Query 041678
Match_columns 402
No_of_seqs 215 out of 1878
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 16:14:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e8c_A UDP-N-acetylmuramoylala 100.0 6.6E-55 2.3E-59 438.6 42.1 356 1-380 133-492 (498)
2 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 3.4E-54 1.2E-58 436.2 41.2 358 1-381 171-531 (535)
3 2vos_A Folylpolyglutamate synt 100.0 1.6E-46 5.4E-51 375.5 28.4 307 27-369 148-483 (487)
4 1jbw_A Folylpolyglutamate synt 100.0 4.1E-46 1.4E-50 368.1 26.9 294 26-368 116-423 (428)
5 3nrs_A Dihydrofolate:folylpoly 100.0 1.3E-45 4.3E-50 364.9 25.9 319 1-368 77-435 (437)
6 3hn7_A UDP-N-acetylmuramate-L- 100.0 1.3E-42 4.3E-47 350.5 37.7 328 3-355 123-505 (524)
7 1gg4_A UDP-N-acetylmuramoylala 100.0 1.1E-43 3.7E-48 352.8 27.2 277 42-354 149-435 (452)
8 3lk7_A UDP-N-acetylmuramoylala 100.0 1.3E-43 4.4E-48 352.2 26.2 288 43-382 159-449 (451)
9 2am1_A SP protein, UDP-N-acety 100.0 4.6E-44 1.6E-48 356.0 22.5 318 3-354 101-441 (454)
10 1o5z_A Folylpolyglutamate synt 100.0 2.1E-43 7.1E-48 349.5 26.0 290 26-364 128-427 (442)
11 4hv4_A UDP-N-acetylmuramate--L 100.0 2.7E-42 9.2E-47 345.9 32.3 282 43-355 169-470 (494)
12 1w78_A FOLC bifunctional prote 100.0 1.7E-42 5.8E-47 341.8 26.8 286 26-366 119-412 (422)
13 1p3d_A UDP-N-acetylmuramate--a 100.0 1.8E-41 6.2E-46 339.1 32.1 287 43-361 165-465 (475)
14 2f00_A UDP-N-acetylmuramate--L 100.0 3.5E-41 1.2E-45 338.2 28.8 290 43-360 166-470 (491)
15 2x5o_A UDP-N-acetylmuramoylala 100.0 1.8E-41 6.2E-46 335.8 18.1 285 43-382 149-437 (439)
16 1j6u_A UDP-N-acetylmuramate-al 100.0 1.9E-37 6.4E-42 309.1 31.5 268 43-355 162-442 (469)
17 3eag_A UDP-N-acetylmuramate:L- 99.9 6.7E-25 2.3E-29 208.6 19.4 159 42-209 163-326 (326)
18 3mvn_A UDP-N-acetylmuramate:L- 99.8 2.3E-20 7.8E-25 159.2 15.2 136 194-355 11-149 (163)
19 2e2z_A TIM15; protein import, 42.6 3.5 0.00012 30.5 -0.9 53 345-401 34-90 (100)
20 4a2c_A Galactitol-1-phosphate 25.5 2.4E+02 0.0081 25.3 8.4 37 217-256 227-263 (346)
21 3dah_A Ribose-phosphate pyroph 21.3 1.8E+02 0.0063 26.3 6.5 106 167-284 170-279 (319)
No 1
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=6.6e-55 Score=438.59 Aligned_cols=356 Identities=35% Similarity=0.526 Sum_probs=297.6
Q ss_pred CCCceEEEeccceEeCCceecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchh
Q 041678 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM 80 (402)
Q Consensus 1 ~g~~~g~~~t~g~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl 80 (402)
.|.++|+.||.|..+++. ..+...++|++.+++.++..|.+.++|++|+|+|++++...+...++|+++|||||++||+
T Consensus 133 ~g~~~~~~gs~~~~i~~~-~~~~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~~p~vaViTNI~~DHl 211 (498)
T 1e8c_A 133 LGEISAVMGTVGNGLLGK-VIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHL 211 (498)
T ss_dssp TTCCEEEEETTEEEETTC-CBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTCBCSEEEECCCCSCCH
T ss_pred CCCCEEEECCCCcccCCe-eeecCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCchhhcccccccCCCEEEEeCCChhhh
Confidence 478999999999998753 3455679999999999888898999999999999866522344457899999999999999
Q ss_pred ccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccC-CCCCEEEEeccCCCC---ceEEeeEEeecCceEE
Q 041678 81 DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGN-PDVPVVTFAMENKKA---DVHPLKFELSLFETQV 156 (402)
Q Consensus 81 ~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~-~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~ 156 (402)
++|||+|+|+.+|++||+. ++++.+|+|.||+....+.+... .++++++|+.. ..+ ++....+.....+..|
T Consensus 212 d~~gt~e~ia~aK~~i~~~---~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~~-~~~~~~d~~~~~~~~~~~g~~f 287 (498)
T 1e8c_A 212 DYHGDMEHYEAAKWLLYSE---HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHIN-PNCHGRWLKATEVNYHDSGATI 287 (498)
T ss_dssp HHHSSHHHHHHHHHHHHHT---SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCCC-TTTCSEEEEEEEEEECSSCEEE
T ss_pred hccCCHHHHHHHHHHHhcc---CCCCeEEEECCCHHHHHHHHhhhccCCcEEEEecC-CCCCcCCEEEEEEEEcCCceEE
Confidence 9999999999999999985 23578999999998888765431 11267788863 234 6766666555566677
Q ss_pred EEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHH
Q 041678 157 LVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL 236 (402)
Q Consensus 157 ~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~ 236 (402)
.+...++.+.+.++++|.||++|+++|++++..+|++.+.|+++|++|+++|||||++...+++++|+||||||+|++++
T Consensus 288 ~~~~~~~~~~~~l~l~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~gR~e~v~~~~~~~vi~DyahnP~s~~a~ 367 (498)
T 1e8c_A 288 RFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKA 367 (498)
T ss_dssp EEEETTCCEEEEECSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHGGGCCCCTTSSEEECCTTSCEEEEECCCSHHHHHHH
T ss_pred EEEECCceEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEcCCCCEEEEECCCCHHHHHHH
Confidence 77655556678999999999999999999999999999999999999999999999998655779999999999999999
Q ss_pred HHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCC
Q 041678 237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYY 316 (402)
Q Consensus 237 l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 316 (402)
++++++++++|+++|||++++|+..++.++..++...+|.++++++++|.+++..+.+.+..++..
T Consensus 368 l~~l~~~~~~r~i~V~G~g~dr~~~~~~~~~~~~~~~~d~vi~~~~~~r~e~~~~i~~~~~~~~~~-------------- 433 (498)
T 1e8c_A 368 LQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD-------------- 433 (498)
T ss_dssp HHHHHHTCSSCEEEEECCCSSSCSTHHHHHHHHHHHHCSEEEECCSCCBTSCHHHHHHHHHTTSSC--------------
T ss_pred HHHHHhhCCCCEEEEECCCCCcchhHHHHHHHHHHhCCCEEEEcCCCCCCCCHHHHHHHHHhhccc--------------
Confidence 999998765789999999889988877788887777899999999999999998877654332210
Q ss_pred CCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHh
Q 041678 317 PPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQY 380 (402)
Q Consensus 317 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (402)
...+..++++++|++.+.+.+++||+||++|+|++.|+.+++.+.+|+++++.+++++.
T Consensus 434 -----~~~~~~~~~~~~ai~~a~~~a~~gd~VLv~GkG~~~~q~~~~~~~~f~d~~~~~~~l~~ 492 (498)
T 1e8c_A 434 -----AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGV 492 (498)
T ss_dssp -----GGGSEECSCHHHHHHHHHHHSCTTCEEEEESCTTCCEEEETTEEEECCHHHHHHHHHTS
T ss_pred -----cCceEEECCHHHHHHHHHHhCCCCCEEEEecCCCcceEEECCEEecCChHHHHHHHHHh
Confidence 00234567899999999999999999999999999999999999999999999999764
No 2
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=3.4e-54 Score=436.22 Aligned_cols=358 Identities=38% Similarity=0.557 Sum_probs=298.1
Q ss_pred CCCceEEEeccceEeCCceecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchh
Q 041678 1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM 80 (402)
Q Consensus 1 ~g~~~g~~~t~g~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl 80 (402)
.|.++|+.||.++.+++. ..+...++|++.+++.++..|.+.++|++|+|+|++++...+...++|+++|||||+.||+
T Consensus 171 ~G~~~g~~gs~~~~i~~~-~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~~p~vaViTNI~~DHl 249 (535)
T 2wtz_A 171 AGRVAGLIGTIGIRVGGA-DLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHL 249 (535)
T ss_dssp TTCCEEEESSSCEEETTE-EECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTCCEEEEEECCCCSCCT
T ss_pred CCCCEEEECCcceeECCE-ecccCCccCcHHHHHHHHHHHHhCCCCEEEEECCCccccccccccCCcCEEEEcCCChHHh
Confidence 488999999999998764 4566789999999999988888999999999999865522344557999999999999999
Q ss_pred ccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCC-ceEEeeEEee-cCceEEEE
Q 041678 81 DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKA-DVHPLKFELS-LFETQVLV 158 (402)
Q Consensus 81 ~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 158 (402)
++|||+|+|+.+|++||+.+..++++.+|+|.||+....+.+.. . ++++|+.. ..+ ++....+... ..+..|.+
T Consensus 250 d~~gs~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~--~-~v~~~g~~-~~~~d~~~~~i~~~~~~g~~f~~ 325 (535)
T 2wtz_A 250 DFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA--A-DAITVSAA-DRPAHWRATDVAPTDAGGQQFTA 325 (535)
T ss_dssp TTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHH--S-SCEEEESS-SSCCSEEEEEEEEETTTEEEEEE
T ss_pred hhcCCHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhc--C-CEEEEecC-CCcCcEEEEEEEEcCCCCeEEEE
Confidence 99999999999999999865100457999999999888776653 2 78999973 334 6776666555 55667777
Q ss_pred EcCCee-EEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHH
Q 041678 159 NTPHGI-LEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237 (402)
Q Consensus 159 ~~~~~~-~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l 237 (402)
...++. ..+.++++|.||++|+++|++++..+|++.+.|+++|++|+ +|||||++...+++++|+||||||+|+++++
T Consensus 326 ~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~~L~~~~-~~gR~e~v~~~~~~~viiDyahNP~s~~aal 404 (535)
T 2wtz_A 326 IDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQIDRGQGFLALVDYAHKPEALRSVL 404 (535)
T ss_dssp ECTTSCEEEEEESCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTCC-CTTSSEECCSSCSSEEEEECCCSHHHHHHHH
T ss_pred EeCCceEEEEEeCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCC-CCCceEEEEcCCCcEEEEECCCCHHHHHHHH
Confidence 655444 57889999999999999999999999999999999999998 9999999987557789999999999999999
Q ss_pred HHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCC
Q 041678 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYP 317 (402)
Q Consensus 238 ~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (402)
++++ +.++|+++|||++++++..++.++.+++...+|.++++++++|.+++.++.+.+..+... .
