Query         041681
Match_columns 479
No_of_seqs    204 out of 2679
Neff          11.0
Searched_HMMs 46136
Date          Fri Mar 29 09:34:20 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041681hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG0156 Cytochrome P450 CYP2 s 100.0 1.1E-78 2.4E-83  576.4  42.4  410   61-474    22-463 (489)
  2 KOG0158 Cytochrome P450 CYP3/C 100.0 1.9E-75 4.1E-80  545.3  40.7  420   50-473    16-470 (499)
  3 PLN02196 abscisic acid 8'-hydr 100.0 1.9E-75   4E-80  567.0  42.0  415   57-476    27-441 (463)
  4 PLN02500 cytochrome P450 90B1  100.0 2.5E-75 5.4E-80  571.3  40.1  412   60-476    33-469 (490)
  5 PLN02774 brassinosteroid-6-oxi 100.0 1.4E-74   3E-79  561.5  41.9  413   61-476    27-443 (463)
  6 PLN02971 tryptophan N-hydroxyl 100.0 1.6E-73 3.5E-78  562.8  42.6  412   62-477    54-510 (543)
  7 PLN02183 ferulate 5-hydroxylas 100.0 1.9E-72   4E-77  553.5  41.9  416   54-475    25-483 (516)
  8 PLN03141 3-epi-6-deoxocathaste 100.0 1.2E-72 2.5E-77  546.8  39.3  411   61-474     3-428 (452)
  9 PLN02302 ent-kaurenoic acid ox 100.0 6.7E-72 1.5E-76  549.6  42.4  415   60-475    37-465 (490)
 10 PLN02687 flavonoid 3'-monooxyg 100.0 1.1E-71 2.4E-76  548.2  43.8  433   37-474     5-479 (517)
 11 PLN03234 cytochrome P450 83B1; 100.0 2.2E-71 4.9E-76  545.5  42.5  418   53-474    16-469 (499)
 12 PTZ00404 cytochrome P450; Prov 100.0 2.5E-71 5.5E-76  542.8  42.3  410   59-475    23-458 (482)
 13 PLN02966 cytochrome P450 83A1  100.0 7.4E-71 1.6E-75  540.8  40.8  426   48-475    12-471 (502)
 14 PLN00168 Cytochrome P450; Prov 100.0 1.9E-70 4.2E-75  539.6  43.6  412   60-474    30-490 (519)
 15 PLN02290 cytokinin trans-hydro 100.0 2.2E-71 4.9E-76  547.3  36.4  408   60-474    37-490 (516)
 16 PLN02394 trans-cinnamate 4-mon 100.0 2.3E-70   5E-75  538.9  42.2  413   60-478    25-477 (503)
 17 PLN00110 flavonoid 3',5'-hydro 100.0 5.9E-70 1.3E-74  532.6  42.5  417   54-475    20-471 (504)
 18 PLN02987 Cytochrome P450, fami 100.0 6.9E-70 1.5E-74  526.0  42.1  420   50-475    15-447 (472)
 19 PLN03112 cytochrome P450 famil 100.0 8.2E-70 1.8E-74  536.0  43.4  418   52-474    19-478 (514)
 20 KOG0157 Cytochrome P450 CYP4/C 100.0 5.8E-71 1.3E-75  535.0  29.7  406   63-475    33-472 (497)
 21 PLN03018 homomethionine N-hydr 100.0 5.5E-68 1.2E-72  519.4  44.9  409   63-475    38-498 (534)
 22 KOG0684 Cytochrome P450 [Secon 100.0 2.1E-68 4.6E-73  473.6  35.5  409   65-478    31-464 (486)
 23 PF00067 p450:  Cytochrome P450 100.0 1.1E-69 2.3E-74  533.1  30.2  405   67-476     1-442 (463)
 24 PLN03195 fatty acid omega-hydr 100.0 2.2E-68 4.7E-73  525.6  38.5  405   67-474    32-491 (516)
 25 PLN02169 fatty acid (omega-1)- 100.0 1.5E-67 3.2E-72  514.6  38.9  396   66-474    32-475 (500)
 26 PLN02655 ent-kaurene oxidase   100.0 6.1E-67 1.3E-71  508.3  40.0  400   67-475     1-439 (466)
 27 KOG0159 Cytochrome P450 CYP11/ 100.0 1.1E-66 2.5E-71  474.6  33.7  407   62-476    47-495 (519)
 28 PLN02738 carotene beta-ring hy 100.0   9E-66   2E-70  508.9  37.8  391   76-476   142-571 (633)
 29 PLN02936 epsilon-ring hydroxyl 100.0 1.9E-64 4.1E-69  493.0  36.5  399   67-475    14-458 (489)
 30 PLN02426 cytochrome P450, fami 100.0 6.9E-63 1.5E-67  481.0  39.5  389   73-474    49-473 (502)
 31 PLN02648 allene oxide synthase 100.0 5.3E-61 1.1E-65  460.3  26.3  392   62-477    14-465 (480)
 32 COG2124 CypX Cytochrome P450 [ 100.0   4E-56 8.7E-61  422.0  33.2  356   87-474    24-387 (411)
 33 PF08492 SRP72:  SRP72 RNA-bind  69.7     3.2   7E-05   26.9   1.5    8  423-430    44-51  (59)
 34 PHA03049 IMV membrane protein;  61.8      21 0.00046   23.5   4.1   37   40-76      6-42  (68)
 35 TIGR01478 STEVOR variant surfa  60.0     5.2 0.00011   35.2   1.5   20   45-64    271-290 (295)
 36 PF12554 MOZART1:  Mitotic-spin  59.3      34 0.00073   21.2   4.5   43  297-339     5-47  (48)
 37 PF05393 Hum_adeno_E3A:  Human   46.8      72  0.0016   22.5   4.9   17   43-59     43-59  (94)
 38 PF05952 ComX:  Bacillus compet  46.1      21 0.00046   23.0   2.2   18  321-338     5-22  (57)
 39 PF05961 Chordopox_A13L:  Chord  45.6      57  0.0012   21.7   4.1   30   40-69      6-35  (68)
 40 PF12508 DUF3714:  Protein of u  42.4      21 0.00044   30.3   2.3   44  360-404    51-94  (200)
 41 KOG0114 Predicted RNA-binding   41.2      92   0.002   23.1   5.0   63   61-126     8-76  (124)
 42 KOG3653 Transforming growth fa  38.2 1.4E+02  0.0031   29.0   7.2   37   96-132   221-257 (534)
 43 PTZ00370 STEVOR; Provisional    36.1      28 0.00061   30.9   2.2   18   46-63    268-285 (296)
 44 PF09201 SRX:  SRX;  InterPro:   35.6      32  0.0007   26.7   2.2   24  444-467    18-41  (148)
 45 COG2101 SPT15 TATA-box binding  34.1      12 0.00027   30.2  -0.2   30  421-450    36-70  (185)
 46 PF11227 DUF3025:  Protein of u  33.9      25 0.00055   29.8   1.6   23  404-426   189-211 (212)
 47 PF11138 DUF2911:  Protein of u  31.1      58  0.0013   25.9   3.1   42  384-426    51-99  (145)
 48 PF07886 BA14K:  BA14K-like pro  30.6      45 0.00098   18.5   1.7   16  432-447    16-31  (31)
 49 PF09926 DUF2158:  Uncharacteri  28.7      60  0.0013   20.7   2.2   17   98-114     3-19  (53)
 50 PRK06789 flagellar motor switc  28.2      68  0.0015   22.1   2.6   39  367-405    21-62  (74)
 51 PF13625 Helicase_C_3:  Helicas  25.4 1.5E+02  0.0032   23.0   4.5   39   88-128    77-115 (129)
 52 PF07849 DUF1641:  Protein of u  25.3      89  0.0019   18.7   2.5   19  319-337    13-31  (42)
 53 PRK13467 F0F1 ATP synthase sub  24.1 1.2E+02  0.0025   20.4   3.1   24  315-338    20-43  (66)
 54 KOG3506 40S ribosomal protein   23.7      37  0.0008   21.5   0.6   10  438-447    13-22  (56)
 55 cd04518 TBP_archaea archaeal T  22.4      45 0.00097   27.6   1.1   51  420-471    29-87  (174)
 56 PF14129 DUF4296:  Domain of un  21.8   3E+02  0.0065   19.5   7.3   50  295-344    30-79  (87)
 57 PF13893 RRM_5:  RNA recognitio  21.6 2.2E+02  0.0047   17.8   4.6   34   92-125     2-39  (56)
 58 PF05084 GRA6:  Granule antigen  21.1 2.2E+02  0.0048   22.8   4.5   30   49-78    164-193 (215)
 59 PF15330 SIT:  SHP2-interacting  20.6 2.2E+02  0.0048   21.3   4.3    9   73-81     46-54  (107)
 60 TIGR01478 STEVOR variant surfa  20.6      75  0.0016   28.3   2.1   24   42-65    265-288 (295)

