999999
Q ss_pred HHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCC
Q 041678 234 SRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEN 313 (402)
Q Consensus 234 ~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 313 (402)
.++++.+++.+++++++|+|++. ++...+++... .....+.+++++.. ...+.+.+ ...
T Consensus 333 ~~al~~l~~~~~~~iilI~Gg~~-k~~d~~~l~~~-l~~~~~~vil~G~~-----~~~i~~~l-~~~------------- 391 (448)
T PRK03803 333 VAAIEGLGAHIQGKLVLIAGGDG-KGADFSPLREP-VAKYVRAVVLIGRD-----ADKIAAAL-GGA------------- 391 (448)
T ss_pred HHHHHhhhhcCCCCEEEEECCCC-CCCCHHHHHHH-HHhhCCEEEEECCC-----HHHHHHHH-hcC-------------
Confidence 99999997644457899999753 45555554443 44567888887543 23332211 100
Q ss_pred CCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHhhH
Q 041678 314 DYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVD 382 (402)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (402)
..+..++++++|++.+.+.+++||+||++ ++|.||++ +++|.+|++.|+++++++.
T Consensus 392 ---------~~~~~~~~~~~a~~~a~~~a~~gdvVL~S-Pa~aSfd~---f~~~~~RG~~F~~~v~~~~ 447 (448)
T PRK03803 392 ---------VPLVRVATLAEAVAKAAELAQAGDIVLLS-PACASLDM---FKNFEARGDDFRQAVEALA 447 (448)
T ss_pred ---------CCEEEeCCHHHHHHHHHHhCCCCCEEEeC-chhhcccc---cCCHHHHHHHHHHHHHHhh
Confidence 01345678999999999999999999986 46778999 7888999999999998754
No 11
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.4e-42 Score=333.65 Aligned_cols=318 Identities=23% Similarity=0.288 Sum_probs=258.9
Q ss_pred CceEEEeccceEeCCce----ecC--CCCCCCCHHHHHHHHH--H-HHHCCCCEEEEecccCCcc--cCCccccccCEEE
Q 041678 3 LRTGMLSSVSYYIHGDN----KLE--SPRTTPDAVMVQNLMA--K-MLHNGTEAVVMEASSHGLA--LGRCSEVDFDIAV 71 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~~----~~~--~~~~~p~~~~~~~~l~--~-~~~~~~d~~VlE~g~~g~~--~d~~~~~~p~iaV 71 (402)
+.+|+|||.|.....+- +.+ ....||.+|+..-.+- . ....++|++|+|+|+.+.+ ...+.+++|+++|
T Consensus 104 kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iav 183 (451)
T COG0770 104 KVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRLPADTEYAVLEMGMNHPGEIAELSEIARPDIAV 183 (451)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhhcCeEecCCCccCccccchhHHHhCCCcccEEEEEcCCCCCCcHHHHhcccCCCEEE
Confidence 56899999998854321 111 2446788877555432 2 2246799999999999987 5578888999999
Q ss_pred EeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeEEeec
Q 041678 72 FTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSL 151 (402)
Q Consensus 72 iTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 151 (402)
||||+.+|++++||+|.|+++|++|+.++ ++++++|+|.|++......... ...++++|+.+ ...+++...++...
T Consensus 184 ItnIg~aHle~fgs~e~Ia~aK~Ei~~~~--~~~g~ai~n~d~~~~~~~~~~~-~~~~v~~fg~~-~~~d~~~~~i~~~~ 259 (451)
T COG0770 184 ITNIGEAHLEGFGSREGIAEAKAEILAGL--RPEGIAILNADNPLLKNWAAKI-GNAKVLSFGLN-NGGDFRATNIHLDE 259 (451)
T ss_pred EcChhHHHHHhcCCHHHHHHHHHHHHhcc--CCCcEEEEECccHHHHHHHhhc-CCCcEEEEcCC-CCCceeeEEEEEcC
Confidence 99999999999999999999999999998 7789999999999866665543 35789999974 45688888888888
Q ss_pred CceEEEEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEE-CCCCH
Q 041678 152 FETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTP 230 (402)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp 230 (402)
.+..|.+...+..+.+.+|++|+||+.|+++|+++|+.+|++.++|+++|..+++++||+|.+...+|.++|+| ||.||
T Consensus 260 ~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~a~a~~lG~~~e~i~~~L~~~~~~~gR~~~~~~~~g~~iIdD~YNAnp 339 (451)
T COG0770 260 EGSSFTLDIEGGEAEFELPLPGRHNVTNALAAAALALELGLDLEEIAAGLKELKPVKGRLEVILLANGKTLIDDSYNANP 339 (451)
T ss_pred CceEEEEEecCceEEEEecCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCccceeEecCCCcEEEEcCCCCCH
Confidence 88999999888888999999999999999999999999999999999999999999999996666678899999 89999
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEccCCCCCC----CChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhh
Q 041678 231 DALSRLLDSVRELAPRRIITVVGCAGESDR----GKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQE 306 (402)
Q Consensus 231 ~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~----~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 306 (402)
+||+++++.+..++.++.++|+|.|.+-.. .|.++...+.....|.+++.++.. ..+.+ ...
T Consensus 340 ~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~v~~~G~~~-----~~i~~----~~~----- 405 (451)
T COG0770 340 DSMRAALDLLAALPGRKGIAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLVGELS-----KAIAE----ALG----- 405 (451)
T ss_pred HHHHHHHHHHhhCccCCcEEEeCChhhhCccHHHHHHHHHHHHHhcCceEEEEEccch-----HHHHH----hcC-----
Confidence 999999999998876555999999988653 355666666666789999988732 22222 111
Q ss_pred hhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCC
Q 041678 307 YLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354 (402)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg 354 (402)
....++.+.++.++.+....++||+||++||.
T Consensus 406 ----------------~~~~~f~~~~~l~~~l~~~l~~gd~vLvKgSr 437 (451)
T COG0770 406 ----------------NKGIYFADKEELITSLKALLRKGDVVLVKGSR 437 (451)
T ss_pred ----------------CCeEecCCHHHHHHHHHHhcCCCCEEEEEcCc
Confidence 11456677778889999999999999999993
No 12
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5e-42 Score=331.12 Aligned_cols=322 Identities=24% Similarity=0.305 Sum_probs=238.4
Q ss_pred CceEEEeccceEeCCc-----------eecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEE
Q 041678 3 LRTGMLSSVSYYIHGD-----------NKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAV 71 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~-----------~~~~~~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaV 71 (402)
..+|+|||.|..+... ...-+.+.+....++.. ...+.|++|+|+|++|+ +.++.++|+++|
T Consensus 111 p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~-----~~~~~d~~VlElSSfQL--~~~~~~~P~iav 183 (448)
T COG0771 111 PIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLE-----QAEPADVYVLELSSFQL--ETTSSLRPEIAV 183 (448)
T ss_pred CEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhc-----ccCCCCEEEEEcccccc--ccCccCCccEEE
Confidence 4689999999875321 11122334444433211 13478999999999999 568899999999
Q ss_pred EeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCC-ceEEeeEEee
Q 041678 72 FTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKA-DVHPLKFELS 150 (402)
Q Consensus 72 iTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~ 150 (402)
||||++||+|||+|+|+|..+|++|+.++ .+ ++|+|.||+.+..+.... .+..+++|+....-. ..++..-..
T Consensus 184 ilNi~~DHLD~H~s~e~Y~~aK~~i~~~~--~~--~~Vin~dd~~~~~~~~~~-~~~~~~~fs~~~~~~~~~~~~~~~~- 257 (448)
T COG0771 184 ILNISEDHLDRHGSMENYAAAKLRILEGQ--TE--VAVINADDAYLKTLADEA-TKARVIWFSFGEPLADGDYIYDGKL- 257 (448)
T ss_pred EecCCHHHhhhccCHHHHHHHHHHHHcCC--cc--EEEEeCCcHHHhhhhhhc-ccceeEEEEccccccccceeecchh-
Confidence 99999999999999999999999999886 22 899999999998887654 345667776633211 111111100
Q ss_pred cCceEEEEEcCCee-E-EEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEEC-C
Q 041678 151 LFETQVLVNTPHGI-L-EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDY-A 227 (402)
Q Consensus 151 ~~~~~~~~~~~~~~-~-~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~-a 227 (402)
. ..+.. . .-.++++|.||++|+++|+++|+.+|++++.|.++|.+|++++||||.+...+|+.||+|+ |
T Consensus 258 -----~---~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~gv~~e~i~~~L~~F~gl~HR~e~v~~~~gv~f~NDSKA 329 (448)
T COG0771 258 -----V---FKGEKLLPADELKLPGAHNLENALAALALARALGVPPEAILEALSSFTGLPHRLEFVGEKDGVLFINDSKA 329 (448)
T ss_pred -----c---cccccccchhhcCCcchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcceEEEEecCCEEEecCCCC
Confidence 0 11111 1 2257999999999999999999999999999999999999999999999999999999997 9
Q ss_pred CCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhh
Q 041678 228 HTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEY 307 (402)
Q Consensus 228 hnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 307 (402)
+||+|+..+|+.++ +++++|+|+ .+|+..... +.++.......+++.|.. ...+... +....
T Consensus 330 TN~~At~~AL~~~~----~~v~lI~GG-~~Kg~df~~-L~~~~~~~~~~~~~~G~~-----~~~i~~~-l~~~~------ 391 (448)
T COG0771 330 TNVDATLAALSGFD----GPVILIAGG-DDKGADFSP-LAEILAKVIKKLVLIGED-----AEKIAAA-LKEAG------ 391 (448)
T ss_pred CCHHHHHHHHHcCC----CCEEEEECC-CCCCCChhH-HHHHhhhcceEEEEeCCC-----HHHHHHH-HHhcC------
Confidence 99999999999995 578888884 456666444 444444545556665442 1222221 11110
Q ss_pred hhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHhhH
Q 041678 308 LKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVD 382 (402)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (402)
..+..++++++|++.+.+.+++||+||++ ++|.||+. +++|.+|++.|+++++.+.
T Consensus 392 ---------------~~~~~~~~le~Av~~a~~~a~~gd~VLLS-PacASfDq---f~~feeRG~~F~~~v~~l~ 447 (448)
T COG0771 392 ---------------PSLVICETLEEAVQLARELAQPGDVVLLS-PACASFDQ---FKNFEERGEEFKELVSELG 447 (448)
T ss_pred ---------------CceeecCcHHHHHHHHHHhhcCCCeEEEc-ccccchhh---hcCHHHHHHHHHHHHHHhc
Confidence 11557789999999999999999998885 67889998 7888999999999998753
No 13
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=4.2e-41 Score=337.07 Aligned_cols=321 Identities=20% Similarity=0.199 Sum_probs=232.2
Q ss_pred CCceEEEeccceEeCCcee----cCC--CCCCCCHHHH----HHHHHHHHHCCCCEEEEecccCCcc--cCCccccccCE
Q 041678 2 GLRTGMLSSVSYYIHGDNK----LES--PRTTPDAVMV----QNLMAKMLHNGTEAVVMEASSHGLA--LGRCSEVDFDI 69 (402)
Q Consensus 2 g~~~g~~~t~g~~~~~~~~----~~~--~~~~p~~~~~----~~~l~~~~~~~~d~~VlE~g~~g~~--~d~~~~~~p~i 69 (402)
...+|+|||.|......-+ ... ...++..+.. ...+..+ ..+++++|+|+|+++.+ ..++..++|++
T Consensus 108 ~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~n~~iG~p~~l~~~-~~~~~~~V~E~g~s~~~e~~~~~~~~~Pdi 186 (479)
T PRK14093 108 AKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASFNNHWGVPLSLARC-PADARFAVFEIGMNHAGEIEPLVKMVRPHV 186 (479)
T ss_pred CCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccCCCccchhHHHHcC-CCCCcEEEEEeCCCCCchHHHHhcccCCCE
Confidence 3578999999987533211 010 1122222111 0112222 35789999999987763 33577889999
Q ss_pred EEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCC-C-CCEEEEeccCCCCceEEeeE
Q 041678 70 AVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNP-D-VPVVTFAMENKKADVHPLKF 147 (402)
Q Consensus 70 aViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~~~ 147 (402)
+|||||++||+++|+|+|+|+++|.+||+.+ ++++.+|+|.||+....+...... . .++++|+.+ ..++++...+
T Consensus 187 aViTNI~~DHLd~~gt~e~~~~aK~~l~~~~--~~~g~~VlN~Dd~~~~~l~~~~~~~~~~~vi~~g~~-~~~~~~~~~~ 263 (479)
T PRK14093 187 AIITTVEPVHLEFFSGIEAIADAKAEIFTGL--EPGGAAVLNRDNPQFDRLAASARAAGIARIVSFGAD-EKADARLLDV 263 (479)
T ss_pred EEEcCCCHHHHhhcCCHHHHHHHHHHHHccC--CCCCEEEEeCCcHHHHHHHHHhhhccCCcEEEEeCC-CCccEEEEEE
Confidence 9999999999999999999999999999876 556899999999988877654311 1 267899863 3456666655
Q ss_pred EeecCceEEEEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeec---CCCeEEEE
Q 041678 148 ELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDE---EQAFGVIV 224 (402)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~---~~g~~vi~ 224 (402)
.....+..|.+...++...++++++|.||++|+++|++++..+|++.++|+++|.+|++++||++.++. .++..+|+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~~l~~~~~~~gR~~~~r~~~~~~~~~iID 343 (479)
T PRK14093 264 ALHADCSAVHADILGHDVTYKLGMPGRHIAMNSLAVLAAAELAGADLALAALALSQVQPAAGRGVRHTLEVGGGEATLID 343 (479)
T ss_pred EEcCCceEEEEEECCceEEEEecCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCcCCcceEEEeecCCCCEEEEE
Confidence 554455566665544556788999999999999999999999999999999999999999999998753 23577888
Q ss_pred E-CCCCHHHHHHHHHHHhhhC---CCcEEEEEccCCCCCCC----ChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHH
Q 041678 225 D-YAHTPDALSRLLDSVRELA---PRRIITVVGCAGESDRG----KRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDM 296 (402)
Q Consensus 225 D-~ahnp~s~~~~l~~l~~~~---~~~~i~V~g~~~~~~~~----~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~ 296 (402)
| |||||+|++++++++++.+ ++|+++|||.|.+.... |+++...+....+|.|+++++.. ..+.+.
T Consensus 344 DsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~~~h~~~~~~~~~~~~d~v~~~G~~~-----~~~~~~- 417 (479)
T PRK14093 344 ESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGPELHRGLAEAIRANAIDLVFCCGPLM-----RNLWDA- 417 (479)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcCcHHHHHHHHHHHHHHHcCCCEEEEEchhH-----HHHHHh-
Confidence 8 9999999999999999873 46899999998665443 23333333345789999886421 112111
Q ss_pred HhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCC
Q 041678 297 LAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354 (402)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg 354 (402)
+ +.+ ....++++.+++.+.+.+..++||+||++||.
T Consensus 418 ---~--------~~~-----------~~~~~~~~~~~~~~~l~~~~~~gd~vL~kGSr 453 (479)
T PRK14093 418 ---L--------SSG-----------KRGGYAEDAAALESQVVAAIRAGDVIMVKGSL 453 (479)
T ss_pred ---h--------ccc-----------ccceeeCCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 1 000 00124577888888888899999999999993
No 14
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.6e-41 Score=326.75 Aligned_cols=296 Identities=24% Similarity=0.302 Sum_probs=230.3
Q ss_pred CCCCCHHHHHHHHH--HHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCC-CHHHHHHHHHHHhhhcC
Q 041678 25 RTTPDAVMVQNLMA--KMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHG-TEEEYRNAKAKLFSRMV 101 (402)
Q Consensus 25 ~~~p~~~~~~~~l~--~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~g-t~e~i~~~K~~i~~~~~ 101 (402)
...|+.||+.|+++ +|.+.++|++|+|+|+||+ +|+||++.|+++|||+|+.||++++| |+|+|+.+|++||+.
T Consensus 116 ~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGR-lDATNVi~p~vsvIT~I~lDH~~~LG~tie~IA~EKAGI~k~-- 192 (427)
T COG0285 116 LISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGR-LDATNVIEPDVSVITSIGLDHTAFLGDTLESIAREKAGIIKA-- 192 (427)
T ss_pred cCCCcHHHHHHHHHHHHHHhCCCCEEEEecccccc-ccchhccCCceEEEcccChhHHHHhCCcHHHHHHHhhhhccC--
Confidence 37799999999877 5778899999999999999 99999999999999999999999999 999999999999964
Q ss_pred CCCCceEEEeC-CChHHHHHHhcc--CCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCeeEEEEeCCCchH-HH
Q 041678 102 DPERHRKVVNI-DDPNATSFIAQG--NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH-NI 177 (402)
Q Consensus 102 ~~~~~~~iln~-dd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h-n~ 177 (402)
+.++|+.. +.|......... ...+++..++.. +.... .+..|.+...+....+.+|+.|.| |+
T Consensus 193 ---g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~~~~lp~l~~~~Q~ 259 (427)
T COG0285 193 ---GKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPD-----FQVLE-----EGNGFSFQGGGGLLDLPLPLLGGHHQI 259 (427)
T ss_pred ---CCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccc-----hhhcc-----ccceEEEecCCeeeeeccccccchhHH
Confidence 45666655 456555544432 234555555431 11111 123344443334457788988888 99
Q ss_pred HHHHHHHHHHHHcC--CCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhhCC-Cc-EEEEEc
Q 041678 178 YNILAAVAVGIAVG--APLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP-RR-IITVVG 253 (402)
Q Consensus 178 ~Na~aA~a~a~~lg--i~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~~-~~-~i~V~g 253 (402)
.||++|++++..++ ++.+.|+++|.+. .||||||++... +.+++|+||||+|+.++.+.+++.++ .+ +++|+|
T Consensus 260 ~NAa~Ai~al~~l~~~i~~~~i~~gl~~~-~wpGR~e~l~~~--p~i~lDgAHNp~aa~~La~~l~~~~~~~~~~~~v~g 336 (427)
T COG0285 260 ENAALAIAALEALGKEISEEAIRKGLANV-DWPGRLERLSEN--PLILLDGAHNPHAARALAETLKTLFNDRPRLTLVFG 336 (427)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHhC-cCCceEEEecCC--CeEEEECCCCHHHHHHHHHHHHHHhccCCceEEEEE
Confidence 99999999999998 5899999999999 899999999864 78999999999999999999998764 33 789999
Q ss_pred cCCCCCCCChHHHHHHHhhcCCEEEEc-cCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHH
Q 041678 254 CAGESDRGKRPLMTKIATDKSDVTILT-SDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRR 332 (402)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~d~vi~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (402)
+..+||. ..++..+... .+.++++ .+.+|+.++.++.+...... ... .++.+
T Consensus 337 ~l~dKd~--~~~l~~L~~~-~~~~~~~~~~~~ra~~~~~l~~~~~~~~-----------------------~~~-~~~~~ 389 (427)
T COG0285 337 MLKDKDI--AGMLAALLPI-VDEIYTTPLPWPRALDAEELLAFAGERG-----------------------GVE-LDDVA 389 (427)
T ss_pred eecCCCH--HHHHHHhhcc-CcEEEEccCCCcccCCHHHHHHHHHhhc-----------------------CCc-cccHH
Confidence 9988876 4566666655 6667776 46789998887655321110 011 46788
Q ss_pred HHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCc
Q 041678 333 VAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDD 370 (402)
Q Consensus 333 ~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~ 370 (402)
+|++.+.+...++|.|||||| +|++++++.++.+
T Consensus 390 ~a~~~~~~~~~~~~~ilV~GS----ly~~~ev~~~~~~ 423 (427)
T COG0285 390 EALELALEKADEDDLVLVTGS----LYLAGEVLELLKK 423 (427)
T ss_pred HHHHHHHHhcCCCCeEEEEec----HHHHHHHHHHhhc
Confidence 999999888777899999999 9999888877644
No 15
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=4.1e-41 Score=336.91 Aligned_cols=314 Identities=16% Similarity=0.186 Sum_probs=221.3
Q ss_pred CCCHHHHHHHHH--HHHHCCCCEEEEecccCCcccCCcccccc---CEEEEeCCCcchhccCC-CHHHHHHHHHHHhhhc
Q 041678 27 TPDAVMVQNLMA--KMLHNGTEAVVMEASSHGLALGRCSEVDF---DIAVFTNLTRDHMDFHG-TEEEYRNAKAKLFSRM 100 (402)
Q Consensus 27 ~p~~~~~~~~l~--~~~~~~~d~~VlE~g~~g~~~d~~~~~~p---~iaViTnI~~DHl~~~g-t~e~i~~~K~~i~~~~ 100 (402)
.|+.||+.|+++ +|.+.++|++|+|+|+||+ .|.||++.| +++|||||+.||++++| |+|+|+.+|++|++.
T Consensus 154 ~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGr-lDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tle~IA~eKagIik~- 231 (510)
T PLN02913 154 SLTHFEVLTALAFKLFAQENVDIAVIEAGLGGA-RDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQ- 231 (510)
T ss_pred CCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCC-cccccccCCCCCcEEEEccccHHHHhhhcccHHHHHHHHhhhccC-
Confidence 589999999866 5778999999999999999 899999875 99999999999999999 999999999999963
Q ss_pred CCCCCceEEEeC-CChHHHHHHh-cc-CCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEc-----CC------eeEE
Q 041678 101 VDPERHRKVVNI-DDPNATSFIA-QG-NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNT-----PH------GILE 166 (402)
Q Consensus 101 ~~~~~~~~iln~-dd~~~~~~~~-~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~ 166 (402)
+..+|++. ..+....++. .+ ..+++++.++. ...++....... ..+..|.+.. .. ....
T Consensus 232 ----g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (510)
T PLN02913 232 ----GRPVVLGGPFLPHIESILRDKASSMNSPVVSASD--PGVRSSIKGIIT-DNGKPCQSCDIVIRVEKDDPLFIELSD 304 (510)
T ss_pred ----CCCEEECCCCCHHHHHHHHHHHHHhCCCEEEecc--ccccceeecccc-cCCceeEEecccccccccccccccccc
Confidence 56788875 3344444332 22 13567766642 111121111000 1111222210 01 1124
Q ss_pred EEeCCCchHHHHHHHHHHHHHHHc-----CCCHHHHHHHhhcCCCCCCceeeeecC-------CCeEEEEECCCCHHHHH
Q 041678 167 ISSGLLGRHNIYNILAAVAVGIAV-----GAPLEDIVRGIEEVDAVPGRCELIDEE-------QAFGVIVDYAHTPDALS 234 (402)
Q Consensus 167 ~~l~l~G~hn~~Na~aA~a~a~~l-----gi~~~~i~~~L~~~~~~~gR~e~i~~~-------~g~~vi~D~ahnp~s~~ 234 (402)
+.+++.|.||++|+++|++++..+ +++.+.|+++|.++ .||||||++... +++.||+|+||||+|++
T Consensus 305 ~~l~L~G~hq~~Naa~Alaa~~~L~~~~~~i~~~~I~~gL~~~-~~pGR~E~i~~~~~~~~~~~~~~vIlDgAHNp~s~~ 383 (510)
T PLN02913 305 VNLRMLGSHQLQNAVTAACAALCLRDQGWRISDASIRAGLENT-NLLGRSQFLTSKEAEVLGLPGATVLLDGAHTKESAK 383 (510)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCCCceEEeeccccccccCCCCEEEEECCCCHHHHH
Confidence 678999999999999999999987 69999999999999 699999998632 35689999999999999
Q ss_pred HHHHHHhh-hCCCcEEEEEccCCCCCCCChHHHHHHHhh-cCCEEEEccC-----CCCCCCHHHHHHHHHhcccchhhhh
Q 041678 235 RLLDSVRE-LAPRRIITVVGCAGESDRGKRPLMTKIATD-KSDVTILTSD-----NPMNEDPLDILDDMLAGVGWTMQEY 307 (402)
Q Consensus 235 ~~l~~l~~-~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~-~~d~vi~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~ 307 (402)
++++++++ ++.+++++|+|+++||+. ..++..+... .+|.++++.. ++|+.++.++.+.+.....