T Consensus 405 ~~l~-~~~~r~i~V~G~~gdr~~~~~~~~~~~a~~~~d~vi~~~~~~r~e~~~~i~~~i~~g~~~--------~------ 469 (535)
T 2wtz_A 405 TTLA-HPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAE--------V------ 469 (535)
T ss_dssp HTTC-CSSSCEEEEECCCTTSCGGGHHHHHHHHHHHCSEEEECCSCCTTSCHHHHHHHHHHHHTT--------C------
T ss_pred HHhh-CCCCcEEEEECCCCccchhhHHHHHHHHHhcCCEEEEcCCCCCCCCHHHHHHHHHhhhhh--------c------
Confidence 9998 655789999999999988888888888777899999999999999998887655443210 0
Q ss_pred CCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHhh
Q 041678 318 PLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYV 381 (402)
Q Consensus 318 ~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (402)
.....+..++++++|++.+.+.+++||+||++|||++.++.+++.+.+|+++++.+++++++
T Consensus 470 --~~~~~~~~~~d~~~Ai~~a~~~a~~gD~VLv~GsGhe~~q~~~~~~~~f~d~~~~~~~l~~~ 531 (535)
T 2wtz_A 470 --GGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEAL 531 (535)
T ss_dssp --C-CCEEEECCSHHHHHHHHHHHCCTTCEEEEESCTTCCCEECC-CEECCCTTHHHHHHHHSS
T ss_pred --CCCCcEEEECCHHHHHHHHHHhCCCCCEEEEEeCCCcceEEECCEeecCChHHHHHHHHHhh
Confidence 00012456678999999999999999999999999999999999999999999999998754
No 3
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=1.6e-46 Score=375.48 Aligned_cols=307 Identities=20% Similarity=0.255 Sum_probs=239.8
Q ss_pred CCCHHHHHHHHH--HHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCC-CHHHHHHHHHHHhhhcC-C
Q 041678 27 TPDAVMVQNLMA--KMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHG-TEEEYRNAKAKLFSRMV-D 102 (402)
Q Consensus 27 ~p~~~~~~~~l~--~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~g-t~e~i~~~K~~i~~~~~-~ 102 (402)
.++.|++.++++ .|.+.++|++|+|+|++|+ .|+++.++|+++|||||+.||+++|| |+|+|+.+|++||+.+. .
T Consensus 148 ~~t~fe~~t~~a~~~f~~~~~d~~VlEvg~gg~-~d~tn~i~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~i~~~~~~~ 226 (487)
T 2vos_A 148 AMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGR-WDATNVINAPVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDG 226 (487)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCSEEEEECSSSST-TSTTCSSCCSEEEECCCCCCBCSCSSCCHHHHHHHHHTTCCCCC--
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCc-cccccccCCCEEEECCcchhhhhhhCCcHHHHHHHHHHHhhccccc
Confidence 477888877644 5778999999999999999 89999999999999999999999999 89999999999996420 0
Q ss_pred CCCceEEEeCCChHHHHHHhc-c-CCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCeeE-EEEeCCCchHHHHH
Q 041678 103 PERHRKVVNIDDPNATSFIAQ-G-NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL-EISSGLLGRHNIYN 179 (402)
Q Consensus 103 ~~~~~~iln~dd~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~hn~~N 179 (402)
++++.+|+|.||+....++.. + ..++++++|+. ++..........+..|.+...++.+ .+.++++|.||++|
T Consensus 227 k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~-----d~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~hn~~N 301 (487)
T 2vos_A 227 SPDTVAVIGRQVPKVMEVLLAESVRADASVAREDS-----EFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHN 301 (487)
T ss_dssp CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTT-----TBEEEEEEEETTEEEEEEEETTEEEEEEEECCCSHHHHHH
T ss_pred CCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecC-----ceEEEeeccccCCceEEEecCCcccceeecCCCCHHHHHH
Confidence 346789999999976554322 1 12457777763 3444444444445566666555555 68899999999999
Q ss_pred HHHHHHHHHHc-------CCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhh-CCCcEEEE
Q 041678 180 ILAAVAVGIAV-------GAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL-APRRIITV 251 (402)
Q Consensus 180 a~aA~a~a~~l-------gi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~-~~~~~i~V 251 (402)
+++|++++..+ |++.+.|+++|.+|+ ||||||++.. ++.+|+|+||||+|++++++++++. ..+++++|
T Consensus 302 a~aAiaa~~~l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v~~--~~~vi~D~AHNp~a~~a~l~~l~~~~~~~~~i~V 378 (487)
T 2vos_A 302 AVLALASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMRS--APTVFIDAAHNPAGASALAQTLAHEFDFRFLVGV 378 (487)
T ss_dssp HHHHHHHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEET--TTEEEECCCCSHHHHHHHHHHHHHSCCCSEEEEE
T ss_pred HHHHHHHHHHHhhccccCCCCHHHHHHHHHhCc-CCCceEEEcC--CCeEEEECCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 99999999988 799999999999996 9999999975 4689999999999999999999874 34689999
Q ss_pred EccCCCCCCCChHHHHHHHhhcCCEEEEcc-CCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeeccc
Q 041678 252 VGCAGESDRGKRPLMTKIATDKSDVTILTS-DNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDI 330 (402)
Q Consensus 252 ~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (402)
+|++++|+. +.++..+. ...|.+++++ +++|.+++.++.+.+....+. ..+..+++
T Consensus 379 ~G~~~dkd~--~~~~~~l~-~~~d~vilt~~~~~r~~~~~~l~~~~~~~~~~--------------------~~~~~~~~ 435 (487)
T 2vos_A 379 LSVLGDKDV--DGILAALE-PVFDSVVVTHNGSPRALDVEALALAAGERFGP--------------------DRVRTAEN 435 (487)
T ss_dssp ECCBTTBCH--HHHHHHHT-TTCSEEEECCCSCTTBCCHHHHHHHHHHHHCG--------------------GGEEECSS
T ss_pred EEecCCCCH--HHHHHHHH-hhCCEEEEeCCCCcCCCCHHHHHHHHHhhcCC--------------------CceEecCC
Confidence 999988864 45565544 4678888886 568999888776532110110 12445678
Q ss_pred HHHHHHHHHHhCCCC-------------cEEEEecCCCcceEEeCCEeeecC
Q 041678 331 RRVAVRCAVAMGEEG-------------DMVVVAGKGHETYQIEGDKKEFFD 369 (402)
Q Consensus 331 ~~~a~~~a~~~~~~g-------------D~VLv~Gsg~~~~~~~~~~~~~~~ 369 (402)
+++|++.+.+.+++| |+||+||| +|++++++.++.
T Consensus 436 ~~~Ai~~a~~~a~~~~~~~~~~~~~~~~d~vlv~GS----~y~vg~~~~~l~ 483 (487)
T 2vos_A 436 LRDAIDVATSLVDDAAADPDVAGDAFSRTGIVITGS----VVTAGAARTLFG 483 (487)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTC----CEEEEEESS----HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccCcccccccccccCCCEEEEEee----HHHHHHHHHhhh
Confidence 999999998877665 99999999 998887766553
No 4
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=4.1e-46 Score=368.10 Aligned_cols=294 Identities=16% Similarity=0.210 Sum_probs=224.6
Q ss_pred CCCCHHHHHHHHH--HHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCC-CHHHHHHHHHHHhhhcCC
Q 041678 26 TTPDAVMVQNLMA--KMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHG-TEEEYRNAKAKLFSRMVD 102 (402)
Q Consensus 26 ~~p~~~~~~~~l~--~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~g-t~e~i~~~K~~i~~~~~~ 102 (402)
..|+.|++.++++ .|.+.++|++|+|+|++|+ .|.++.++|+++|||||++||+++|| |+|+|+.+|++|++
T Consensus 116 ~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~-~d~t~~~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~---- 190 (428)
T 1jbw_A 116 FNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGD-TDSTNVITPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIK---- 190 (428)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSST-TSTTCSCCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC----
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCcc-ccccccCCCCEEEECcCcHhhhhhhCCCHHHHHHHHhcccc----
Confidence 4577788776544 5678999999999999999 78999999999999999999999999 99999999999995
Q ss_pred CCCceEEEeCCChHHHHHHhcc--CCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCeeE-EEEeCCCchHHHHH
Q 041678 103 PERHRKVVNIDDPNATSFIAQG--NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL-EISSGLLGRHNIYN 179 (402)
Q Consensus 103 ~~~~~~iln~dd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~hn~~N 179 (402)
+++.+|+|.||+....+.... ..++++++|+. ++..........+..|.+...++.+ .+.++++|.||++|
T Consensus 191 -~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~N 264 (428)
T 1jbw_A 191 -RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDR-----DFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRN 264 (428)
T ss_dssp -TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTT-----TEEEEEEEECSSSEEEEEEETTEEEEEEEESCCSTHHHHH
T ss_pred -CCceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCc-----cceeeccccccCCceEEEecCCccccccccCCCChhHHHH
Confidence 357899999999776654321 11457888874 3443322222345566666555555 78899999999999
Q ss_pred HHHHHHHHHHc-C-----CCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhhCCCcEEEEEc
Q 041678 180 ILAAVAVGIAV-G-----APLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVG 253 (402)
Q Consensus 180 a~aA~a~a~~l-g-----i~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~~~~~i~V~g 253 (402)
+++|++++..+ | ++.+.|+++|.+|+ ||||||++.. + ..+|+|+||||+|++++++++++.+++++++|+|
T Consensus 265 a~aAia~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~e~~~~-~-~~viiD~AhNp~s~~a~l~~l~~~~~~~~i~V~g 341 (428)
T 1jbw_A 265 MAIAIQTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKISD-T-PLIVIDGAHNPDGINGLITALKQLFSQPITVIAG 341 (428)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEET-T-TTEEEECCCSHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred HHHHHHHHHHHhhccCCCCCHHHHHHHHHhCc-CCCceEEecC-C-CcEEEECCcCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 99999999999 9 99999999999997 9999999976 3 4688999999999999999998765578899999
Q ss_pred cCCCCCCCChHHHHHHHhhcCCEEEE-cc-CCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccH
Q 041678 254 CAGESDRGKRPLMTKIATDKSDVTIL-TS-DNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIR 331 (402)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~d~vi~-~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (402)
++++++. ..++..+. ..+|.+++ ++ +++|..++.++.+. . .+..++++
T Consensus 342 ~~~~kd~--~~~~~~~~-~~~d~vi~~~~~~~~r~~~~~~l~~~--~-------------------------~~~~~~~~ 391 (428)
T 1jbw_A 342 ILADKDY--AAMADRLT-AAFSTVYLVPVPGTPRALPEAGYEAL--H-------------------------EGRLKDSW 391 (428)
T ss_dssp CSSSTTH--HHHHHHHH-HHCSEEEECCCSCC------------------------------------------CBCSSH
T ss_pred eCCCCCH--HHHHHHHh-hhCCEEEEECCCCCCCCCCHHHHHhh--h-------------------------CCeecCCH
Confidence 9876554 45555554 45898888 76 56677665543221 0 02245788
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeec
Q 041678 332 RVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFF 368 (402)
Q Consensus 332 ~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~ 368 (402)
++|++.+.+.+ +||+||++|| +++++++++++
T Consensus 392 ~~ai~~a~~~~-~~d~vLv~GS----~~~~~~~~~~l 423 (428)
T 1jbw_A 392 QEALAASLNDV-PDQPIVITGS----LYLASAVRQTL 423 (428)
T ss_dssp HHHHHHHHHHC-TTSCEEEEES----HHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCeEEEEee----HHHHHHHHHHH
Confidence 99999999999 9999999999 77766555444
No 5
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=1.3e-45 Score=364.88 Aligned_cols=319 Identities=19% Similarity=0.214 Sum_probs=233.9
Q ss_pred CCCceEEEeccc-------eEeCCceecCC-------------CCCCCCHHHHHHHHH--HHHHCCCCEEEEecccCCcc
Q 041678 1 MGLRTGMLSSVS-------YYIHGDNKLES-------------PRTTPDAVMVQNLMA--KMLHNGTEAVVMEASSHGLA 58 (402)
Q Consensus 1 ~g~~~g~~~t~g-------~~~~~~~~~~~-------------~~~~p~~~~~~~~l~--~~~~~~~d~~VlE~g~~g~~ 58 (402)
+|.+||+.+|-+ +.++++.+.+. ....|+.||+.++++ +|.+.++|++|+|+|++|+
T Consensus 77 ~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~~v~~~~~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggr- 155 (437)
T 3nrs_A 77 AGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGR- 155 (437)
T ss_dssp TTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSST-
T ss_pred CCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCc-
Confidence 488999999875 56665433221 135688999877644 6778999999999999999
Q ss_pred cCCccccccCEEEEeCCCcchhccCC-CHHHHHHHHHHHhhhcCCCCCceEEEeCCChH--HHHHHhccCCCCCEEEEec
Q 041678 59 LGRCSEVDFDIAVFTNLTRDHMDFHG-TEEEYRNAKAKLFSRMVDPERHRKVVNIDDPN--ATSFIAQGNPDVPVVTFAM 135 (402)
Q Consensus 59 ~d~~~~~~p~iaViTnI~~DHl~~~g-t~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~--~~~~~~~~~~~~~v~~~~~ 135 (402)
.|.+++++|+++|||||+.||+++|| |+|+|+.+|++||+. ++.+|+|.|++. +....+. .++++++|+.