No 1  
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.1e-78  Score=576.37  Aligned_cols=410  Identities=26%  Similarity=0.397  Sum_probs=343.4

Q ss_pred             CCCCCCCCCCcCCccccccccccccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCCc--c
Q 041681           61 PKDKRFPPGSMGWPYIGETLKLYTQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYPP--S  138 (479)
Q Consensus        61 ~~~~~~pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~~--~  138 (479)
                      +++.+.||||++||++||++++....++..+.+|.++|||+|++++|..+.|||+|+++++|++.+++..|++++..  .
T Consensus        22 ~~~~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~  101 (489)
T KOG0156|consen   22 RKRRNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTAT  101 (489)
T ss_pred             cCCCCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhh
Confidence            33488999999999999999985444899999999999999999999999999999999999999999999988752  2


Q ss_pred             ccccc-CCCccccc-CchHHHHHHHHHhhc-CChHHHhhhHHHHHHHHHHHhhhhcc----CccchHHHHHHHHHHHHHH
Q 041681          139 KEKMI-GPEALFFH-QGAYHSRLKKLVQAS-FLPSAIRGSVSEIEQIVLKFLPTWKN----ATINTLQEMKKYAFDVAMI  211 (479)
Q Consensus       139 ~~~~~-g~~~l~~~-~g~~~~~~R~~~~~~-f~~~~l~~~~~~~~~~~~~~l~~l~~----~~vdl~~~~~~~~~~~i~~  211 (479)
                      ...+. |..++..+ +|+.|+.+||+.... ++...+++....-.++++.+++.+.+    .+||+...+..++.++|++
T Consensus       102 ~~~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~~~~~~~vdl~~~l~~~~~nvI~~  181 (489)
T KOG0156|consen  102 LKYLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSKSKKGEPVDLSELLDLLVGNVICR  181 (489)
T ss_pred             HHHhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHhcCCCceeeHHHHHHHHHHHHHHH
Confidence            23333 44555555 999999999988765 66677777766667888888888762    6899999999999999999


Q ss_pred             HHcCCCCchhH----HhHHHHHHHHHhhccc------cC---CCCCCC--chHHHHHHHHHHHHHHHHHHHHHHhcC--C
Q 041681          212 SAFGYQHDLEM----EGIKNLYQCIEKGYNS------MP---LDLPGT--PYHKAIKAREQLNETLRRLIQKRRESG--K  274 (479)
Q Consensus       212 ~~fG~~~~~~~----~~~~~~~~~~~~~~~~------~~---~~~p~~--~~~~~~~~~~~l~~~~~~~i~~~~~~~--~  274 (479)
                      ++||.++....    .++.+...........      +|   .+++..  ..++......++.+++++.++++++..  +
T Consensus       182 ~~fG~rf~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~~~~~~~  261 (489)
T KOG0156|consen  182 MLFGRRFEEEDEEEFLELKELVEESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERIIDEHREKIGDE  261 (489)
T ss_pred             HHhCCccccCCchHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence            99999877532    2244444443332221      22   122311  223344445558888899998886642  3


Q ss_pred             CCCCHHHHHHhcccCcCCC-CCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhhhcCCCC
Q 041681          275 QIGGLLGVLLAAKDHKLNQ-LSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKIEENRGL  353 (479)
Q Consensus       275 ~~~~~l~~ll~~~~~~~~~-l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~  353 (479)
                      +.+|+++.+++..++++.. ++++++...+.++++||+|||++++.|++.+|++||++|+|+++||+++++.    ++.+
T Consensus       262 ~~~D~vD~lL~~~~~~~~~~~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~----~r~v  337 (489)
T KOG0156|consen  262 EGRDFVDALLKLMKEEKAEGLTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGK----GRLV  337 (489)
T ss_pred             CCCcHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC----CCCC
Confidence            3379999999987654433 8999999999999999999999999999999999999999999999999863    5559


Q ss_pred             CcccCCCCchHHHHHHHHhccCCCCCcc-cccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCCCCCCCCCC-
Q 041681          354 TWDDTRHMPLTTRVIQETLRTASILSFT-FREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSRFEAPP-  431 (479)
Q Consensus       354 ~~~~~~~l~~l~a~i~E~lRl~p~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~-  431 (479)
                      +.+|+.++|||+|+|+|++|++|++|.+ +|.+.+|++++||.|||||.|+++.|++||||++|+||++|+||||++.. 
T Consensus       338 ~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~d  417 (489)
T KOG0156|consen  338 SESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSND  417 (489)
T ss_pred             ChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCcc
Confidence            9999999999999999999999999976 59999999999999999999999999999999999999999999999863 


Q ss_pred             ---CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCC
Q 041681          432 ---RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSK  474 (479)
Q Consensus       432 ---~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~  474 (479)
                         ....++|||.|+|.|||..+|.+++.++++.|+++|+|++.++
T Consensus       418 ~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~  463 (489)
T KOG0156|consen  418 GKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG  463 (489)
T ss_pred             ccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC
Confidence               5678999999999999999999999999999999999999977


No 2  
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.9e-75  Score=545.26  Aligned_cols=420  Identities=24%  Similarity=0.379  Sum_probs=340.5

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCcCCcccccccccccc-CcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCC
Q 041681           50 LLLLVLLQWRQPKDKRFPPGSMGWPYIGETLKLYTQ-NPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKA  128 (479)
Q Consensus        50 ~~~~~~~~~~~~~~~~~pPgp~~~P~lG~~~~~~~~-~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~  128 (479)
                      +++.++.+...++..+..|||+++|++||+..+... .+..+..+.+.++||++.++.+-.+.++|.|||.+++|+.+..
T Consensus        16 l~y~~~~~~~~yw~rrGi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F   95 (499)
T KOG0158|consen   16 LLYLWLRWTYSYWRRRGIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDF   95 (499)
T ss_pred             HHHHHHHhhhhhhccCCCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhC
Confidence            334444444456677788999999999999988643 2445555555666999999999999999999999999999998