T Consensus 384 al~~~L~~~~~~~ki~~V~gml~DKd~--~~~l~~l~~~~~~d~v~~~~~~~~~~~~r~~~~~~l~~~~~~~~~------ 455 (510)
T PLN02913 384 ALVDTIKTAFPEARLALVVAMASDKDH--LAFASEFLSGLKPEAVFLTEADIAGGKSRSTSASALKEAWIKAAP------ 455 (510)
T ss_pred HHHHHHHHhcCCCCEEEEEEccCCCCH--HHHHHHHhcccCCCEEEEEcCCCCCCCCCCCCHHHHHHHHHHhcc------
Confidence 99999987 444578899999877664 4555544432 4688777743 3788888876553221100
Q ss_pred hhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhC--CCCcEEEEecCCCcceEEeCCEeeec
Q 041678 308 LKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMG--EEGDMVVVAGKGHETYQIEGDKKEFF 368 (402)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~gD~VLv~Gsg~~~~~~~~~~~~~~ 368 (402)
.. ...+.. ......+++..+|++.+.+.+ +++|.||+||| +|++++++.++
T Consensus 456 --~~-~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~v~GS----lylv~~v~~~~ 508 (510)
T PLN02913 456 --EL-GIETLL---AENNSLLKSLVDASAILRKARTLDPSSVVCVTGS----LHIVSAVLASL 508 (510)
T ss_pred --cc-Cceeec---cccccccCCHHHHHHHHHHhcccCCCCEEEEeCc----HHHHHHHHHHh
Confidence 00 000000 001123667889999888776 47899999999 99988876554
No 16
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=3.4e-40 Score=327.81 Aligned_cols=284 Identities=25% Similarity=0.384 Sum_probs=216.5
Q ss_pred CCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHh
Q 041678 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~ 122 (402)
.+.|++|+|+|++++ +.++.++|+++|||||++||+++|||+|+|+.+|++|++.+ ++++.+|+|.||+.+..+..
T Consensus 148 ~~~~~~V~E~~~~~l--~~~~~~~p~iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~--~~~~~~i~n~dd~~~~~~~~ 223 (433)
T TIGR01087 148 EGAELYVLELSSFQL--ETTESLRPEIALILNISEDHLDWHGSFEDYVAAKLKIFARQ--TEGDVAVLNADDPRFARLAQ 223 (433)
T ss_pred cCCCEEEEEcChhHh--cCCcccCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcC--CCCCEEEEECCCHHHHHhhh
Confidence 578999999999887 47788999999999999999999999999999999999876 55789999999987766554
Q ss_pred ccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 041678 123 QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIE 202 (402)
Q Consensus 123 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~ 202 (402)
. ...++++|+... ..+.. +........+.. ..+.++++|.||++|+++|++++..+|++.+.|+++|.
T Consensus 224 ~--~~~~~~~~g~~~-~~~~~---~~~~~~~~~~~~------~~~~l~l~G~hn~~Na~aAia~a~~lgi~~~~i~~~L~ 291 (433)
T TIGR01087 224 K--SKAQVIWFSVEK-DAERG---LCIRDGGLYLKP------NDLEGSLLGLHNAENILAAIALAKSLGLNLEAILEALR 291 (433)
T ss_pred h--cCceEEEEeCCc-cCCCc---eEEECCEEEEec------cccccCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3 245788998532 11111 001111111110 12568999999999999999999999999999999999
Q ss_pred cCCCCCCceeeeecCCCeEEEEEC-CCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEcc
Q 041678 203 EVDAVPGRCELIDEEQAFGVIVDY-AHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTS 281 (402)
Q Consensus 203 ~~~~~~gR~e~i~~~~g~~vi~D~-ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 281 (402)
+|++++||||++...+|+++|+|| +|||+|+.++++.++ +++++|+|++ +++....++...+ ....+.+++.+
T Consensus 292 ~f~g~~~R~e~v~~~~g~~~idD~~atn~~a~~~al~~~~----~~ii~I~Gg~-~~~~d~~~~~~~l-~~~~~~v~~~G 365 (433)
T TIGR01087 292 SFKGLPHRLEYVGQKNGVHFYNDSKATNVHATLAALSAFD----NPVILIVGGD-DKGADFSPLAPAA-AGKVKAVLAIG 365 (433)
T ss_pred hCCCCCCceEEEEEECCEEEEEcCCCCCHHHHHHHHHhCC----CCEEEEEcCC-CCCCCHHHHHHHH-HhhCCEEEEEC
Confidence 999999999999876789999996 999999999999984 3688999865 3444444544443 34566777764
Q ss_pred CCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEe
Q 041678 282 DNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE 361 (402)
Q Consensus 282 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~ 361 (402)
.. ...+.+.+ ... +..+..++++++|++.+.+.+++||+||++|+ +.+|++
T Consensus 366 ~~-----~~~l~~~~-~~~---------------------~~~~~~~~~~~~a~~~~~~~~~~gdiVLlspa-~as~d~- 416 (433)
T TIGR01087 366 ED-----AAKIAPLL-KEA---------------------GLSVYLVESLEEAVQAAREVASPGDVVLLSPA-CASFDQ- 416 (433)
T ss_pred CC-----HHHHHHHH-HhC---------------------CCcEEEeCCHHHHHHHHHHhcCCCCEEEECcc-chhhcc-
Confidence 42 23333221 100 01134567889999999999999999999875 568888
Q ss_pred CCEeeecCcHHHHHHHHH
Q 041678 362 GDKKEFFDDREESREALQ 379 (402)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~ 379 (402)
+++|.+|++.|+++++
T Consensus 417 --f~~~~~RG~~F~~~v~ 432 (433)
T TIGR01087 417 --FKSYEERGEKFKELVR 432 (433)
T ss_pred --ccCHHHHHHHHHHHHh
Confidence 7899999999999975
No 17
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.9e-40 Score=331.82 Aligned_cols=288 Identities=23% Similarity=0.251 Sum_probs=215.8
Q ss_pred CCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHh
Q 041678 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~ 122 (402)
.+.|++|+|+|++++ +.++.++|+++|||||++||+++|||+|+|+.+|++|++.. ++ +.+|+|.||+....+.+
T Consensus 160 ~~~~~~V~E~~~~~l--d~t~~i~P~iaVITNI~~DHld~lgsle~ia~~K~~ii~~~--~~-~~~V~n~dd~~~~~~~~ 234 (460)
T PRK01390 160 PAGRVYVLELSSYQI--DLAPSLDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFAGQ--GP-DTAVIGVDDAYCRAIAD 234 (460)
T ss_pred CCCCEEEEEcCcccc--ccccccCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcC--CC-CEEEEeCCCHHHHHHHH
Confidence 468999999999976 67899999999999999999999999999999999999875 44 78999999998777654
Q ss_pred ccC-CCCCEEEEeccCC-CCceEEeeEEeecCceEEEEEcCCe--eEEE--EeCCCchHHHHHHHHHHHHHHHcCCCHHH
Q 041678 123 QGN-PDVPVVTFAMENK-KADVHPLKFELSLFETQVLVNTPHG--ILEI--SSGLLGRHNIYNILAAVAVGIAVGAPLED 196 (402)
Q Consensus 123 ~~~-~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~l~l~G~hn~~Na~aA~a~a~~lgi~~~~ 196 (402)
... ..+++++|+.... ..++... .+..+....... .+.+ .++++|.||++|+++|++++..+|++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAiaa~~~lgi~~~~ 308 (460)
T PRK01390 235 RLEAAGRRVVRISAGKPLADGVYAD------GGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAAYAAARALGLSPEE 308 (460)
T ss_pred hccccCceEEEEeCCCCCcCceEEe------CCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHHHHHHHHcCCCHHH
Confidence 432 2456778875321 1112111 112222211100 1122 14799999999999999999999999999
Q ss_pred HHHHhhcCCCCCCceeeeecCCCeEEEEE-CCCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCC
Q 041678 197 IVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSD 275 (402)
Q Consensus 197 i~~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d 275 (402)
|+++|.+|+++|||||++...+++.+|+| |||||+|++++|+.+ +++++|+|+.. ++.. ...+..+. ...+
T Consensus 309 i~~gL~~~~~~~gR~e~i~~~~g~~vIdDs~ahNp~s~~~aL~~~-----~~i~~I~G~~d-~~~~-~~~L~~~~-~~v~ 380 (460)
T PRK01390 309 IAAGLASFPGLAHRMEQVGRRGGVLFVNDSKATNADAAAKALSSF-----DRIYWIAGGKP-KEGG-IESLAPFF-PRIA 380 (460)
T ss_pred HHHHHHhCCCCCCceEEEeeeCCcEEEEcCCCCCHHHHHHHHHhC-----CCeEEEecCcc-CCCC-HHHHHHHH-HhhC
Confidence 99999999999999999987667889999 899999999988876 36889998533 2222 23344433 4566
Q ss_pred EEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhC----CCCcEEEEe
Q 041678 276 VTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMG----EEGDMVVVA 351 (402)
Q Consensus 276 ~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~----~~gD~VLv~ 351 (402)
.+++.+ .+..++.+.+.. . ..+..++++++|++.+.+.+ ++||+||++
T Consensus 381 ~v~~~g-----~~~~~l~~~~~~-~----------------------~~~~~~~~l~~Av~~a~~~a~~~~~~g~~vlls 432 (460)
T PRK01390 381 KAYLIG-----EAAEAFAATLGG-A----------------------VPFEICGTLERAVAAAAADAAADGAPEPVVLLS 432 (460)
T ss_pred EEEEEC-----CCHHHHHHHHhc-C----------------------CCEEEeCCHHHHHHHHHHhhhccCCCCCEEEeC
Confidence 666653 334444332110 0 01445678999999999999 999999985
Q ss_pred cCCCcceEEeCCEeeecCcHHHHHHHHHhh
Q 041678 352 GKGHETYQIEGDKKEFFDDREESREALQYV 381 (402)
Q Consensus 352 Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (402)
+||.||++ +++|.+|++.|+++++.+
T Consensus 433 -P~~as~d~---f~~~~~rg~~f~~~~~~~ 458 (460)
T PRK01390 433 -PACASFDQ---FKNFEVRGDAFRELVAAL 458 (460)
T ss_pred -hhhhcccc---ccCHHHHHHHHHHHHHHh
Confidence 58999999 789999999999999864
No 18
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.6e-40 Score=311.67 Aligned_cols=283 Identities=27% Similarity=0.349 Sum_probs=235.4
Q ss_pred CCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhc
Q 041678 44 GTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ 123 (402)
Q Consensus 44 ~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~ 123 (402)
..+|.|+|.+.+-. ..-.++|+++|||||+.||+|+|++++++.+++..+++.+ |..|.+|+|.|||.++.++..
T Consensus 155 ~~~~fV~EADEsD~---sFl~~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~v--p~~G~~v~~~dd~~l~~l~~~ 229 (459)
T COG0773 155 SGDYFVAEADESDS---SFLHYNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNV--PFYGRAVVCGDDPNLRELLSR 229 (459)
T ss_pred CCceEEEEeccccc---ccccCCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhC--CccceEEEECCCHHHHHHHhc
Confidence 44899999999733 3455799999999999999999999999999999999988 778999999999999998875
Q ss_pred cCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCee-EEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 041678 124 GNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI-LEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIE 202 (402)
Q Consensus 124 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~ 202 (402)
. ...++++||.++. ++|++.++.....+..|.+...++. .++.++++|+||+.|+++|+++|..+|++.+.|+++|+
T Consensus 230 ~-~~~~v~tyG~~~~-ad~~a~ni~~~~~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia~a~~~Gi~~~~i~~aL~ 307 (459)
T COG0773 230 G-CWSPVVTYGFDDE-ADWRAENIRQDGSGTTFDVLFRGEELGEVKLPLPGRHNVLNALAAIAVARELGIDPEAIAEALA 307 (459)
T ss_pred c-cCCcEEeecCCCc-CcEEEEEeEEeccccEEEEEEcCceeEEEEEcCCchhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4 4678999999654 9999999988888888888777664 58999999999999999999999999999999999999
Q ss_pred cCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhhCC--CcEEEEEccCCCCCCCChHHHHHHHh--hcCCEEE
Q 041678 203 EVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP--RRIITVVGCAGESDRGKRPLMTKIAT--DKSDVTI 278 (402)
Q Consensus 203 ~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~~--~~~i~V~g~~~~~~~~~~~~~~~~~~--~~~d~vi 278 (402)
+|+++.+|||+....+++++|+||||||.+++++|+++|+..+ +|+++||. +.+..+.+.++.+++. ..+|.|+
T Consensus 308 ~F~GvkRRfe~~g~~~~~~viDDYaHHPtEI~aTL~aaR~~~~~~~rIvaifQ--PHrySRt~~~~~dF~~~l~~AD~v~ 385 (459)
T COG0773 308 SFQGVKRRFELKGEVNGVTVIDDYAHHPTEIKATLAAARQKVPGGKRIVAVFQ--PHRYSRTRDLLDDFAKALSDADEVI 385 (459)
T ss_pred hCCCcceeeEEeeeECCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEEC--CCchHhHHHHHHHHHHHHhcCCEEE
Confidence 9999999999999889999999999999999999999998765 58888885 4666777777777653 6889999
Q ss_pred EccCCCCCCCHHHH---HHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCC
Q 041678 279 LTSDNPMNEDPLDI---LDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355 (402)
Q Consensus 279 ~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~ 355 (402)
++..+..++.+.+. ...+...+. +. .+.. .++.++..+.+...+++||+||++|+|+
T Consensus 386 l~~VY~A~e~~~~g~~~~~~l~~~i~-------~~------------~~~~-~~~~~~~~~~l~~~~~~gD~il~mGAGd 445 (459)
T COG0773 386 LLDVYAAGEEPIEGDVSSEDLAEKIR-------QP------------GHVD-VPDLDDLVELLAKVAQPGDVILFMGAGD 445 (459)
T ss_pred EecccccCCCCCcCCccHHHHHHHhh-------cC------------Cccc-CCCHHHHHHHHHhhCCCCCEEEEecCCc
Confidence 99877766665321 111111111 00 0111 4567888889999999999999999987
No 19
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6e-40 Score=325.33 Aligned_cols=293 Identities=19% Similarity=0.226 Sum_probs=221.0
Q ss_pred CCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHh
Q 041678 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~ 122 (402)
.+.|++|+|+|++++ +.+..++|+++|||||++||+|+|+|+|+|+.+|.+||+++ ++++.+|+|.||+....+..
T Consensus 148 ~~~~~~VlE~ss~ql--~~~~~~~P~iavitNI~~DHLd~~~s~e~y~~aK~~i~~~~--~~~~~~Vln~Dd~~~~~~~~ 223 (454)
T PRK01368 148 ASKDGYVLELSSFQL--DLVKTFTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRM--DKDSYAVINIDNDYCREIFI 223 (454)
T ss_pred CCCCEEEEEcCchhh--ccccccCCCEEEEecCChhHhhccCCHHHHHHHHHHHHhcC--CCCCEEEEeCCcHHHHHHHH
Confidence 457999999999998 35677999999999999999999999999999999999887 56789999999998887654
Q ss_pred ccC--CCCCEEEEeccCC-CCceEEeeEEeecCceEEEEEcC-CeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHH
Q 041678 123 QGN--PDVPVVTFAMENK-KADVHPLKFELSLFETQVLVNTP-HGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIV 198 (402)
Q Consensus 123 ~~~--~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~ 198 (402)
... ...++++|+.... ...+. .......+..... ...+.+.++++|.||++|+++|++++..+|++.+.|+
T Consensus 224 ~~~~~~~~~v~~f~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAia~~~~lgi~~~~i~ 298 (454)
T PRK01368 224 KLQQEQRIKLIPFSVTKILENGIS-----VVDDKISDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKIIGVEPKKIL 298 (454)
T ss_pred HhhcccCceEEEEeCCcccCCCcE-----EECCEEEEEecCCcceEEEecCCCCchhhHHHHHHHHHHHHHcCCCHHHHH
Confidence 321 2346788886321 11111 1111111111111 1234566789999999999999999999999999999
Q ss_pred HHhhcCCCCCCceeeeecCCCeEEEEE-CCCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEE
Q 041678 199 RGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVT 277 (402)
Q Consensus 199 ~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~v 277 (402)
++|.+|++||||||++...+++++|+| +||||+|+.+++++++ ++++|+|+. +++.....+.. ... ....+
T Consensus 299 ~~L~~F~~~~~Rle~v~~~~gv~~i~DS~atN~~a~~~al~~~~-----~i~lI~Gg~-dk~~~~~~L~~-~~~-~v~~v 370 (454)
T PRK01368 299 ESISSFQSLPHRMQYIGSINNISFYNDSKATNAISAVQSIKALD-----NIYWLAGGI-PKEGGIEEIKP-YFS-KIKKA 370 (454)
T ss_pred HHHHhCCCCCcceEEEEEECCeEEEECCCCCCHHHHHHHHHhcC-----CeEEEeccc-CCCCCHHHHHH-HHH-hhcEE
Confidence 999999999999999987778999999 7999999999999993 588999876 56555433332 232 34444
Q ss_pred EEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCC----cEEEEecC
Q 041678 278 ILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEG----DMVVVAGK 353 (402)
Q Consensus 278 i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~g----D~VLv~Gs 353 (402)
++.+ .++.++.+.+ ... ..+..++++++|++.+.+.+++| |+||++ +
T Consensus 371 ~~~g-----~~~~~l~~~~-~~~----------------------~~~~~~~~l~~Av~~a~~~a~~g~~~~d~VLlS-P 421 (454)
T PRK01368 371 YFYG-----QAKEIFANTA-KNI----------------------VDFVICDNLEQAFDLAYKDAVGDNAEVKNILLA-P 421 (454)
T ss_pred EEEC-----cCHHHHHHHh-hcC----------------------CCEEEcCCHHHHHHHHHHHhcCCCCCCCEEEeC-h
Confidence 4433 4444443321 110 01445678999999999999999 788885 6
Q ss_pred CCcceEEeCCEeeecCcHHHHHHHHHhhHHH
Q 041678 354 GHETYQIEGDKKEFFDDREESREALQYVDEL 384 (402)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (402)
+|+||++ +++|.+|++.|+++++++-+.
T Consensus 422 acaSfD~---f~~ye~RG~~F~~~v~~~~~~ 449 (454)
T PRK01368 422 SCSSYDQ---FKNFEERGELFIKLSQKFCSI 449 (454)
T ss_pred hhhcccc---ccCHHHHHHHHHHHHHHHHhh
Confidence 8999999 788999999999999987654
No 20
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.5e-40 Score=331.73 Aligned_cols=333 Identities=18% Similarity=0.230 Sum_probs=229.9
Q ss_pred CceEEEeccceEeCCce----ecCCC--CCCCCHHHHHHHHH--HHHHCCCCEEEEecccCCcccCCccccccCEEEEeC
Q 041678 3 LRTGMLSSVSYYIHGDN----KLESP--RTTPDAVMVQNLMA--KMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTN 74 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~~----~~~~~--~~~p~~~~~~~~l~--~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTn 74 (402)
..+|+|||.|......- +.... ..++..+ ...+. .....+.|++|+|+|++++ +..+.++|+++||||
T Consensus 123 ~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gni--g~~~~~~~~~~~~~~~~V~E~ss~~l--~~~~~i~P~iaVITN 198 (480)
T PRK01438 123 PWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNI--GTPVLDAVRDPEGYDVLAVELSSFQL--HWSPSVSPHSAAVLN 198 (480)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCc--cHHHHHHHhcCCCCCEEEEEcChHHh--CcCcccCCCEEEEec
Confidence 36899999998743210 10110 1112221 11111 2234578999999999988 355678999999999
Q ss_pred CCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccC--CCCCEEEEeccCC-CCceEEeeEEeec
Q 041678 75 LTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGN--PDVPVVTFAMENK-KADVHPLKFELSL 151 (402)
Q Consensus 75 I~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~~~~~~~~~~ 151 (402)
|++||+++|||+|+|+.+|++|++.. .+.+|+|.||+....+..... ..+++++|+.... ..++........
T Consensus 199 I~~DHld~lgt~e~ia~~K~~I~~~~----~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 273 (480)
T PRK01438 199 LAPDHLDWHGSMEAYAAAKARIYEGT----TVACVYNVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILV- 273 (480)
T ss_pred CChhhccccCCHHHHHHHHHHHHhCC----CceEEEeCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEE-
Confidence 99999999999999999999999752 468899999998877755331 2457788875321 122221110000
Q ss_pred CceEEEEEcCCe--eE-E-EEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEE-C
Q 041678 152 FETQVLVNTPHG--IL-E-ISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-Y 226 (402)
Q Consensus 152 ~~~~~~~~~~~~--~~-~-~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ 226 (402)
...|.....+. .+ . ..++++|.||++|+++|++++..+|++.+.|+++|.+|++++||||++...+++.+|+| |
T Consensus 274 -~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~~~~~~gR~E~i~~~~~~~iiDDs~ 352 (480)
T PRK01438 274 -DRAFVEDRQTSALELATLEDLRPAAPHNIANALAAAALARSFGVPPAAVRDGLRAFRPDAHRIEHVADADGVTWVDDSK 352 (480)
T ss_pred -EEeeccccccccceeeeHHHcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEEECCEEEEecCc
Confidence 00111110000 01 1 24789999999999999999999999999999999999999999999986667778888 8
Q ss_pred CCCHHHHHHHHHHHhhhCCCcEEEEEc-cCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhh
Q 041678 227 AHTPDALSRLLDSVRELAPRRIITVVG-CAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQ 305 (402)
Q Consensus 227 ahnp~s~~~~l~~l~~~~~~~~i~V~g-~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~ 305 (402)
||||+|++++++.+ +++++|+| .+.+++. ..++.. .....+.+++++.. ...+.+.+....