T Consensus 156 ld~tnii~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~I~~~-----~~~~V~~~d~~~~~~~~~a~~--~~~~~~~~g~ 228 (437)
T 3nrs_A 156 LDATNIVDSDVAAITSIALDHTDWLGYDRESIGREKAGVFRG-----GKPAVVGEPDMPQSIADVAAE--LGAQLYRRDV 228 (437)
T ss_dssp TSGGGGSCCSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCT-----TSEEEECCSSCCHHHHHHHHH--HTCEEEEBTT
T ss_pred cccccccCCCEEEEcCccHHHHHHhCCcHHHHHHHHHhhccC-----CCeEEECCccHHHHHHHHHHH--cCCcEEEecc
Confidence 79999999999999999999999999 899999999999953 578899987753 2333322 2567888875
Q ss_pred cCCCCceEEee-----EEeecCceEEEEEcCCeeEEEEeCCC--chHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCC
Q 041678 136 ENKKADVHPLK-----FELSLFETQVLVNTPHGILEISSGLL--GRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVP 208 (402)
Q Consensus 136 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~l~--G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~ 208 (402)
+ .++.... ......+..|.+..... ..+.++++ |.||+.|+++|+++ ..+|++.+.|+++|.+|+ ||
T Consensus 229 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~Na~~Alaa~~~-~~lgi~~~~i~~gL~~~~-~p 302 (437)
T 3nrs_A 229 A---WKFSQQEPFDQQEPVDQQINGWHWQCGER-QLTGLPVPNVPLANAATALAVLHY-SELPLSDEAIRQGLQAAS-LP 302 (437)
T ss_dssp T---EEEEC--------------CCEEEEETTE-EEEEECCCSSCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHCC-CT
T ss_pred c---ceeeecccccccccccccCceEEEecCCc-ceeccCCcchhHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhCC-CC
Confidence 2 2222110 01111133344443332 23445555 88888888888877 568999999999999996 99
Q ss_pred CceeeeecCCCeEEEEECCCCHHHHHHHHHHHh------hhC-CCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEc-
Q 041678 209 GRCELIDEEQAFGVIVDYAHTPDALSRLLDSVR------ELA-PRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILT- 280 (402)
Q Consensus 209 gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~------~~~-~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~- 280 (402)
||||++.. ++.+|+||||||+|+++++++++ +.+ .+++++|+|++++|+. ++++..+. ...+.++++
T Consensus 303 GR~e~v~~--~~~vi~D~AHNp~a~~all~~l~~~~~~~~~~~~~r~i~V~G~~~dkd~--~~~~~~l~-~~~~~v~~~~ 377 (437)
T 3nrs_A 303 GRFQVVSE--QPLLILDVAHNPHAARYLVNRLAQVINPVNASKQGKVRAVVGMLSDKDI--AGTLACLS-ERVDEWYCAP 377 (437)
T ss_dssp TSSEEEET--TTEEEECCCCSHHHHHHHHHHHHHTC--------CCEEEEECCBTTBCH--HHHHHHHT-TTCCEEEECC
T ss_pred CceEEEec--CCeEEEECCCCHHHHHHHHHHHHhhcchhhhcCCCCEEEEEeCCCCCCH--HHHHHHHH-hcCCEEEEeC
Confidence 99999985 35799999999999999999998 653 4789999999887764 56666655 456766665
Q ss_pred cCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEE
Q 041678 281 SDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360 (402)
Q Consensus 281 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~ 360 (402)
.+++|.+++.++.+. +. . . ..++++++|++.+.+.+++||+||++|| +|+
T Consensus 378 ~~~~r~~~~~~l~~~----~~-------------------~-~--~~~~d~~~Ai~~a~~~a~~~D~VLv~GS----~~~ 427 (437)
T 3nrs_A 378 LEGPRGASAGQLAEH----LV-------------------S-A--RQFSDVETAWRQAMQDADTQDVVIVCGS----FHT 427 (437)
T ss_dssp CSSTTBCCHHHHHTT----CS-------------------S-C--EECSSHHHHHHHHHHHCCTTCEEEEESS----HHH
T ss_pred CCCCCCCCHHHHHHH----Hh-------------------h-C--CCcCCHHHHHHHHHHhcCCCCeEEEEeh----HHH
Confidence 467899888775431 10 0 1 3567889999999999999999999999 888
Q ss_pred eCCEeeec
Q 041678 361 EGDKKEFF 368 (402)
Q Consensus 361 ~~~~~~~~ 368 (402)
+++++.++
T Consensus 428 v~~~~~~~ 435 (437)
T 3nrs_A 428 VAHVMAAL 435 (437)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77766544
No 6
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1.3e-42 Score=350.51 Aligned_cols=328 Identities=16% Similarity=0.157 Sum_probs=242.7
Q ss_pred CceEEEeccceEeCCc---------eec--------CCCCCCCCHHHHHHHHHHHHH---------CCCCEEEEecccCC
Q 041678 3 LRTGMLSSVSYYIHGD---------NKL--------ESPRTTPDAVMVQNLMAKMLH---------NGTEAVVMEASSHG 56 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~---------~~~--------~~~~~~p~~~~~~~~l~~~~~---------~~~d~~VlE~g~~g 56 (402)
+.+|+|||.|...... ... +...+||.+++-......... .++|++|+|+|+++
T Consensus 123 ~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~~~~T~~nln~~ig~~~~~~~~~~~~~~~~~~~~~V~E~ss~~ 202 (524)
T 3hn7_A 123 HVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLGTEKDDSDNSVNTGYFVIEADEYD 202 (524)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCCCSSCHHHHHHTTSSEECCCCCCSSCTTCCCCEEEEECCSCC
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEeccccCchhhhhhhhhHHhhCCCcccccccccCcEEEEECCCCC
Confidence 3579999998764321 011 134678888653221111111 13579999999988
Q ss_pred cc--cCCccc--cccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEE
Q 041678 57 LA--LGRCSE--VDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVT 132 (402)
Q Consensus 57 ~~--~d~~~~--~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~ 132 (402)
.+ ..++.. ++|+++|||||++||+|+|||+|+|+++|.+|++.+ ++++.+|+|.|||.+..+.... ...++++
T Consensus 203 ~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~gs~e~y~~aK~~i~~~~--~~~g~~VlN~DD~~~~~~~~~~-~~~~v~~ 279 (524)
T 3hn7_A 203 SAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAIQTQFHHMVRMI--PSTGKIIMPAATISLEDTLAKG-VWTPIWR 279 (524)
T ss_dssp CBTTBCCCHHHHCCCSEEEECCCCCC------CHHHHHHHHHHHHTTS--CTTSEEEEESSCHHHHHHHHTC-CCSCEEE
T ss_pred ccccccccceeeecCCEEEEcCCChHHccccCCHHHHHHHHHHHHHhC--CCCCEEEEECCCHHHHHHHHhc-cCCcEEE
Confidence 74 233333 799999999999999999999999999999999987 6789999999999988876543 2457889
Q ss_pred EeccC-------------------CCCceEEeeEEeecCceEEEEEcCCee---EEEEeCCCchHHHHHHHHHHHHHHHc
Q 041678 133 FAMEN-------------------KKADVHPLKFELSLFETQVLVNTPHGI---LEISSGLLGRHNIYNILAAVAVGIAV 190 (402)
Q Consensus 133 ~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~l~G~hn~~Na~aA~a~a~~l 190 (402)
|+... ..+++....+. ..+..|.+...++. ..+.++++|.||++|+++|++++..+
T Consensus 280 fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~--~~g~~f~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l 357 (524)
T 3hn7_A 280 TSVIDSTISSVRREDSPLENSQAENSSDWQAELIS--ADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNI 357 (524)
T ss_dssp EEEEC-------------------CCCSEEEEEEE--TTTTEEEEEETTEEEEEEEEECSCCSHHHHHHHHHHHHHHHHT
T ss_pred EecCcccccccccccccccccccCCCCcEEEEEEE--CCceEEEEEECCccceeEEEEeCCCcHHHHHhHHHHHHHHHHc
Confidence 98631 24566554442 34667777666654 47889999999999999999999999
Q ss_pred CCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhhC-CCcEEEEEccCCCC--CCCChHHHH
Q 041678 191 GAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELA-PRRIITVVGCAGES--DRGKRPLMT 267 (402)
Q Consensus 191 gi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~-~~~~i~V~g~~~~~--~~~~~~~~~ 267 (402)
|++.+.|+++|.+|++++||||++...+++++|+||||||+|++++++++++.. ++|+++|+|+++.+ ...+...+.
T Consensus 358 gi~~~~i~~~L~~~~~~~gR~e~~~~~~g~~vi~D~ahnp~~~~a~l~~l~~~~~~~r~i~V~g~~~~~~~~g~~~~~~~ 437 (524)
T 3hn7_A 358 GVSVKTACAALSAFAGIKRRMELIGDVNDILVFDDFAHHPTAITTTLDGAKKKLADRRLWAIIEPRSNTMKMGIHQDSLA 437 (524)
T ss_dssp TCCHHHHHHHHHTCCCBTTSSEEEEEETTEEEEEECCCSHHHHHHHHHHHHHHHTTSCEEEEEECCCCSSCCSCCTTHHH
T ss_pred CCCHHHHHHHHHhCCCCCceEEEEEecCCcEEEEECCCCHHHHHHHHHHHHhhcCCCCEEEEECCCCcchhhhhhHHHHH
Confidence 999999999999999999999999876789999999999999999999999874 46899999985332 222334444
Q ss_pred HHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcE
Q 041678 268 KIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347 (402)
Q Consensus 268 ~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~ 347 (402)
.. ...+|.+++++++++..++.++++.+..+... ...+.+++++++|++.+.+.+++||+
T Consensus 438 ~~-~~~aD~vil~~~~~r~~~~~~l~~~~~~~~~~-------------------~~~~~~~~~~~eai~~~~~~a~~gD~ 497 (524)
T 3hn7_A 438 QS-ATLADHTLWYEPTGLEWGLKEVIDNATIANPS-------------------IGSQQVLSSVDDIIKHICTHAKAGDA 497 (524)
T ss_dssp HH-TTTSSEEEEECCTTCCCSHHHHHHHHHHHCGG-------------------GCCEEEESCHHHHHHHHHHHCCTTCE
T ss_pred HH-HhcCCEEEEcCCCCCCCCHHHHHHHHHhhccC-------------------CCCeEEECCHHHHHHHHHHhCCCCCE
Confidence 43 36789999998888888777766543221100 01255678899999999999999999
Q ss_pred EEEecCCC
Q 041678 348 VVVAGKGH 355 (402)
Q Consensus 348 VLv~Gsg~ 355 (402)
||++|+|+
T Consensus 498 VLv~GaG~ 505 (524)
T 3hn7_A 498 IVIMSNGG 505 (524)
T ss_dssp EEEEESSC
T ss_pred EEEEcCCC
Confidence 99999975
No 7
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.1e-43 Score=352.84 Aligned_cols=277 Identities=22% Similarity=0.255 Sum_probs=213.3
Q ss_pred HCCCCEEEEecccCCcccC---CccccccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHH
Q 041678 42 HNGTEAVVMEASSHGLALG---RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNAT 118 (402)
Q Consensus 42 ~~~~d~~VlE~g~~g~~~d---~~~~~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~ 118 (402)
+.++|++|+|+|+++++ + .++.++|+++|||||++||+++|||+|+|+.+|++||+.+ ++++.+|+|.||+...