Q ss_pred             ccccC--CCCccccc-ccCCCcccccCchHHHHHHHHHhhcCChHHHhhhHHHHHHHHHHHhhhhcc-----CccchHHH
Q 041681          129 HLFKP--TYPPSKEK-MIGPEALFFHQGAYHSRLKKLVQASFLPSAIRGSVSEIEQIVLKFLPTWKN-----ATINTLQE  200 (479)
Q Consensus       129 ~~~~~--~~~~~~~~-~~g~~~l~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~l~~l~~-----~~vdl~~~  200 (479)
                      .+|.+  +....-.. ..+..+++..+|+.||++|..++|.|++.+++++.+.+++.++++++.+..     ..+++.+.
T Consensus        96 ~~F~~r~~~~~~d~~~~l~~~~Lf~~~g~~WK~lR~~lsP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~~~~~~~dl  175 (499)
T KOG0158|consen   96 DNFYNRKRPIYGDPEDPLSALNLFFLRGERWKRLRTKLSPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGGQEGEIKDL  175 (499)
T ss_pred             ccCcCCCCCCcCCCCCcccccCchhccCchHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCccHHHH
Confidence            88877  32211111 233478889999999999999999999999999999999999999999872     27899999


Q ss_pred             HHHHHHHHHHHHHcCCCCchhH---HhHHHHHHHHHhh-ccccCC------CCCCC-----chHHHHHHHHHHHHHHHHH
Q 041681          201 MKKYAFDVAMISAFGYQHDLEM---EGIKNLYQCIEKG-YNSMPL------DLPGT-----PYHKAIKAREQLNETLRRL  265 (479)
Q Consensus       201 ~~~~~~~~i~~~~fG~~~~~~~---~~~~~~~~~~~~~-~~~~~~------~~p~~-----~~~~~~~~~~~l~~~~~~~  265 (479)
                      +.+++.|+|++++||.+.+...   ..+.......... ....+.      ..|..     ......+..+.+.+.+.+.
T Consensus       176 ~~~yT~DVI~~~AfG~~~~s~~d~~~~F~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~l~~~~~~~~~~~~~~~~v~~~  255 (499)
T KOG0158|consen  176 CARYTTDVIGSCAFGLDANSLRDPKAEFRRMGRRAFFLSRGLFPLKFMLIFLFPKLALPLRVKLFPEDVTDFFRKLVNSR  255 (499)
T ss_pred             HHHHHHHHHhHhhcccchhhhcCchHHHHHhhHHHHHHhhccchHhHhHHHHhHHHHHhhhcccChHHHHHHHHHHHHHH
Confidence            9999999999999999755432   2222211121111 111110      01110     0111234455666777777


Q ss_pred             HHHHHhcCCCCCCHHHHHHhcccC---c--CC-CCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHH
Q 041681          266 IQKRRESGKQIGGLLGVLLAAKDH---K--LN-QLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQ  339 (479)
Q Consensus       266 i~~~~~~~~~~~~~l~~ll~~~~~---~--~~-~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei  339 (479)
                      ++.|.+++..+.|+++.+++.+.+   +  .. .+|.+++++++..|++||.||||+++++++|+||+||++|+|+|+||
T Consensus       256 v~~R~~~~~~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~AGfeTts~tlsf~lYeLA~~PdvQ~kLreEI  335 (499)
T KOG0158|consen  256 VEQREKENIERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLAGFETTASTLSFALYELAKNPDVQDKLREEI  335 (499)
T ss_pred             HHHHHhcCCCCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            787766667789999999988743   1  11 59999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcCCCCCcccCCCCchHHHHHHHHhccCCCCCcccccccccceec-CEEeCCCCEEeecccccccCCCCCCC
Q 041681          340 EGILRQKIEENRGLTWDDTRHMPLTTRVIQETLRTASILSFTFREAVQDVEFE-GYIIPRGWKVLPLFRSIHHCADFFPQ  418 (479)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~R~~~~d~~l~-g~~ip~G~~v~~~~~~~~~d~~~~~~  418 (479)
                      +++..+    ...+++|.+.+|+||++||+||||+||+++.+.|.+++|++++ ++.||||+.|.++.+++||||++|||
T Consensus       336 ~~~~~~----~~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~  411 (499)
T KOG0158|consen  336 DEVLEE----KEGLTYDSLSKLKYLDMVIKETLRLYPPAPFLNRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPE  411 (499)
T ss_pred             HHHhcc----cCCCCHHHHhCCcHHHHHHHHHHhhCCCcccccceecCceecCCCeEeCCCCEEEeecccccCCcccCCC
Confidence            998653    2239999999999999999999999999999889999999999 99999999999999999999999999


Q ss_pred             CCCCCCCCCCCCC----CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccC
Q 041681          419 PEKFDPSRFEAPP----RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFS  473 (479)
Q Consensus       419 p~~F~PeR~~~~~----~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~  473 (479)
                      |++|+||||.+..    .+..|+|||.|||.|+|++||.+|+|+.|++||++|+++..+
T Consensus       412 Pe~F~PERF~~~~~~~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~  470 (499)
T KOG0158|consen  412 PEKFKPERFEEENNKSRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCP  470 (499)
T ss_pred             cccCCCccCCCCcccccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCC
Confidence            9999999999643    567999999999999999999999999999999999999987


No 3  
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00  E-value=1.9e-75  Score=567.02  Aligned_cols=415  Identities=61%  Similarity=1.085  Sum_probs=358.9

Q ss_pred             HhhCCCCCCCCCCCcCCccccccccccccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCC
Q 041681           57 QWRQPKDKRFPPGSMGWPYIGETLKLYTQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYP  136 (479)
Q Consensus        57 ~~~~~~~~~~pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~  136 (479)
                      .....++.+.||||+++|++||++.+..++++.++.+++++||++|++++++++.|+++||+++++++.++...+++...
T Consensus        27 ~~~~~~~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~  106 (463)
T PLN02196         27 RRSSSTKLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFKPTFP  106 (463)
T ss_pred             ccCCCCCCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcccccCc
Confidence            33456677889999999999999887667899999999999999999999999999999999999999888766654433


Q ss_pred             cccccccCCCcccccCchHHHHHHHHHhhcCChHHHhhhHHHHHHHHHHHhhhhccCccchHHHHHHHHHHHHHHHHcCC
Q 041681          137 PSKEKMIGPEALFFHQGAYHSRLKKLVQASFLPSAIRGSVSEIEQIVLKFLPTWKNATINTLQEMKKYAFDVAMISAFGY  216 (479)
Q Consensus       137 ~~~~~~~g~~~l~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~vdl~~~~~~~~~~~i~~~~fG~  216 (479)
                      ......+|..+++..+|+.|+++|+++++.|++.+++.+.+.+.+.++++++.|.++.+|+.+++..+++++++.++||.
T Consensus       107 ~~~~~~~g~~~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~fG~  186 (463)
T PLN02196        107 ASKERMLGKQAIFFHQGDYHAKLRKLVLRAFMPDAIRNMVPDIESIAQESLNSWEGTQINTYQEMKTYTFNVALLSIFGK  186 (463)
T ss_pred             hHHHHHcCcccccccCcHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHcCCCCeEEeHHHHHHHHHHHHHHHHcCC
Confidence            33334566567888899999999999999999999999999999999999999987789999999999999999999998


Q ss_pred             CCchhHHhHHHHHHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhcccCcCCCCCH
Q 041681          217 QHDLEMEGIKNLYQCIEKGYNSMPLDLPGTPYHKAIKAREQLNETLRRLIQKRRESGKQIGGLLGVLLAAKDHKLNQLSD  296 (479)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~ll~~~~~~~~~l~~  296 (479)
                      +.....+.+...+..+...+..++..+|....++..++++++.+++.+.++++++...+..|+++.+++..    ..+++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~i~~~~~~~~~~~d~l~~ll~~~----~~l~~  262 (463)
T PLN02196        187 DEVLYREDLKRCYYILEKGYNSMPINLPGTLFHKSMKARKELAQILAKILSKRRQNGSSHNDLLGSFMGDK----EGLTD  262 (463)
T ss_pred             CCchHHHHHHHHHHHHhcchhcccccCCCccchHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHhcC----CCCCH
Confidence            75433344444444444344445555665545677788889999999999888776555678999988632    35899