T Consensus 353 ahNp~a~~aaL~~l-----~~i~~I~gG~~~~kd~--~~~~~~-l~~~~~~vi~~g~~-----~~~~~~~l~~~~----- 414 (480)
T PRK01438 353 ATNPHAAAASLAAY-----PSVVWIAGGLAKGADF--DDLVRR-AAGRLRGVVLIGAD-----RAEIAEALARHA----- 414 (480)
T ss_pred cCCHHHHHHHHHhC-----CCEEEEEecccCCCCH--HHHHHH-HHhhceEEEEECCC-----HHHHHHHHHhcC-----
Confidence 99999999999988 36889996 6665554 344444 44567888887532 223322221110
Q ss_pred hhhhcCCCCCCCCCCCCCceeec-----ccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHh
Q 041678 306 EYLKYGENDYYPPLPNGHRLFLH-----DIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQY 380 (402)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (402)
.. ..+..+ +++++|++.+.+.++++|+||++ ++|+||+. +++|.+|++.|++++++
T Consensus 415 -----------~~----~~~~~~~~~~~~~~~~A~~~a~~~~~~~d~vlls-p~~as~d~---f~~~~~Rg~~F~~~v~~ 475 (480)
T PRK01438 415 -----------PD----VPVVEVDRTDTGAMDEAVAAAAKLARPGDTVLLA-PAAASMDM---FTDYAARGDAFAAAVRA 475 (480)
T ss_pred -----------CC----CCEEEecCCCcCCHHHHHHHHHHhCCCCCEEEec-hhhhcccc---ccCHHHHHHHHHHHHHH
Confidence 00 012223 37899999999999999998886 57888987 79999999999999987
Q ss_pred hH
Q 041678 381 VD 382 (402)
Q Consensus 381 ~~ 382 (402)
+.
T Consensus 476 ~~ 477 (480)
T PRK01438 476 LL 477 (480)
T ss_pred hh
Confidence 54
No 21
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=1.8e-39 Score=343.33 Aligned_cols=324 Identities=24% Similarity=0.285 Sum_probs=239.6
Q ss_pred CCCceEEEeccceEeCCceecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccc-cccCEEEEeCCCcch
Q 041678 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE-VDFDIAVFTNLTRDH 79 (402)
Q Consensus 1 ~g~~~g~~~t~g~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~-~~p~iaViTnI~~DH 79 (402)
.|++||+++|.|++++++.+..+.+++|.+.. ..+.+.++|++|+|+|++|+ .+.+.. .+|+++|||||+.||
T Consensus 504 ~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~-----~~l~~~~vd~aVlE~~~ggi-l~~gl~~~~pdvaVITNI~~DH 577 (864)
T TIGR02068 504 TGKVVGMTTTDGVYIGKYLVEKGDNTGPASAR-----RILMDPTVDAAVLETARGGI-LREGLAFDRCDVGVVTNIAGDH 577 (864)
T ss_pred CCCcEEEecCCceEECCEEEecCCCCChHHHH-----HHhhCCCCCEEEEEccCCch-hhccCCcccccEEEEecCCHHH
Confidence 48899999999999988777677777875533 33567899999999999998 555444 479999999999999
Q ss_pred hccC--CCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeE-----E-eec
Q 041678 80 MDFH--GTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKF-----E-LSL 151 (402)
Q Consensus 80 l~~~--gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~-~~~ 151 (402)
++++ +|+|+|+.+|+.+++.+ ++++.+|+|.|||.+..+.+.. ..++++|+.+.. .++..... . +..
T Consensus 578 L~~~g~~tlE~ia~~K~~i~~~i--~~~g~~VlNaDd~~~~~~a~~~--~~~vi~f~~~~~-~~~~~~~~~~~~~~~~~~ 652 (864)
T TIGR02068 578 LGIGDINTIEDLADVKRVVVEVV--LPDGYAVLNADDPMVAAMAEKC--KGKIAYFSMDPN-NPTVAAHIADGGRAVYYE 652 (864)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhh--cCCCEEEEECCCHHHHHHHHhC--CCCEEEEecCCC-ChHHHHHHHcCCcEEEEc
Confidence 9975 59999999999999876 6678999999999888776643 467888986321 11100000 0 000
Q ss_pred CceEEEEEcCCe-----eEEEEeCCCc--hHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CCCceeeeecCCCe
Q 041678 152 FETQVLVNTPHG-----ILEISSGLLG--RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDA----VPGRCELIDEEQAF 220 (402)
Q Consensus 152 ~~~~~~~~~~~~-----~~~~~l~l~G--~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~----~~gR~e~i~~~~g~ 220 (402)
.+..+....... ...+.+++.| .||++|+++|+++++.+|++.+.|+++|.+|++ +|||||++.. +++
T Consensus 653 ~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAiaaa~~lgi~~e~I~~gL~~F~~~~~~~pGR~e~~~~-~g~ 731 (864)
T TIGR02068 653 NGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAVAAAWALGVPIELIRAGIRTFDADAAQAPGRFNLFNL-GGA 731 (864)
T ss_pred CCEEEEEecCccccccceeeeccccCCcccchHHHHHHHHHHHHHcCCCHHHHHHHHHhccccccCCCCceEEEEe-CCc
Confidence 111111111110 1123334444 899999999999999999999999999999976 9999999964 578
Q ss_pred EEEEECCCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCC-CCCCCHHHHHHHHHhc
Q 041678 221 GVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDN-PMNEDPLDILDDMLAG 299 (402)
Q Consensus 221 ~vi~D~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~i~~~~~~~ 299 (402)
++|+||||||+|++++++++++++++++++|+|++++|+......+.+++...+|.++++.++ +|+.++.+..+.+.++
T Consensus 732 ~vI~DyAHNP~a~~all~~l~~~~~~r~i~Vig~~gdr~~~~~~~lg~~l~~~~d~vil~~~~~~rg~~~ge~~~~i~~~ 811 (864)
T TIGR02068 732 HVLVDYGHNPAAIEAVGAAIRNWPARRRIGVIGGPGDRRDEDLVEQGELLGGAFDQIILKEDDDVRGRPRGEAAALLRQG 811 (864)
T ss_pred EEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEECCCCCCChhHHHHHHHHHHHhCCEEEEEeCCCcCCCCCchHHHHHHHH
Confidence 999999999999999999998875567899999999986655455556666678999988654 5666655544433322
Q ss_pred ccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEec
Q 041678 300 VGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352 (402)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~G 352 (402)
+. +.+. ...+....++.+|++.+.+.+++||+||+++
T Consensus 812 ~~-------~~~~---------~~~v~~~~d~~eAi~~a~~~a~~gDlVLi~~ 848 (864)
T TIGR02068 812 LR-------QSAR---------KAAIEDILDETEAIAAALDDLRAGDLVVIFP 848 (864)
T ss_pred HH-------hcCC---------CCcEEEEcCHHHHHHHHHHhCCCCCEEEEEe
Confidence 11 1000 0124567789999999999999999999986
No 22
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=2.8e-39 Score=323.15 Aligned_cols=282 Identities=25% Similarity=0.315 Sum_probs=216.2
Q ss_pred CCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHh
Q 041678 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~ 122 (402)
.+.|++|+|+|+++. ....++|+++|||||++||+++|||+|+|+.+|.+++..+ ++++.+|+|.||+....+..
T Consensus 154 ~~~~~~V~E~ss~q~---~~~~~~p~vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~--~~~~~~V~n~dd~~~~~~~~ 228 (461)
T PRK00421 154 GNSDYFVAEADESDR---SFLKLHPDIAIVTNIDADHLDYYGDFEDLKDAFQEFAHNL--PFYGALVACGDDPELRELLP 228 (461)
T ss_pred CCCCEEEEECCCccc---hHhhcCCCEEEEccCChhhccccCCHHHHHHHHHHHHhcC--CCCCEEEEECCCHHHHHHHH
Confidence 468999999999876 2356899999999999999999999999999999998876 55689999999998887765
Q ss_pred ccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCeeE-EEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 041678 123 QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL-EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGI 201 (402)
Q Consensus 123 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L 201 (402)
.. .+++++|+.. ..+++....+.....+..|.+...+..+ .+.++++|.||++|+++|++++..+|++++.|+++|
T Consensus 229 ~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a~~~~lgv~~~~i~~~l 305 (461)
T PRK00421 229 RV--SRPVITYGFS-EDADFRAENIRQDGGGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIAVALELGIDDEAIREAL 305 (461)
T ss_pred hc--CCCEEEecCC-CCCcEEEEEEEEcCCceEEEEEECCceEEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 43 3678888863 2345544333322234455554333333 467899999999999999999999999999999999
Q ss_pred hcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhhCC-CcEEEEEccC-CCCCCCChHHHHHHHhhcCCEEEE
Q 041678 202 EEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP-RRIITVVGCA-GESDRGKRPLMTKIATDKSDVTIL 279 (402)
Q Consensus 202 ~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~~-~~~i~V~g~~-~~~~~~~~~~~~~~~~~~~d~vi~ 279 (402)
.+|++++||||++...+|+.+|+||||||+++++++++++.+++ +++++|+|.. ..+++.....+.... ..+|.+++
T Consensus 306 ~~f~~~~~R~e~~~~~~g~~~i~D~aHnp~~~~a~~~al~~~~~~~~i~~v~gp~~~~r~kd~~~~~~~~l-~~~d~vi~ 384 (461)
T PRK00421 306 ATFKGVKRRFEEKGEVGGVVLIDDYAHHPTEIKATLKAARQGYPDKRIVAVFQPHRYSRTRDLLDEFAEAL-SDADEVIL 384 (461)
T ss_pred HhCCCCCcccEEEEecCCcEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCccHHHHHHHHHHHH-HHCCEEEE
Confidence 99999999999998767889999999999999999999998654 6888999832 233333233344444 66899999
Q ss_pred ccCCCCCC------CHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecC
Q 041678 280 TSDNPMNE------DPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGK 353 (402)
Q Consensus 280 ~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gs 353 (402)
+..+++.+ ++.++.+.+. .. ...+..++++++|++.+.+.+++||+||++|+
T Consensus 385 ~~~~~~~e~~~~~~~~~~l~~~~~------------~~----------~~~~~~~~~~~~a~~~a~~~a~~gD~vlv~G~ 442 (461)
T PRK00421 385 LDIYAAGEEPIGGVDSEDLARKIK------------RG----------HRDPIFVPDLEDLAELLAEVLKPGDLVLTMGA 442 (461)
T ss_pred cCccCCCCCCCCCCCHHHHHHHHh------------cc----------CCceEEeCCHHHHHHHHHHhcCCCCEEEEECC
Confidence 87665443 3444333211 00 01244567899999999999999999999999
Q ss_pred CC
Q 041678 354 GH 355 (402)
Q Consensus 354 g~ 355 (402)
|+
T Consensus 443 g~ 444 (461)
T PRK00421 443 GD 444 (461)
T ss_pred CC
Confidence 86
No 23
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.8e-40 Score=328.11 Aligned_cols=321 Identities=20% Similarity=0.251 Sum_probs=229.2
Q ss_pred CceEEEeccceEeCCcee----cCCC--CCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCC
Q 041678 3 LRTGMLSSVSYYIHGDNK----LESP--RTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLT 76 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~~~----~~~~--~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~ 76 (402)
+.+|+|||.|.......+ .... ......+ ...+..+...+.|++|+|+|++++ . .+..++|+++|||||+
T Consensus 109 ~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni--G~~~~~~~~~~~~~~V~E~ss~~l-~-~~~~~~p~iavitNi~ 184 (438)
T PRK04663 109 PVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI--GVPALDLLEQDAELYVLELSSFQL-E-TTSSLKLKAAAFLNLS 184 (438)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEccc--CHHHHhhhcCCCCEEEEEcChhhh-c-cCcccCCCEEEEecCC
Confidence 568999999987533210 0000 0011111 111122335678999999999998 3 5677899999999999
Q ss_pred cchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeEEeecCceEE
Q 041678 77 RDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQV 156 (402)
Q Consensus 77 ~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (402)
+||+++|||+|+|+++|.++++. .+.+|+|.||+....... ..++++|+... .++.... ..+..|
T Consensus 185 ~dHld~~gs~e~y~~aK~~i~~~-----~~~~v~n~dd~~~~~~~~----~~~~~~~g~~~--~~~~~~~----~~~~~~ 249 (438)
T PRK04663 185 EDHMDRYQGMEDYRQAKLRIFDH-----AELAVVNRDDKQTYPDHA----ELQLVTFGFDQ--QDFGLAQ----HQGREW 249 (438)
T ss_pred hhhCcccCCHHHHHHHHHHHHhC-----CCEEEEeCCCHHHHhhhc----CCcEEEEecCC--CCCCeEe----cCCeEE
Confidence 99999999999999999999975 268999999997654321 35688998632 2332211 122334
Q ss_pred EEEcCCee-EEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEE-CCCCHHHHH
Q 041678 157 LVNTPHGI-LEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALS 234 (402)
Q Consensus 157 ~~~~~~~~-~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp~s~~ 234 (402)
.+...... ..+.++++|.||++|+++|++++..+|++++.|+++|.+|++++||||++...+|+++|+| |++||+|+.
T Consensus 250 ~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~lGi~~~~i~~~L~~f~g~~~R~e~v~~~~g~~~idDs~~tn~~s~~ 329 (438)
T PRK04663 250 LADNGQPVLASAELKLVGRHNVANVLVVLALLDAAGVDYRKALDALKSYTGLTHRCQVVADNHGIKWVNDSKATNVASTL 329 (438)
T ss_pred EEeCCceeeehhhcCCcchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEeeeeCCcEEEeCCCcCCHHHHH
Confidence 33221111 1467899999999999999999999999999999999999999999999987678899999 699999999
Q ss_pred HHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCC
Q 041678 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314 (402)
Q Consensus 235 ~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 314 (402)
++++.+. .++++++|+|.+.+. .....+...+... .+.+++.++.. ..+.. ...
T Consensus 330 ~Al~~~~--~~~~~i~IlGg~~~~-~~~~~l~~~~~~~-~~~vi~~G~~~-----~~~~~-~~~---------------- 383 (438)
T PRK04663 330 AALSGLE--IEGKLYLLVGGVGKG-ADFSPLKPVLATL-NLQLCCFGEDG-----DQFMP-LHP---------------- 383 (438)
T ss_pred HHHHhcc--cCCcEEEEECCccCC-CCHHHHHHHHHhh-CcEEEEECCCH-----HHHHH-Hhc----------------
Confidence 9999985 235799999987443 2333433333323 35677766431 11111 000
Q ss_pred CCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHhh
Q 041678 315 YYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYV 381 (402)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (402)
.+..++++++|++.+.+.+++||+||++ ++|.+|+. +++|.+|++.|+++++++
T Consensus 384 ---------~~~~~~~~e~av~~~~~~~~~gd~VLls-p~~as~d~---f~~~~~RG~~F~~~v~~~ 437 (438)
T PRK04663 384 ---------SARRFDTMEDAIESISPQLKSGDMVMLS-PACASFDQ---FKNFMARGDAFAQLARQY 437 (438)
T ss_pred ---------cCeecCCHHHHHHHHHHhCCCCCEEEEC-cccccccC---cCCHHHHHHHHHHHHHhh
Confidence 0224567899999999989999988875 57888988 789999999999999764
No 24
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=7.2e-40 Score=326.80 Aligned_cols=327 Identities=21% Similarity=0.240 Sum_probs=234.8
Q ss_pred CceEEEeccceEeCCce----ecCCCCCC--CCHHHHHHHHH-HH-HHCCCCEEEEecccCCcccCCccccccCEEEEeC
Q 041678 3 LRTGMLSSVSYYIHGDN----KLESPRTT--PDAVMVQNLMA-KM-LHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTN 74 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~~----~~~~~~~~--p~~~~~~~~l~-~~-~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTn 74 (402)
+.+|+|||.|......- +......+ +.. +...+. .+ ...+.|++|+|+|+++++ .. .++|+++||||
T Consensus 118 ~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gn--iG~p~~~~~~~~~~~~~~VlE~~~~~~~-~~--~~~PdiaViTN 192 (458)
T PRK01710 118 KVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGN--IGTPLFSNIEEIKEEDKVVLELSSFQLM-TM--DVSPEVAVVTN 192 (458)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCc--cChhHHHHHhhCCCCCEEEEEcCccccc-cC--CCCCCEEEEec
Confidence 57899999998754321 11111111 121 111111 11 123689999999999994 32 26999999999
Q ss_pred CCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCC--CCceEEeeEEeecC
Q 041678 75 LTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENK--KADVHPLKFELSLF 152 (402)
Q Consensus 75 I~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~ 152 (402)
|++||+++|||+|+|+++|.++++.+ ++++.+|+|.||+....+.... ..++++|+.... ..++..
T Consensus 193 I~~dHld~~~s~e~~~~aK~~i~~~~--~~~~~~v~n~Dd~~~~~~~~~~--~~~~~~fg~~~~~~~~~~~~-------- 260 (458)
T PRK01710 193 LSPNHLDVHKDMEEYIDAKKNIFKYQ--SENDLLVLNKDNEITNGMEKEA--KGDVVKFSRKEKVYEGAYLK-------- 260 (458)
T ss_pred CChhhccccCCHHHHHHHHHHHHhcC--CCCCEEEEeCCcHHHHHHHhhc--CCcEEEEeCCCCCCCceEEe--------
Confidence 99999999999999999999999876 5678999999999887765432 346788986321 111110
Q ss_pred ceEEEEEcCCee--EEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEE-CCCC
Q 041678 153 ETQVLVNTPHGI--LEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHT 229 (402)
Q Consensus 153 ~~~~~~~~~~~~--~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahn 229 (402)
...+.+. +.. ..+.++++|.||++|+++|++++..+ ++.+.|.++|++|++++||||.+...+|+++|+| ||||
T Consensus 261 ~~~~~~~--~~~~~~~~~l~l~G~hnv~NalaA~a~a~~~-i~~~~i~~~L~~f~~~~~R~e~~~~~~g~~~i~Dsy~~n 337 (458)
T PRK01710 261 NGKLYIR--GKEVCKKDDIKLKGMHNVENLLAAFCAVNDD-VSIESMKKVATTFSGVEHRCEFVREINGVKYYNDSIASS 337 (458)
T ss_pred CCEEEEc--CceEEEhhhcCCccHhHHHHHHHHHHHHHhC-CCHHHHHHHHHhCCCCCcceEEEEEECCEEEecccccCC
Confidence 0111111 111 13568999999999999999999987 9999999999999999999999976678999999 8999
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhh
Q 041678 230 PDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLK 309 (402)
Q Consensus 230 p~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 309 (402)
|+|+.++++++.. ++++|+|+ .+++..|..+...+. ...+.+++.++.. ..+...+....+ .
T Consensus 338 p~s~~~al~~~~~----~~i~IlGg-~~~~~~~~~l~~~~~-~~~~~vi~~G~~~-----~~~~~~~~~~~~-------~ 399 (458)
T PRK01710 338 PTRTLAGLKAFEK----PVILIAGG-YDKKIPFEPLAEEGY-EKIKTLILMGATK-----NKIKEAFEKVIS-------E 399 (458)
T ss_pred HHHHHHHHHhCCC----CEEEEeCC-cCCCCCHHHHHHHHH-hhccEEEEECCCH-----HHHHHHHhhccc-------c
Confidence 9999999998842 58899985 466777766655544 5588888887642 122221100000 0
Q ss_pred cCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHh
Q 041678 310 YGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQY 380 (402)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (402)
.+. ...+..++++++|++.+.+.+++||+||+++ +|+||++ +++|.+|++.|++++++
T Consensus 400 ~~~---------~~~~~~~~~~~~a~~~~~~~~~~gd~VLlsp-a~aS~d~---f~~~~~RG~~F~~~v~~ 457 (458)
T PRK01710 400 KGI---------DIPIVIVNSLEEAVKVAKEIAEKGDIVTLSP-ACASFDM---FPNFEIRGNKFKEIVNN 457 (458)
T ss_pred cCC---------CcceEEcCCHHHHHHHHHHhCCCCCEEEeCh-hhccccc---ccCHHHHHHHHHHHHHh
Confidence 000 0124557889999999999999999999975 7889998 78889999999999875
No 25
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2e-40 Score=332.43 Aligned_cols=345 Identities=17% Similarity=0.191 Sum_probs=225.3
Q ss_pred CceEEEeccceEeCCce----ecCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCC
Q 041678 3 LRTGMLSSVSYYIHGDN----KLESPRT--TPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLT 76 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~~----~~~~~~~--~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~ 76 (402)
+.+|+|||.|....... +...... +... +...+......+.|++|+|+|++++ +.+..++|+++|||||+
T Consensus 118 ~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn--iG~p~~~~~~~~~~~~VlE~ss~ql--~~~~~~~P~vaVITNI~ 193 (488)
T PRK03369 118 RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN--IGSPVLDVLDEPAELLAVELSSFQL--HWAPSLRPEAGAVLNIA 193 (488)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC--CchHHHHhccCCCCEEEEECChHHh--CcccccCCCEEEEcCCC
Confidence 36899999998754321 1111000 1111 1111111225678999999999988 35678899999999999
Q ss_pred cchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCC-CCceEEeeEEeecCceE
Q 041678 77 RDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENK-KADVHPLKFELSLFETQ 155 (402)
Q Consensus 77 ~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~ 155 (402)
+||+++|||+|+|+.+|++||+. +.+|+|.||+....+..... ....+.|+.... ..++.... +..
T Consensus 194 ~DHLd~~gt~e~ya~aK~~I~~~------~~~Vln~dd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~ 260 (488)
T PRK03369 194 EDHLDWHGTMAAYAAAKARALTG------RVAVVGLDDSRAAALLDTAP-APVRVGFRLGEPAAGELGVRD------GHL 260 (488)
T ss_pred HHHhhhcCCHHHHHHHHHHHhcC------CEEEEECCCHHHHHHHHhCC-CcEEEEEeCCCCCcCCceEEC------CEE
Confidence 99999999999999999999962 78999999998877654321 112334432111 11221110 000
Q ss_pred EEEEc-CC-eeE-EEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEE-CCCCHH
Q 041678 156 VLVNT-PH-GIL-EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPD 231 (402)
Q Consensus 156 ~~~~~-~~-~~~-~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp~ 231 (402)
+.... .+ ... .+.++++|.||++|+++|++++..+|++.+.|+++|++|++++||||++...+++.+|+| |||||+
T Consensus 261 ~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAla~a~~lGi~~e~i~~~L~~f~~~~gR~E~v~~~~gv~iIDDS~AhNp~ 340 (488)
T PRK03369 261 VDRAFADDLRLAPVASIPVPGPVGVLDALAAAALARAVGVPAGAIADALASFRVGRHRAEVVAVADGITYVDDSKATNPH 340 (488)
T ss_pred EEeccCCccceechhhcCCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCccEEEEcCCCEEEEECCCCCCHH
Confidence 00000 00 011 246789999999999999999999999999999999999999999999987778889999 799999
Q ss_pred HHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhccc-chhhhhhhc
Q 041678 232 ALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG-WTMQEYLKY 310 (402)
Q Consensus 232 s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~ 310 (402)
|++++++.+ +++++|+|++ +|+.....++..+. ...+.+++.+.. ...+.+.+.+... ..+... ..