T Consensus 149 ~~~~d~~VlE~g~~~~~-~~~~~~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~--~~~~~~V~n~dd~~~~ 225 (452)
T 1gg4_A 149 TPEYDYAVIELGANHQG-EIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL--PENGIAIMNADNNDWL 225 (452)
T ss_dssp CTTCSEEEEECCCSSSS-HHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGC--CTTCEEEEETTBCCHH
T ss_pred CCCCcEEEEEeCCCCcc-hHHHHhCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhc--ccCCEEEEeCCcHHHH
Confidence 46799999999999883 4 5777899999999999999999999999999999999987 5678999999999877
Q ss_pred HHHhccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHH
Q 041678 119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIV 198 (402)
Q Consensus 119 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~ 198 (402)
.+.+.. ...++++|+.....+++....+.....+..|.+...++.+.+.++++|.||++|+++|++++..+|++.+.|+
T Consensus 226 ~~~~~~-~~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~ 304 (452)
T 1gg4_A 226 NWQSVI-GSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIK 304 (452)
T ss_dssp HHHHHH-TTSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhh-cCCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCEEEEEeCCCcHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 764211 1457899997321457776665555556677776666667889999999999999999999999999999999
Q ss_pred HHhhcCCCCCCceeeeecCCCeEEEEE-CCCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCC---ChHHHHHHHh-hc
Q 041678 199 RGIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRG---KRPLMTKIAT-DK 273 (402)
Q Consensus 199 ~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~---~~~~~~~~~~-~~ 273 (402)
++|.+|+++|||||++...+++++|+| |||||+|++++++++++.+ +++++|+|++.+.... .+..+.+.+. ..
T Consensus 305 ~~L~~~~~~~gR~e~~~~~~~~~vidDsyahnp~s~~~~l~~l~~~~-~~~i~V~G~~~e~g~~~~~~~~~~~~~~~~~~ 383 (452)
T 1gg4_A 305 AGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMP-GYRVLVVGDMAELGAESEACHVQVGEAAKAAG 383 (452)
T ss_dssp HHHTTCCCCTTSSEEEEEETTEEEEECCSCCCHHHHHHHHHHHHHSS-SEEEEEECCCCCCTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCceEEECCCCcEEEEeCCCCCHHHHHHHHHHHHhcc-CCEEEEECCccccCChhHHHHHHHHHHHHHcC
Confidence 999999999999999987678899999 9999999999999999865 7889999987542221 1123444444 36
Q ss_pred CCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCC--CcEEEEe
Q 041678 274 SDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEE--GDMVVVA 351 (402)
Q Consensus 274 ~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~--gD~VLv~ 351 (402)
+|.++++++.+ ..+.+. +. . ...++++++|++.+.+.+++ ||+||++
T Consensus 384 ~d~vi~~g~~~-----~~i~~~----~~---------------------~-~~~~~~~~~ai~~a~~~~~~~~gd~VLv~ 432 (452)
T 1gg4_A 384 IDRVLSVGKQS-----HAISTA----SG---------------------V-GEHFADKTALITRLKLLIAEQQVITILVK 432 (452)
T ss_dssp CSEEEEESSST-----HHHHHH----TT---------------------S-CEEESSHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred CCEEEEECcCH-----HHHHHH----hh---------------------c-CceeCCHHHHHHHHHHhhcccCCcEEEEE
Confidence 89999987542 233221 10 0 12357889999999999999 9999999
Q ss_pred cCC
Q 041678 352 GKG 354 (402)
Q Consensus 352 Gsg 354 (402)
||+
T Consensus 433 GS~ 435 (452)
T 1gg4_A 433 GSR 435 (452)
T ss_dssp CCG
T ss_pred cCC
Confidence 994
No 8
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=1.3e-43 Score=352.25 Aligned_cols=288 Identities=20% Similarity=0.256 Sum_probs=225.1
Q ss_pred CCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHh
Q 041678 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIA 122 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~ 122 (402)
.++|++|+|+|++++ +.++.++|+++|||||++||+++|||+|+|+.+|++|++.+ ++++.+|+|.|||....+.+
T Consensus 159 ~~~d~~VlE~~s~~l--~~~~~~~p~iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~--~~~~~~V~n~dd~~~~~~~~ 234 (451)
T 3lk7_A 159 NDKDTLVMELSSFQL--MGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQM--SSSDFLVLNFNQGISKELAK 234 (451)
T ss_dssp CTTCEEEEECCHHHH--TTCSSCCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTC--CTTSEEEEETTSHHHHHHHT
T ss_pred CCCCEEEEECCcccc--ccccccCCCEEEEcCCChhHhhhcCCHHHHHHHHHHHHhcC--CCCCEEEEECCcHHHHHHHh
Confidence 478999999999887 46888999999999999999999999999999999999986 66789999999999888765
Q ss_pred ccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCeeE--EEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 041678 123 QGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL--EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200 (402)
Q Consensus 123 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~ 200 (402)
.. ..++++|+......++... .+ .+.+ .+... .+.++++|.||++|+++|++++..+|++.+.|+++
T Consensus 235 ~~--~~~~~~~g~~~~~~~~~~~------~~-~~~~--~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~ 303 (451)
T 3lk7_A 235 TT--KATIVPFSTTEKVDGAYVQ------DK-QLFY--KGENIMSVDDIGVPGSHNVENALATIAVAKLAGISNQVIRET 303 (451)
T ss_dssp TC--SSEEEEEESSSCCSSEEEE------TT-EEEE--TTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred hc--CCeEEEEccCCCcCCEEEE------CC-EEEE--CCcEEeeccccCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 43 5678999874321122211 11 2222 12211 24579999999999999999999999999999999
Q ss_pred hhcCCCCCCceeeeecCCCeEEEEE-CCCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEE
Q 041678 201 IEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTIL 279 (402)
Q Consensus 201 L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~ 279 (402)
|.+|++++||||++...+|+++|+| |||||+|+.++++.+. .+|+++|+|++ +++...+++...+. . +|.+++
T Consensus 304 L~~f~~~~gR~e~v~~~~g~~vi~D~~a~np~a~~~al~~~~---~~rii~I~g~~-~r~~d~~~l~~~l~-~-~d~vi~ 377 (451)
T 3lk7_A 304 LSNFGGVKHRLQSLGKVHGISFYNDSKSTNILATQKALSGFD---NTKVILIAGGL-DRGNEFDELIPDIT-G-LKHMVV 377 (451)
T ss_dssp HHHCCCCTTSSEEEEEETTEEEEECTTCCSHHHHHHHHHTSC---GGGEEEEECCS-CCSCCCGGGHHHHT-T-CSEEEE
T ss_pred HHhCCCCCCcEEEEeeeCCcEEEEeCCCCCHHHHHHHHHhCC---CCCEEEEECCC-CCCCCHHHHHHHHH-h-cCEEEE
Confidence 9999999999999987788999999 6999999999988764 24588888854 44555556655543 4 888888
Q ss_pred ccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceE
Q 041678 280 TSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQ 359 (402)
Q Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~ 359 (402)
++.. ...+.+.+ ...+ ..+..++++++|++.+.+.+++||+||++|+ +.||+
T Consensus 378 ~G~~-----~~~l~~~~-~~~g---------------------~~~~~~~~~~eAv~~a~~~a~~gD~VLlspa-~as~d 429 (451)
T 3lk7_A 378 LGES-----ASRVKRAA-QKAG---------------------VTYSDALDVRDAVHKAYEVAQQGDVILLSPA-NASWD 429 (451)
T ss_dssp CSTT-----HHHHHHHH-HHTT---------------------CCEEECSSHHHHHHHHHHHCCTTCEEEECCS-SCSTT
T ss_pred ECCC-----HHHHHHHH-HhcC---------------------CceEEeCCHHHHHHHHHHhCCCCCEEEEcCc-Ccchh
Confidence 8542 23333221 1100 1255678899999999999999999999875 66788
Q ss_pred EeCCEeeecCcHHHHHHHHHhhH
Q 041678 360 IEGDKKEFFDDREESREALQYVD 382 (402)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~ 382 (402)
+ +++|.+|++.|+++++++.
T Consensus 430 ~---f~~~~~RG~~F~~~v~~l~ 449 (451)
T 3lk7_A 430 M---YKNFEVRGDEFIDTFESLR 449 (451)
T ss_dssp T---SSSHHHHHHHHHHHHHHHH
T ss_pred h---hhCHHHHHHHHHHHHHHhh
Confidence 7 6888899999999998864
No 9
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=4.6e-44 Score=356.03 Aligned_cols=318 Identities=15% Similarity=0.127 Sum_probs=229.7
Q ss_pred CceEEEeccceEeCCc----eecCC--CCCCCCHHH--HHHHHHHHH-HCCCCEEEEecccCCcccC---CccccccCEE
Q 041678 3 LRTGMLSSVSYYIHGD----NKLES--PRTTPDAVM--VQNLMAKML-HNGTEAVVMEASSHGLALG---RCSEVDFDIA 70 (402)
Q Consensus 3 ~~~g~~~t~g~~~~~~----~~~~~--~~~~p~~~~--~~~~l~~~~-~~~~d~~VlE~g~~g~~~d---~~~~~~p~ia 70 (402)
+.+|+|||.|...... .+... ..++|..+. +...+..+. +.++|++|+|+|++|++ + .++.++|+++
T Consensus 101 ~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~s~g~~n~~ig~p~t~~~~~~~~d~~VlE~g~~~~~-~~~~~~~~~~p~va 179 (454)
T 2am1_A 101 DVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLG-DIHLLSELARPKTA 179 (454)
T ss_dssp EEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTHHHHHHHTCCTTCCEEEEECCCSSTT-HHHHHHHHHCCSEE
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHhcCCEeecCCccCcccchHHHHhcCCCCCcEEEEEcCCCCcc-hHHHHhCccCCCEE
Confidence 4689999999874321 01111 123454422 112223332 46899999999999883 4 6777899999
Q ss_pred EEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeEEee
Q 041678 71 VFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELS 150 (402)
Q Consensus 71 ViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (402)
|||||++||+++|||+|+|+.+|++||+.+ ++++.+|+|.|| ....+.. ..+++++|+.. ..+++ ..+...
T Consensus 180 viTNi~~DHld~~gt~e~~a~aK~~i~~~~--~~~~~~V~n~dd-~~~~~~~---~~~~~~~~g~~-~~~d~--~~i~~~ 250 (454)
T 2am1_A 180 IVTLVGEAHLAFFKDRSEIAKGKMQIADGM--ASGSLLLAPADP-IVEDYLP---IDKKVVRFGQG-AELEI--TDLVER 250 (454)
T ss_dssp EECCCCCSSCTTCCCHHHHHHHHGGGGTTC--CTTCEEEEESCG-GGGGGCC---SSSEEEEESTT-SSBCE--EEEEEC
T ss_pred EEcCCchHhhhhcCCHHHHHHHHHHHHhhc--ccCCEEEEEcHH-HHHHHHh---cCCcEEEEeCC-CCCce--eeeEEe
Confidence 999999999999999999999999999876 567899999998 6554332 24578999963 34555 334444
Q ss_pred cCceEEEEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEE-CCCC
Q 041678 151 LFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVD-YAHT 229 (402)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahn 229 (402)
..+..|.+...++ .+.++++|.||++|+++|++++..+|++.+.|+++|++|+++|||||++...+++.+|+| ||||
T Consensus 251 ~~~~~~~~~~~~~--~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~iiDDsyahn 328 (454)
T 2am1_A 251 KDSLTFKANFLEQ--ALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADILSDVYNAN 328 (454)
T ss_dssp SSCEEEEETTCSS--EEEESSCCHHHHHHHHHHHHHHHHTTCCHHHHHHHGGGCCCCCCCSCEECCTTTCEEEEECSCCS
T ss_pred CCceEEEEEecCc--EEEecCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCccCCeeEEECCCCeEEEEeCCCCC
Confidence 4455666654433 678999999999999999999999999999999999999999999999987667889999 8999
Q ss_pred HHHHHHHHHHHhhhCC---CcEEEEEccCCCCCCCChH---HHHHHHhh-cCCEEEEccCCCCCCCHHHHHHHHHhcccc
Q 041678 230 PDALSRLLDSVRELAP---RRIITVVGCAGESDRGKRP---LMTKIATD-KSDVTILTSDNPMNEDPLDILDDMLAGVGW 302 (402)
Q Consensus 230 p~s~~~~l~~l~~~~~---~~~i~V~g~~~~~~~~~~~---~~~~~~~~-~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~ 302 (402)
|+|++++++++++.++ +|+++|+|++.+....... .+.+.+.. .+|.++++++++ ..+.+.+.....
