BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041680
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2APJ|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
At4g34215 At 1.6 Angstrom Resolution
pdb|2APJ|B Chain B, X-Ray Structure Of Protein From Arabidopsis Thaliana
At4g34215 At 1.6 Angstrom Resolution
pdb|2APJ|C Chain C, X-Ray Structure Of Protein From Arabidopsis Thaliana
At4g34215 At 1.6 Angstrom Resolution
pdb|2APJ|D Chain D, X-Ray Structure Of Protein From Arabidopsis Thaliana
At4g34215 At 1.6 Angstrom Resolution
Length = 260
Score = 260 bits (664), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 128/224 (57%), Positives = 159/224 (70%), Gaps = 2/224 (0%)
Query: 24 QQLIILAGQSNMAGRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLTAKLKWVLAHEPLH 83
Q+ IL+GQ NMAGRGGV D N+ WD I+PP+C PN SILRL+A L+W AHEPLH
Sbjct: 22 NQIFILSGQXNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSADLRWEEAHEPLH 81
Query: 84 ADIDVNKTNGVGPGLPFANAVLTKVP-NFGVIGLVPCAIGGTNISQWRKGSSLYEQMIQR 142
DID K GVGPG+ FANAV ++ + VIGLVPCA GGT I +W +GS LYE+M++R
Sbjct: 82 VDIDTGKVCGVGPGMAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKR 141
Query: 143 AQVALRGGGTIRAVLWYQGESDTVNLEDAKLYKERSDMFFTDLRSDLQSPLLPIIRVALA 202
+ + + GG I+AVLWYQGESD +++ DA+ Y D +LR DL P LPII+VA+A
Sbjct: 142 TEESRKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIA 201
Query: 203 SGEGPFIEIVRKAQLSSDLPNVRCVDAMGLPLEPDGLHLTTPAQ 246
SG G +I+ VR+AQL L NV CVDA GLPL+ D LHLTT AQ
Sbjct: 202 SG-GGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQ 244
>pdb|1ZMB|A Chain A, Crystal Structure Of The Putative Acetylxylan Esterase
From Clostridium Acetobutylicum, Northeast Structural
Genomics Target Car6
pdb|1ZMB|B Chain B, Crystal Structure Of The Putative Acetylxylan Esterase
From Clostridium Acetobutylicum, Northeast Structural
Genomics Target Car6
pdb|1ZMB|C Chain C, Crystal Structure Of The Putative Acetylxylan Esterase
From Clostridium Acetobutylicum, Northeast Structural
Genomics Target Car6
pdb|1ZMB|D Chain D, Crystal Structure Of The Putative Acetylxylan Esterase
From Clostridium Acetobutylicum, Northeast Structural
Genomics Target Car6
pdb|1ZMB|E Chain E, Crystal Structure Of The Putative Acetylxylan Esterase
From Clostridium Acetobutylicum, Northeast Structural
Genomics Target Car6
pdb|1ZMB|F Chain F, Crystal Structure Of The Putative Acetylxylan Esterase
From Clostridium Acetobutylicum, Northeast Structural
Genomics Target Car6
Length = 290
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 31 GQSNMAGRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLTAKLKWVLAHEPLHADIDVNK 90
GQSN AGRG + VP LR +W EP++ D V+
Sbjct: 9 GQSNXAGRGFINE------------VPXIYNERIQXLR---NGRWQXXTEPINYDRPVS- 52
Query: 91 TNGVGPGLPFANAVLTKVPNFGVIGLVPCAIGGTNISQWRKGSSLYEQMIQRAQVALRGG 150
G+ FA+A K +IGL+PCA GG++I +W L+ + A+ A
Sbjct: 53 --GISLAGSFADAWSQKNQE-DIIGLIPCAEGGSSIDEWALDGVLFRHALTEAKFAXE-S 108
Query: 151 GTIRAVLWYQGESDTVNLEDAKLYKERSDMFFTDLRSDLQSPLLPII-----------RV 199
+ +LW+QGESD++N + K+Y ++ + LR +L P +PII R
Sbjct: 109 SELTGILWHQGESDSLN-GNYKVYYKKLLLIIEALRKELNVPDIPIIIGGLGDFLGKERF 167
Query: 200 ALASGEGPFI-EIVRKAQLSSDLPNVRCVDAMGLPLEPDGLHLTTPAQ 246
E FI + ++K D N V A GL PDG+H+ +Q
Sbjct: 168 GKGCTEYNFINKELQKFAFEQD--NCYFVTASGLTCNPDGIHIDAISQ 213
>pdb|3PT5|A Chain A, Crystal Structure Of Nans
Length = 337
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 22/132 (16%)
Query: 79 HEPLHADIDVNKTNGVGPGLPFANAVLTKVPNFGVIGLVPCAIGGTNIS----------- 127
H PL A + VG L A +L +P+ I +VPC GG+ +
Sbjct: 90 HHPL-ATNHQTQYGTVGQALHIARKLLPFIPDNAGILIVPCCRGGSAFTAGSEGTYSERH 148
Query: 128 -------QWRKGSSLYEQMIQRAQVALRGG--GTIRAVLWYQGESDTVNLEDAKLYKERS 178
+W + LY+ ++ R + AL V W QGE D + D + +
Sbjct: 149 GASHDACRWGTDTPLYQDLVSRTRAALVKNPQNKFLGVCWMQGEFDLMT-SDYASHPQHF 207
Query: 179 DMFFTDLRSDLQ 190
+ R DL+
Sbjct: 208 NHMVEAFRRDLK 219
>pdb|3NBI|A Chain A, Crystal Structure Of Human Rmi1 N-Terminus
Length = 216
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 158 WYQGESDTVNLEDAKLYKERSDMF-FTDLRSDLQSPLLPIIRVALASGE 205
W Q E++ VNL A+ K+ + + TDLR DL+ PLLP + + GE
Sbjct: 36 WIQEENNNVNLSQAQXNKQVFEQWLLTDLR-DLEHPLLPDGILEIPKGE 83
>pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|1BHG|B Chain B, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|3HN3|A Chain A, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|B Chain B, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|D Chain D, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|E Chain E, Human Beta-glucuronidase At 1.7 A Resolution
Length = 613
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 99 PFANAVLTKVPNFGVIGLVPCAIGGTNISQWRKGSSLYEQMIQRAQVALRGGGTIRAVLW 158
P+A V+ +G++ + C G + Q+ SL+ M +V R V+W
Sbjct: 367 PYAEEVMQMCDRYGIVVIDECPGVGLALPQFFNNVSLHHHMQVMEEVVRRDKNHPAVVMW 426
Query: 159 YQGESDTVNLEDAKLYKERSDMFFTDLRS-DLQSPLLPIIRVALASGEG-PFIEIV 212
+LE A Y + M +S D P+ + A+ +G P+++++
Sbjct: 427 SVANEPASHLESAGYYLK---MVIAHTKSLDPSRPVTFVSNSNYAADKGAPYVDVI 479
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,888,893
Number of Sequences: 62578
Number of extensions: 373929
Number of successful extensions: 958
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 12
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)