T Consensus 341 s~~aal~~~-----~~iilI~GG~-~k~~d~~~l~~~l~-~~~~~vi~iG~~-----~~~i~~~l~~~~~~~~~~~~-~~ 407 (488)
T PRK03369 341 AARASILAY-----PRVVWIAGGL-LKGASVDALVAEMA-SRLVGAVLIGRD-----RAVVAEALSRHAPDVPVVQV-VT 407 (488)
T ss_pred HHHHHHHhC-----CCeEEEecCc-CCCCCHHHHHHHHh-hheeEEEEEcCC-----HHHHHHHHHhcCCCCCEEEe-cc
Confidence 999999876 2589999643 34555555555443 456777765543 1222222211100 000000 00
Q ss_pred CCCCCC--CCCCCCCceeecc----------cHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHH
Q 041678 311 GENDYY--PPLPNGHRLFLHD----------IRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREAL 378 (402)
Q Consensus 311 ~~~~~~--~~~~~~~~~~~~~----------~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~ 378 (402)
..+... .+......+...+ ++++|++.|.+.+++||+||++ ++|.||++ +++|-+|++.|++++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~vLlS-PacaSfd~---f~~y~~RG~~F~~~v 483 (488)
T PRK03369 408 GEDAGMPATPEVPVACVTDVADDDGETLGDAVMAAAVAAARRLARPGDTVLLA-PAGASFDQ---FTGYGDRGDAFAAAV 483 (488)
T ss_pred ccccccccccccccccccccccccccccchhhHHHHHHHHHHhCCCCCEEEeC-hhhccccc---ccCHHHHHHHHHHHH
Confidence 000000 0000000122222 5999999999999999999986 68999999 789999999999998
Q ss_pred Hhh
Q 041678 379 QYV 381 (402)
Q Consensus 379 ~~~ 381 (402)
+.+
T Consensus 484 ~~~ 486 (488)
T PRK03369 484 RAA 486 (488)
T ss_pred HHh
Confidence 764
No 26
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=2.1e-40 Score=352.03 Aligned_cols=324 Identities=14% Similarity=0.113 Sum_probs=237.4
Q ss_pred CCceEEEeccceEeCCce----ecCC--CCCCCCHH--HHHHHHHHH-HHCCCCEEEEecccCCcc--cCCccccccCEE
Q 041678 2 GLRTGMLSSVSYYIHGDN----KLES--PRTTPDAV--MVQNLMAKM-LHNGTEAVVMEASSHGLA--LGRCSEVDFDIA 70 (402)
Q Consensus 2 g~~~g~~~t~g~~~~~~~----~~~~--~~~~p~~~--~~~~~l~~~-~~~~~d~~VlE~g~~g~~--~d~~~~~~p~ia 70 (402)
.+.+|+|||.|......- +... ...++..+ .+.+.+..+ ...++|++|+|+|+++.+ ......++|+++
T Consensus 107 ~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~~~~~~n~~ig~p~~~~~~~~~~~~~V~E~s~s~~~~~~~l~~~~~Pdia 186 (822)
T PRK11930 107 IPVIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQLNEEHELGIFEAGISQPGEMEALQKIIKPTIG 186 (822)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHhccCcEecCCcccCcchhHHHHHhcCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEE
Confidence 357899999997743211 1111 01112222 122222222 256899999999998874 223445899999
Q ss_pred EEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeEEee
Q 041678 71 VFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELS 150 (402)
Q Consensus 71 ViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (402)
|||||++||+++|||+|+|+.+|++||+. .+.+|+|.||+....+........++++|+.....+++....+...
T Consensus 187 ViTNI~~dHLd~~gt~e~y~~aK~~i~~~-----~~~~vin~Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~i~~~ 261 (822)
T PRK11930 187 ILTNIGGAHQENFRSIKQKIMEKLKLFKD-----CDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPLYIPFVEKK 261 (822)
T ss_pred EEcCccHHHHhhcCCHHHHHHHHHHHhcC-----CCEEEEeCCCHHHHHHHHhhhcCCcEEEEcCCCCCCcEEEEEEEEc
Confidence 99999999999999999999999999974 3789999999988776543222346788986332456766666555
Q ss_pred cCceEEEEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEE-CCCC
Q 041678 151 LFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHT 229 (402)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahn 229 (402)
..+..|.+...++...+.+|++|.||++|+++|++++..+|++.+.|.++|++|++++||||++...+|+++|+| ||||
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~~~~g~~vIdDSyn~n 341 (822)
T PRK11930 262 EDHTVISYTYKGEDFHFEIPFIDDASIENLIHCIAVLLYLGYSADQIQERMARLEPVAMRLEVKEGINNCTLINDSYNSD 341 (822)
T ss_pred CCceEEEEEeCCceEEEEecCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCeeEEEEcCCCcEEEECCCCCC
Confidence 555667665555456788999999999999999999999999999999999999999999999986678999999 8999
Q ss_pred HHHHHHHHHHHhhhCC-CcEEEEEccCCCCCC----CChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchh
Q 041678 230 PDALSRLLDSVRELAP-RRIITVVGCAGESDR----GKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTM 304 (402)
Q Consensus 230 p~s~~~~l~~l~~~~~-~~~i~V~g~~~~~~~----~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~ 304 (402)
|+|++++|+++++..+ +++++|+|.+.+... .++.+...+....++.+++.++.. .++.. ...
T Consensus 342 P~s~~aaL~~l~~~~~~~~~ilIlG~m~elG~~~~~~~~~l~~~l~~~~i~~vi~~G~~~-----~~~~~----~~~--- 409 (822)
T PRK11930 342 LQSLDIALDFLNRRSQSKKKTLILSDILQSGQSPEELYRKVAQLISKRGIDRLIGIGEEI-----SSEAS----KFE--- 409 (822)
T ss_pred HHHHHHHHHHHHhcccCCCEEEEECChHhcCchHHHHHHHHHHHHHHcCCCEEEEECHHH-----HHHHH----hcC---
Confidence 9999999999987653 578999998876443 234444444546688998876531 11111 000
Q ss_pred hhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceE
Q 041678 305 QEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359 (402)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~ 359 (402)
. ..+.++++.+++++.+.+.+++||+||++||+...+.
T Consensus 410 ----------------~-~~~~~~~~~e~a~~~l~~~~~~gDvVLlKGSr~~~le 447 (822)
T PRK11930 410 ----------------G-TEKEFFKTTEAFLKSFAFLKFRNELILVKGARKFEFE 447 (822)
T ss_pred ----------------c-cccEEECCHHHHHHHHHHhcCCCCEEEEEcCCCCCHH
Confidence 0 1134568899999999999999999999999764444
No 27
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.4e-39 Score=322.58 Aligned_cols=293 Identities=21% Similarity=0.246 Sum_probs=212.8
Q ss_pred HCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHH
Q 041678 42 HNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121 (402)
Q Consensus 42 ~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~ 121 (402)
..+.|++|+|+|++++ +.+..++|+++|||||++||+++|+|+|+|+++|.++++. +.+|+|.||+....+.
T Consensus 167 ~~~~~~~V~E~ss~~l--~~~~~~~pdiaViTNi~~dHLd~~~s~e~y~~aK~~l~~~------~~~vln~Dd~~~~~~~ 238 (473)
T PRK00141 167 QPRIDVLVAELSSFQL--HWSPTLTPDVGVVLNLAEDHIDWHGSMRDYAADKAKVLRG------PVAVIGADDEYVVQLT 238 (473)
T ss_pred CCCCCEEEEecCCccc--ccCcccCCCEEEEcCCChhhccccCCHHHHHHHHHHHhhC------CEEEEECCCHHHHHHH
Confidence 3568999999999988 4567899999999999999999999999999999999953 5899999999888775
Q ss_pred hccCCCCCEEEEeccCCC-Cc--eEEeeEEeecCceEEEEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHH
Q 041678 122 AQGNPDVPVVTFAMENKK-AD--VHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIV 198 (402)
Q Consensus 122 ~~~~~~~~v~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~ 198 (402)
... ...++++|+..... .+ +....+.....+..+.+. ..+.++++|.||++|+++|++++..+|++.+.++
T Consensus 239 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~G~hn~~Na~aA~a~~~~lgi~~~~i~ 312 (473)
T PRK00141 239 SAA-DLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLA-----SAEGISPAGPAGVLDALAAAAVARSQGVAPEAIA 312 (473)
T ss_pred hhc-CCCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEe-----ehhhcCCCcHhHHHHHHHHHHHHHHcCCCHHHHH
Confidence 432 13467889864321 11 211111111111112111 0235789999999999999999999999999999
Q ss_pred HHhhcCCCCCCceeeeecCCCeEEEEEC-CCCHHHHHHHHHHHhhhCCCcEEEEEc-cCCCCCCCChHHHHHHHhhcCCE
Q 041678 199 RGIEEVDAVPGRCELIDEEQAFGVIVDY-AHTPDALSRLLDSVRELAPRRIITVVG-CAGESDRGKRPLMTKIATDKSDV 276 (402)
Q Consensus 199 ~~L~~~~~~~gR~e~i~~~~g~~vi~D~-ahnp~s~~~~l~~l~~~~~~~~i~V~g-~~~~~~~~~~~~~~~~~~~~~d~ 276 (402)
++|.+|++++||||++...++..+|+|+ ||||+|+++++++++ ++++|+| .+.+++ .++++..+.....++
T Consensus 313 ~~l~~~~~~~~R~e~~~~~~~~~iiDdsyahNp~s~~~~l~~l~-----~~~~i~gG~~kdkd--~~~~~~~l~~~~~~~ 385 (473)
T PRK00141 313 RALSSFEVAGHRGQVVAEHGGVTWIDNSKATNPHAADAALAGHE-----SVVWVAGGQLKGAD--IDDLIRTHAPRIKAA 385 (473)
T ss_pred HHHhhCCCCCCceEEEEEeCCEEEEEcCCCCCHHHHHHHHHhcC-----CEEEEecCccCCCC--hHHHHHHHHhhccEE
Confidence 9999998888899999765677888884 999999999999983 5788894 445544 466777766554444
Q ss_pred EEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceee----cccHHHHHHHHHHhCCCCcEEEEec
Q 041678 277 TILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFL----HDIRRVAVRCAVAMGEEGDMVVVAG 352 (402)
Q Consensus 277 vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~a~~~~~~gD~VLv~G 352 (402)
+++ +. +| ..+.+++.+.+.. . ...... .+++++|++.|.+.+++||+||++
T Consensus 386 ~~~-~~-~r----~~~~~~l~~~~~~-----------~-------~~~~~~~~~~~~~l~~Av~~a~~~a~~gd~Vlls- 440 (473)
T PRK00141 386 VVL-GV-DR----AEIVAALAEHAPD-----------A-------PVTVTDSTDPEEAMEEAVSAAVSLAEPGDTVLLA- 440 (473)
T ss_pred EEE-CC-CH----HHHHHHHHhcCCC-----------C-------cEEEecCcccccCHHHHHHHHHHhCCCCCEEEeC-
Confidence 444 32 22 2222322221110 0 001111 235699999999999999998886
Q ss_pred CCCcceEEeCCEeeecCcHHHHHHHHHhhHH
Q 041678 353 KGHETYQIEGDKKEFFDDREESREALQYVDE 383 (402)
Q Consensus 353 sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (402)
++|+||++ +++|-+|++.|+++++++.+
T Consensus 441 Pa~aS~d~---f~~~~~RG~~F~~~v~~l~~ 468 (473)
T PRK00141 441 PAAASLDM---YTGMGQRGDLFAEAARRTIR 468 (473)
T ss_pred hhhhcccc---ccCHHHHHHHHHHHHHHHHH
Confidence 68999999 78889999999999987654
No 28
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.9e-39 Score=323.28 Aligned_cols=285 Identities=24% Similarity=0.314 Sum_probs=215.9
Q ss_pred CCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHh
Q 041678 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~ 122 (402)
.+.|++|+|+|++++ +.++.++|+++|||||++||+++|+|+|+|+.+|++|++. ++.+|+|.||+....+..
T Consensus 159 ~~~d~~VlE~~~~~l--~~~~~~~p~iaviTNI~~DHld~~~t~e~~~~~K~~i~~~-----~~~~i~n~dd~~~~~~~~ 231 (445)
T PRK04308 159 KKADVWVLELSSFQL--ENTESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG-----DGVQVLNADDAFCRAMKR 231 (445)
T ss_pred CCCcEEEEEeChHHh--CcCcccCCCEEEEecCChHHhcccCCHHHHHHHHHHHhcC-----CCEEEEeCCcHHHHHHhh
Confidence 468999999999876 4588899999999999999999999999999999999953 478999999998776643
Q ss_pred ccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCeeE-EEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 041678 123 QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL-EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGI 201 (402)
Q Consensus 123 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L 201 (402)
. ..++++|+... ..++.... ....+.+. ..... .+.++++|.||++|+++|++++..+|++++.|+++|
T Consensus 232 ~---~~~v~~~~~~~-~~d~~~~~-----~~~~~~~~-~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L 301 (445)
T PRK04308 232 A---GREVKWFSLEH-EADFWLER-----ETGRLKQG-NEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHV 301 (445)
T ss_pred c---CCcEEEecCCC-CCceeEec-----cCCEEEEc-CceeeehhccCCcChhhHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 45788888632 23433211 01112221 11111 356899999999999999999999999999999999
Q ss_pred hcCCCCCCceeeeecCCCeEEEEEC-CCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEc
Q 041678 202 EEVDAVPGRCELIDEEQAFGVIVDY-AHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILT 280 (402)
Q Consensus 202 ~~~~~~~gR~e~i~~~~g~~vi~D~-ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~ 280 (402)
.+|+++|||||++...+++.+|+|+ +|||+|+.++++.+. +++++|+|.+. ++.....+. ......+|.++++
T Consensus 302 ~~f~~~~~R~e~~~~~~~~~~iDDs~~~n~~s~~~al~~~~----~~~i~IlGg~~-~~~~~~~~~-~~l~~~~~~vil~ 375 (445)
T PRK04308 302 KTFQGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQ----NPLFVILGGMG-KGQDFTPLR-DALAGKAKGVFLI 375 (445)
T ss_pred hhCCCCCCceEEEEeeCCeEEEEcCCCCCHHHHHHHHHhCC----CCEEEEeCCCC-CCCCHHHHH-HHHHHhCcEEEEE
Confidence 9999999999999876788999995 999999999999983 46899998653 223333444 4445567888887
Q ss_pred cCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEE
Q 041678 281 SDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360 (402)
Q Consensus 281 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~ 360 (402)
+... ..+...+ ... + ..+..++++++|++.+.+.+++||+||++ +++.||++
T Consensus 376 G~~~-----~~l~~~l-~~~----------~-----------~~~~~~~~~e~a~~~~~~~~~~~d~VL~s-p~~~S~d~ 427 (445)
T PRK04308 376 GVDA-----PQIRRDL-DGC----------G-----------LNLTDCATLEEAVQRAYAQAEAGDIVLLS-PACASFDM 427 (445)
T ss_pred CCCH-----HHHHHHH-Hhc----------C-----------CCeEecCCHHHHHHHHHHhCCCCCEEEEC-hhhhhhcc
Confidence 6531 2222211 100 0 01345678999999999999999999985 35667998
Q ss_pred eCCEeeecCcHHHHHHHHHhh
Q 041678 361 EGDKKEFFDDREESREALQYV 381 (402)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~ 381 (402)
+++|.+|++.|+++++++
T Consensus 428 ---f~~~~~Rg~~F~~~v~~~ 445 (445)
T PRK04308 428 ---FKGYAHRSEVFIEAFKAL 445 (445)
T ss_pred ---ccCHHHHHHHHHHHHHhC
Confidence 789999999999999863
No 29
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.4e-39 Score=323.09 Aligned_cols=295 Identities=22% Similarity=0.250 Sum_probs=213.9
Q ss_pred HCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHH
Q 041678 42 HNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121 (402)
Q Consensus 42 ~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~ 121 (402)
..+.|++|+|+|++++ +.++.++|+++|||||++||+++|||+|+|+.+|++|++. ++.+|+|.||+.+..+.
T Consensus 159 ~~~~d~~VlE~~s~~l--~~~~~~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~~-----~~~~Vln~dd~~~~~~~ 231 (459)
T PRK02705 159 AQKPDWIVAELSSYQI--ESSPELAPKIGIWTTFTPDHLERHGTLENYFAIKASLLER-----SEIRILNGDDPYLRQHR 231 (459)
T ss_pred CCCCCEEEEEcccccc--ccCcccCCCEEEEecCChhhhcccCCHHHHHHHHHHHhcc-----CCEEEEECCCHHHHHHH
Confidence 4578999999999876 4556689999999999999999999999999999999964 47899999999887765
Q ss_pred hccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCeeEE-EEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 041678 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILE-ISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200 (402)
Q Consensus 122 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~ 200 (402)
... ...++|+......++......+...+ +.+......+. ..++++|.||++|+++|++++..+|++++.|+++
T Consensus 232 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgv~~~~i~~~ 306 (459)
T PRK02705 232 SSW---PKGYWTSTQGKASLLGQADGWILEEG--WVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARLAGLSAEAIAEA 306 (459)
T ss_pred hcC---CceEEeccCCccccccccceeEecCC--EEEECCcceeeHHHcCCccHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 432 23466654221111111111111111 11111111122 2578999999999999999999999999999999
Q ss_pred hhcCCCCCCceeeeecCCCeEEEEE-CCCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEE
Q 041678 201 IEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTIL 279 (402)
Q Consensus 201 L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~ 279 (402)
|.+|++++||||++...+++.||+| |||||+|++++++.++ +++++|+|.+.. +.....++..+. ...+.+++
T Consensus 307 L~~f~~~~gR~e~~~~~~~~~ii~Ds~a~N~~s~~~al~~l~----~~~i~IlGg~~~-~~d~~~~~~~l~-~~~~~vi~ 380 (459)
T PRK02705 307 LRSFPGVPHRLERIGTINGIDFINDSKATNYDAAEVGLKAVP----GPVILIAGGEAK-QGDDSAWLKQIK-AKAAAVLL 380 (459)
T ss_pred HHhCCCCCCceEEEEeeCCcEEEEeCCCCCHHHHHHHHHhCC----CCeEEEecCccC-CCCHHHHHHHHH-hheeEEEE
Confidence 9999999999999986668899999 7999999999999984 468899986542 223344554443 56788877
Q ss_pred ccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCC--cEEEEecCCCcc
Q 041678 280 TSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEG--DMVVVAGKGHET 357 (402)
Q Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~g--D~VLv~Gsg~~~ 357 (402)
++.. ...+...+.. . + + ...+..++++++|++.+.+.+++| |+||++ ++|.|
T Consensus 381 ~g~~-----~~~l~~~l~~-~----------~----~-----~~~~~~~~~~~eA~~~a~~~a~~g~~~~vlls-p~~as 434 (459)
T PRK02705 381 FGEA-----APTLAQRLQE-S----------G----Y-----TGEYEIVETLDEAVPRAFELAKELQAKSVLLS-PACAS 434 (459)
T ss_pred ECCC-----HHHHHHHHHh-c----------C----C-----CcceEEcCCHHHHHHHHHHHhCCCCCCEEEec-hhhhh
Confidence 7532 2222221110 0 0 0 011445678999999999999999 688885 57888
Q ss_pred eEEeCCEeeecCcHHHHHHHHHhhHH
Q 041678 358 YQIEGDKKEFFDDREESREALQYVDE 383 (402)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (402)
|+. +++|.+|++.|+++++++..
T Consensus 435 ~d~---f~~~~~rg~~F~~~v~~~~~ 457 (459)
T PRK02705 435 FDQ---YKNFEERGDHFRQLIQALLK 457 (459)
T ss_pred hcc---ccCHHHHHHHHHHHHHHHhh
Confidence 997 78889999999999988643
No 30
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6e-39 Score=320.32 Aligned_cols=288 Identities=22% Similarity=0.252 Sum_probs=217.4
Q ss_pred CCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHh
Q 041678 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~ 122 (402)
.+.|++|+|+|++++. .+..++|+++|||||++||+++|||+|+|+.+|++|++.. ++++.+|+|.||+....+..
T Consensus 155 ~~~~~~V~E~ss~~~~--~~~~~~P~iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~--~~~~~~v~n~dd~~~~~~~~ 230 (447)
T PRK02472 155 TADDTLVMELSSFQLM--GIETFRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQ--TEDDYLVINFDQEEVKELAK 230 (447)
T ss_pred CCCCEEEEEcCchhhC--cccccCCCEEEEeccChhhhcccCCHHHHHHHHHHHHhcC--CCCCEEEEeCCcHHHHHHHh
Confidence 3679999999999873 4778899999999999999999999999999999999876 55688999999998776654
Q ss_pred ccCCCCCEEEEeccCCC-CceEEeeEEeecCceEEEEEcCCeeE-EEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 041678 123 QGNPDVPVVTFAMENKK-ADVHPLKFELSLFETQVLVNTPHGIL-EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200 (402)
Q Consensus 123 ~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~ 200 (402)
.. ..++++|+..... .++.. . .+ .+.+. ....+ .+.++++|.||++|+++|++++..+|++.+.|+++
T Consensus 231 ~~--~~~~~~~~~~~~~~~~~~~-----~-~~-~~~~~-~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~ 300 (447)
T PRK02472 231 QT--KATVVPFSTTEKVEDGAYI-----K-DG-ALYFK-GEKIMAADDIVLPGSHNLENALAAIAAAKLLGVSNEAIREV 300 (447)
T ss_pred hc--CceEEEeecCCCCcCceEE-----E-CC-EEEEC-CceEEehhhcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 32 3467888753211 11111 0 11 12221 11112 23579999999999999999999999999999999
Q ss_pred hhcCCCCCCceeeeecCCCeEEEEEC-CCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEE
Q 041678 201 IEEVDAVPGRCELIDEEQAFGVIVDY-AHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTIL 279 (402)
Q Consensus 201 L~~~~~~~gR~e~i~~~~g~~vi~D~-ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~ 279 (402)
|.+|++++||||++...+++++|+|+ +|||+|+..+++.+ .+++++|+|+ .+++..+.++...+. . .|.+++
T Consensus 301 L~~f~~~~~R~e~~~~~~g~~vi~D~~a~N~~s~~~al~~~----~~~ii~I~g~-~~~~~~~~~l~~~l~-~-~~~v~~ 373 (447)
T PRK02472 301 LSTFSGVKHRLQYVGTIDGRKFYNDSKATNILATQKALSGF----NQPVVLLAGG-LDRGNEFDELVPYLK-N-VKAMVV 373 (447)
T ss_pred HHhCCCCCCcceEEEEECCeEEEECCCCCCHHHHHHHHHhC----CCCEEEEECC-CCCCCCHHHHHHHHh-c-cCEEEE
Confidence 99999999999999765689999996 99999999998876 2578999985 344555555555444 3 788887
Q ss_pred ccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceE
Q 041678 280 TSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359 (402)
Q Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~ 359 (402)
.+.. ...+.+.+ ... ...+..++++++|++.+.+.+++||+||++| ++.+|+
T Consensus 374 ~G~~-----~~~l~~~~-~~~---------------------~~~~~~~~~~~~a~~~~~~~~~~~d~VLls~-a~~s~d 425 (447)
T PRK02472 374 FGET-----AEKLARAA-EKA---------------------GITVVEADNVEDAVPKAYELSEPGDVILLSP-ACASWD 425 (447)
T ss_pred ECCC-----HHHHHHHH-HhC---------------------CCceEEcCCHHHHHHHHHHhCCCCCEEEeCc-cccccc
Confidence 7542 22332211 100 0123456789999999988899999999976 567888
Q ss_pred EeCCEeeecCcHHHHHHHHHhhH
Q 041678 360 IEGDKKEFFDDREESREALQYVD 382 (402)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~ 382 (402)
+ +++|.+|++.|+++++.+.