T Consensus 329 p~s~~~~l~~l~~~~~~~~~~~i~V~G~~~e~G~~~~~~~~~~~~~~~~~~~d~vi~~g~~~-----~~i~~~~~~~~~- 402 (454)
T 2am1_A 329 PTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDI-----AQLAQLASQMFP- 402 (454)
T ss_dssp HHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCCTTHHHHHHHGGGGCCTTTCSEEEEEESTT-----HHHHHHHHHHSC-
T ss_pred HHHHHHHHHHHHhcccccCCCEEEEECCchhcCcHHHHHHHHHHHHHHhcCCCEEEEECcCH-----HHHHHHHhhccc-
Confidence 9999999999987654 6899999987543332211 23332323 489999987653 333322111000
Q ss_pred hhhhhhhcCCCCCCCCCCCCCcee---ecccHHHHHHHHHHhCCCCcEEEEecCC
Q 041678 303 TMQEYLKYGENDYYPPLPNGHRLF---LHDIRRVAVRCAVAMGEEGDMVVVAGKG 354 (402)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~a~~~~~~gD~VLv~Gsg 354 (402)
.+. ...+. ..+++++|++.+.+.+++||+||++||+
T Consensus 403 -------~~~---------~~~~~~~~~~~~~~~ai~~a~~~a~~gd~VLv~GS~ 441 (454)
T 2am1_A 403 -------IGH---------VYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSN 441 (454)
T ss_dssp -------TTC---------EEEEEBSSSCBTHHHHHHHHHHHCCTTEEEEEESSC
T ss_pred -------cCc---------ceeeecccCCCCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 000 00011 3468999999999999999999999994
No 10
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=2.1e-43 Score=349.49 Aligned_cols=290 Identities=19% Similarity=0.190 Sum_probs=217.6
Q ss_pred CCCCHHHHHHHHH--HHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCC-CHHHHHHHHHHHhhhcCC
Q 041678 26 TTPDAVMVQNLMA--KMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHG-TEEEYRNAKAKLFSRMVD 102 (402)
Q Consensus 26 ~~p~~~~~~~~l~--~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~g-t~e~i~~~K~~i~~~~~~ 102 (402)
..|+.|++.++++ .|.+.++|++|+|+|++|+ .|.++.++|+++|||||++||+++|| |+|+|+.+|++|++
T Consensus 128 ~~~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~-~d~t~~~~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~---- 202 (442)
T 1o5z_A 128 FSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGR-LDATNVVFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIK---- 202 (442)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSST-TCGGGGCCCSCEEECCCCC-------CCHHHHHHHHGGGCC----
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCC-ccccccCCCCEEEECCccHhhhhhhCcCHHHHHHHHHhhcc----
Confidence 4578888877655 5668899999999999999 78999999999999999999999999 99999999999995
Q ss_pred CCCceEEEeCCChHHHHHHhcc--CCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCeeE-EEEeCCCchHHHHH
Q 041678 103 PERHRKVVNIDDPNATSFIAQG--NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGIL-EISSGLLGRHNIYN 179 (402)
Q Consensus 103 ~~~~~~iln~dd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~hn~~N 179 (402)
+++.+|+|.||+....+.... ..++++++|+. ++..........+..|.+... +.+ .+.++++|.||++|
T Consensus 203 -~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~-----d~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~G~hn~~N 275 (442)
T 1o5z_A 203 -ERVPLVTGERKREALKVMEDVARKKSSRMYVIDK-----DFSVKVKSLKLHENRFDYCGE-NTFEDLVLTMNGPHQIEN 275 (442)
T ss_dssp -TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTT-----TBEEEEEECCTTCEEEEEESS-SEEEEEEESSCSTHHHHH
T ss_pred -CCccEEEcCCChHHHHHHHHHHHHcCCcEEEeCc-----ceeeeccccccCCceEEEecc-ccccccccCCCcHhHHHH
Confidence 357899999998876654421 12457888874 344333322333455666544 445 68899999999999
Q ss_pred HHHHHHHHH--HcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhhC-CCcEEEEEccCC
Q 041678 180 ILAAVAVGI--AVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELA-PRRIITVVGCAG 256 (402)
Q Consensus 180 a~aA~a~a~--~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~-~~~~i~V~g~~~ 256 (402)
+++|++++. .+|++.+.|+++|++|+ +|||||++... +..+|+|+||||+|++++++++++.. .+++++|+|+++
T Consensus 276 alaAia~~~~~~lgi~~~~i~~~L~~~~-~~gR~e~~~~~-~~~viiD~AhNp~s~~~~l~~l~~~~~~~~~i~V~g~~~ 353 (442)
T 1o5z_A 276 AGVALKTLEATGLPLSEKAIREGLKNAK-NLGRFEILEKN-GKMYILDGAHNPHGAESLVRSLKLYFNGEPLSLVIGILD 353 (442)
T ss_dssp HHHHHHHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEEET-TEEEEECCCCSHHHHHHHHHHHHHHCTTCCEEEEECCCT
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHhCC-CCCceEEEEcC-CCeEEEECCcCHHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 999999999 99999999999999996 99999999763 36789999999999999999999764 368999999887
Q ss_pred CCCCCChHHHHHHHhhcCCEEEEcc-CCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHH
Q 041678 257 ESDRGKRPLMTKIATDKSDVTILTS-DNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAV 335 (402)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~d~vi~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 335 (402)
+++. ++++..+ ...+|.+++++ +++|.+++.++.+.+.. .+ ..+..++++++|+
T Consensus 354 dkd~--~~~~~~l-~~~~d~vi~~~~~~~r~~~~~~i~~~~~~-~~---------------------~~~~~~~~~~~Ai 408 (442)
T 1o5z_A 354 DKNR--EDILRKY-TGIFERVIVTRVPSPRMKDMNSLVDMAKK-FF---------------------KNVEVIEDPLEAI 408 (442)
T ss_dssp TSCH--HHHHGGG-TTTCSEEEECCCSSTTCCCHHHHHHHHHH-HC---------------------SCCEECSSHHHHH
T ss_pred CCCH--HHHHHHH-HhhCCEEEEECCCCCCCCCHHHHHHHHHh-cC---------------------CCceecCCHHHHH
Confidence 6654 4544444 34688877765 56799988877654321 10 0133557788887
Q ss_pred HHHHHhCCCCcEEEEecCCCcceEEeCCE
Q 041678 336 RCAVAMGEEGDMVVVAGKGHETYQIEGDK 364 (402)
Q Consensus 336 ~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~ 364 (402)
+.+ ||+||++|| +++++++
T Consensus 409 ~~a------~d~VLv~GS----~~~~~~~ 427 (442)
T 1o5z_A 409 EST------ERATVVTGS----LFLVGYV 427 (442)
T ss_dssp HTC------CSEEEEESC----HHHHHHH
T ss_pred HhC------CCEEEEEee----HHHHHHH
Confidence 655 899999998 7765444
No 11
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=2.7e-42 Score=345.94 Aligned_cols=282 Identities=21% Similarity=0.297 Sum_probs=223.9
Q ss_pred CCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccC-CCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHH
Q 041678 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFH-GTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~-gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~ 121 (402)
.++|++|+|+|+++. ....++|+++|||||++||+++| +|+|+|+.+|++|++.+ ++++.+|+|.||+....+.
T Consensus 169 ~~~d~~VlE~~e~~~---s~~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~--~~~g~~V~n~dd~~~~~~~ 243 (494)
T 4hv4_A 169 GSSRYLIAEADESDA---SFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNL--PFYGRAVMCIDDPVVRELL 243 (494)
T ss_dssp CSSSEEEEECCCGGG---GGGGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTS--CTTCEEEEETTSHHHHHHG
T ss_pred CCCcEEEEEcccccc---ccccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcC--CCCCEEEEECCCHHHHHHH
Confidence 468999999998755 24568999999999999999999 79999999999999876 6678999999999988887
Q ss_pred hccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCe-eEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 041678 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHG-ILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200 (402)
Q Consensus 122 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~ 200 (402)
+.. ..++++|+. +..+++....+.....+..|.+...++ ..++.++++|.||++|+++|++++..+|++.+.|+++
T Consensus 244 ~~~--~~~~~~~g~-~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~i~~~ 320 (494)
T 4hv4_A 244 PRV--GRHITTYGF-SDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVAVATEEGIEDEDILRA 320 (494)
T ss_dssp GGC--CSCEEEEES-STTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred Hhc--CCCEEEEec-CCCCceEEEEEEEeCCEEEEEEEECCceEEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 654 567899997 345678777666666666777765543 4678899999999999999999999999999999999
Q ss_pred hhcCCCCCCceeeeecC---------CCeEEEEECCCCHHHHHHHHHHHhhhCC-CcEEEEEccCCCCCCCChHHHHHHH
Q 041678 201 IEEVDAVPGRCELIDEE---------QAFGVIVDYAHTPDALSRLLDSVRELAP-RRIITVVGCAGESDRGKRPLMTKIA 270 (402)
Q Consensus 201 L~~~~~~~gR~e~i~~~---------~g~~vi~D~ahnp~s~~~~l~~l~~~~~-~~~i~V~g~~~~~~~~~~~~~~~~~ 270 (402)
|.+|++++||||++... ++++||+||||||++++++++++++.++ +|+++|+|+..+ ...+.++..+.