Q ss_pred             HHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhhhcCCCCCcccCCCCchHHHHHHHHhccCC
Q 041681          297 SQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKIEENRGLTWDDTRHMPLTTRVIQETLRTAS  376 (479)
Q Consensus       297 ~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p  376 (479)
                      +++..++..+++||+|||+++++|++++|++||++|+|+++|++++.+.. +.++.+++++++++||++|||+|++|++|
T Consensus       263 ~ei~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~-~~~~~~~~~~~~~l~yl~avi~EtlRl~p  341 (463)
T PLN02196        263 EQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDK-EEGESLTWEDTKKMPLTSRVIQETLRVAS  341 (463)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhccc-ccCCCCCHHHHhcChHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999887532 12456899999999999999999999999


Q ss_pred             CCCcccccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCcchHHHHHHH
Q 041681          377 ILSFTFREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSRFEAPPRPNTYMPFGNGVHSCPGSELAKLEM  456 (479)
Q Consensus       377 ~~~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~~~~~~Fg~G~r~C~G~~la~~~~  456 (479)
                      +++...|.+.+|++++||.||||+.|+++.+++||||++|+||++|+||||++...+..++|||.|+|.|+|+++|+.|+
T Consensus       342 ~~~~~~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~~~~~~lpFG~G~r~C~G~~~A~~e~  421 (463)
T PLN02196        342 ILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAPKPNTFMPFGNGTHSCPGNELAKLEI  421 (463)
T ss_pred             CccccceeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCCCCCcccCcCCCCCCCchHHHHHHHH
Confidence            99988899999999999999999999999999999999999999999999998766789999999999999999999999


Q ss_pred             HHHHHHHHhhCceeccCCCC
Q 041681          457 HIFIHHLTTTYRSLSFSKFQ  476 (479)
Q Consensus       457 ~~~l~~ll~~f~~~~~~~~~  476 (479)
                      +++++.|+++|++++.++..
T Consensus       422 ~~~la~ll~~f~~~~~~~~~  441 (463)
T PLN02196        422 SVLIHHLTTKYRWSIVGTSN  441 (463)
T ss_pred             HHHHHHHHHhcEEEEcCCCC
Confidence            99999999999999987643


No 4  
>PLN02500 cytochrome P450 90B1
Probab=100.00  E-value=2.5e-75  Score=571.25  Aligned_cols=412  Identities=32%  Similarity=0.615  Sum_probs=339.3

Q ss_pred             CCCCCCCCCCCcCCccccccccccc----cCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccccCCC
Q 041681           60 QPKDKRFPPGSMGWPYIGETLKLYT----QNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTY  135 (479)
Q Consensus        60 ~~~~~~~pPgp~~~P~lG~~~~~~~----~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~  135 (479)
                      ..++.+.||||+++|++||++.+..    +.++.++.+++++||++|++++|+.+.|+++||+++++++.++...|..++
T Consensus        33 ~~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~  112 (490)
T PLN02500         33 KQKRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSY  112 (490)
T ss_pred             ccCCCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeC
Confidence            4455678999999999999875532    245677899999999999999999999999999999999998877665444


Q ss_pred             CcccccccCCCcccccCchHHHHHHHHHhhcCChHHHhh-hHHHHHHHHHHHhhhhc-cCccchHHHHHHHHHHHHHHHH
Q 041681          136 PPSKEKMIGPEALFFHQGAYHSRLKKLVQASFLPSAIRG-SVSEIEQIVLKFLPTWK-NATINTLQEMKKYAFDVAMISA  213 (479)
Q Consensus       136 ~~~~~~~~g~~~l~~~~g~~~~~~R~~~~~~f~~~~l~~-~~~~~~~~~~~~l~~l~-~~~vdl~~~~~~~~~~~i~~~~  213 (479)
                      .......+|+.+++..+|+.|+++|+++.+.|++.+++. +.+.+.+.+.++++.|. +..+|+.+.+..++++++++++
T Consensus       113 ~~~~~~~~g~~~~~~~~g~~wr~~Rk~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~vi~~~~  192 (490)
T PLN02500        113 PRSIGGILGKWSMLVLVGDMHRDMRSISLNFLSHARLRTHLLKEVERHTLLVLDSWKENSTFSAQDEAKKFTFNLMAKHI  192 (490)
T ss_pred             chHHHHHhCcccccccCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCCCCEEehHHHHHHHHHHHHHHH
Confidence            333334556446777899999999999999999999887 56788888888888876 4568999999999999999999


Q ss_pred             cCCCCch-hHHhHHHHHHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhc---C---CCCCCHHHHHHhc
Q 041681          214 FGYQHDL-EMEGIKNLYQCIEKGYNSMPLDLPGTPYHKAIKAREQLNETLRRLIQKRRES---G---KQIGGLLGVLLAA  286 (479)
Q Consensus       214 fG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~---~---~~~~~~l~~ll~~  286 (479)
                      ||.+.+. ....+...+..+.......+..+|...+++..++.+.+.+++.+.++++++.   .   ....|+++.+++.
T Consensus       193 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~  272 (490)
T PLN02500        193 MSMDPGEEETEQLKKEYVTFMKGVVSAPLNFPGTAYRKALKSRATILKFIERKMEERIEKLKEEDESVEEDDLLGWVLKH  272 (490)
T ss_pred             hCCCCCchHHHHHHHHHHHHHhhhhcchhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcchHHHHHHhc
Confidence            9986542 2233333333333322223334555445666677888888888888776542   1   1246899998874


Q ss_pred             ccCcCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhh-hcCCCCCcccCCCCchHH
Q 041681          287 KDHKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKI-EENRGLTWDDTRHMPLTT  365 (479)
Q Consensus       287 ~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~-~~~~~~~~~~~~~l~~l~  365 (479)
                           ..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++++++... .+++.++++|+++|||++
T Consensus       273 -----~~ls~~~i~~~~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~~~d~~~lpyl~  347 (490)
T PLN02500        273 -----SNLSTEQILDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIARAKKQSGESELNWEDYKKMEFTQ  347 (490)
T ss_pred             -----cCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccccCCCCCCCHHHhccCHHHH
Confidence                 25899999999999999999999999999999999999999999999998864211 123458999999999999


Q ss_pred             HHHHHHhccCCCCCcccccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCCCCCCCCCC-----------CCC
Q 041681          366 RVIQETLRTASILSFTFREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSRFEAPP-----------RPN  434 (479)
Q Consensus       366 a~i~E~lRl~p~~~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~-----------~~~  434 (479)
                      |||+|+||++|++|.+.|.+.+|++++||.|||||.|+++.+++||||++|+||++|+||||+++.           .+.
T Consensus       348 avikEtlRl~P~~~~~~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~  427 (490)
T PLN02500        348 CVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTN  427 (490)
T ss_pred             HHHHHHHhcCCCccCeeeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCC
Confidence            999999999999998889999999999999999999999999999999999999999999998642           245


Q ss_pred             CccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCCC
Q 041681          435 TYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKFQ  476 (479)
Q Consensus       435 ~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~  476 (479)
                      .|+|||.|+|.|+|+++|.+|+++++++|+++|+|++.++.+
T Consensus       428 ~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~  469 (490)
T PLN02500        428 NFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQ  469 (490)
T ss_pred             CCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCc
Confidence            799999999999999999999999999999999999877653


No 5  
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00  E-value=1.4e-74  Score=561.47  Aligned_cols=413  Identities=31%  Similarity=0.591  Sum_probs=348.7