T Consensus 426 ~---f~~~~~Rg~~F~~~v~~~~ 445 (447)
T PRK02472 426 Q---YKTFEERGDEFIKAVEELK 445 (447)
T ss_pred c---ccCHHHHHHHHHHHHHHhc
Confidence 8 7888899999999998764
No 31
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.1e-38 Score=317.45 Aligned_cols=286 Identities=23% Similarity=0.230 Sum_probs=215.5
Q ss_pred HHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccC-CCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHH
Q 041678 41 LHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFH-GTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATS 119 (402)
Q Consensus 41 ~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~-gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~ 119 (402)
...+.|++|+|+|++++ +.++.++|+++|||||++||+++| +|+|+|+.+|.+|++. .+.+|+|.||+....
T Consensus 148 ~~~~~~~~V~E~ss~~l--~~~~~~~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~-----~~~~v~n~dd~~~~~ 220 (438)
T PRK03806 148 LDQECELYVLELSSFQL--ETTSSLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN-----AKVCVVNADDALTMP 220 (438)
T ss_pred hccCCCEEEEEccchhh--ccCcccCCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhC-----CCeEEEeCCCHHHHH
Confidence 45678999999999987 468889999999999999999999 5999999999999974 368999999998776
Q ss_pred HHhccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCee-EEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHH
Q 041678 120 FIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI-LEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIV 198 (402)
Q Consensus 120 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~ 198 (402)
+... ..++++|+... .++.... ..+..+.+...... ..++++++|.||++|+++|++++..+|++.+.|+
T Consensus 221 ~~~~---~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~lgi~~~~i~ 291 (438)
T PRK03806 221 IRGA---DKRCVSFGVNM--GDYHLNR----QQGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALALADAVGIPRASSL 291 (438)
T ss_pred HhcC---CceEEEEecCC--CceEEEe----cCCeEEEEecCceeeehhhcCCcccccHHHHHHHHHHHHHcCCCHHHHH
Confidence 5432 34677887532 3333221 11222222221111 1356899999999999999999999999999999
Q ss_pred HHhhcCCCCCCceeeeecCCCeEEEEE-CCCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEE
Q 041678 199 RGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVT 277 (402)
Q Consensus 199 ~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~v 277 (402)
++|.+|++++||||++...+++.+|+| |||||+|++++++.++. ++++++|+|++ +++.....+...+... ...+
T Consensus 292 ~~L~~f~~~~gR~E~v~~~~~~~~i~Ds~a~n~~a~~~al~~l~~--~~~~i~IlG~~-~k~~d~~~l~~~l~~~-~~~v 367 (438)
T PRK03806 292 KALTTFTGLPHRFQLVLEHNGVRWINDSKATNVGSTEAALNGLHV--DGTLHLLLGGD-GKSADFSPLARYLNGD-NIRL 367 (438)
T ss_pred HHHHhCCCCCCeEEEEEeeCCEEEEEcCCCCCHHHHHHHHHhCcc--CCcEEEEECCc-CCCCCHHHHHHHHHhh-CcEE
Confidence 999999999999999986668889988 79999999999999962 35789999974 3444433444444333 3355
Q ss_pred EEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcc
Q 041678 278 ILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357 (402)
Q Consensus 278 i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~ 357 (402)
++.+.. ...+.+. .. ..+..++++++|++.+.+.+++||+||++ ++|.|
T Consensus 368 ~~~g~~-----~~~l~~~-~~------------------------~~~~~~~~~~~av~~a~~~~~~gd~VLls-p~~as 416 (438)
T PRK03806 368 YCFGRD-----GAQLAAL-RP------------------------EVSQLTETMEQAMRLIAPRVQPGDMVLLS-PACAS 416 (438)
T ss_pred EEECCC-----HHHHHHH-hh------------------------cceEecCCHHHHHHHHHHhCCCCCEEEEC-hhhhh
Confidence 555442 2222211 10 01234678899999999999999999986 47888
Q ss_pred eEEeCCEeeecCcHHHHHHHHHh
Q 041678 358 YQIEGDKKEFFDDREESREALQY 380 (402)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~ 380 (402)
|+. +++|-+|++.|+++++.
T Consensus 417 ~d~---f~~~~~RG~~F~~~v~~ 436 (438)
T PRK03806 417 LDQ---FKNFEQRGNEFARLAKE 436 (438)
T ss_pred hcC---ccCHHHHHHHHHHHHHh
Confidence 997 78999999999999875
No 32
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2e-38 Score=316.84 Aligned_cols=329 Identities=20% Similarity=0.246 Sum_probs=230.1
Q ss_pred CceEEEeccceEeCCce----ecCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCC
Q 041678 3 LRTGMLSSVSYYIHGDN----KLESPRT--TPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLT 76 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~~----~~~~~~~--~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~ 76 (402)
+.+|+|||.|....... +.....+ ....+-+..........+.|++|+|+|+++++ ....++|+++|||||+
T Consensus 109 ~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~ig~~~~~~~~~~~~~~~~v~E~~~~~~~--~~~~~~P~i~VITnI~ 186 (450)
T PRK14106 109 PIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYPLIDAVEEYGEDDIIVAEVSSFQLE--TIKEFKPKVGCILNIT 186 (450)
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcccHHHHHHHhcCCCCCEEEEEcChhhhc--cccccCCCEEEEecCC
Confidence 57899999997743321 1111111 11111111110111234689999999998773 4577899999999999
Q ss_pred cchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCC-ceEEeeEEeecCceE
Q 041678 77 RDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKA-DVHPLKFELSLFETQ 155 (402)
Q Consensus 77 ~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~ 155 (402)
.||+++|||+|+|+.+|++|++.. ++.+.+++|.|++....+.+.. ++++++|+.+.... ++.. . ...
T Consensus 187 ~dHl~~~gt~e~ia~~K~~i~~~~--~~~~~~vln~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~--~~~ 255 (450)
T PRK14106 187 PDHLDRHKTMENYIKAKARIFENQ--RPSDYTVLNYDDPRTRSLAKKA--KARVIFFSRKSLLEEGVFV-----K--NGK 255 (450)
T ss_pred cchhcccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHhhc--CceEEEEecCccCcCceEE-----E--CCE
Confidence 999999999999999999999876 5678899999998877665432 56788888632111 1110 0 111
Q ss_pred EEEEcCCee---E-EEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEE-CCCCH
Q 041678 156 VLVNTPHGI---L-EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTP 230 (402)
Q Consensus 156 ~~~~~~~~~---~-~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp 230 (402)
+.+...+.. . .+.++++|.||++|+++|++++..+|++.+.++++|.+|++|+||||.+...++..+|+| |||||
T Consensus 256 ~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAia~~~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~~~~vi~D~~ahNP 335 (450)
T PRK14106 256 IVISLGGKEEEVIDIDEIFIPGEHNLENALAATAAAYLLGISPDVIANTLKTFKGVEHRIEFVAEINGVKFINDSKGTNP 335 (450)
T ss_pred EEEecCCCcceEEEHHHcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcceEEEeeECCEEEEeCCCccCH
Confidence 111111111 1 136799999999999999999999999999999999999999999999975567889999 79999
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhc
Q 041678 231 DALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKY 310 (402)
Q Consensus 231 ~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 310 (402)
+|+++++++++ +++++|+|.+ +++..+++++..+. ...|.+++++. ++.++.+.... .+
T Consensus 336 ~s~~~~l~~l~----~~~i~v~g~~-~~~k~~~~~~~~l~-~~~~~vi~~g~-----~~~~l~~~~~~-~~--------- 394 (450)
T PRK14106 336 DAAIKALEAYE----TPIVLIAGGY-DKGSDFDEFAKAFK-EKVKKLILLGE-----TAQEIAEAARK-YG--------- 394 (450)
T ss_pred HHHHHHHHhCC----CCeEEEeCCc-CCCCCHHHHHHHHH-hhCCEEEEEcC-----CHHHHHHHHhh-CC---------
Confidence 99999999984 3578888754 34445455555543 45787777743 33444332110 00
Q ss_pred CCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHh
Q 041678 311 GENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQY 380 (402)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (402)
..++..+++.++|++.+.+.++++|+||++|+++ ++++ ++++.+++++||+++++
T Consensus 395 -----------~~~~~~~~~~~~a~~~~~~~~~~~d~ilv~~~~~-~~~~---~~~~~~~~~~~~~~~~~ 449 (450)
T PRK14106 395 -----------FDNILFAETLEEAVKKAYEIAKPGDVVLLSPACA-SWDM---FKNFEERGRLFKELVLE 449 (450)
T ss_pred -----------CCcEEEeCCHHHHHHHHHHhCCCCCEEEEChhhh-cccc---ccCHHHHHHHHHHHHHh
Confidence 0124456789999999998889999999999754 5555 56677899999999875
No 33
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=100.00 E-value=5.7e-38 Score=312.66 Aligned_cols=284 Identities=25% Similarity=0.346 Sum_probs=213.1
Q ss_pred CCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhc-cCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHH
Q 041678 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMD-FHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~-~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~ 121 (402)
...|++|+|+|++++. ...++|+++|||||++||++ +++|+|+|+.+|.++++.+ ++++.+|+|.||+....+.
T Consensus 146 ~~~~~~V~E~s~~q~~---~~~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~--~~~~~~V~n~dd~~~~~~~ 220 (448)
T TIGR01082 146 GSGEYLVAEADESDAS---FLHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNL--PFYGLAVICADDPVLRELV 220 (448)
T ss_pred CCCCEEEEECCCccch---HhhccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhC--CCCCEEEEECCCHHHHHHH
Confidence 3469999999999873 26789999999999999999 8889999999999999876 5678999999999888776
Q ss_pred hccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCee-EEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 041678 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI-LEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200 (402)
Q Consensus 122 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~ 200 (402)
+.. ..++++|+..+...++....+........|.+...+.. ..+.++++|.||++|+++|++++..+|++.+.|+++
T Consensus 221 ~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~a~~~~lgi~~~~i~~~ 298 (448)
T TIGR01082 221 PKA--TEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIAVALELGIDFEAILRA 298 (448)
T ss_pred hhc--CCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEecCccHhHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 432 34778888643334554433322222333444433322 356789999999999999999999999999999999
Q ss_pred hhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhhCC-CcEEEEEccCC-CCCCCChHHHHHHHhhcCCEEE
Q 041678 201 IEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP-RRIITVVGCAG-ESDRGKRPLMTKIATDKSDVTI 278 (402)
Q Consensus 201 L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~~-~~~i~V~g~~~-~~~~~~~~~~~~~~~~~~d~vi 278 (402)
|.+|++++||||++...+|+++|+||||||+++++++++++..++ +++++|+|+.+ .|+......+.+... .+|.++
T Consensus 299 l~~f~~~~~R~e~~~~~~gv~~i~D~ahn~~~~~a~~~al~~~~~~~~ii~i~g~~~~~r~k~~~~~~~~~l~-~~d~v~ 377 (448)
T TIGR01082 299 LANFQGVKRRFEILGEFGGVLLIDDYAHHPTEIKATLKAARQGYPDKRIVVVFQPHRYSRTRDLFDDFAKVLS-DADELI 377 (448)
T ss_pred HHhCCCCCccceEEEEeCCeEEEEcCCCCHHHHHHHHHHHHHhcCCCeEEEEECCCCCccHHHHHHHHHHHHH-hCCEEE
Confidence 999999999999997777899999999999999999999998753 57889997522 232221122333333 388988
Q ss_pred EccCCC------CCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEec
Q 041678 279 LTSDNP------MNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352 (402)
Q Consensus 279 ~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~G 352 (402)
+++.++ ++.+..++.+.+... +. ..+..++++++|++.+.+.+++||+||++|
T Consensus 378 l~~~~~~~~~~~~g~~~~~i~~~~~~~-----------~~----------~~~~~~~~~~~a~~~a~~~a~~gD~VLl~G 436 (448)
T TIGR01082 378 LLDIYAAGEEPINGIDGKSLARKITQL-----------GK----------IEPYFVPDLAELVEFLAAVLQSGDLILTMG 436 (448)
T ss_pred EecccCCCCCCCCCCCHHHHHHHHhhc-----------CC----------CceEEeCCHHHHHHHHHHhcCCCCEEEEEC
Confidence 886543 355555554432110 00 113456789999999999999999999999
Q ss_pred CCC
Q 041678 353 KGH 355 (402)
Q Consensus 353 sg~ 355 (402)
+|+
T Consensus 437 ~g~ 439 (448)
T TIGR01082 437 AGD 439 (448)
T ss_pred CCC
Confidence 986
No 34
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=1.2e-38 Score=344.60 Aligned_cols=320 Identities=25% Similarity=0.263 Sum_probs=229.4
Q ss_pred CceEEEeccceEeCCc----eecC-----CCCCCCCHHHH--HHHHHHH-HHCCCCEEEEecccCCcc-cCC-ccccccC
Q 041678 3 LRTGMLSSVSYYIHGD----NKLE-----SPRTTPDAVMV--QNLMAKM-LHNGTEAVVMEASSHGLA-LGR-CSEVDFD 68 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~----~~~~-----~~~~~p~~~~~--~~~l~~~-~~~~~d~~VlE~g~~g~~-~d~-~~~~~p~ 68 (402)
+.+|+|||.|...... .+.. ....++..+.. ...+..+ .+.++|++|+|+|+++.+ .+. ...++|+
T Consensus 604 ~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~~~~~~~~~VlE~s~~~~g~~~~~~~~~~pd 683 (958)
T PRK11929 604 PVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLRLRAQHRAAVFELGMNHPGEIAYLAAIAAPT 683 (958)
T ss_pred cEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhcCCCCCcEEEEEeCCCCCccHHHHhCccCCC
Confidence 5689999999764321 1111 11123333221 1112222 246789999999998664 233 4556999
Q ss_pred EEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeEE
Q 041678 69 IAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFE 148 (402)
Q Consensus 69 iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (402)
++|||||++||+++|+|+|+|+.+|++|++.+ ++++.+|+|.||+....+.... ...++++|+.. ...++....+.
T Consensus 684 iaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~--~~~~~~Vln~Dd~~~~~~~~~~-~~~~~~~fg~~-~~~~~~~~~~~ 759 (958)
T PRK11929 684 VALVTNAQREHQEFMHSVEAVARAKGEIIAAL--PEDGVAVVNGDDPYTAIWAKLA-GARRVLRFGLQ-PGADVYAEKIA 759 (958)
T ss_pred EEEEcCCcHHHhhhcCCHHHHHHHHHHHHccC--CCCCEEEEECCcHHHHHHHHhh-cCCcEEEEeCC-CCcceEeeecc
Confidence 99999999999999999999999999999876 5568999999999887765433 23457888863 22344322111
Q ss_pred ----e-ecCceEEEEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEE
Q 041678 149 ----L-SLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVI 223 (402)
Q Consensus 149 ----~-~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi 223 (402)
. ...+..+.+....+..++.++++|.||++|+++|++++..+|++++.|+++|.+|++++||||.+...+++.+|
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~~~~~~~ii 839 (958)
T PRK11929 760 KDISVGEAGGTRCQVVTPAGSAEVYLPLIGEHNLRNALAAIACALAAGASLKQIRAGLERFQPVAGRMQRRRLSCGTRII 839 (958)
T ss_pred cceeecCCCceEEEEEECCceEEEEeCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCCceEEEcCCCcEEE
Confidence 1 11234455544444567889999999999999999999999999999999999999999999999876789999
Q ss_pred EE-CCCCHHHHHHHHHHHhhhCCCcEEEEEccCCCC-CCCCh--HHHHHHH-hhcCCEEEEccCCCCCCCHHHHHHHHHh
Q 041678 224 VD-YAHTPDALSRLLDSVRELAPRRIITVVGCAGES-DRGKR--PLMTKIA-TDKSDVTILTSDNPMNEDPLDILDDMLA 298 (402)
Q Consensus 224 ~D-~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~-~~~~~--~~~~~~~-~~~~d~vi~~~~~~~~~~~~~i~~~~~~ 298 (402)
+| |||||+|++++++++++++++++++|+|++++. +...+ ..+.+++ ....+.+++.++. +..+.+.+..
T Consensus 840 dDsya~np~s~~aaL~~l~~~~~~~~i~VlG~~~e~g~~~~~~h~~~g~~~~~~~~~~vi~~Ge~-----~~~i~~~~~~ 914 (958)
T PRK11929 840 DDTYNANPDSMRAAIDVLAELPNGPRALVLGDMLELGDNGPAMHREVGKYARQLGIDALITLGEA-----ARDAAAAFGA 914 (958)
T ss_pred EcCCCCCHHHHHHHHHHHHhccCCCEEEEECCchhcCcHHHHHHHHHHHHHHHcCCCEEEEECcC-----HHHHHHhhhc
Confidence 99 899999999999999886546889999998763 22211 3344444 4467888887543 3333332111
Q ss_pred cccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCC
Q 041678 299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355 (402)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~ 355 (402)
+ . ...++++++|++.+.+.+++||+||++||..
T Consensus 915 ~-----------------------~-~~~~~~~~~a~~~~~~~~~~gD~VLlkGSr~ 947 (958)
T PRK11929 915 G-----------------------A-RGVCASVDEIIAALRGALPEGDSVLIKGSRF 947 (958)
T ss_pred c-----------------------c-ceeeCCHHHHHHHHHHhcCCCCEEEEEeCcc
Confidence 0 0 1135789999999999999999999999943
No 35
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.6e-37 Score=313.22 Aligned_cols=293 Identities=25% Similarity=0.383 Sum_probs=216.8
Q ss_pred CCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhcc
Q 041678 45 TEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQG 124 (402)
Q Consensus 45 ~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~ 124 (402)
.+++|+|+|++++ +.+..++|+++|||||++||+++|||+|+|+.+|++|++ +++.+|+|.||+....+....
T Consensus 174 ~~~~V~E~ss~~l--~~~~~~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~-----~~~~~Vln~dd~~~~~~~~~~ 246 (498)
T PRK02006 174 PDVWVLELSSFQL--ETTHTLAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG-----PRTVRVLNRDDARVMAMAPPG 246 (498)
T ss_pred CcEEEEEccHHHh--CcccccCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC-----CCCEEEEeCCCHHHHHHhhcc
Confidence 4999999999987 457788999999999999999999999999999999996 257999999999888775432
Q ss_pred CCCCCEEEEeccCC--CCceEEeeEE-----eecCceEEEEEcC-----C-----------eeEE-EEeCCCchHHHHHH
Q 041678 125 NPDVPVVTFAMENK--KADVHPLKFE-----LSLFETQVLVNTP-----H-----------GILE-ISSGLLGRHNIYNI 180 (402)
Q Consensus 125 ~~~~~v~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~-----~-----------~~~~-~~l~l~G~hn~~Na 180 (402)
...++++|+.... ..++...... .......|.+..+ + .... ++++++|.||++|+
T Consensus 247 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na 325 (498)
T PRK02006 247 -GAADAVTFGLDEPAADGDYGLLRDNGMAWLVEAEDRDAADPAPSRRRKKDAAPPPDIRLKRLMPADALRIRGLHNAANA 325 (498)
T ss_pred -CCccEEEEeCCCccccccceEEecCCeEEEEecCcccccccccccccccccccccccchhceeeHhhcCCCcHHHHHHH
Confidence 1346788886322 1233221100 0000100110000 0 0111 45799999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEEC-CCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCC
Q 041678 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDY-AHTPDALSRLLDSVRELAPRRIITVVGCAGESD 259 (402)
Q Consensus 181 ~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~-ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~ 259 (402)
++|++++..+|++.+.++++|.+|++++||||++...+|+.+|+|| +|||+|+.++++.++ +++++|+|.+. ++
T Consensus 326 laAia~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~~~~g~~~idDs~~tn~~s~~~al~~~~----~~ii~IlGg~~-~~ 400 (498)
T PRK02006 326 LAALALARAIGLPAAPLLHGLREYRGEPHRVELVATIDGVDYYDDSKGTNVGATVAALDGLA----QRVVLIAGGDG-KG 400 (498)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEECCEEEEEcCCCCCHHHHHHHHHhCC----CCEEEEEcCCC-CC
Confidence 9999999999999999999999999999999999866788999995 999999999999873 57889998653 34
Q ss_pred CCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHH
Q 041678 260 RGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAV 339 (402)
Q Consensus 260 ~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~ 339 (402)
...+++... +....|.+++++.. ...+.+.+ .+.+ ..+..++++++|++.+.
T Consensus 401 ~~~~~~~~~-l~~~~~~vi~~G~~-----~~~i~~~~-~~~~---------------------~~~~~~~~~~eAi~~a~ 452 (498)
T PRK02006 401 QDFSPLAAP-VARHARAVVLIGRD-----APAIRAAL-AGTG---------------------VPLVDAATLEEAVRAAA 452 (498)
T ss_pred CCHHHHHHH-HHHhCCEEEEEcCC-----HHHHHHHH-hhCC---------------------CceEecCCHHHHHHHHH
Confidence 444555444 34567888888643 23333211 1100 12445688999999999
Q ss_pred HhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHhhH
Q 041678 340 AMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVD 382 (402)
Q Consensus 340 ~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (402)
+.+++||+||++ +++.||++ +++|.+|++.|+++++.+.
T Consensus 453 ~~~~~gd~VLls-p~~~S~d~---f~~~~~Rg~~F~~~v~~~~ 491 (498)
T PRK02006 453 ALAQPGDAVLLS-PACASLDM---FRNYAHRAEVFRAAVEELA 491 (498)
T ss_pred HhcCCCCEEEEC-hhhccccc---ccCHHHHHHHHHHHHHHHH
Confidence 999999999985 46677887 7889999999999998753
No 36
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=9.1e-38 Score=311.63 Aligned_cols=289 Identities=21% Similarity=0.251 Sum_probs=212.3
Q ss_pred CCCCEEEEecccCCcccCCcc-ccccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHH
Q 041678 43 NGTEAVVMEASSHGLALGRCS-EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~-~~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~ 121 (402)
.+.|++|+|+|+++++ +... .++|+++|||||++||+++|||+|+|..+|++|++.. + .+.+|+|.||+....+.