T Consensus 321 L~~f~g~~~R~e~v~~~~~~~~~~~~~g~~vi~DyaHnp~~i~a~l~al~~~~~~~rii~V~g~~~~--~r~k~~~~~~~ 398 (494)
T 4hv4_A 321 LVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKAARAGWPDKRIVMLFQPHRY--TRTRDLYDDFA 398 (494)
T ss_dssp HHHCCCBTTSSEEEEEEESHHHHSCSSEEEEEEECCCSHHHHHHHHHHHHHHCTTSEEEEEECCBCH--HHHHHTHHHHH
T ss_pred HHhCCCCCCccEEeeeccccccccCCCCeEEEEeCCCCHHHHHHHHHHHHhhcCCCeEEEEEcCCCC--CchHHHHHHHH
Confidence 99999999999999864 4799999999999999999999997654 578899985432 12223344333
Q ss_pred --hhcCCEEEEccCCCCCCC------HHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhC
Q 041678 271 --TDKSDVTILTSDNPMNED------PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMG 342 (402)
Q Consensus 271 --~~~~d~vi~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~ 342 (402)
...+|.++++..+++.++ ..++.+.+.. . + ...+..++++++|++.+.+.+
T Consensus 399 ~~~~~aD~vilt~~~~~~e~p~~g~~~~~l~~~~~~-~----------g----------~~~~~~~~~~~eAv~~a~~~a 457 (494)
T 4hv4_A 399 NVLSQVDVLLMLDVYAAGEPPIPGADSRALCRTIRN-R----------G----------KLDPILVPDSESAPEMLAQIL 457 (494)
T ss_dssp HHHTTSSEEEEECCBCTTCCCCTTCSHHHHHHHHHT-T----------T----------SCCCEEECCTTTHHHHHHHHC
T ss_pred HHHhcCCEEEEeCCcCCccCCcCCccHHHHHHHHHh-h----------C----------CCCeEEeCCHHHHHHHHHHhC
Confidence 257899999987765543 3444332211 0 0 012456678899999999999
Q ss_pred CCCcEEEEecCCC
Q 041678 343 EEGDMVVVAGKGH 355 (402)
Q Consensus 343 ~~gD~VLv~Gsg~ 355 (402)
++||+||++|+|+
T Consensus 458 ~~gDvVL~~GaG~ 470 (494)
T 4hv4_A 458 NGEDLILVQGAGN 470 (494)
T ss_dssp CTTEEEEEECSST
T ss_pred CCCCEEEEECCCC
Confidence 9999999999975
No 12
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=1.7e-42 Score=341.77 Aligned_cols=286 Identities=21% Similarity=0.238 Sum_probs=218.0
Q ss_pred CCCCHHHHHHH--HHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCC-CHHHHHHHHHHHhhhcCC
Q 041678 26 TTPDAVMVQNL--MAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHG-TEEEYRNAKAKLFSRMVD 102 (402)
Q Consensus 26 ~~p~~~~~~~~--l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~g-t~e~i~~~K~~i~~~~~~ 102 (402)
..++.|++.++ +..|.+.++|++|+|+|++++ .|.++.++|+++|||||++||+++|| |+|+|+.+|++|++.
T Consensus 119 ~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~~~-~d~t~~~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~--- 194 (422)
T 1w78_A 119 ISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGR-LDATNIVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRS--- 194 (422)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSST-TSGGGGSCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCT---
T ss_pred CCCChHHHHHHHHHHHHHHcCCCEEEEecCCCcc-cccccCCCCCEEEECCcChhhhhhhCCCHHHHHHHHHhhccC---
Confidence 45777777665 445678899999999999998 78999999999999999999999999 899999999999953
Q ss_pred CCCceEEEeCCChHHHHHHhcc-CCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCeeEEEEeCCCchHHHHHHH
Q 041678 103 PERHRKVVNIDDPNATSFIAQG-NPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNIL 181 (402)
Q Consensus 103 ~~~~~~iln~dd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~ 181 (402)
++.+|+|.|++.. .+.+.+ ..++++++|+. ++... ..+..|.+...+..+ +.++++ .||++|++
T Consensus 195 --~~~~v~~~d~~~~-~~~~~a~~~~~~~~~~g~-----~~~~~-----~~~~~~~~~~~~~~~-~~l~l~-~hn~~Na~ 259 (422)
T 1w78_A 195 --EKPAIVGEPEMPS-TIADVAQEKGALLQRRGV-----EWNYS-----VTDHDWAFSDAHGTL-ENLPLP-LVPQPNAA 259 (422)
T ss_dssp --TSEEEECCSSCCH-HHHHHHHHHTCEEEEBTT-----TBEEE-----ECSSCEEEEETTEEE-EEECCC-SSCHHHHH
T ss_pred --CCcEEEcCccHHH-HHHHHHHHcCCceEEeCc-----ceeee-----ccCceEEEecCCccc-ccCCch-HHHHHHHH
Confidence 5788888776532 221111 11457788874 23211 112234443333333 577888 99999999
Q ss_pred HHHHHHHHc--CCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhhC-CCcEEEEEccCCCC
Q 041678 182 AAVAVGIAV--GAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELA-PRRIITVVGCAGES 258 (402)
Q Consensus 182 aA~a~a~~l--gi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~~-~~~~i~V~g~~~~~ 258 (402)
+|++++..+ |++.+.|+++|.+|+ +|||||++... ..+|+||||||+|++++++++++.+ ++++++|+|+++++
T Consensus 260 aAia~~~~~~~gi~~~~i~~~L~~~~-~~gR~e~~~~~--~~~i~D~Ahnp~s~~~~l~~l~~~~~~~~~i~V~g~~~~k 336 (422)
T 1w78_A 260 TALAALRASGLEVSENAIRDGIASAI-LPGRFQIVSES--PRVIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDK 336 (422)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHCC-CTTSSEEEETT--TEEEEECCCSHHHHHHHHHHHHHSCSCSCEEEEECCBTTS
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHhCC-CCceEEEEeCC--CeEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 999999886 899999999999997 89999999853 4789999999999999999999875 46899999988776
Q ss_pred CCCChHHHHHHHhhcCCEEEEcc-CCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHH
Q 041678 259 DRGKRPLMTKIATDKSDVTILTS-DNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRC 337 (402)
Q Consensus 259 ~~~~~~~~~~~~~~~~d~vi~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 337 (402)
+. ++++..+. ...|.+++++ +++|..++.++.+.+. .+..++++++|++.
T Consensus 337 d~--~~~~~~l~-~~~d~vi~~~~~~~r~~~~~~l~~~~~--------------------------~~~~~~~~~~ai~~ 387 (422)
T 1w78_A 337 DI--AGTLAWLK-SVVDDWYCAPLEGPRGATAEQLLEHLG--------------------------NGKSFDSVAQAWDA 387 (422)
T ss_dssp CH--HHHHHHHH-TTCSEEEECCCCSSSBCCHHHHHHHHS--------------------------SCEECSSHHHHHHH
T ss_pred CH--HHHHHHHH-hhCCEEEEECCCCCCCCCHHHHHHHHh--------------------------hcccCCCHHHHHHH
Confidence 54 56555554 4578877775 5678888776654310 12345788999999
Q ss_pred HHHhCCCCcEEEEecCCCcceEEeCCEee
Q 041678 338 AVAMGEEGDMVVVAGKGHETYQIEGDKKE 366 (402)
Q Consensus 338 a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~ 366 (402)
+.+.+++||+||++|| +++++++++
T Consensus 388 a~~~~~~~d~vLv~GS----~~~~~~~~~ 412 (422)
T 1w78_A 388 AMADAKAEDTVLVCGS----FHTVAHVME 412 (422)
T ss_dssp HHHHCCTTCEEEEESS----HHHHHHHHH
T ss_pred HHHhcCCCCEEEEEee----HHHHHHHHH
Confidence 9999999999999998 666554443
No 13
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=1.8e-41 Score=339.07 Aligned_cols=287 Identities=20% Similarity=0.276 Sum_probs=220.7
Q ss_pred CCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccC-CCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHH
Q 041678 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFH-GTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~-gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~ 121 (402)
.++|++|+|+|+.+. ....++|+++|||||++||+++| +|+|+|+.+|.+++..+ ++++.+|+|.|||....+.
T Consensus 165 ~~~d~~VlE~~~~~~---~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~--~~~~~~V~n~dd~~~~~~~ 239 (475)
T 1p3d_A 165 GASRYLIAEADESDA---SFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNL--PFYGLAVMCADDPVLMELV 239 (475)
T ss_dssp CSSSEEEEECCCTTS---GGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTS--CTTCEEEEETTCHHHHHHH
T ss_pred CCCCEEEEEecCCcC---ccccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhC--CCCCEEEEECCCHHHHHHH
Confidence 468999999997654 13346999999999999999999 79999999999999877 6678999999999888776
Q ss_pred hccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCe-eEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 041678 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHG-ILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200 (402)
Q Consensus 122 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~ 200 (402)
... ..++++|+.. ..+++....+.....+..|.+...++ .+.+.++++|.||++|+++|++++..+|++.+.|+++
T Consensus 240 ~~~--~~~~~~~g~~-~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~lgi~~~~i~~~ 316 (475)
T 1p3d_A 240 PKV--GRQVITYGFS-EQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEA 316 (475)
T ss_dssp HHH--CSEEEEEESS-TTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred Hhc--CCCEEEEecC-CCCcEEEEEEEEcCCceEEEEEECCCeEEEEEEcCccHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 653 4578999973 34567666555544556666654332 3578899999999999999999999999999999999
Q ss_pred hhcCCCCCCceeeeecCC----CeEEEEECCCCHHHHHHHHHHHhhh-CCCcEEEEEccCC-CCCCCChHHHHHHHhhcC
Q 041678 201 IEEVDAVPGRCELIDEEQ----AFGVIVDYAHTPDALSRLLDSVREL-APRRIITVVGCAG-ESDRGKRPLMTKIATDKS 274 (402)
Q Consensus 201 L~~~~~~~gR~e~i~~~~----g~~vi~D~ahnp~s~~~~l~~l~~~-~~~~~i~V~g~~~-~~~~~~~~~~~~~~~~~~ 274 (402)
|.+|+++|||||++...+ ++++|+||||||++++++++++++. +.+|+++|+|+++ +++......+.+.. ..+
T Consensus 317 L~~f~~~~gR~e~v~~~~~~~~~~~vi~DyaHnp~~~~a~l~al~~~~~~~~i~~v~g~~~~~r~~~~~~~~~~~~-~~~ 395 (475)
T 1p3d_A 317 LADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVL-SQV 395 (475)
T ss_dssp HHTCCCBTTSSEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHCSSCEEEEECCBCHHHHHHTHHHHHHHH-TTS
T ss_pred HHhCCCCCCCCEEEecccccCCCcEEEEeCCCCHHHHHHHHHHHHhhcCCCeEEEEECCCCCccHHHHHHHHHHHH-HhC
Confidence 999999999999998632 7899999999999999999999975 3468899998643 23322223344444 368
Q ss_pred CEEEEccCCCCCCC------HHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEE
Q 041678 275 DVTILTSDNPMNED------PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMV 348 (402)
Q Consensus 275 d~vi~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~V 348 (402)
|.++++..+++.++ ...+.+.+.. .+. ..+..++++++|++.+.+.+++||+|
T Consensus 396 d~vi~t~~~~~~e~~~~g~~~~~l~~~~~~-----------~~~----------~~~~~~~~~~~ai~~a~~~a~~gd~V 454 (475)
T 1p3d_A 396 DALIMLDVYAAGEAPIVGADSKSLCRSIRN-----------LGK----------VDPILVSDTSQLGDVLDQIIQDGDLI 454 (475)
T ss_dssp SEEEEECCBCTTCCCCTTCSHHHHHHHHHH-----------HTS----------CCCEEESCGGGHHHHHHHHCCTTCEE
T ss_pred CEEEEcCCcCCCCCCCCCCCHHHHHHHHHh-----------hCC----------CceEEECCHHHHHHHHHHhCCCCCEE
Confidence 99999887776543 3343332111 000 01334577899999999999999999
Q ss_pred EEecCCCcceEEe
Q 041678 349 VVAGKGHETYQIE 361 (402)
Q Consensus 349 Lv~Gsg~~~~~~~ 361 (402)
|++|||. ++++
T Consensus 455 Lv~G~Gs--~~~v 465 (475)
T 1p3d_A 455 LAQGAGS--VSKI 465 (475)
T ss_dssp EEECSST--HHHH
T ss_pred EEECCCC--HHHH
Confidence 9998875 5543
No 14
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=3.5e-41 Score=338.15 Aligned_cols=290 Identities=19% Similarity=0.260 Sum_probs=219.6
Q ss_pred CCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccC-CCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHH
Q 041678 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFH-GTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~-gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~ 121 (402)
.++|++|+|+|+.+.. ...++|+++|||||++||+++| +|+|+|+.+|++++..+ ++++.+|+|.||+....+.
