BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041680
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L9J9|CAES_ARATH Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana
GN=At4g34215 PE=1 SV=2
Length = 260
Score = 261 bits (668), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 129/224 (57%), Positives = 160/224 (71%), Gaps = 2/224 (0%)
Query: 24 QQLIILAGQSNMAGRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLTAKLKWVLAHEPLH 83
Q+ IL+GQSNMAGRGGV D N+ WD I+PP+C PN SILRL+A L+W AHEPLH
Sbjct: 22 NQIFILSGQSNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSADLRWEEAHEPLH 81
Query: 84 ADIDVNKTNGVGPGLPFANAVLTKVP-NFGVIGLVPCAIGGTNISQWRKGSSLYEQMIQR 142
DID K GVGPG+ FANAV ++ + VIGLVPCA GGT I +W +GS LYE+M++R
Sbjct: 82 VDIDTGKVCGVGPGMAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKR 141
Query: 143 AQVALRGGGTIRAVLWYQGESDTVNLEDAKLYKERSDMFFTDLRSDLQSPLLPIIRVALA 202
+ + + GG I+AVLWYQGESD +++ DA+ Y D +LR DL P LPII+VA+A
Sbjct: 142 TEESRKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIA 201
Query: 203 SGEGPFIEIVRKAQLSSDLPNVRCVDAMGLPLEPDGLHLTTPAQ 246
SG G +I+ VR+AQL L NV CVDA GLPL+ D LHLTT AQ
Sbjct: 202 SG-GGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQ 244
>sp|P39370|NANS_ECOLI Probable 9-O-acetyl-N-acetylneuraminic acid deacetylase
OS=Escherichia coli (strain K12) GN=nanS PE=2 SV=1
Length = 326
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 22/132 (16%)
Query: 79 HEPLHADIDVNKTNGVGPGLPFANAVLTKVPNFGVIGLVPCAIGGTNIS----------- 127
H PL A + VG L A +L +P+ I +VPC GG+ +
Sbjct: 79 HHPL-ATNHQTQYGTVGQALHIARKLLPFIPDNAGILIVPCCRGGSAFTAGSEGTYSERH 137
Query: 128 -------QWRKGSSLYEQMIQRAQVALRGG--GTIRAVLWYQGESDTVNLEDAKLYKERS 178
+W + LY+ ++ R + AL W QGE D + D + +
Sbjct: 138 GASHDACRWGTDTPLYQDLVSRTRAALAKNPQNKFLGACWMQGEFDLMT-SDYASHPQHF 196
Query: 179 DMFFTDLRSDLQ 190
+ R DL+
Sbjct: 197 NHMVEAFRRDLK 208
>sp|Q9H9A7|RMI1_HUMAN RecQ-mediated genome instability protein 1 OS=Homo sapiens GN=RMI1
PE=1 SV=3
Length = 625
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 158 WYQGESDTVNLEDAKLYKERSDM-FFTDLRSDLQSPLLPIIRVALASGE 205
W Q E++ VNL A++ K+ + TDLR DL+ PLLP + + GE
Sbjct: 33 WIQEENNNVNLSQAQMNKQVFEQWLLTDLR-DLEHPLLPDGILEIPKGE 80
>sp|P08236|BGLR_HUMAN Beta-glucuronidase OS=Homo sapiens GN=GUSB PE=1 SV=2
Length = 651
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 99 PFANAVLTKVPNFGVIGLVPCAIGGTNISQWRKGSSLYEQMIQRAQVALRGGGTIRAVLW 158
P+A V+ +G++ + C G + Q+ SL+ M +V R V+W
Sbjct: 387 PYAEEVMQMCDRYGIVVIDECPGVGLALPQFFNNVSLHHHMQVMEEVVRRDKNHPAVVMW 446
Query: 159 YQGESDTVNLEDAKLYKERSDMFFTDLRS-DLQSPLLPIIRVALASGEG-PFIEIV 212
+LE A Y + M +S D P+ + A+ +G P+++++
Sbjct: 447 SVANEPASHLESAGYYLK---MVIAHTKSLDPSRPVTFVSNSNYAADKGAPYVDVI 499
>sp|O77695|BGLR_CHLAE Beta-glucuronidase (Fragment) OS=Chlorocebus aethiops GN=GUSB PE=2
SV=1
Length = 648
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 99 PFANAVLTKVPNFGVIGLVPCAIGGTNISQWRKGSSLYEQMIQRAQVALRGGGTIRAVLW 158
P+A VL +G++ + C G + Q+ SL M +V R V+W
Sbjct: 384 PYAEEVLQMCDRYGIVVIDECPGVGLALPQFFNNVSLQNHMRVMEEVVRRDKNHPAVVMW 443
Query: 159 YQGESDTVNLEDAKLYKERSDMFFTDLRS-DLQSPLLPIIRVALASGEG-PFIEIV 212
+LE A Y + M T ++ D P+ + A+ +G P+++++
Sbjct: 444 SVANEPASHLESAGYYLK---MVITHTKALDPSRPVTFVTNSNYAADKGAPYVDVI 496
>sp|Q52894|DEGPL_RHIME Probable periplasmic serine endoprotease DegP-like OS=Rhizobium
meliloti (strain 1021) GN=degP1 PE=3 SV=2
Length = 504
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 30/73 (41%)
Query: 97 GLPFANAVLTKVPNFGVIGLVPCAIGGTNISQWRKGSSLYEQMIQRAQVALRGGGTIRAV 156
GL AN L P G G G ++ + + R ALR G T
Sbjct: 315 GLSEANGALVVEPQAGSPGEKAGIKNGDVVTALNGEPVKDPRDLARRVAALRPGSTAEVT 374
Query: 157 LWYQGESDTVNLE 169
LW G+S+TVNLE
Sbjct: 375 LWRSGKSETVNLE 387
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,692,971
Number of Sequences: 539616
Number of extensions: 4798369
Number of successful extensions: 9529
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 9522
Number of HSP's gapped (non-prelim): 11
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)