T Consensus 162 ~~~~~~VlE~ss~q~~-~~~~~~~~P~iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~--~-~~~~v~n~dd~~~~~~~ 237 (468)
T PRK04690 162 PAPEYWAIELSSYQTG-DVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEG--R-PRIALLNAADPRLAALQ 237 (468)
T ss_pred CCCcEEEEEecCCccc-ccccccCCCCEEEEcCCCHHHhcccCCHHHHHHHHHHHHhCC--C-CCeEEEeCccHHHHHHh
Confidence 4679999999999984 3332 4899999999999999999999999999999999874 2 25789999998876653
Q ss_pred hccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCeeE-EEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 041678 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL-EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200 (402)
Q Consensus 122 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~ 200 (402)
. ...++++|+... .+... + .+.+......+ .+.++++|.||++|+++|++++..+|++.+.|+++
T Consensus 238 ~---~~~~v~~~~~~~---~~~~~-------~-~~~~~~~~~~~~~~~~~l~G~h~~~Na~~A~a~~~~lgi~~~~i~~~ 303 (468)
T PRK04690 238 L---PDSEVVWFNHPD---GWHVR-------G-DVVYRGEQALFDTALVPLPGRHNRGNLCAVLAALEALGLDAVALAPA 303 (468)
T ss_pred c---CCCeEEEeeCCc---cceec-------c-eEEEcCCceEEeeccccCccHhhHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 2 235678887521 11100 0 11111111111 34678999999999999999999999999999999
Q ss_pred hhcCCCCCCceeeeecCCCeEEEEE-CCCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEE
Q 041678 201 IEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTIL 279 (402)
Q Consensus 201 L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~ 279 (402)
|.+|++||||||++...+++.+|+| +||||+|++++++.+. .+++++|+|++ +++.....++..+.....+.+++
T Consensus 304 l~~~~~~~gR~e~~~~~~g~~iidDs~ahNp~a~~~al~~~~---~~~i~~i~Gg~-~k~kd~~~l~~~l~~~~~~~v~~ 379 (468)
T PRK04690 304 AAGFRPLPNRLQELGSRDGITYVNDSISTTPHASLAALDCFA---GRRVALLVGGH-DRGLDWTDFAAHMAQRAPLEIVT 379 (468)
T ss_pred HHhCCCCCCCcEEEEccCCeEEEEeCCCCCHHHHHHHHHhcc---CCcEEEEEcCC-CCCCCHHHHHHHHHhccCeEEEE
Confidence 9999999999999987668899999 5999999999987763 35788999864 34444456665554332466777
Q ss_pred ccC-CCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHH-hCCCCcEEEEecCCCcc
Q 041678 280 TSD-NPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVA-MGEEGDMVVVAGKGHET 357 (402)
Q Consensus 280 ~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~-~~~~gD~VLv~Gsg~~~ 357 (402)
++. .+|.. +.+.+.. + . + ...+..++++++|++.+.+ ..++||+||+ +++|+|
T Consensus 380 ~g~~~~r~~------~~l~~~~--------~---~--~-----~~~~~~~~~~~~Av~~A~~~~~~~gdvVLl-SPa~aS 434 (468)
T PRK04690 380 MGANGPRIH------ALLAPLA--------A---A--G-----RFGLHAADDLAHAVRLARTALGAQGGVVLL-SPGAPS 434 (468)
T ss_pred eCCCHHHHH------HHHHhcc--------c---c--c-----CCceEEcCCHHHHHHHHHHHhCCCCCEEEe-Cccccc
Confidence 654 33321 1111100 0 0 0 0124456789999999988 7889998888 578999
Q ss_pred eEEeCCEeeecCcHHHHHHHHHhh
Q 041678 358 YQIEGDKKEFFDDREESREALQYV 381 (402)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~ 381 (402)
|++ +++|.+|++.|++++...
T Consensus 435 fD~---f~~y~~RG~~F~~~~~~~ 455 (468)
T PRK04690 435 FGA---YRDYVARGRHFAQLAGFD 455 (468)
T ss_pred ccc---ccCHHHHHHHHHHHhccC
Confidence 999 789999999999998764
No 37
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=100.00 E-value=1.6e-36 Score=302.24 Aligned_cols=279 Identities=20% Similarity=0.194 Sum_probs=204.3
Q ss_pred CCCCEEEEecccCCcc--cCCccc--cccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHH
Q 041678 43 NGTEAVVMEASSHGLA--LGRCSE--VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNAT 118 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~--~d~~~~--~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~ 118 (402)
.+.|++|+|+|+++++ ..+... ++|+++|||||++||+++|+|+|+|+.+|++|++.+ ++++.+|+|.||+.+.
T Consensus 149 ~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~~~--~~~~~~i~n~dd~~~~ 226 (448)
T TIGR01081 149 GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRTV--PGEGLILCPGRDQSLK 226 (448)
T ss_pred CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccCCHHHHHHHHHHHHHhC--CCCCEEEEeCCCHHHH
Confidence 3579999999999884 223334 699999999999999999999999999999999875 5567899999999887
Q ss_pred HHHhccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCee-EEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHH
Q 041678 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI-LEISSGLLGRHNIYNILAAVAVGIAVGAPLEDI 197 (402)
Q Consensus 119 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i 197 (402)
.+.... ...++.+|+.. .++....+. ..+..|.+...+.. ..+.++++|.||++|+++|++++..+|++.+.+
T Consensus 227 ~~~~~~-~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~A~a~~~~lgi~~~~i 300 (448)
T TIGR01081 227 DTLAKG-CWSEQEFFGEQ---GEWQAEKIT--ADGSHFDVLLDGEKVGEVKWSLVGRHNMHNALMAIAAARHVGVAIEDA 300 (448)
T ss_pred HHHHhc-cCCCeEEECCC---CCEEEEEEe--cCCcEEEEEECCceeEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 665421 12346666531 234333222 23344544433332 356789999999999999999999999999999
Q ss_pred HHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhhCC-CcEEEEEccCCCCC--CCChHHHHHHHhhcC
Q 041678 198 VRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAP-RRIITVVGCAGESD--RGKRPLMTKIATDKS 274 (402)
Q Consensus 198 ~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~~-~~~i~V~g~~~~~~--~~~~~~~~~~~~~~~ 274 (402)
+++|.+|++++||||++...+++.+|+||||||+|++++++++++..+ +++++|+|+..+.. ..+...+..+. ..+
T Consensus 301 ~~~L~~~~~~~~R~e~~~~~~g~~ii~D~ahNp~s~~~~l~~l~~~~~~~~ii~I~g~~~~~~~lg~~~~~l~~~~-~~~ 379 (448)
T TIGR01081 301 CEALGSFVNAKRRLELKGEANGITVYDDFAHHPTAIEATLQGLRQKVGGARILAVLEPRSNTMKLGVHKDDLAPSL-GRA 379 (448)
T ss_pred HHHHHhCCCCCcceEEEEecCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCeEEEEECCCcchhhhhhHHHHHHHHH-HhC
Confidence 999999999999999997656789999999999999999999987543 46789998642210 01122333333 368
Q ss_pred CEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCC
Q 041678 275 DVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKG 354 (402)
Q Consensus 275 d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg 354 (402)
|.+++++...+.....+.+. ... ..+..++++++|++.+.+.+++||+||++|+|
T Consensus 380 d~vi~~~~~~~~~~~~~~~~----~~~---------------------~~~~~~~~~~~a~~~~~~~a~~gd~VLv~gag 434 (448)
T TIGR01081 380 DQVFLYQPGQIPWDVAEVAA----QCV---------------------QPANVSADFDAFVAMIVKNAQPGDHILVMSNG 434 (448)
T ss_pred CEEEEcCCCCCccCHHHHHH----hcC---------------------CCeEEcCCHHHHHHHHHHhCCCCCEEEEECCC
Confidence 88888865432222222111 100 01335577899999999999999999999998
Q ss_pred C
Q 041678 355 H 355 (402)
Q Consensus 355 ~ 355 (402)
+
T Consensus 435 ~ 435 (448)
T TIGR01081 435 G 435 (448)
T ss_pred C
Confidence 5
No 38
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=2.9e-35 Score=290.23 Aligned_cols=330 Identities=18% Similarity=0.233 Sum_probs=225.9
Q ss_pred CCCceEEEeccc-------eEeCCceecC-------------------CCCCCCCHHHHHHHHH--HHHHCCCCEEEEec
Q 041678 1 MGLRTGMLSSVS-------YYIHGDNKLE-------------------SPRTTPDAVMVQNLMA--KMLHNGTEAVVMEA 52 (402)
Q Consensus 1 ~g~~~g~~~t~g-------~~~~~~~~~~-------------------~~~~~p~~~~~~~~l~--~~~~~~~d~~VlE~ 52 (402)
.|.+||+.+|-+ +.+++..+.+ .....|..|++.++++ .|.+.++|++|+|+
T Consensus 86 ~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEv 165 (530)
T PLN02881 86 CGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEV 165 (530)
T ss_pred CCCCEEEECCCccCcceeEEEECCEecCHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 488999999998 7777754433 1111389999999877 47899999999999
Q ss_pred ccCCcccCCcccc-ccCEEEEeCCCcchhccCC-CHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhc-c-CCCC
Q 041678 53 SSHGLALGRCSEV-DFDIAVFTNLTRDHMDFHG-TEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQ-G-NPDV 128 (402)
Q Consensus 53 g~~g~~~d~~~~~-~p~iaViTnI~~DHl~~~g-t~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~-~-~~~~ 128 (402)
|++|+ .|.++++ +|+++|||||+.||+++|| |+|+|+.+|++||+. +..+|+..+.+....++.. + ..++
T Consensus 166 GlgGr-~DaTnvi~~p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k~-----g~p~vt~~q~~ea~~vl~~~A~e~~a 239 (530)
T PLN02881 166 GLGGR-LDATNVVQKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKP-----GVPAFTVPQPDEAMRVLEERASELGV 239 (530)
T ss_pred cCCCC-chhhhccCCCCEEEEccccHHHHHhhcCCHHHHHHHHHHHHhc-----CCCEEEeCCChHHHHHHHHHHHHhCC
Confidence 99999 8999987 8999999999999999999 999999999999964 4566665566655555432 2 1344
Q ss_pred CEEEEeccCCCCceEEeeEEeecCceEEEEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHc---------------CCC
Q 041678 129 PVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAV---------------GAP 193 (402)
Q Consensus 129 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~l---------------gi~ 193 (402)
++..++.. + .+.+ ..+.+++.|.||..|+++|++++..+ ...
T Consensus 240 ~l~~v~~~----~-------------~~~~------~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~~~~~~~~~~l 296 (530)
T PLN02881 240 PLQVVEPL----D-------------SYGL------SGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEEFEALLQAGTL 296 (530)
T ss_pred cEEEeccc----c-------------ccee------cccCCCCCChhHHHhHHHHHHHHHHHHhhccccccccccccCCC
Confidence 54433310 0 0001 02457899999999999999998764 234
Q ss_pred HHHHHHHhhcCCCCCCceeeeec------C-CCeEEEEECCCCHHHHHHHHHHHhhhC----------------------
Q 041678 194 LEDIVRGIEEVDAVPGRCELIDE------E-QAFGVIVDYAHTPDALSRLLDSVRELA---------------------- 244 (402)
Q Consensus 194 ~~~i~~~L~~~~~~~gR~e~i~~------~-~g~~vi~D~ahnp~s~~~~l~~l~~~~---------------------- 244 (402)
++.++++|.++ .||||||++.. . +++.+|+|+||||+|++++.++++...
T Consensus 297 ~~~i~~GL~~~-~wpGR~e~v~~~~~~~~~~~~~~~~LDGAHNp~s~~~l~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (530)
T PLN02881 297 PEQFIKGLSTA-SLQGRAQVVPDSYINSEDSGDLVFYLDGAHSPESMEACARWFSSAIKGDEQSPGSGYGPHGGGGKSED 375 (530)
T ss_pred HHHHHHHHHhC-CCCceEEEeccccccccCCCCCeEEEECCCCHHHHHHHHHHHHHHhcccccCCccccccccccccccc
Confidence 56899999999 89999999964 1 357899999999999999999996521
Q ss_pred -----CCcEEEEEccCCCCCCCChHHHHHHHh------hcCCEEEEccCCC--CC-----CCHHHHHHHHHhcccchhhh
Q 041678 245 -----PRRIITVVGCAGESDRGKRPLMTKIAT------DKSDVTILTSDNP--MN-----EDPLDILDDMLAGVGWTMQE 306 (402)
Q Consensus 245 -----~~~~i~V~g~~~~~~~~~~~~~~~~~~------~~~d~vi~~~~~~--~~-----~~~~~i~~~~~~~~~~~~~~ 306 (402)
..++++||+++.+||.. .++..+.. ..+|.+++++... .. ....+.. .+. .....++
T Consensus 376 ~~~~~~~~~ilvF~~~~dkD~~--~lL~~L~~~~~~~~~~f~~aiF~~n~~~~~~~~~~~~~~~~~~-~l~--~q~~l~~ 450 (530)
T PLN02881 376 TESNKISEQILLFNCMSVRDPQ--LLLPPLANTCASNGVPFKKALFVPNISVYNKVGSGLPVDDPQV-DLS--WQFTLQR 450 (530)
T ss_pred ccccCCCCEEEEEcCCCCCCHH--HHHHHHHHHHHhcCCCCCeEEEcCCccccCCCcccCCCcchhh-hHH--HHHHHHH
Confidence 13689999999998864 34443321 3578887775331 11 1111100 000 0001111
Q ss_pred hhhcC---CCC-------------CCCCCCCCCceeecccHHHHHHHHHHhCCCCc----EEEEecCCCcceEEeCCEee
Q 041678 307 YLKYG---END-------------YYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGD----MVVVAGKGHETYQIEGDKKE 366 (402)
Q Consensus 307 ~~~~~---~~~-------------~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD----~VLv~Gsg~~~~~~~~~~~~ 366 (402)
.++.- ... .-.+-.......+++++++|++++.+...+.. -|||+|| ++|||++..
T Consensus 451 ~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~r~~~~~~~~~~~~vlVTGS----lhLvG~~l~ 526 (530)
T PLN02881 451 VWESLIRGKAGAPADAVCEESASSGLNDGKSDENSAVFPSLPLAIKWLRDCARENPSLRFQVLVTGS----LHLVGDVLR 526 (530)
T ss_pred HHHHhccccccccccccccccccccccCCCCCCceeEecCHHHHHHHHHHHhhhCCCcceEEEEecc----hhhhhHHHH
Confidence 11111 000 00000111246788999999999998875432 4899999 999998765
Q ss_pred ecC
Q 041678 367 FFD 369 (402)
Q Consensus 367 ~~~ 369 (402)
.++
T Consensus 527 ~l~ 529 (530)
T PLN02881 527 LLK 529 (530)
T ss_pred Hhc
Confidence 543
No 39
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.4e-35 Score=287.44 Aligned_cols=306 Identities=16% Similarity=0.151 Sum_probs=215.1
Q ss_pred CceEEEeccceEeCCce----ecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcc
Q 041678 3 LRTGMLSSVSYYIHGDN----KLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRD 78 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~~----~~~~~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~D 78 (402)
..+|+|||.|......- +.......... +...+.. ...+.|++|+|+|++++ ..+..++|+++|||||++|
T Consensus 90 ~~i~ITGT~GKTTTt~ml~~iL~~~g~~~~gn--iG~p~~~-~~~~~~~~V~E~ss~~~--~~~~~~~p~iavitNi~~d 164 (401)
T PRK03815 90 FSIWISGTNGKTTTTQMTTHLLEDFGAVSGGN--IGTPLAE-LDKNAKIWVLETSSFTL--HYTNKAKPNIYLLLPITPD 164 (401)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHCCCcEEEE--ecHhHHh-cCCCCCEEEEECChHHh--hCCccCCCcEEEEcCCccc
Confidence 46899999998753311 11111111111 1122222 35677999999999875 4678889999999999999
Q ss_pred hhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEE
Q 041678 79 HMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLV 158 (402)
Q Consensus 79 Hl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (402)
|+++|+|+|+|+++|.+|++.+ ++++.+|+|.||+... ...++++|+.. . ++. . .+.+
T Consensus 165 Hld~~~s~e~~~~~k~~i~~~~--~~~~~~v~n~dd~~~~-------~~~~~~~fg~~-~--~~~-~---------~~~~ 222 (401)
T PRK03815 165 HLSWHGSFENYVKAKLKPLKRM--NEGDVAILPKKFKNTP-------TKAQKIFYEDE-E--DLA-E---------KFGI 222 (401)
T ss_pred chhhcCCHHHHHHHHHHHHhCC--CcCCEEEEeccccccc-------cCCcEEEEecC-C--ccc-c---------ceeE
Confidence 9999999999999999999987 6678999999998531 12467788741 1 211 0 0111
Q ss_pred EcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEE-CCCCHHHHHHHH
Q 041678 159 NTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLL 237 (402)
Q Consensus 159 ~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp~s~~~~l 237 (402)
.. . .+.+.+. +++|+++|++++..+|+ +.+.++|.+|++++||||++...+|+++|+| |++||+|+.+++
T Consensus 223 ~~--~----~~~~~~~-~~~NalaA~a~a~~~G~--~~~~~~L~~f~~~~~R~e~~~~~~gv~~idDs~~tn~~a~~~al 293 (401)
T PRK03815 223 DS--E----KINFKGP-FLLDALLALAVYKILFD--ELDYERLNAFKIGKHKLEEFRDKQGRLWVDDSKATNVDATLQAL 293 (401)
T ss_pred eh--H----hcCCchH-HHHHHHHHHHHHHHhCc--HHHHHHHHhCCCCCceEEEEEEECCEEEEECCCCCCHHHHHHHH
Confidence 11 0 1233454 49999999999999994 5566789999999999999987688999999 599999998888
Q ss_pred HHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCC
Q 041678 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYP 317 (402)
Q Consensus 238 ~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (402)
+.+ +.+++++|+|+ .++...+.++...+..... .+++.++.. ..+.+ .+....
T Consensus 294 ~~~---~~~~ii~IlGG-~~k~~~~~~l~~~~~~~~~-~v~~~G~~~-----~~~~~-~~~~~~---------------- 346 (401)
T PRK03815 294 KRY---KDKKIHLILGG-DDKGVDLTPLFEFMKNLNI-ELYAIGSNT-----EKIQA-LAKEFN---------------- 346 (401)
T ss_pred HhC---CCCCEEEEECC-CCCCCCHHHHHHHHHhhCc-EEEEECCCH-----HHHHH-HHhcCC----------------
Confidence 876 22477999994 4555555555555544444 366655432 11111 111000
Q ss_pred CCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHh
Q 041678 318 PLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQY 380 (402)
Q Consensus 318 ~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (402)
..+..++++++|++.+.+.+++||+||++ ++|+||++ +++|.+|++.|+++++.
T Consensus 347 -----~~~~~~~~~e~av~~~~~~~~~gdvVLlS-Pa~aSfd~---f~ny~~RG~~F~~~v~~ 400 (401)
T PRK03815 347 -----IKAFVCEFLEKAVEEIKKVLKQNEVALLS-PAAASLDQ---FKSYKERGEKFKAFVLK 400 (401)
T ss_pred -----CeEEEeCCHHHHHHHHHHhCCCCCEEEeC-hhhhcccc---ccCHHHHHHHHHHHHHh
Confidence 12345677899999999889999988885 58999999 78999999999999875
No 40
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.7e-33 Score=275.58 Aligned_cols=307 Identities=18% Similarity=0.197 Sum_probs=209.2
Q ss_pred CceEEEeccceEeCCce----ecCC--CCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCC
Q 041678 3 LRTGMLSSVSYYIHGDN----KLES--PRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLT 76 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~~----~~~~--~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~ 76 (402)
..+|+|||.|......- +... ...+...+-+. .+.. ..+.|++|+|+|+++++.......+|+++|||||+
T Consensus 103 ~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG~p-~l~~--~~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~ 179 (418)
T PRK00683 103 PSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIP-ILDG--MQQPGVRVVEISSFQLADQEKSYPVLSGGMILNIS 179 (418)
T ss_pred CEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcCHH-HHHH--hhcCCEEEEEechhhhCcCcccCCCccEEEEecCC
Confidence 46899999998753210 1010 01111221000 1221 23589999999999984222233455999999999
Q ss_pred cchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeEEeecCceEE
Q 041678 77 RDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQV 156 (402)
Q Consensus 77 ~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (402)
+||+++|+|+|+|+.+|.+|+..+. +.++.... ...+|+. ++.. .. ...+
T Consensus 180 ~dHld~~~s~e~y~~aK~~i~~~~~---------~~~~~~~~----------~~~~~~~-----~~~~-~~-----~~~~ 229 (418)
T PRK00683 180 DNHLDYHGNLSAYFQAKQNIAKCLR---------NPDDLWVG----------DERSYGH-----SYLE-YV-----QEIM 229 (418)
T ss_pred hhHhccCCCHHHHHHHHHHHHHhhh---------Cccccccc----------ccCCcCc-----eeec-Cc-----chhh
Confidence 9999999999999999999997641 11111000 0112221 0000 00 0000
Q ss_pred EEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHH-cCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEE-CCCCHHHHH
Q 041678 157 LVNTPHGILEISSGLLGRHNIYNILAAVAVGIA-VGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALS 234 (402)
Q Consensus 157 ~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~-lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp~s~~ 234 (402)
.....+ ..++++|.||++|+++|++++.. +|++.+.++++|.+|++++||||++...+|..+|+| ||+||+|+.
T Consensus 230 ~~~~~~----~~~~~~g~hn~~Na~aA~a~~~~l~g~~~~~i~~~l~~~~~~~~R~e~v~~~~g~~~i~Ds~~t~~~s~~ 305 (418)
T PRK00683 230 RLLDKG----SALKPLYLHDRYNYCAAYALANEVFPISEESFLEAVATFEKPPHRMEYLGEKDGVHYINDSKATTVSAVE 305 (418)
T ss_pred hhhccc----cccCCCccchHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCceEEEeecCCeEEEEcCCCCCHHHHH
Confidence 000011 24578999999999999999999 699999999999999999999999987678999999 799999999
Q ss_pred HHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCC
Q 041678 235 RLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGEND 314 (402)
Q Consensus 235 ~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 314 (402)
++++.++ +++++|+|.+. ++.+...+... +....+.+++++.. ...+.+.+...
T Consensus 306 ~al~~~~----~~~i~vlG~~~-~~~d~~~l~~~-~~~~~~~v~~~G~~-----~~~i~~~l~~~--------------- 359 (418)
T PRK00683 306 KALLAVG----NQVIVILGGRN-KGCDFSSLLPV-LRQTAKHVVAMGEC-----RQEIAQALSEK--------------- 359 (418)
T ss_pred HHHHhCC----CCEEEEEcCCC-CCCCHHHHHHH-HHHhCCEEEEECCC-----HHHHHHHHhcC---------------
Confidence 9998752 57899999643 23333344443 34558888888643 23333321110
Q ss_pred CCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHhhHHH
Q 041678 315 YYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDEL 384 (402)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (402)
..+..++++++|++.+.+.+++||+||++ +|+.+|+. +++|.+|++.|+++++.+.+|
T Consensus 360 --------~~~~~~~~~~~a~~~~~~~~~~gd~VLls-p~~~s~d~---f~~~~~RG~~F~~~v~~~~~~ 417 (418)
T PRK00683 360 --------FPLTVVKDLQEAVSCAQEIAQPGDVILLS-PGCASFDQ---FRSFEERGAMFKQLVGMMEAL 417 (418)
T ss_pred --------CCEEEeCCHHHHHHHHHHhCCCCCEEEEC-chhccccc---ccCHHHHHHHHHHHHHHHhhh
Confidence 01345678999999999999999999986 68888987 789999999999999998876
No 41
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=6.6e-32 Score=286.42 Aligned_cols=227 Identities=22% Similarity=0.306 Sum_probs=172.0
Q ss_pred CCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccC-CCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHH
Q 041678 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFH-GTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~-gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~ 121 (402)
.+.|++|+|+|+++ ..+..++|+++|||||++||+++| +|+|+|+.+|..+++.+ ++++.+|+|.||+......