T Consensus 166 ~~~d~~VlE~~~~~~~---~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~--~~~~~~V~n~dd~~~~~~~ 240 (491)
T 2f00_A 166 GHGRYLIAEADESDAS---FLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNL--PFYGRAVMCVDDPVIRELL 240 (491)
T ss_dssp CSSSEEEEECCCTTSG---GGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTS--CTTCEEEEETTSHHHHHHG
T ss_pred CCCCEEEEEeCCCccc---hhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhC--CCCCEEEEECCCHHHHHHH
Confidence 4689999999976441 2346999999999999999999 79999999999999876 6678999999999888876
Q ss_pred hccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCe-eEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 041678 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHG-ILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRG 200 (402)
Q Consensus 122 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~ 200 (402)
... ..++++|+.. ..+++....+.....+..|.+...++ .+.+.++++|.||++|+++|++++..+|++.+.|+++
T Consensus 241 ~~~--~~~~~~~g~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~ 317 (491)
T 2f00_A 241 PRV--GRQTTTYGFS-EDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRA 317 (491)
T ss_dssp GGC--CSEEEEEESS-TTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred Hhc--CCcEEEEeCC-CCCCEEEEEEEEcCCceEEEEEECCceEEEEEEccchHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 653 4678999973 34567666555444555666654332 2578899999999999999999999999999999999
Q ss_pred hhcCCCCCCceeeeecC--------CC-eEEEEECCCCHHHHHHHHHHHhhhCC-CcEEEEEccCC-CCCCCChHHHHHH
Q 041678 201 IEEVDAVPGRCELIDEE--------QA-FGVIVDYAHTPDALSRLLDSVRELAP-RRIITVVGCAG-ESDRGKRPLMTKI 269 (402)
Q Consensus 201 L~~~~~~~gR~e~i~~~--------~g-~~vi~D~ahnp~s~~~~l~~l~~~~~-~~~i~V~g~~~-~~~~~~~~~~~~~ 269 (402)
|.+|+++|||||++... ++ ++||+||||||++++++++++++.++ +++++|+|++. +++......+.+.
T Consensus 318 L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~DyaHnp~~~~a~l~al~~~~~~~~i~~v~g~~~~~r~k~~~~~~~~~ 397 (491)
T 2f00_A 318 LESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANV 397 (491)
T ss_dssp HHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEECCCSHHHHHHHHHHHHTTCCSSEEEEEECCBCHHHHTTTHHHHHHH
T ss_pred HHhCCCCCCCCEEEccccccccccCCCcEEEEEeCCCCHHHHHHHHHHHHhhcCCCeEEEEECCCCCcchHHHHHHHHHH
Confidence 99999999999999763 27 89999999999999999999998643 67889998643 2433333445544
Q ss_pred HhhcCCEEEEccCCCCCCCHH--HHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcE
Q 041678 270 ATDKSDVTILTSDNPMNEDPL--DILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDM 347 (402)
Q Consensus 270 ~~~~~d~vi~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~ 347 (402)
+ ..+|.++++..+++.++|. ...+.+.+.+. +.+ ...+..++++++|++.+.+.+++||+
T Consensus 398 ~-~~~d~vilt~~~~~~e~~~~g~~~~~l~~~~~-------~~~----------~~~~~~~~~~~~ai~~a~~~a~~gd~ 459 (491)
T 2f00_A 398 L-TQVDTLLMLEVYPAGEAPIPGADSRSLCRTIR-------GRG----------KIDPILVPDPARVAEMLAPVLTGNDL 459 (491)
T ss_dssp H-TTSSEEEECCCBCSSSCCCTTSSHHHHTTC------------------------CCEECCCSSCCHHHHGGGCCSEEE
T ss_pred H-HhCCEEEEcCCcCCCCCCCCCCCHHHHHHHHH-------hhC----------CCceEEeCCHHHHHHHHHHhCCCCCE
Confidence 4 3689999998777665431 11111211110 000 00133456778899999999999999
Q ss_pred EEEecCCCcceEE
Q 041678 348 VVVAGKGHETYQI 360 (402)
Q Consensus 348 VLv~Gsg~~~~~~ 360 (402)
||++|+|+ +++
T Consensus 460 VLv~gaGs--l~~ 470 (491)
T 2f00_A 460 ILVQGAGN--IGK 470 (491)
T ss_dssp EEEECSTT--HHH
T ss_pred EEEECCCC--HHH
Confidence 99999875 554
No 15
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=1.8e-41 Score=335.82 Aligned_cols=285 Identities=22% Similarity=0.221 Sum_probs=216.1
Q ss_pred CCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccC-CCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHH
Q 041678 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFH-GTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~-gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~ 121 (402)
.+.|++|+|+|++++ +.++.++|+++|||||++||+++| +|+|+|+.+|++|++. ++.+|+|.|||....+.
T Consensus 149 ~~~d~~VlE~~~~~l--~~~~~~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~-----~~~~V~n~dd~~~~~~~ 221 (439)
T 2x5o_A 149 DECELYVLELSSFQL--ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN-----AKVCVVNADDALTMPIR 221 (439)
T ss_dssp TTCCEEEEECCHHHH--HTCCCCCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT-----CSEEEEETTCGGGSCSC
T ss_pred CCCCEEEEECCchhh--cccccCCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcC-----CCEEEEeCCCHHHHHHh
Confidence 457999999999665 578889999999999999999999 7999999999999964 48999999999765543
Q ss_pred hccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCe-eE-EEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHH
Q 041678 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHG-IL-EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199 (402)
Q Consensus 122 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~ 199 (402)
.. ..++++|+... .++. .+... +..+.+. .+. .+ .+.++++|.||++|+++|++++..+|++.+.|++
T Consensus 222 ~~---~~~~~~~g~~~--~~~~--~~~~~--~~~~~~~-~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~ 291 (439)
T 2x5o_A 222 GA---DERCVSFGVNM--GDYH--LNHQQ--GETWLRV-KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLK 291 (439)
T ss_dssp CC---SSCCEEECSSS--SSEE--EEEET--TEEEEEE-TTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hc---CCcEEEEeCCC--cCcC--cEEEE--CCEEEEe-CCcEEEeehhcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 22 45789998632 2221 11111 2223332 222 12 1357999999999999999999999999999999
Q ss_pred HhhcCCCCCCceeeeecCCCeEEEEE-CCCCHHHHHHHHHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEE
Q 041678 200 GIEEVDAVPGRCELIDEEQAFGVIVD-YAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTI 278 (402)
Q Consensus 200 ~L~~~~~~~gR~e~i~~~~g~~vi~D-~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi 278 (402)
+|++|+++|||||++...+++++|+| |||||+|++++++.++. ++++++|+|++ ++....++++..+ ...+|.++
T Consensus 292 ~L~~f~~~~gR~e~~~~~~~~~vi~Ds~a~np~a~~~al~~l~~--~~~~i~v~g~~-~k~~~~~~~~~~l-~~~~d~vi 367 (439)
T 2x5o_A 292 ALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHV--DGTLHLLLGGD-GKSADFSPLARYL-NGDNVRLY 367 (439)
T ss_dssp HHHHCCCCTTSSEEEEEETTEEEEECTTCCSHHHHHHHHTTCCC--SSCEEEEEESB-CTTCCCGGGGGGS-CSSSEEEE
T ss_pred HHHhCCCCCCceEEEEEECCEEEEEeCCCCCHHHHHHHHHhCCc--CCCEEEEEcCC-CCCCCHHHHHHHH-HhhCCEEE
Confidence 99999999999999987678999999 89999999999998865 36889999975 5543444544443 34578888
Q ss_pred EccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcce
Q 041678 279 LTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358 (402)
Q Consensus 279 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~ 358 (402)
+++.. ...+.+ +. . ..+..++++++|++.+.+.+++||+||++|+ +.||
T Consensus 368 ~~g~~-----~~~~~~-----~~--------~------------~~~~~~~~~~~a~~~~~~~~~~gd~vL~~~a-~~S~ 416 (439)
T 2x5o_A 368 CFGRD-----GAQLAA-----LR--------P------------EVAEQTETMEQAMRLLAPRVQPGDMVLLSPA-CASL 416 (439)
T ss_dssp EESTT-----HHHHHT-----TS--------G------------GGEEECSSHHHHHHHHGGGCCTTCEEEECCS-SBST
T ss_pred EECCC-----HHHHHH-----Hh--------c------------CCccccCCHHHHHHHHHHhCCCCCEEEEcch-hhHh
Confidence 87542 222211 10 0 0133567899999999999999999999764 4468
Q ss_pred EEeCCEeeecCcHHHHHHHHHhhH
Q 041678 359 QIEGDKKEFFDDREESREALQYVD 382 (402)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~ 382 (402)
++ +.+|.+|++.|+++++++.
T Consensus 417 ~~---~~~~~~RG~~f~~~v~~l~ 437 (439)
T 2x5o_A 417 DQ---FKNFEQRGNEFARLAKELG 437 (439)
T ss_dssp TT---SSSHHHHHHHHHHHHHHHT
T ss_pred hh---hhCHHHHHHHHHHHHHHHh
Confidence 87 4677889999999998863
No 16
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.9e-37 Score=309.05 Aligned_cols=268 Identities=22% Similarity=0.274 Sum_probs=196.8
Q ss_pred CCCCEEEEecccCCcccCCccccccCEEEEeCCCcchhccCCC-HHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHH
Q 041678 43 NGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGT-EEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFI 121 (402)
Q Consensus 43 ~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl~~~gt-~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~ 121 (402)
.+.| +|+|+|+++. ....++|+++|||||++||+++||| +|+|+++|.+++..+ ..+|+|.||+....+
T Consensus 162 ~~~~-~V~E~~~~~~---~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~-----~~~V~n~dd~~~~~~- 231 (469)
T 1j6u_A 162 GNGP-VVYELDESEE---FFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNT-----DLVVTFAEDELTSHL- 231 (469)
T ss_dssp CSSC-EEEEECTTSG---GGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTC-----SEEEEETTCTTTGGG-
T ss_pred CCCC-EEEECCCccC---ccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhC-----CEEEEECCChhhccc-
Confidence 3567 9999999854 2446799999999999999999997 999999999988653 278999999865321
Q ss_pred hccCCCCCEEEEeccCCCCceEEeeEEeecCc-eEEEEEcCCeeE-EEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHH
Q 041678 122 AQGNPDVPVVTFAMENKKADVHPLKFELSLFE-TQVLVNTPHGIL-EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVR 199 (402)
Q Consensus 122 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~ 199 (402)
++++|+... +++.. .+.....+ ..|.+...++.+ .+.++++|.||++|+++|++++..+|++.+.|++
T Consensus 232 -------~~~~~g~~~--~d~~~-~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~ 301 (469)
T 1j6u_A 232 -------GDVTFGVKK--GTYTL-EMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLE 301 (469)
T ss_dssp -------CSEEECSSS--SSEEE-EEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred -------eEEEEECCC--ceEEE-EEEECCCCCEEEEEEECCeEEEEEEecCcCHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 578898633 56655 44444444 566665455443 6789999999999999999999999999999999
Q ss_pred HhhcCCCCCCceeee--ecCCCeEEEEECCCCHHHHHHHHHHHhh-hCCCcEEEEEccCC-CCCCCChHHHHHHHhhcCC
Q 041678 200 GIEEVDAVPGRCELI--DEEQAFGVIVDYAHTPDALSRLLDSVRE-LAPRRIITVVGCAG-ESDRGKRPLMTKIATDKSD 275 (402)
Q Consensus 200 ~L~~~~~~~gR~e~i--~~~~g~~vi~D~ahnp~s~~~~l~~l~~-~~~~~~i~V~g~~~-~~~~~~~~~~~~~~~~~~d 275 (402)
+|++|+++|||||++ ...++++||+||||||++++++++++++ ++.+++++|+|+.+ +++......+.... ..+|
T Consensus 302 ~L~~f~g~~gR~e~v~~~~~~g~~vi~D~aHnp~~~~a~l~al~~~~~~~~i~~I~g~g~~~r~~~~~~~l~~~~-~~~d 380 (469)
T 1j6u_A 302 ALEEFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAKAL-QLAD 380 (469)
T ss_dssp HHHHCCCCTTSSEEEEEETTTTEEEEEECCCSHHHHHHHHHHHHHHCSSSEEEEEECCBC--------CHHHHHH-TTSS
T ss_pred HHHhCCCCCCCcEEEcccccCCcEEEEeCCCCHHHHHHHHHHHHHhcCCCcEEEEEcCCCCCccHHHHHHHHHHH-hcCC
Confidence 999999999999999 5556899999999999999999999996 44467889997532 34444334455544 4689
Q ss_pred EEEEccCCCCCCCH------HHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEE
Q 041678 276 VTILTSDNPMNEDP------LDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVV 349 (402)
Q Consensus 276 ~vi~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VL 349 (402)
.+++++.+++.++| ..+.+.+.. .+ ..+..+++++++++.+ .+++||+||
T Consensus 381 ~vil~~~~~~~e~p~~g~~~~~l~~~~~~-----------~~-----------~~~~~~~~~~~a~~~~--~a~~gD~VL 436 (469)
T 1j6u_A 381 EVVVTEVYDAFEEKKNGISGKMIWDSLKS-----------LG-----------KEAYFVEKLPELEKVI--SVSENTVFL 436 (469)
T ss_dssp EEEECCCBC---------CHHHHHHHHHH-----------TT-----------CCEEECCSGGGHHHHC--CCCSSEEEE
T ss_pred EEEEcccCCCCCCcccCcCHHHHHHHHHh-----------cC-----------CcEEEECCHHHHHHHh--hCCCCCEEE
Confidence 99999877665443 333222110 00 1134456677787766 788999999
Q ss_pred EecCCC
Q 041678 350 VAGKGH 355 (402)
Q Consensus 350 v~Gsg~ 355 (402)
++|+|.