Q ss_pred             CCCCCCCCCCcCCccccccccccccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCCcccc
Q 041681           61 PKDKRFPPGSMGWPYIGETLKLYTQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYPPSKE  140 (479)
Q Consensus        61 ~~~~~~pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~~~~~  140 (479)
                      +.+++.||||+++|++||++.+. +++..++.+++++||++|++++++.+.++++||+++++++.++...+.++......
T Consensus        27 ~~r~~~ppgp~~~P~~G~~~~~~-~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~  105 (463)
T PLN02774         27 YSKKGLPPGTMGWPLFGETTEFL-KQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSML  105 (463)
T ss_pred             cCCCCCCCCCCCCCchhhHHHHH-HhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHH
Confidence            34557789999999999998874 56778899999999999999999999999999999999998876655444333333


Q ss_pred             cccCCCcccccCchHHHHHHHHHhhcCChHHHhh-hHHHHHHHHHHHhhhhcc-CccchHHHHHHHHHHHHHHHHcCCCC
Q 041681          141 KMIGPEALFFHQGAYHSRLKKLVQASFLPSAIRG-SVSEIEQIVLKFLPTWKN-ATINTLQEMKKYAFDVAMISAFGYQH  218 (479)
Q Consensus       141 ~~~g~~~l~~~~g~~~~~~R~~~~~~f~~~~l~~-~~~~~~~~~~~~l~~l~~-~~vdl~~~~~~~~~~~i~~~~fG~~~  218 (479)
                      .++|..+++..+|+.|+++|+++.+.|++..++. +.+.+.+.+++++++|.. +++|+.+.+..++++++..++||.+.
T Consensus       106 ~~lg~~~~~~~~g~~w~~~R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~  185 (463)
T PLN02774        106 DILGTCNIAAVHGSTHRYMRGSLLSLISPTMIRDHLLPKIDEFMRSHLSGWDGLKTIDIQEKTKEMALLSALKQIAGTLS  185 (463)
T ss_pred             HHhCccchhhcCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEeeHHHHHHHHHHHHHHHcCCCC
Confidence            4566557777899999999999999999999886 789999999999998873 67999999999999999999999865


Q ss_pred             chhHHhHHHHHHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhcccCcCCCCCHHH
Q 041681          219 DLEMEGIKNLYQCIEKGYNSMPLDLPGTPYHKAIKAREQLNETLRRLIQKRRESGKQIGGLLGVLLAAKDHKLNQLSDSQ  298 (479)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~  298 (479)
                      ......+.+.+..+......++.++|....++..++++.+.+.+.+.++++++.+...+|+++.+++..+ ++..+++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~d~l~~ll~~~~-~~~~~s~~e  264 (463)
T PLN02774        186 KPISEEFKTEFFKLVLGTLSLPIDLPGTNYRSGVQARKNIVRMLRQLIQERRASGETHTDMLGYLMRKEG-NRYKLTDEE  264 (463)
T ss_pred             hHHHHHHHHHHHHHhcccccCCcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHhCcc-CCCCCCHHH
Confidence            4433444444444333333445556665556777888999999999998887765556799999987432 223589999


Q ss_pred             HHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhhhcCCCCCcccCCCCchHHHHHHHHhccCCCC
Q 041681          299 IADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKIEENRGLTWDDTRHMPLTTRVIQETLRTASIL  378 (479)
Q Consensus       299 i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~  378 (479)
                      +..++.++++||+|||+++++|++++|++||++|+|+++|++.+++... +++.+++++++++||++|||+|+||++|++
T Consensus       265 i~~~~~~ll~Ag~dTt~~~l~w~l~~L~~~P~~q~kl~~Ei~~~~~~~~-~~~~~~~~~l~~lpyl~a~ikE~lRl~P~v  343 (463)
T PLN02774        265 IIDQIITILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKR-PEDPIDWNDYKSMRFTRAVIFETSRLATIV  343 (463)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccC-CCCCCCHHHHhcCcHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999999999999999875321 235689999999999999999999999999


Q ss_pred             CcccccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCCCCCCCCCC--CCCCccccCCCCCCCcchHHHHHHH
Q 041681          379 SFTFREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSRFEAPP--RPNTYMPFGNGVHSCPGSELAKLEM  456 (479)
Q Consensus       379 ~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~--~~~~~~~Fg~G~r~C~G~~la~~~~  456 (479)
                      +.+.|.+.+|++++||.||||+.|+++.+++||||++|+||++|+||||++.+  ....|+|||.|+|.|||+++|.+|+
T Consensus       344 ~~~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~~~~~~lpFG~G~r~C~G~~~A~~e~  423 (463)
T PLN02774        344 NGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLESHNYFFLFGGGTRLCPGKELGIVEI  423 (463)
T ss_pred             CCcccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcCCCccccCcCCCCCcCCcHHHHHHHH
Confidence            97789999999999999999999999999999999999999999999999643  2346899999999999999999999


Q ss_pred             HHHHHHHHhhCceeccCCCC
Q 041681          457 HIFIHHLTTTYRSLSFSKFQ  476 (479)
Q Consensus       457 ~~~l~~ll~~f~~~~~~~~~  476 (479)
                      +++++.|+++|++++.++.+
T Consensus       424 ~~~la~Ll~~f~~~~~~~~~  443 (463)
T PLN02774        424 STFLHYFVTRYRWEEVGGDK  443 (463)
T ss_pred             HHHHHHHHHhceEEECCCCc
Confidence            99999999999999977643


No 6  
>PLN02971 tryptophan N-hydroxylase
Probab=100.00  E-value=1.6e-73  Score=562.83  Aligned_cols=412  Identities=16%  Similarity=0.264  Sum_probs=326.8

Q ss_pred             CCCCCCCCCcCCccccccccccccCc-chHHHHHHHHcC-CeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCCccc
Q 041681           62 KDKRFPPGSMGWPYIGETLKLYTQNP-NSFFSNRQKRYG-DIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYPPSK  139 (479)
Q Consensus        62 ~~~~~pPgp~~~P~lG~~~~~~~~~~-~~~~~~~~~~yG-~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~~~~  139 (479)
                      ++.+.||||+++|++||++++....+ +.++.++.++|| ++|++++|+.++|+|+||+.+++++.++...|.++.....
T Consensus        54 r~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~~  133 (543)
T PLN02971         54 KLHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTYA  133 (543)
T ss_pred             CCCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCcccc
Confidence            45578999999999999988753333 567899999999 7999999999999999999999999998877777654333


Q ss_pred             ccccCCC---cccccCchHHHHHHHHHhhc-CChHHHhhhHHHHHHHHHHHhhhhc-----cCccchHHHHHHHHHHHHH
Q 041681          140 EKMIGPE---ALFFHQGAYHSRLKKLVQAS-FLPSAIRGSVSEIEQIVLKFLPTWK-----NATINTLQEMKKYAFDVAM  210 (479)
Q Consensus       140 ~~~~g~~---~l~~~~g~~~~~~R~~~~~~-f~~~~l~~~~~~~~~~~~~~l~~l~-----~~~vdl~~~~~~~~~~~i~  210 (479)
                      ...+|.+   +++..+|+.|+++|+++.+. +++...+.+.+.++++++++++.+.     ++++|+.+.+.++++++++
T Consensus       134 ~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~  213 (543)
T PLN02971        134 QKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYCGNAIK  213 (543)
T ss_pred             hhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHH
Confidence            3444422   36778899999999999755 5555566677777777777766652     4579999999999999999