T Consensus 150 ~~~d~~V~E~ss~~---~~~~~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~--~~~~~~V~N~Dd~~~~~~~ 224 (809)
T PRK14573 150 GSSEYFVAEADESD---GSLKHYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKV--QQINKCFYNGDCPRLKGCL 224 (809)
T ss_pred CCCCEEEEECCCCc---chhheeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcC--CCCCEEEEeCCCHHHHhhc
Confidence 45799999999985 245688999999999999999988 79999999999888765 5568899999998665421
Q ss_pred hccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCee-EEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 041678 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI-LEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200 (402)
Q Consensus 122 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~ 200 (402)
+..+|+... .+++....+........|.+...+.. ..+.++++|.||++|+++|++++..+|++.+.|+++
T Consensus 225 -------~~~~~g~~~-~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~ 296 (809)
T PRK14573 225 -------QGHSYGFSS-SCDLHILSYYQEGWRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIALTLGIDEGAIRNA 296 (809)
T ss_pred -------ccEEEccCC-CCcEEEEEEEecCCeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 124666532 23443322222222233544433322 357789999999999999999999999999999999
Q ss_pred hhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhhC-CCcEEEEEccCCCCCCCChHHHHHHHh--hcCCEE
Q 041678 201 IEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELA-PRRIITVVGCAGESDRGKRPLMTKIAT--DKSDVT 277 (402)
Q Consensus 201 L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~-~~~~i~V~g~~~~~~~~~~~~~~~~~~--~~~d~v 277 (402)
|.+|++++||||++...+++.+|+||||||+|++++++++++.. .+|+++||++ +++...+..+..+.. ..+|.+
T Consensus 297 L~~f~~~~~R~e~~~~~~~~~~i~D~ahnP~~~~a~l~~l~~~~~~~rli~vf~~--~~~~~~~~~~~~~~~~l~~~d~v 374 (809)
T PRK14573 297 LKGFSGVQRRLERKNSSETFLFLEDYAHHPSEISCTLRAVRDAVGLRRIIAICQP--HRFSRLRECLDSFPSAFQDADEV 374 (809)
T ss_pred HHhCCCCCCCCEEEeccCCcEEEEECCCCHHHHHHHHHHHHhhcCCCEEEEEEcC--CcchhHHHHHHHHHHHHHHCCEE
Confidence 99999999999999876778999999999999999999998854 4678889864 333443444444322 358999
Q ss_pred EEccCCC
Q 041678 278 ILTSDNP 284 (402)
Q Consensus 278 i~~~~~~ 284 (402)
+++..++
T Consensus 375 ilt~~~~ 381 (809)
T PRK14573 375 ILTDVYS 381 (809)
T ss_pred EECCccC
Confidence 9987664
No 42
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=99.95 E-value=1.6e-27 Score=226.21 Aligned_cols=307 Identities=17% Similarity=0.217 Sum_probs=205.4
Q ss_pred CCCCCHHHHHHHHH--HHHHCCCCEEEEecccCCcccCCcccc-ccCEEEEeCCCcchhccCC-CHHHHHHHHHHHhhhc
Q 041678 25 RTTPDAVMVQNLMA--KMLHNGTEAVVMEASSHGLALGRCSEV-DFDIAVFTNLTRDHMDFHG-TEEEYRNAKAKLFSRM 100 (402)
Q Consensus 25 ~~~p~~~~~~~~l~--~~~~~~~d~~VlE~g~~g~~~d~~~~~-~p~iaViTnI~~DHl~~~g-t~e~i~~~K~~i~~~~ 100 (402)
..-|..|++-|.++ .|.+.++|++|+|+|+||. .|.||++ +|-++.||+||.||+.++| |+++|+.+|++||+.
T Consensus 147 ~~~p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~-~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~- 224 (496)
T KOG2525|consen 147 VSMPTYFEFLTLLAFHVFVKENVDVAVIEVGLGGE-LDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKE- 224 (496)
T ss_pred cCCCchhhhhHhhhheeeeecCCcEEEEEeccccc-cccccccccceEEEEeecCCchHHHHhhHHHHHHHHhcccccc-
Confidence 35599999999877 4789999999999999999 9999998 6999999999999999999 999999999999964
Q ss_pred CCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCeeEEEEeCCCchHHHHHH
Q 041678 101 VDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180 (402)
Q Consensus 101 ~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na 180 (402)
+..++.-.+.+...+++...+....+.-+-.. +...+ ......+.+.|.||..|+
T Consensus 225 ----gvpaft~~q~~e~~nvL~~ra~e~~~~L~~v~-p~~~~--------------------~ls~~~lgl~g~hq~~na 279 (496)
T KOG2525|consen 225 ----GVPAFTVPQPPEALNVLKERASELGVPLFVVP-PLEAY--------------------ELSGVNLGLIGTHQWSNA 279 (496)
T ss_pred ----CCceEEcCCcHHHHHHHHHHHHhcCCCceecC-Cchhh--------------------hhcCCcccccccchhhhh
Confidence 45566655666776666543211111111110 00000 000112578999999999
Q ss_pred HHHHHHHHHc----C---------------CCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHh
Q 041678 181 LAAVAVGIAV----G---------------APLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR 241 (402)
Q Consensus 181 ~aA~a~a~~l----g---------------i~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~ 241 (402)
.+|+.++..+ | +++. ...+|.++ .||||+|++...++++++.|+||||+||+++.++++
T Consensus 280 ~lA~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~l~GL~~~-~wPGR~qil~~~~~~~~llDGAHt~eSaea~~~w~~ 357 (496)
T KOG2525|consen 280 SLAVQLASEWLIQNGRVAEGVLDALQTSGLIPPA-FLSGLAST-DWPGRLQILEYGRGVTWLLDGAHTKESAEACAKWFR 357 (496)
T ss_pred HHHHHHHHHHHHhcCcccccCCCccccccCCCHH-Hhcchhhc-cCCCceEEEecCCCcEEEecCCCCHHHHHHHHHHHH
Confidence 9999886642 1 4444 44599999 899999999987788999999999999999999998
Q ss_pred h-hC--CCc--EEEEEccCCCCCCCChHHHHHHHh-----hcCCEEEEccCCC---CCCCHHHH-----HHHHHhcccch
Q 041678 242 E-LA--PRR--IITVVGCAGESDRGKRPLMTKIAT-----DKSDVTILTSDNP---MNEDPLDI-----LDDMLAGVGWT 303 (402)
Q Consensus 242 ~-~~--~~~--~i~V~g~~~~~~~~~~~~~~~~~~-----~~~d~vi~~~~~~---~~~~~~~i-----~~~~~~~~~~~ 303 (402)
+ .+ .++ +|++|.++++++.. .+...+.. -.++.|+.++.-. ....++.+ .+..+ .....
T Consensus 358 ~~~~~~~~~~~~illfn~t~~~d~~--~Ll~~L~~~~~~~~~F~~Vvf~Pni~~~~~~~~~d~~~~~~s~~~~l-~~q~~ 434 (496)
T KOG2525|consen 358 KAVRGLKKLTSLILLFNCTSDRDPP--LLLPLLKPDAVIGTRFSSVVFMPNITSSSPVGSADSISLNTSTEEQL-NWQND 434 (496)
T ss_pred HHhccCCCccceEEEEEecCCcchH--hHhHHhccccccccccceEEecccccccCCccchhhhhccCCchHHH-HHhHH
Confidence 7 32 122 58999999888753 22332322 3556666654211 11110000 00000 00112
Q ss_pred hhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCc
Q 041678 304 MQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDD 370 (402)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~ 370 (402)
+++.++......- .......++.++..|++++.......+-+.++|| +-++|++...+++
T Consensus 435 L~~~w~~l~~~~~---~~~~~~~V~~sL~~a~~~Lr~~~~~s~~~~V~gs----lhlvg~vl~~l~~ 494 (496)
T KOG2525|consen 435 LQSVWEELKESEG---KTEDPSIVFGSLYLAYELLRDDQHLSPRIEVLGS----LHLVGGVLVLLDR 494 (496)
T ss_pred HHHHHHHHhhcCC---CceeeeeEeccHHHHHHHHHhcCCCCCeEEEEEE----EEEechHhhhhhc
Confidence 2232222211000 0112356888999999999887666667888898 9999988776654
No 43
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=99.92 E-value=1.8e-23 Score=184.44 Aligned_cols=157 Identities=33% Similarity=0.436 Sum_probs=124.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccc-cccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCC
Q 041678 26 TTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSE-VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPE 104 (402)
Q Consensus 26 ~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~-~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~ 104 (402)
+.|..+.+...+..+.+.++|++|+|+|+++++.+.... ++|+++|||||++||+++|+|+|+|+++|+++++.+ ++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~l~~~~~p~i~viTni~~dH~~~~~s~~~~~~~k~~~~~~~--~~ 107 (188)
T PF08245_consen 30 NTNNQIGLPLLLLNAREGGADIAVLEVSEGGLGDERLSFLLKPDIAVITNIGPDHLDRFGSIEEYAEAKAKIFRGL--KP 107 (188)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEEESSSCCCTSTTSGGSBESEEEE----SSSHCCTSSHHHHHHHHHGGHTTT--ST
T ss_pred cccchHHHHHHHhhhcccccceeeeeccCCccccceeeeeeehheeeeceecccccccCCCHHHHHHHHHhhhhhc--cc
Confidence 345666666666677778999999999999885333344 899999999999999999999999999999999987 66
Q ss_pred CceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEE-cCCeeEEEEeCCCchHHHHHHHHH
Q 041678 105 RHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVN-TPHGILEISSGLLGRHNIYNILAA 183 (402)
Q Consensus 105 ~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~G~hn~~Na~aA 183 (402)
++.+|+|.|||.+....... ..++++|+..+ ..++....+.....+..+.+. ......++.++++|.||++|+++|
T Consensus 108 ~~~~v~n~dd~~~~~~~~~~--~~~v~~~~~~~-~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~l~G~hn~~NalaA 184 (188)
T PF08245_consen 108 GGVAVLNADDPELAEIAANS--KCKVITFGLDN-SADIRASNISYSEEGGRFRIISYNGEEFEIELPLPGKHNVENALAA 184 (188)
T ss_dssp TSEEEEETTSHHHHHHHHHH--TTTEEEEESSS-SSEEEEEEEEEETTEEEEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred ceEEEecCCCHHHHHHHHhc--CCcEEEeccCc-ccceeeeeEEEecCCcEEEEEEecCceEEEEecCCCHHHHHHHHHH
Confidence 78999999999777766543 56799999854 446766667776777777554 466778899999999999999999
Q ss_pred HHHH
Q 041678 184 VAVG 187 (402)
Q Consensus 184 ~a~a 187 (402)
+++|
T Consensus 185 ~a~a 188 (188)
T PF08245_consen 185 IAAA 188 (188)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9986
No 44
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.92 E-value=4.8e-24 Score=222.17 Aligned_cols=204 Identities=25% Similarity=0.335 Sum_probs=150.5
Q ss_pred CCCceEEEeccceEeCCceecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchh
Q 041678 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM 80 (402)
Q Consensus 1 ~g~~~g~~~t~g~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl 80 (402)
.|++||++||.|+++++.....+.+++|.+.. ..+.+.++|++|+|+|++|+....+...+|+++|||||++||+
T Consensus 505 ~G~~vg~~~t~G~~i~~~~i~~gd~t~p~s~~-----~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL 579 (727)
T PRK14016 505 SGKRVGMTTTDGVYIDGRLIDKGDCTGPKSAR-----RVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHL 579 (727)
T ss_pred cCCeEEEECCCCEEECCEEeccccccCHHHHH-----HHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHh
Confidence 48899999999999988766666777887743 1235678999999999998843456677999999999999999
Q ss_pred ccCC--CHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeE-----EeecCc
Q 041678 81 DFHG--TEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKF-----ELSLFE 153 (402)
Q Consensus 81 ~~~g--t~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~ 153 (402)
++++ |+|+|+.+|+.+++.+ ++++.+|+|.||+.+..+.... +.++++|+.+... .+....+ .....+
T Consensus 580 ~~~~~~t~E~~~~~K~~i~~~v--~~~g~aVlNaDD~~~~~~~~~~--~~~vi~fs~~~~~-~~~~~~~~~~~~~~~~~~ 654 (727)
T PRK14016 580 GLGGINTLEDLAKVKRVVVEAV--KPDGYAVLNADDPMVAAMAERC--KGKVIFFSMDPDN-PVIAEHRAQGGRAVYVEG 654 (727)
T ss_pred hccCCCCHHHHHHHHHHHHhhh--CCCCeEEEcCCCHHHHHHHHhC--CCcEEEEeCCCCC-hHHHHHHHhCCceEEEeC
Confidence 9885 9999999999999876 5678999999999988877653 4578899864221 1100000 000011
Q ss_pred eEEEEEcCCeeE------EEEeCCCc--hHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CCCceeee
Q 041678 154 TQVLVNTPHGIL------EISSGLLG--RHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDA----VPGRCELI 214 (402)
Q Consensus 154 ~~~~~~~~~~~~------~~~l~l~G--~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~----~~gR~e~i 214 (402)
..+.+....... .+.+.++| .||++|+++|+++|+.+|++.+.|+++|++|++ .||||+.+
T Consensus 655 ~~i~~~~g~~~~~~~~~~~i~l~~~G~~~hnv~NalAAiAaa~~lGi~~~~I~~~L~sF~~~~~~~pGR~n~~ 727 (727)
T PRK14016 655 DYIVLAEGGWEIRIISLADIPLTLGGKAGFNIENALAAIAAAWALGIDIELIRAGLRTFVSDAAQAPGRFNLF 727 (727)
T ss_pred CEEEEEeCCcceeeccccccceecCCcchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccCCCcccccC
Confidence 111121111111 22332355 799999999999999999999999999999985 99999863
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=99.65 E-value=3.3e-16 Score=120.95 Aligned_cols=86 Identities=44% Similarity=0.708 Sum_probs=71.7
Q ss_pred CCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhhC-CCcEEEEEccCCC---CCCCChHHHHHHHhhcCCEEEEccC
Q 041678 207 VPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELA-PRRIITVVGCAGE---SDRGKRPLMTKIATDKSDVTILTSD 282 (402)
Q Consensus 207 ~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~-~~~~i~V~g~~~~---~~~~~~~~~~~~~~~~~d~vi~~~~ 282 (402)
||||||++...+++++|+||||||+|++++++++++.+ .+++++|+|++.+ ++......+.+++....|.++++++
T Consensus 1 vpgR~e~v~~~~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~ 80 (91)
T PF02875_consen 1 VPGRMEVVREPNGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGD 80 (91)
T ss_dssp ETTSSEEEEEETTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETS
T ss_pred CCCCcEEEeeCCCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 69999999987889999999999999999999999884 5889999998888 6555556778888777889999999
Q ss_pred CCCCCCHHHH
Q 041678 283 NPMNEDPLDI 292 (402)
Q Consensus 283 ~~~~~~~~~i 292 (402)
++|.+++.++
T Consensus 81 ~~r~~~~~~~ 90 (91)
T PF02875_consen 81 NPRAEDPEAI 90 (91)
T ss_dssp BTTTS-HHCH
T ss_pred CCCCCccccc
Confidence 9999887653
No 46
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=84.27 E-value=16 Score=28.97 Aligned_cols=102 Identities=14% Similarity=0.191 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHhhhCC-CcEEEEEccCCC--CCCC--ChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhccc
Q 041678 227 AHTPDALSRLLDSVRELAP-RRIITVVGCAGE--SDRG--KRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVG 301 (402)
Q Consensus 227 ahnp~s~~~~l~~l~~~~~-~~~i~V~g~~~~--~~~~--~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~ 301 (402)
..||.++..+++.+....+ ..+++++....- +|.+ ..--|..+.......++++|.+. .+++- .
T Consensus 2 vKNP~G~n~~l~~i~~~~~~~~~~~~lNd~~aDG~DvSWiWDvdFE~L~~~~i~~viv~G~Ra-----~Dmal----R-- 70 (113)
T PF08353_consen 2 VKNPAGFNEVLDMIASDPGPKSVLIALNDNYADGRDVSWIWDVDFEKLADPNIKQVIVSGTRA-----EDMAL----R-- 70 (113)
T ss_pred CcCcHHHHHHHHHHHhCCCCceEEEEecCCCCCCccceEEeecCHHHHhcCCCCEEEEEeeeH-----HHHHh----H--
Confidence 4699999999999976443 345555542111 1211 02236666656678888887741 12111 1
Q ss_pred chhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEec
Q 041678 302 WTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAG 352 (402)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~G 352 (402)
++ |..+. ..++.+.+++++|++.+.....+++.+.+..
T Consensus 71 ------Lk------yAGv~-~~~i~v~~d~~~a~~~~~~~~~~~~~~yil~ 108 (113)
T PF08353_consen 71 ------LK------YAGVD-EEKIIVEEDLEEALDAFLIKSDPTDKVYILA 108 (113)
T ss_pred ------ee------ecCcc-hHHeEecCCHHHHHHHHHHhcCCCCcEEEEE
Confidence 11 11111 1246678899999999666666666665543
No 47
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=54.28 E-value=33 Score=29.46 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=44.7
Q ss_pred hcCCCCCCceeeeecCC-CeEEEEECCC-CHHHHHHHHHHHhhhCC---CcEEEEEccCCCCCCCChHHHHHHH-hhcCC
Q 041678 202 EEVDAVPGRCELIDEEQ-AFGVIVDYAH-TPDALSRLLDSVRELAP---RRIITVVGCAGESDRGKRPLMTKIA-TDKSD 275 (402)
Q Consensus 202 ~~~~~~~gR~e~i~~~~-g~~vi~D~ah-np~s~~~~l~~l~~~~~---~~~i~V~g~~~~~~~~~~~~~~~~~-~~~~d 275 (402)
..+++++||+.++-... +-.+..+.++ --.++..|++.+.+-+. =..++|+|+. +++.+.+ ...+|
T Consensus 61 ~k~RPL~gRiNiVLSR~~~~~~~~t~~~~~~~slesAl~lL~~pp~~~~ve~vfvIGG~--------~vy~~al~~p~~~ 132 (190)
T KOG1324|consen 61 EKFRPLPGRINVVLSRSLKEDFAPTENVFLSSSLESALDLLEEPPSSNSVEMVFVIGGS--------EVYSEALNSPRCD 132 (190)
T ss_pred cccCCCCCceEEEEecccCcCcCCccCEEEeccHHHHHHhhcCCccccceeEEEEEcCH--------HHHHHHHcCcCcc
Confidence 46789999999985422 1112222222 14678888888876421 1357777742 3455544 35789
Q ss_pred EEEEccCC
Q 041678 276 VTILTSDN 283 (402)
Q Consensus 276 ~vi~~~~~ 283 (402)
.+.+|...
T Consensus 133 ~i~~T~I~ 140 (190)
T KOG1324|consen 133 AIHITEIF 140 (190)
T ss_pred eEEEEEec
Confidence 99998653
No 48
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=50.57 E-value=66 Score=31.97 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=51.1
Q ss_pred eEEEEE--CCCCHHHHHHHHHHHhhhCCCcEEEE--EccCCCCCCCChHHHHHHHhhcCCEEEEc-cCCCCCCCHHHHHH
Q 041678 220 FGVIVD--YAHTPDALSRLLDSVRELAPRRIITV--VGCAGESDRGKRPLMTKIATDKSDVTILT-SDNPMNEDPLDILD 294 (402)
Q Consensus 220 ~~vi~D--~ahnp~s~~~~l~~l~~~~~~~~i~V--~g~~~~~~~~~~~~~~~~~~~~~d~vi~~-~~~~~~~~~~~i~~ 294 (402)
+-=+.| ++.+.+.+..+++-+-..+.-+.++| ||+...-+.--..+...+.....++-++. -.....+...+++
T Consensus 318 pANFlD~GG~a~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l- 396 (422)
T PLN00124 318 PANFLDVGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRIL- 396 (422)
T ss_pred cceeeecCCCCCHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHH-
Confidence 334567 37788999999998866444456666 76554433222233333322233332222 1222222112222
Q ss_pred HHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhC
Q 041678 295 DMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMG 342 (402)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~ 342 (402)
+..+ ..+..++++++|++.+.+.+
T Consensus 397 ---~~~~---------------------~~~~~~~~l~~A~~~~v~~~ 420 (422)
T PLN00124 397 ---KESG---------------------MTLITAEDLDDAAEKAVKAL 420 (422)
T ss_pred ---HhCC---------------------CCeEEcCCHHHHHHHHHHHh
Confidence 1111 13667899999999988754
No 49
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=46.65 E-value=1.1e+02 Score=27.93 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhhcCCCC-------CCceeeeecCCCeEEEEEC-CCCHHHHHHHHHHHhh
Q 041678 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAV-------PGRCELIDEEQAFGVIVDY-AHTPDALSRLLDSVRE 242 (402)
Q Consensus 180 a~aA~a~a~~lgi~~~~i~~~L~~~~~~-------~gR~e~i~~~~g~~vi~D~-ahnp~s~~~~l~~l~~ 242 (402)
+..|+..|...++|.+.|..+|....+- +-++|.... +|+.+|++. -.|+.-+..-++.+=+
T Consensus 49 L~~ai~~Ak~~~~Pkd~IerAIkr~~g~~~~~~~~~~~YEg~gP-~GvaiiVe~lTDN~nRt~~~ir~~f~ 118 (238)
T TIGR01033 49 LRTAIEKAKAANMPKDNIERAIKKGAGELDGSNYEEITYEGYAP-GGVAIIVECLTDNKNRTASEVRSAFN 118 (238)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEEcC-CceEEEEEEecCCHHhHHHHHHHHHH
Confidence 4556777888999999999999987552 224444443 689999995 7788877777776543
No 50
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=46.53 E-value=1.4e+02 Score=26.44 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=25.5
Q ss_pred CeEEEEECCCCHHHHHHHHHHHhhhCCCcEEE
Q 041678 219 AFGVIVDYAHTPDALSRLLDSVRELAPRRIIT 250 (402)
Q Consensus 219 g~~vi~D~ahnp~s~~~~l~~l~~~~~~~~i~ 250 (402)
.+.+++|+-.+-.+|.+++++++...++++++
T Consensus 126 ~VIlVDDGiATGatm~aAi~~~r~~~~~~Ivi 157 (220)
T COG1926 126 TVILVDDGIATGATMKAAVRALRAKGPKEIVI 157 (220)
T ss_pred EEEEEeCCcchhHHHHHHHHHHHhcCCceEEE
Confidence 46667779999999999999999876655443
No 51
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=37.86 E-value=1.2e+02 Score=27.44 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhhcCCCC-------CCceeeeecCCCeEEEEEC-CCCHHHHHHHHHHHhh
Q 041678 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAV-------PGRCELIDEEQAFGVIVDY-AHTPDALSRLLDSVRE 242 (402)
Q Consensus 180 a~aA~a~a~~lgi~~~~i~~~L~~~~~~-------~gR~e~i~~~~g~~vi~D~-ahnp~s~~~~l~~l~~ 242 (402)
+..|+.-|...++|.+.|..+|....+- ..++|..+. +|+.+|.+. -.|+.-+..-++.+=+
T Consensus 45 L~~ai~~Ak~~nmPk~~IerAIkk~~~~~~~~~~~~~~yEg~gP-~Gvaiive~lTDN~nRt~~~ir~~~~ 114 (234)
T PF01709_consen 45 LRSAIEKAKKANMPKDNIERAIKKASGKSDGANYEEITYEGYGP-GGVAIIVECLTDNKNRTVSDIRSIFK 114 (234)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHCCSTSST---EEEEEEEEET-TTEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCcCCCCcCceEEEEEEEcC-CCcEEEEEEeCCCHhHHHHHHHHHHH
Confidence 5556777888999999999999998653 235555554 689999995 7888877777776543
No 52
>PF12049 DUF3531: Protein of unknown function (DUF3531); InterPro: IPR021920 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 149 to 199 amino acids in length.