T Consensus 437 v~g~Gs 442 (469)
T 1j6u_A 437 FVGAGD 442 (469)
T ss_dssp EECSST
T ss_pred EECCCc
Confidence 988865
No 17
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=99.93 E-value=6.7e-25 Score=208.55 Aligned_cols=159 Identities=21% Similarity=0.182 Sum_probs=130.1
Q ss_pred HCCCCEEEEecccCCcc--cCCcc--ccccCEEEEeCCCcchhccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHH
Q 041678 42 HNGTEAVVMEASSHGLA--LGRCS--EVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNA 117 (402)
Q Consensus 42 ~~~~d~~VlE~g~~g~~--~d~~~--~~~p~iaViTnI~~DHl~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~ 117 (402)
..+.|++|+|+|+++.+ ..++. .++|+++|||||++||+|+|||+|+|+++|++|++.+ ++++.+|+|.||+..
T Consensus 163 ~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~~~--~~~~~~V~n~Dd~~~ 240 (326)
T 3eag_A 163 NSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTV--PSEGLIVCNGRQQSL 240 (326)
T ss_dssp TSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHTTS--CTTSEEEEESSCHHH
T ss_pred CCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHHhC--CCCCEEEEeCCCHHH
Confidence 45899999999998763 12222 3699999999999999999999999999999999987 677899999999998
Q ss_pred HHHHhccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEcCCee-EEEEeCCCchHHHHHHHHHHHHHHHcCCCHHH
Q 041678 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGI-LEISSGLLGRHNIYNILAAVAVGIAVGAPLED 196 (402)
Q Consensus 118 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~ 196 (402)
..+.+.. ...++++|+. .+++....+. ..+. |.+...++. ..+.++++|+||++|+++|++++..+|++.+.
T Consensus 241 ~~~~~~~-~~~~~~~~g~---~~d~~~~~~~--~~g~-f~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~lGi~~~~ 313 (326)
T 3eag_A 241 QDTLDKG-CWTPVEKFGT---EHGWQAGEAN--ADGS-FDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQT 313 (326)
T ss_dssp HHHHTTC-CCSCEEEESS---SSSEEEEEEC--TTSC-EEEEETTEEEEEECCCCCSHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhhc-cCCCEEEECC---CCcEEEEEec--CCcE-EEEEECCceEEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHH
Confidence 8876543 2467889984 3567655443 2345 776655553 46789999999999999999999999999999
Q ss_pred HHHHhhcCCCCCC
Q 041678 197 IVRGIEEVDAVPG 209 (402)
Q Consensus 197 i~~~L~~~~~~~g 209 (402)
|+++|++|+++++
T Consensus 314 i~~~L~~f~gv~R 326 (326)
T 3eag_A 314 ACEALGAFKNVKR 326 (326)
T ss_dssp HHHHHHTCCCEEC
T ss_pred HHHHHHhCCCCCC
Confidence 9999999977653
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.84 E-value=2.3e-20 Score=159.18 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=84.6
Q ss_pred HHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHHhhh-CCCcEEEEEccCCC--CCCCChHHHHHHH
Q 041678 194 LEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVREL-APRRIITVVGCAGE--SDRGKRPLMTKIA 270 (402)
Q Consensus 194 ~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l~~~-~~~~~i~V~g~~~~--~~~~~~~~~~~~~ 270 (402)
.+.|+++|++|++++||||++...++++||+||||||+|++++++++++. +.+|+++|||+.++ ++......+....
T Consensus 11 ~~~i~~~L~~f~gv~~R~E~i~~~~g~~vi~DyaHnP~si~a~l~al~~~~~~~riivvf~~g~~s~r~k~~~~~~~~~~ 90 (163)
T 3mvn_A 11 VDLGTENLYFQSNAQRRLEVKGVVNNITVYDDFAHHPTAITATIDALRAKVGQQRILAVLEPRSNTMKMGVHKHELATSL 90 (163)
T ss_dssp ----------------CCEEEEEETTEEEEEECCCSHHHHHHHHHHHHHHHTTSCEEEEECCC---------CHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCeEEEecCCCcEEEEcCCCCHHHHHHHHHHHHHhcCCCcEEEEECCCCcchhhHHHHHHHHHHH
Confidence 46789999999999999999987788999999999999999999999974 55789999987654 3333334454443
Q ss_pred hhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCCCCCceeecccHHHHHHHHHHhCCCCcEEEE
Q 041678 271 TDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVV 350 (402)
Q Consensus 271 ~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv 350 (402)
..+|.++++++. . .+. .+.++..+.+ ..+.+++++++|++.+.+.+++||+||+
T Consensus 91 -~~aD~vi~~~~~--~-~~~-~~~~~~~~~~---------------------~~~~~~~d~~eai~~~~~~~~~gDvVLv 144 (163)
T 3mvn_A 91 -QDADSVFIYQPP--T-IEW-QVSEVLANLA---------------------QPAISADDVDELVMRIVQQAKPNDHILI 144 (163)
T ss_dssp -TTCSEEEEECC-------C-CHHHHHTTCC---------------------SCEEEESSHHHHHHHHHHHCCTTCEEEE
T ss_pred -hcCCEEEEECCC--C-ccc-CHHHHHhhCC---------------------CCeEEECCHHHHHHHHHHhCCCCCEEEE
Confidence 468999998743 1 111 1122222111 1356778899999999999999999999
Q ss_pred ecCCC
Q 041678 351 AGKGH 355 (402)
Q Consensus 351 ~Gsg~ 355 (402)
+|||+
T Consensus 145 ~Gsg~ 149 (163)
T 3mvn_A 145 MSNGA 149 (163)
T ss_dssp ECSSC
T ss_pred ECCCC
Confidence 99976
No 19
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=42.65 E-value=3.5 Score=30.55 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=36.5
Q ss_pred CcEEEEecCCCcceEEeCCEeeecCcH-HHHHHHHHhhHHHHhcCCCC--cc-ccccCCCC
Q 041678 345 GDMVVVAGKGHETYQIEGDKKEFFDDR-EESREALQYVDELHQAGIDT--SE-FPWRLPES 401 (402)
Q Consensus 345 gD~VLv~Gsg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~ 401 (402)
..+|++.-+|+...-++.+-..||.+. ..+.+.+++.-+ .+++ +. .-|.+|||
T Consensus 34 ~GvViv~C~gC~n~HlIaDnLgwF~d~~~~IEdil~~kGe----~V~~~~~d~~~ed~pe~ 90 (100)
T 2e2z_A 34 KGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLMKANGE----QVSQDVGDLEFEDIPDS 90 (100)
T ss_dssp TSEEEEECTTTCCEEESCCSSCSGGGSCCCHHHHHHHHCC----CCSSSSCEEEESSCCHH
T ss_pred CCEEEEEcCCCccceEeehhhhhhccCCCCHHHHHHHcCC----EeeecCCCccHhhChHH
Confidence 356667678999999999999999875 366676665443 3443 22 23588886
No 20
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=25.49 E-value=2.4e+02 Score=25.26 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=28.5
Q ss_pred CCCeEEEEECCCCHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 041678 217 EQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAG 256 (402)
Q Consensus 217 ~~g~~vi~D~ahnp~s~~~~l~~l~~~~~~~~i~V~g~~~ 256 (402)
..+..++.|...++..+..+++.++. +..++++|...
T Consensus 227 ~~g~d~v~d~~G~~~~~~~~~~~l~~---~G~~v~~g~~~ 263 (346)
T 4a2c_A 227 LRFNQLILETAGVPQTVELAVEIAGP---HAQLALVGTLH 263 (346)
T ss_dssp GCSSEEEEECSCSHHHHHHHHHHCCT---TCEEEECCCCS
T ss_pred cCCcccccccccccchhhhhhheecC---CeEEEEEeccC
Confidence 35678899988899999999998864 45667777544
No 21
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=21.35 E-value=1.8e+02 Score=26.33 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=55.0
Q ss_pred EEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeee--cCCCeEEEEECCCCHHHHHHHHHHHhhhC
Q 041678 167 ISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELID--EEQAFGVIVDYAHTPDALSRLLDSVRELA 244 (402)
Q Consensus 167 ~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~--~~~g~~vi~D~ahnp~s~~~~l~~l~~~~ 244 (402)
+--|..|... .|..++..||++..-+.+. ..-.+....+++.. ..+.+.+++|--.+-.++.++.+.+++..
T Consensus 170 VVspd~Ggv~-----~A~~lA~~L~~p~~~i~K~-r~~~~~v~~~~i~g~v~gk~viiVDDii~TG~Tl~~a~~~L~~~G 243 (319)
T 3dah_A 170 VVSPDVGGVV-----RARALAKQLNCDLAIIDKR-RPKANVAEVMNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERG 243 (319)
T ss_dssp EECCSSTTHH-----HHHHHHHHTTCEEEC---------------------CCSEEEEEEEEESSCHHHHHHHHHHHHTT
T ss_pred EEEeCCCccH-----HHHHHHHHhCCCEEEEEEE-eccCCceEEEEccccCCCCEEEEEecccCchHHHHHHHHHHHHcC
Confidence 3345555433 3566777777664322210 00001111233322 12346777888888899999999999876
Q ss_pred CCcEEEEE--ccCCCCCCCChHHHHHHHhhcCCEEEEccCCC
Q 041678 245 PRRIITVV--GCAGESDRGKRPLMTKIATDKSDVTILTSDNP 284 (402)
Q Consensus 245 ~~~~i~V~--g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 284 (402)
..++.++. |... . +-...+.....|.+++|..-+
T Consensus 244 a~~v~~~~tH~v~s-~-----~a~~~l~~~~i~~vv~t~tip 279 (319)
T 3dah_A 244 AKQVFAYATHPVLS-G-----GAADRIAASALDELVVTDTIP 279 (319)
T ss_dssp CSCEEEEEEEECCC-T-----THHHHHHTSSCSEEEEESSSC
T ss_pred CCEEEEEEEeecCC-h-----HHHHHHHhCCCCEEEEecccc
Confidence 66555544 2111 1 124455556889999986544
Done!