Q ss_pred             HHHcCCCCch------h--HHhHHHHHHHHHhhc----c-ccCCCCCCC------c-hHHHHHHHHHHHHHHHHHHHHHH
Q 041681          211 ISAFGYQHDL------E--MEGIKNLYQCIEKGY----N-SMPLDLPGT------P-YHKAIKAREQLNETLRRLIQKRR  270 (479)
Q Consensus       211 ~~~fG~~~~~------~--~~~~~~~~~~~~~~~----~-~~~~~~p~~------~-~~~~~~~~~~l~~~~~~~i~~~~  270 (479)
                      +++||.+...      +  .....+.+..+....    . .+...+|..      . .+...+..+.+.+++.+.+++++
T Consensus       214 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  293 (543)
T PLN02971        214 RLMFGTRTFSEKTEPDGGPTLEDIEHMDAMFEGLGFTFAFCISDYLPMLTGLDLNGHEKIMRESSAIMDKYHDPIIDERI  293 (543)
T ss_pred             HHHhCCcccccccccccchhHHHHHHHHHHHHHHHhccCCcHHHhCCchhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999986421      0  111112222221111    0 011112211      1 12334455667778888887765


Q ss_pred             hc---C--CCCCCHHHHHHhcccCcCC-CCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 041681          271 ES---G--KQIGGLLGVLLAAKDHKLN-QLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILR  344 (479)
Q Consensus       271 ~~---~--~~~~~~l~~ll~~~~~~~~-~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~  344 (479)
                      +.   .  ....|+++.+++..++++. .++++++.+++.++++||+|||+++++|++++|++|||+|+|+++||+.+++
T Consensus       294 ~~~~~~~~~~~~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~EI~~v~g  373 (543)
T PLN02971        294 KMWREGKRTQIEDFLDIFISIKDEAGQPLLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEIDRVVG  373 (543)
T ss_pred             HHHhccCCCCCcCHHHHHHhhhcccCCCCCCHHHHHHhHHHHheeccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence            42   1  1246999999986543333 4899999999999999999999999999999999999999999999999975


Q ss_pred             hhhhcCCCCCcccCCCCchHHHHHHHHhccCCCCCc-ccccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCC
Q 041681          345 QKIEENRGLTWDDTRHMPLTTRVIQETLRTASILSF-TFREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFD  423 (479)
Q Consensus       345 ~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~-~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~  423 (479)
                          .++.++++++++|||++|||+|+||++|++|. ..|.+.+|++++||.||||+.|+++.+++||||++|+||++|+
T Consensus       374 ----~~~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~  449 (543)
T PLN02971        374 ----KERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFK  449 (543)
T ss_pred             ----CCCCCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCccccC
Confidence                35678999999999999999999999999997 4699999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC-------CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCCCC
Q 041681          424 PSRFEAPP-------RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKFQN  477 (479)
Q Consensus       424 PeR~~~~~-------~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~  477 (479)
                      ||||+++.       .+..|+|||.|+|.|+|++||+.|+++++++|+++|+|++.++...
T Consensus       450 PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~  510 (543)
T PLN02971        450 PERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSETR  510 (543)
T ss_pred             cccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCCCC
Confidence            99999632       2457999999999999999999999999999999999998876543


No 7  
>PLN02183 ferulate 5-hydroxylase
Probab=100.00  E-value=1.9e-72  Score=553.51  Aligned_cols=416  Identities=23%  Similarity=0.366  Sum_probs=335.7

Q ss_pred             HHHHhhCCCCCCCCCCCcCCccccccccccccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccccC
Q 041681           54 VLLQWRQPKDKRFPPGSMGWPYIGETLKLYTQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKP  133 (479)
Q Consensus        54 ~~~~~~~~~~~~~pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~  133 (479)
                      ++.+++.+++.+.||||+++|++|+++.+ ...++.++.+|+++||++|++++++.+.|+|+||+++++++.++...|..
T Consensus        25 ~~~~~~~~~~~~~ppgp~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~  103 (516)
T PLN02183         25 LGLISRLRRRLPYPPGPKGLPIIGNMLMM-DQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSN  103 (516)
T ss_pred             HHHHhhccCCCCCCcCCCCCCeeccHHhc-CCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcC
Confidence            33344455566889999999999999876 34566789999999999999999999999999999999999987666655


Q ss_pred             CCCc-ccccccC--CCcccccCchHHHHHHHH-HhhcCChHHHhhhHHHHHHHHHHHhhhhc---cCccchHHHHHHHHH
Q 041681          134 TYPP-SKEKMIG--PEALFFHQGAYHSRLKKL-VQASFLPSAIRGSVSEIEQIVLKFLPTWK---NATINTLQEMKKYAF  206 (479)
Q Consensus       134 ~~~~-~~~~~~g--~~~l~~~~g~~~~~~R~~-~~~~f~~~~l~~~~~~~~~~~~~~l~~l~---~~~vdl~~~~~~~~~  206 (479)
                      +... ......+  ..+++..+|+.|+++|++ +.+.|+...++.+.+. .++++++++.+.   +.++|+.+++..+++
T Consensus       104 r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~-~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~  182 (516)
T PLN02183        104 RPANIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASV-RDEVDSMVRSVSSNIGKPVNIGELIFTLTR  182 (516)
T ss_pred             CCcccchhccccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHhcCCCcEeHHHHHHHHHH
Confidence            4322 1122222  356777899999999998 5788999999888875 457888888884   567999999999999


Q ss_pred             HHHHHHHcCCCCchhHHhHHHHHHHHHhhcc------ccCC--CC-CCCchHHHHHHHHHHHHHHHHHHHHHHhc---C-
Q 041681          207 DVAMISAFGYQHDLEMEGIKNLYQCIEKGYN------SMPL--DL-PGTPYHKAIKAREQLNETLRRLIQKRRES---G-  273 (479)
Q Consensus       207 ~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~-p~~~~~~~~~~~~~l~~~~~~~i~~~~~~---~-  273 (479)
                      |++++++||.+.+.....+.+.+..+...+.      .+|.  ++ +....++..+..+.+.+++.+.++++++.   . 
T Consensus       183 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  262 (516)
T PLN02183        183 NITYRAAFGSSSNEGQDEFIKILQEFSKLFGAFNVADFIPWLGWIDPQGLNKRLVKARKSLDGFIDDIIDDHIQKRKNQN  262 (516)
T ss_pred             HHHHhHhhcCcccchHHHHHHHHHHHHHHhCCccHHHhcchhHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            9999999998765444445554444333211      1121  11 11123455566777777777777665432   1 


Q ss_pred             ------CCCCCHHHHHHhcccCc-----------CCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHH
Q 041681          274 ------KQIGGLLGVLLAAKDHK-----------LNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVT  336 (479)
Q Consensus       274 ------~~~~~~l~~ll~~~~~~-----------~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~  336 (479)
                            ....|+++.+++...++           +..++++++..++.++++||+|||+.+++|++++|++||++|+|++
T Consensus       263 ~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~La~~Pevq~kl~  342 (516)
T PLN02183        263 ADNDSEEAETDMVDDLLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRVQ  342 (516)
T ss_pred             cccccccccccHHHHHHHhhhccccccccccccccCCCCHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHhCHHHHHHHH
Confidence                  12358999998754321           1258999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcCCCCCcccCCCCchHHHHHHHHhccCCCCCcccccccccceecCEEeCCCCEEeecccccccCCCCC
Q 041681          337 REQEGILRQKIEENRGLTWDDTRHMPLTTRVIQETLRTASILSFTFREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFF  416 (479)
Q Consensus       337 ~Ei~~~~~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~  416 (479)
                      +|++++++.    ++.++++++++|||++|||+|+||++|++|...|.+.+|++++||.|||||.|.++.+++||||++|
T Consensus       343 ~Ei~~v~~~----~~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~  418 (516)
T PLN02183        343 QELADVVGL----NRRVEESDLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSW  418 (516)
T ss_pred             HHHHHHcCC----CCCCCHHHhccChHHHHHHHHHhccCCCccceeeeccCceeECCEEECCCCEEEEehhhhcCCcccc
Confidence            999999752    4568999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCC------CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCC
Q 041681          417 PQPEKFDPSRFEAPP------RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKF  475 (479)
Q Consensus       417 ~~p~~F~PeR~~~~~------~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~  475 (479)
                      +||++|+||||+++.      ....|+|||.|+|.|+|+++|++|++++++.|+++|++++.++.
T Consensus       419 ~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~  483 (516)
T PLN02183        419 EDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGM  483 (516)
T ss_pred             CCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCC
Confidence            999999999999642      23479999999999999999999999999999999999987754