Probab=34.51 E-value=89 Score=25.82 Aligned_cols=86 Identities=20% Similarity=0.101 Sum_probs=54.9
Q ss_pred eCCCchHHHHHHHHHHHHHH--HcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEE-CCCCHHHHHHHHHHHhhhCC
Q 041678 169 SGLLGRHNIYNILAAVAVGI--AVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVRELAP 245 (402)
Q Consensus 169 l~l~G~hn~~Na~aA~a~a~--~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp~s~~~~l~~l~~~~~ 245 (402)
+.-.|.+|.+|+-+.=+-.. .+..+.+...+.+.+.----|-+|.-... .++..| +.+.+-++..++.+|++.-.
T Consensus 41 LGrLGgfNaeNlQv~~~~~d~s~~~Yd~~~~~~~~~a~mHnmgd~Eyq~~w--aRcWvDLGTsD~~aLDVLINaL~qls~ 118 (146)
T PF12049_consen 41 LGRLGGFNAENLQVQEAGVDLSYMSYDNEEADSSMPALMHNMGDFEYQGNW--ARCWVDLGTSDALALDVLINALTQLSS 118 (146)
T ss_pred HhcccccchhhhhhhhccccccccCCChhhhccccchhhhcccchhccCcE--EEEEEECCCchHHHHHHHHHHHHHhch
Confidence 45567799999887754333 34556665555554443344555655543 356677 78899999999999987632
Q ss_pred ---CcEEEEEccCC
Q 041678 246 ---RRIITVVGCAG 256 (402)
Q Consensus 246 ---~~~i~V~g~~~ 256 (402)
+=+-+|+|+..
T Consensus 119 e~v~i~~lviGG~n 132 (146)
T PF12049_consen 119 EYVGIKQLVIGGEN 132 (146)
T ss_pred hheeeEEEEECCcc
Confidence 33446777543
No 53
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=34.09 E-value=2.9e+02 Score=23.42 Aligned_cols=59 Identities=14% Similarity=0.322 Sum_probs=36.1
Q ss_pred EEEEECCCCHHHHHHHHHHHhhhCCCcEEEEEccC-C-CCCCCChHHHHHHHhhcCCEEEEccC
Q 041678 221 GVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCA-G-ESDRGKRPLMTKIATDKSDVTILTSD 282 (402)
Q Consensus 221 ~vi~D~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~-~-~~~~~~~~~~~~~~~~~~d~vi~~~~ 282 (402)
.++. .+.+|+.+..+.+.+++.+++-. |.|.. + ..+.....++..+....+|+|++.-.
T Consensus 50 ~ifl-lG~~~~~~~~~~~~l~~~yP~l~--ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG 110 (172)
T PF03808_consen 50 RIFL-LGGSEEVLEKAAANLRRRYPGLR--IVGYHHGYFDEEEEEAIINRINASGPDIVFVGLG 110 (172)
T ss_pred eEEE-EeCCHHHHHHHHHHHHHHCCCeE--EEEecCCCCChhhHHHHHHHHHHcCCCEEEEECC
Confidence 3443 45668888888888888776432 22321 1 12223356677777788898888643
No 54
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.26 E-value=2.8e+02 Score=26.48 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=41.7
Q ss_pred cccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHhhHHHHhc
Q 041678 328 HDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDELHQA 387 (402)
Q Consensus 328 ~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (402)
++-.+...+.+.+..++--+|+..|+.+-.-.-+++.+.-|...+=++++-+.++++...
T Consensus 162 fdWpk~i~~~l~~~~~~a~vVV~lGaND~q~~~~gd~~~kf~S~~W~~eY~kRvd~~l~i 221 (354)
T COG2845 162 FDWPKAIPELLDKHPKPAAVVVMLGANDRQDFKVGDVYEKFRSDEWTKEYEKRVDAILKI 221 (354)
T ss_pred cccHHHHHHHHHhcCCccEEEEEecCCCHHhcccCCeeeecCchHHHHHHHHHHHHHHHH
Confidence 344433333344444777888899998766667788777777777888888888888743
No 55
>PRK00110 hypothetical protein; Validated
Probab=31.51 E-value=2.6e+02 Score=25.55 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhhcCCCC-------CCceeeeecCCCeEEEEEC-CCCHHHHHHHHHHH
Q 041678 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAV-------PGRCELIDEEQAFGVIVDY-AHTPDALSRLLDSV 240 (402)
Q Consensus 180 a~aA~a~a~~lgi~~~~i~~~L~~~~~~-------~gR~e~i~~~~g~~vi~D~-ahnp~s~~~~l~~l 240 (402)
+..|+..|...++|.+.|..+|....+- .-++|-.. .+|+.+|.+. -.|..-+.+-++.+
T Consensus 49 Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~~~~e~~YEg~g-P~GvaiiVe~lTDN~nRt~~~vR~~ 116 (245)
T PRK00110 49 LRLAIDKAKAANMPKDNIERAIKKGTGELDGANYEEIRYEGYG-PGGVAIIVEALTDNRNRTAAEVRHA 116 (245)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEEc-CCCeEEEEEEecCCHHHHHHHHHHH
Confidence 5557777888999999999999987653 12344444 3689999995 66776666666644
No 56
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=31.33 E-value=4.1e+02 Score=24.32 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=38.4
Q ss_pred CCCC-ceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhh-----CCCcEEEEEccCCC-CCCCChHHHHHHHhh
Q 041678 206 AVPG-RCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL-----APRRIITVVGCAGE-SDRGKRPLMTKIATD 272 (402)
Q Consensus 206 ~~~g-R~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~-----~~~~~i~V~g~~~~-~~~~~~~~~~~~~~~ 272 (402)
+..| +|.+-.......+++=++.=..-+.+.++.+... ...++++++|.... .+.-.+..+..+...
T Consensus 102 ~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~ 175 (267)
T cd06182 102 IRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKD 175 (267)
T ss_pred EecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhC
Confidence 4445 6654433234456666666677777877777642 23578888886544 333334445555543
No 57
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=29.73 E-value=1.4e+02 Score=23.10 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=22.5
Q ss_pred CCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEE
Q 041678 244 APRRIITVVGCAGESDRGKRPLMTKIATDKSDVTIL 279 (402)
Q Consensus 244 ~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~ 279 (402)
.+.++++++|..++.|. +...+++...++.|..
T Consensus 62 fP~~kfiLIGDsgq~Dp---eiY~~ia~~~P~~i~a 94 (100)
T PF09949_consen 62 FPERKFILIGDSGQHDP---EIYAEIARRFPGRILA 94 (100)
T ss_pred CCCCcEEEEeeCCCcCH---HHHHHHHHHCCCCEEE
Confidence 45667788887776664 5577777777776643
No 58
>PRK12378 hypothetical protein; Provisional
Probab=29.37 E-value=3.1e+02 Score=24.87 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhhcCCCCC------CceeeeecCCCeEEEEEC-CCCHHHHHHHHHHH
Q 041678 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVP------GRCELIDEEQAFGVIVDY-AHTPDALSRLLDSV 240 (402)
Q Consensus 180 a~aA~a~a~~lgi~~~~i~~~L~~~~~~~------gR~e~i~~~~g~~vi~D~-ahnp~s~~~~l~~l 240 (402)
+..|+..|...++|.+.|..+|..-.+-. -++|-.. .+|+.+|++. -.|..-+.+-++.+
T Consensus 47 Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~~~e~~YEgyg-PgGvaiiVe~lTDN~nRt~~~vr~~ 113 (235)
T PRK12378 47 LRFVIERAKKANVPKDVIERAIKKAKGGGGEDYEEVRYEGFG-PNGVMVIVECLTDNVNRTVANVRSA 113 (235)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhccCCCCCceEEEEEEEEc-CCCcEEEEEECCCCHHHHHHHHHHH
Confidence 44566678889999999999999865432 2333333 3689999995 77877666666655
No 59
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=27.88 E-value=6.2e+02 Score=25.98 Aligned_cols=86 Identities=22% Similarity=0.356 Sum_probs=51.2
Q ss_pred CCCHHHHHHHhhcCC--C--CCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHH
Q 041678 191 GAPLEDIVRGIEEVD--A--VPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLM 266 (402)
Q Consensus 191 gi~~~~i~~~L~~~~--~--~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~ 266 (402)
|++.++.++.+==+. + +.+|-.-+.. .-.-+||+.+-++.+.+.+++.+| .+++|+.+-......+++
T Consensus 337 Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~-----~~~~fAk~~~~~~~L~e~V~~vKP---tvLiG~S~~~g~Fteevl 408 (582)
T KOG1257|consen 337 GLSEEEARKKIWLVDSKGLITKGRKASLTE-----EKKPFAKDHEEIKDLEEAVKEVKP---TVLIGASGVGGAFTEEVL 408 (582)
T ss_pred CCCHHHHhccEEEEecCceeeccccCCCCh-----hhccccccChHHHHHHHHHHhcCC---cEEEecccCCccCCHHHH
Confidence 899887766543221 1 2333322211 112278999999999999987653 356677666666666777
Q ss_pred HHHHhhcCCEEEEccCCC
Q 041678 267 TKIATDKSDVTILTSDNP 284 (402)
Q Consensus 267 ~~~~~~~~d~vi~~~~~~ 284 (402)
..++..+..=+|+.-++|
T Consensus 409 ~~Ma~~~erPiIFalSNP 426 (582)
T KOG1257|consen 409 RAMAKSNERPIIFALSNP 426 (582)
T ss_pred HHHHhcCCCceEEecCCC
Confidence 776665555555544443
No 60
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=26.00 E-value=45 Score=28.29 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=38.5
Q ss_pred CCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccC
Q 041678 204 VDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSD 282 (402)
Q Consensus 204 ~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 282 (402)
.+++|+|..++-..+.. .-.++..-..++..+++..+.. .+.++|+|+ ..++..++ ..+|.+++|..
T Consensus 52 ~~pLp~R~niVlSr~~~-~~~~~~~~~~s~~~al~~~~~~--~~~i~ViGG--------~~iy~~~l-~~~d~l~lT~I 118 (161)
T PF00186_consen 52 FRPLPGRINIVLSRNPD-YEPEGVEVVSSLEEALELAKDK--DEEIFVIGG--------AEIYEQFL-PYADRLYLTRI 118 (161)
T ss_dssp GSSBTTSEEEEESSSTT-SCTTTSEEESSHHHHHHHHTTS--ESEEEEEE---------HHHHHHHH-HGESEEEEEEE
T ss_pred ccCCCCCeEEEEEcCcc-cccCCceeeCCHHHHHHHhhcc--CCcEEEECC--------HHHHHHHH-HhCCeEEEEEE
Confidence 34899999998543221 1012223344555666644432 356788874 24566555 48899988853
No 61
>PRK11890 phosphate acetyltransferase; Provisional
Probab=25.56 E-value=3.1e+02 Score=26.08 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=11.5
Q ss_pred EEEECCCCHHHHHHHHHHHhh
Q 041678 222 VIVDYAHTPDALSRLLDSVRE 242 (402)
Q Consensus 222 vi~D~ahnp~s~~~~l~~l~~ 242 (402)
+..=.++++..++++.+..++
T Consensus 25 vava~a~D~~vl~Aa~~a~~~ 45 (312)
T PRK11890 25 TAVAHPCDESSLRGAVEAAQL 45 (312)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 334455566666666655543
No 62
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=25.05 E-value=2.3e+02 Score=24.48 Aligned_cols=35 Identities=11% Similarity=0.262 Sum_probs=26.0
Q ss_pred CeEEEEECCCCHHHHHHHHHHHhhhCCC-cEEEEEc
Q 041678 219 AFGVIVDYAHTPDALSRLLDSVRELAPR-RIITVVG 253 (402)
Q Consensus 219 g~~vi~D~ahnp~s~~~~l~~l~~~~~~-~~i~V~g 253 (402)
.+.+++|-.++-..++.+++.+++...+ ..+.|+.
T Consensus 143 ~cvIVDDvittG~Ti~E~Ie~lke~g~kpv~v~VL~ 178 (203)
T COG0856 143 RCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLA 178 (203)
T ss_pred eEEEEecccccChhHHHHHHHHHHcCCCcEEEEEEE
Confidence 4566777899999999999999987653 3445553
No 63
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=24.96 E-value=2e+02 Score=24.78 Aligned_cols=58 Identities=22% Similarity=0.374 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHhhhCCCcEEEEEccCCC-CCCCChHHHHHHHhhcCCEEEEccCCCC
Q 041678 226 YAHTPDALSRLLDSVRELAPRRIITVVGCAGE-SDRGKRPLMTKIATDKSDVTILTSDNPM 285 (402)
Q Consensus 226 ~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~-~~~~~~~~~~~~~~~~~d~vi~~~~~~~ 285 (402)
.+..|+.++.+.+.+++.+++-.++ |..+. .+.....+...+....+|.+++.-..|+
T Consensus 54 lG~~~~v~~~~~~~l~~~yP~l~i~--g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 54 YGGKPDVLQQLKVKLIKEYPKLKIV--GAFGPLEPEERKAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred ECCCHHHHHHHHHHHHHHCCCCEEE--EECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcH
Confidence 4778999999999998877653322 32222 2222245567777788898888744444
No 64
>PRK13699 putative methylase; Provisional
Probab=24.01 E-value=1.8e+02 Score=26.17 Aligned_cols=72 Identities=13% Similarity=0.206 Sum_probs=37.7
Q ss_pred cHHHHHHHHHH-hCCCCcEEE--EecCCCcceEEeCCEeeec---CcHHHHHHHHHhhHHHH-hcCCCCccccccCCCC
Q 041678 330 IRRVAVRCAVA-MGEEGDMVV--VAGKGHETYQIEGDKKEFF---DDREESREALQYVDELH-QAGIDTSEFPWRLPES 401 (402)
Q Consensus 330 ~~~~a~~~a~~-~~~~gD~VL--v~Gsg~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 401 (402)
-+.+.++.+.+ ...+||+|| ++|||..-.--..--++++ -+.+.++-+.+.+.++. +..-.-+.-.|-.||.
T Consensus 148 kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T PRK13699 148 KPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAVQRAMQQGAANDDWFMPEA 226 (227)
T ss_pred CcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhhcccchhccccCccc
Confidence 34566666654 477999999 8899852221111112222 22334444545544433 3344445566777763
No 65
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=23.47 E-value=2.8e+02 Score=28.14 Aligned_cols=40 Identities=8% Similarity=0.174 Sum_probs=30.0
Q ss_pred CCeEEEEECCCCHHHHHHHHHHHhhhCCCcEEEEEccCCC
Q 041678 218 QAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGE 257 (402)
Q Consensus 218 ~g~~vi~D~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~ 257 (402)
+.+.+|||.-..=..++++.+.|++...+.+.+-++++.-
T Consensus 357 k~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sPpi 396 (474)
T PRK06388 357 KRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSPHI 396 (474)
T ss_pred ceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 3588888888888888888899987665667777765443
No 66
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=23.30 E-value=5.6e+02 Score=26.35 Aligned_cols=104 Identities=21% Similarity=0.322 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHhhhCCCcEEEEE-----ccCCCCCCC---ChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHH
Q 041678 226 YAHTPDALSRLLDSVRELAPRRIITVV-----GCAGESDRG---KRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297 (402)
Q Consensus 226 ~ahnp~s~~~~l~~l~~~~~~~~i~V~-----g~~~~~~~~---~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~ 297 (402)
+.|-|..+.++.+.+.+..+-++.++- |...-||.- .++-+.++.......|.+|++++... ..++.+
T Consensus 408 ~g~~p~~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TA--a~IA~E-- 483 (681)
T COG2216 408 GGHIPEDLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTA--AAIAAE-- 483 (681)
T ss_pred CCCCCHHHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHH--HHHHHH--
Confidence 456788888888888775544544432 211113322 25567777777889999999986432 222221
Q ss_pred hcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCC
Q 041678 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355 (402)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~ 355 (402)
+|++ + +....++++-++..++...+|-+|-.||-|-
T Consensus 484 AGVD----d------------------fiAeatPEdK~~~I~~eQ~~grlVAMtGDGT 519 (681)
T COG2216 484 AGVD----D------------------FIAEATPEDKLALIRQEQAEGRLVAMTGDGT 519 (681)
T ss_pred hCch----h------------------hhhcCChHHHHHHHHHHHhcCcEEEEcCCCC
Confidence 2222 1 2223445677778888888899999999774
No 67
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=23.16 E-value=1.3e+02 Score=26.67 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceee---eecCCCeEEEEECCCCHHHHHHHHHHHhhhC
Q 041678 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCEL---IDEEQAFGVIVDYAHTPDALSRLLDSVRELA 244 (402)
Q Consensus 181 ~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~---i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~ 244 (402)
..|.+++..++++...+++..... +..++++. +.....+.+++|--++-.++.++.+.+++..
T Consensus 80 ~~A~~vA~~l~~p~~~~RK~~K~~-G~~~~~~~~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G 145 (206)
T PRK13809 80 TLATSISLKYNIPMVLRRKELKNV-DPSDAIKVEGLFTPGQTCLVINDMVSSGKSIIETAVALEEEG 145 (206)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCC-CCcCEEEEccccCCCCEEEEEEeccccCHHHHHHHHHHHHCC
Confidence 345555666777765444323222 22333432 1233458888888888899999999998754
No 68
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=23.14 E-value=4.9e+02 Score=26.68 Aligned_cols=103 Identities=15% Similarity=0.218 Sum_probs=62.8
Q ss_pred EEeCCCchHHHHHHHHHHHHHH-----HcCCCHHHHHHHhhcCCCCCCceeeee---c---------------CCCeEEE
Q 041678 167 ISSGLLGRHNIYNILAAVAVGI-----AVGAPLEDIVRGIEEVDAVPGRCELID---E---------------EQAFGVI 223 (402)
Q Consensus 167 ~~l~l~G~hn~~Na~aA~a~a~-----~lgi~~~~i~~~L~~~~~~~gR~e~i~---~---------------~~g~~vi 223 (402)
+.+.....|.+.-.-.-.++.. +=|.+.+++++.+..| +++|-+.... . .+.-.++
T Consensus 427 ~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~-Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLV 505 (582)
T KOG0062|consen 427 LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSF-GLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLV 505 (582)
T ss_pred ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhc-CCCchhhhccccccCCcchhHHHHHHHhcCCCcEEE
Confidence 3455666666554333333322 2388999999999999 8877654332 0 1123456
Q ss_pred EE--CCC-CHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCC
Q 041678 224 VD--YAH-TPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDN 283 (402)
Q Consensus 224 ~D--~ah-np~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~ 283 (402)
+| .|| .-+|+.++.++++.+.++ +++| . |. .++....++.+.++.+.
T Consensus 506 LDEPTNhLD~dsl~AL~~Al~~F~GG-Vv~V-S--------Hd---~~fi~~~c~E~Wvve~g 555 (582)
T KOG0062|consen 506 LDEPTNHLDRDSLGALAKALKNFNGG-VVLV-S--------HD---EEFISSLCKELWVVEDG 555 (582)
T ss_pred ecCCCccccHHHHHHHHHHHHhcCCc-EEEE-E--------Cc---HHHHhhcCceeEEEcCC
Confidence 77 577 689999999999987644 5444 2 11 12444567777666543
No 69
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=22.33 E-value=2.1e+02 Score=28.88 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=31.4
Q ss_pred CCeEEEEECCCCHHHHHHHHHHHhhhCCCcEEEEEccCCCC
Q 041678 218 QAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGES 258 (402)
Q Consensus 218 ~g~~vi~D~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~ 258 (402)
+.+.+|||.-.+-..++++++.|++...+++++....+.-+
T Consensus 354 k~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~ 394 (469)
T PRK05793 354 KRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVK 394 (469)
T ss_pred CEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcC
Confidence 34777888988889999999999987667777777654433
No 70
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=20.63 E-value=6.9e+02 Score=23.72 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=43.4
Q ss_pred HHHHHHHHHHCCCCEEEEecc-cCCcccCCcccc-ccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEE
Q 041678 33 VQNLMAKMLHNGTEAVVMEAS-SHGLALGRCSEV-DFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVV 110 (402)
Q Consensus 33 ~~~~l~~~~~~~~d~~VlE~g-~~g~~~d~~~~~-~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~il 110 (402)
+..++..+.-.+.|+.++|+. .||-. +.+. -.|+.+++.+- |.=+++.-.|++++.- ....++
T Consensus 132 t~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~p-------g~GD~~Q~iK~GimEi-----aDi~vI 196 (323)
T COG1703 132 TREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIP-------GAGDDLQGIKAGIMEI-----ADIIVI 196 (323)
T ss_pred HHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecC-------CCCcHHHHHHhhhhhh-----hheeeE
Confidence 333455555679999999964 44442 3333 24555554443 3345667789998864 478999
Q ss_pred eCCChH
Q 041678 111 NIDDPN 116 (402)
Q Consensus 111 n~dd~~ 116 (402)
|..|..
T Consensus 197 NKaD~~ 202 (323)
T COG1703 197 NKADRK 202 (323)
T ss_pred eccChh
Confidence 988853
No 71
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.44 E-value=2.2e+02 Score=27.06 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHHhCCCCcEEEEecC
Q 041678 328 HDIRRVAVRCAVAMGEEGDMVVVAGK 353 (402)
Q Consensus 328 ~~~~~~a~~~a~~~~~~gD~VLv~Gs 353 (402)
....++.++.....+++.|+|+++||
T Consensus 113 ~~~~~~~l~~~~~~l~~~d~VvlsGS 138 (310)
T COG1105 113 EAELEQFLEQLKALLESDDIVVLSGS 138 (310)
T ss_pred HHHHHHHHHHHHHhcccCCEEEEeCC
Confidence 34456677788887899999999998
No 72
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=20.43 E-value=1.3e+02 Score=26.17 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhhcCCCCCCcee-eeecCCCeEEEEECCCCHHHHHHHHHHHhhhC
Q 041678 180 ILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCE-LIDEEQAFGVIVDYAHTPDALSRLLDSVRELA 244 (402)
Q Consensus 180 a~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e-~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~ 244 (402)
...|.+++..+|++.--+++.-..+ +..+..+ .+...+.+.+++|--++-.++.++++.+++..
T Consensus 85 iplA~~vA~~l~~p~v~vRK~~k~~-g~~~~~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~G 149 (187)
T PRK13810 85 VPLATAVSLETGLPLLIVRKSVKDY-GTGSRFVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAG 149 (187)
T ss_pred HHHHHHHHHHhCCCEEEEecCCCcc-CCCceEEccCCCcCEEEEEEeccCCChHHHHHHHHHHHCC
Confidence 3456666667887764444444444 2222221 12233458888889999999999999998754
Done!