No 8  
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00  E-value=1.2e-72  Score=546.81  Aligned_cols=411  Identities=33%  Similarity=0.650  Sum_probs=349.0

Q ss_pred             CCCCCCCCCCcCCccccccccccc----cCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCC
Q 041681           61 PKDKRFPPGSMGWPYIGETLKLYT----QNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYP  136 (479)
Q Consensus        61 ~~~~~~pPgp~~~P~lG~~~~~~~----~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~  136 (479)
                      .++.+.||||.++|++||++.+..    .+++.++.++.++||+||++++++.+.|+++||+++++++.++...+..++.
T Consensus         3 ~~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~   82 (452)
T PLN03141          3 KKKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYP   82 (452)
T ss_pred             CCCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCc
Confidence            456678999999999999988742    4688899999999999999999999999999999999999988877766544


Q ss_pred             cccccccCCCcccccCchHHHHHHHHHhhcCChHHHhh-hHHHHHHHHHHHhhhhc-cCccchHHHHHHHHHHHHHHHHc
Q 041681          137 PSKEKMIGPEALFFHQGAYHSRLKKLVQASFLPSAIRG-SVSEIEQIVLKFLPTWK-NATINTLQEMKKYAFDVAMISAF  214 (479)
Q Consensus       137 ~~~~~~~g~~~l~~~~g~~~~~~R~~~~~~f~~~~l~~-~~~~~~~~~~~~l~~l~-~~~vdl~~~~~~~~~~~i~~~~f  214 (479)
                      .....++|..+++..+|+.|+++|+++.+.|+...+.. +.+.+.+.++++++.|. +..+|+.+.+..++++++++++|
T Consensus        83 ~~~~~l~g~~~~~~~~g~~wr~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~  162 (452)
T PLN03141         83 KSLTELMGKSSILLINGSLQRRVHGLIGAFLKSPHLKAQITRDMERYVSESLDSWRDDPPVLVQDETKKIAFEVLVKALI  162 (452)
T ss_pred             hhHHHHhCcccccccCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCCCCEEhHHHHHHHHHHHHHHHHc
Confidence            44555677556888899999999999999998887766 46677888888888775 56789999999999999999999


Q ss_pred             CCCCchhHHhHHHHHHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCCHHHHHHhc
Q 041681          215 GYQHDLEMEGIKNLYQCIEKGYNSMPLDLPGTPYHKAIKAREQLNETLRRLIQKRRESGK--------QIGGLLGVLLAA  286 (479)
Q Consensus       215 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~--------~~~~~l~~ll~~  286 (479)
                      |.+.+.....+.+.+..+......++..+|....++..++.+++.+++.+.++++++...        ...|+++.+++.
T Consensus       163 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~d~l~~ll~~  242 (452)
T PLN03141        163 SLEPGEEMEFLKKEFQEFIKGLMSLPIKLPGTRLYRSLQAKKRMVKLVKKIIEEKRRAMKNKEEDETGIPKDVVDVLLRD  242 (452)
T ss_pred             CCCchHHHHHHHHHHHHHhhhHHhCccCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCChhhHHHHHHhc
Confidence            986654445555555555444444555566655566667888999999999987765421        136899998876


Q ss_pred             ccCcCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhhhcCCCCCcccCCCCchHHH
Q 041681          287 KDHKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKIEENRGLTWDDTRHMPLTTR  366 (479)
Q Consensus       287 ~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~l~~l~a  366 (479)
                      .+   ..++++++..++..+++||+|||+.+++|++++|++||++|+|+++|++++++.....++.++++++.+||||+|
T Consensus       243 ~~---~~l~~~~i~~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~lpyl~a  319 (452)
T PLN03141        243 GS---DELTDDLISDNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKRLKADTGEPLYWTDYMSLPFTQN  319 (452)
T ss_pred             CC---CCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhccCCCCCCCCHHHHhccHHHHH
Confidence            42   358999999999999999999999999999999999999999999999988653222345689999999999999


Q ss_pred             HHHHHhccCCCCCcccccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCCCCCCCCC-CCCCCccccCCCCCC
Q 041681          367 VIQETLRTASILSFTFREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSRFEAP-PRPNTYMPFGNGVHS  445 (479)
Q Consensus       367 ~i~E~lRl~p~~~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~-~~~~~~~~Fg~G~r~  445 (479)
                      ||+|++|++|+++.+.|.+.+|++++||.||||+.|+++.+++||||++|+||++|+||||++. ..+..|+|||.|+|.
T Consensus       320 vi~E~lRl~p~~~~~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~pFG~G~R~  399 (452)
T PLN03141        320 VITETLRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDMNNSSFTPFGGGQRL  399 (452)
T ss_pred             HHHHHHhccCCcCCcceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCCCCCCCCCCCCCCCC
Confidence            9999999999998888999999999999999999999999999999999999999999999974 235689999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHhhCceeccCC
Q 041681          446 CPGSELAKLEMHIFIHHLTTTYRSLSFSK  474 (479)
Q Consensus       446 C~G~~la~~~~~~~l~~ll~~f~~~~~~~  474 (479)
                      |+|++||.+|++++++.|+++|++++.++
T Consensus       400 C~G~~lA~~el~~~la~ll~~f~~~~~~~  428 (452)
T PLN03141        400 CPGLDLARLEASIFLHHLVTRFRWVAEED  428 (452)
T ss_pred             CChHHHHHHHHHHHHHHHHhcCeeecCCC
Confidence            99999999999999999999999998765


No 9  
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00  E-value=6.7e-72  Score=549.59  Aligned_cols=415  Identities=35%  Similarity=0.673  Sum_probs=346.8

Q ss_pred             CCCCCCCCCCCcCCcccccccccc----ccCcchHHHHHHHHcCC--eEEEeecCccEEEEeChHHHHHHHHhCCccccC
Q 041681           60 QPKDKRFPPGSMGWPYIGETLKLY----TQNPNSFFSNRQKRYGD--IFKTHILGCPCVMISSPEAAKIVLVSKAHLFKP  133 (479)
Q Consensus        60 ~~~~~~~pPgp~~~P~lG~~~~~~----~~~~~~~~~~~~~~yG~--i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~  133 (479)
                      ...+.+.||||+++|++|+++++.    ..+++.++.+++++||+  +|++++++.+.|+++||+++++++.+++. |.+
T Consensus        37 ~~~~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~~~-f~~  115 (490)
T PLN02302         37 GEGQPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDDDA-FEP  115 (490)
T ss_pred             ccCCCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCCCc-ccc
Confidence            555667899999999999988764    24678889999999997  79999999999999999999999987743 444


Q ss_pred             CCCcccccccCCCcccccCchHHHHHHHHHhhcCC-hHHHhhhHHHHHHHHHHHhhhhc-cCccchHHHHHHHHHHHHHH
Q 041681          134 TYPPSKEKMIGPEALFFHQGAYHSRLKKLVQASFL-PSAIRGSVSEIEQIVLKFLPTWK-NATINTLQEMKKYAFDVAMI  211 (479)
Q Consensus       134 ~~~~~~~~~~g~~~l~~~~g~~~~~~R~~~~~~f~-~~~l~~~~~~~~~~~~~~l~~l~-~~~vdl~~~~~~~~~~~i~~  211 (479)
                      ..+......+|...+...+|+.|+++|+.+.+.|+ ++.++.+.+.+++.++++++.+. ++.+|+.+.+..++++++++
T Consensus       116 ~~~~~~~~~~g~~~~~~~~g~~w~~~R~~~~~~f~~~~~l~~~~~~i~~~v~~~~~~~~~~~~v~~~~~~~~~~~~vi~~  195 (490)
T PLN02302        116 GWPESTVELIGRKSFVGITGEEHKRLRRLTAAPVNGPEALSTYIPYIEENVKSCLEKWSKMGEIEFLTELRKLTFKIIMY  195 (490)
T ss_pred             CCchhHHHHhccccccccCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCEehHHHHHHHHHHHHHH
Confidence            43322223566555666789999999999999995 67899999999999999999986 45699999999999999999


Q ss_pred             HHcCCCCchhHHhHHHHHHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCCHHHHHHhc
Q 041681          212 SAFGYQHDLEMEGIKNLYQCIEKGYNSMPLDLPGTPYHKAIKAREQLNETLRRLIQKRRESG-----KQIGGLLGVLLAA  286 (479)
Q Consensus       212 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~-----~~~~~~l~~ll~~  286 (479)
                      ++||.+.+.....+...+..+...+..++..+|....++..++.+++.+++.+.++++++..     ....|+++.+++.
T Consensus       196 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~  275 (490)
T PLN02302        196 IFLSSESELVMEALEREYTTLNYGVRAMAINLPGFAYHRALKARKKLVALFQSIVDERRNSRKQNISPRKKDMLDLLLDA  275 (490)
T ss_pred             HHcCCCChHHHHHHHHHHHHHHHHhhhCCcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcCCHHHHHHhh
Confidence            99999766544444444433333333334445554455666777888889988888776542     2357899999987


Q ss_pred             ccCcCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhhhcCCCCCcccCCCCchHHH
Q 041681          287 KDHKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKIEENRGLTWDDTRHMPLTTR  366 (479)
Q Consensus       287 ~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~l~~l~a  366 (479)
                      .++++..++++++..++..+++||+|||+.+++|++++|++||++|+|+++|++.+++....+...++++++++||||+|
T Consensus       276 ~~~~~~~~~~~~i~~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~~l~~lpyl~a  355 (490)
T PLN02302        276 EDENGRKLDDEEIIDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLKDVRKMEYLSQ  355 (490)
T ss_pred             hccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHhcChHHHH
Confidence            65555568999999999999999999999999999999999999999999999998753211122378999999999999


Q ss_pred             HHHHHhccCCCCCcccccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCCCCCCCCCC-CCCCccccCCCCCC
Q 041681          367 VIQETLRTASILSFTFREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSRFEAPP-RPNTYMPFGNGVHS  445 (479)
Q Consensus       367 ~i~E~lRl~p~~~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~-~~~~~~~Fg~G~r~  445 (479)
                      ||+|++|++|+++...|.+.+|++++||.||||+.|.++.+++||||++|+||++|+||||++.. .+..++|||.|+|.
T Consensus       356 ~i~E~lRl~p~~~~~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~~~~~~~~pFG~G~r~  435 (490)
T PLN02302        356 VIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYTPKAGTFLPFGLGSRL  435 (490)
T ss_pred             HHHHHHHhCCCcccchhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCCCCCCCccCCCCCCcC
Confidence            99999999999998889999999999999999999999999999999999999999999999753 45689999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHhhCceeccCCC
Q 041681          446 CPGSELAKLEMHIFIHHLTTTYRSLSFSKF  475 (479)
Q Consensus       446 C~G~~la~~~~~~~l~~ll~~f~~~~~~~~  475 (479)
                      |+|+++|..|+++++++++++|++++.++.
T Consensus       436 C~G~~lA~~e~~~~la~ll~~f~~~~~~~~  465 (490)
T PLN02302        436 CPGNDLAKLEISIFLHHFLLGYRLERLNPG  465 (490)
T ss_pred             CCcHHHHHHHHHHHHHHHHhcCeeEEcCCC
Confidence            999999999999999999999999987654


No 10 
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00  E-value=1.1e-71  Score=548.15  Aligned_cols=433  Identities=21%  Similarity=0.312  Sum_probs=347.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhh-CCCCCCCCCCCcCCccccccccccccCcchHHHHHHHHcCCeEEEeecCccEEEEe
Q 041681           37 LPTFLLSFSSLLLLLLLVLLQWR-QPKDKRFPPGSMGWPYIGETLKLYTQNPNSFFSNRQKRYGDIFKTHILGCPCVMIS  115 (479)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~  115 (479)
                      ++.++.+++++++.+++++...+ ++++.+.||||.++|++||++++. .+++.++.+++++||++|++++|+.++++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pPgp~~~P~iG~~~~~~-~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~   83 (517)
T PLN02687          5 LPLLLGTVAVSVLVWCLLLRRGGSGKHKRPLPPGPRGWPVLGNLPQLG-PKPHHTMAALAKTYGPLFRLRFGFVDVVVAA   83 (517)
T ss_pred             chHHHHHHHHHHHHHHHHhccccCCCCCCCCCccCCCCCccccHHhcC-CchhHHHHHHHHHhCCeeEEecCCceEEEeC
Confidence            44444444444444444433322 345557899999999999998874 6788999999999999999999999999999


Q ss_pred             ChHHHHHHHHhCCccccCCCCccccccc---CCCcccccCchHHHHHHHHHh-hcCChHHHhhhHHHHHHHHHHHhhhhc
Q 041681          116 SPEAAKIVLVSKAHLFKPTYPPSKEKMI---GPEALFFHQGAYHSRLKKLVQ-ASFLPSAIRGSVSEIEQIVLKFLPTWK  191 (479)
Q Consensus       116 dp~~~~~i~~~~~~~~~~~~~~~~~~~~---g~~~l~~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~l~  191 (479)
                      ||+++++++.++...|.++........+   +.+.++..+|+.|+++|+++. +.|+.++++++.+.+++.++++++.|.
T Consensus        84 ~p~~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~  163 (517)
T PLN02687         84 SASVAAQFLRTHDANFSNRPPNSGAEHMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELA  163 (517)
T ss_pred             CHHHHHHHHHhcchhhhcCCCccchhhhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHH
Confidence            9999999999876667665432221122   234566678999999999998 789999999999999999999998885


Q ss_pred             ----cCccchHHHHHHHHHHHHHHHHcCCCCc-----hhHHhHHHHHHHHHhhcc------ccCC--CCCCC-chHHHHH
Q 041681          192 ----NATINTLQEMKKYAFDVAMISAFGYQHD-----LEMEGIKNLYQCIEKGYN------SMPL--DLPGT-PYHKAIK  253 (479)
Q Consensus       192 ----~~~vdl~~~~~~~~~~~i~~~~fG~~~~-----~~~~~~~~~~~~~~~~~~------~~~~--~~p~~-~~~~~~~  253 (479)
                          ++++|+.+++..+++|+++..+||.+..     .....+.+.+..+.....      .+|.  +++.. ..++..+
T Consensus       164 ~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~  243 (517)
T PLN02687        164 RQHGTAPVNLGQLVNVCTTNALGRAMVGRRVFAGDGDEKAREFKEMVVELMQLAGVFNVGDFVPALRWLDLQGVVGKMKR  243 (517)
T ss_pred             HhcCCCceeHHHHHHHHHHHHHHHHHhCccccccCCcchHHHHHHHHHHHHHHhccCcHHHHhhhHHHhCcccHHHHHHH
Confidence                4579999999999999999999998642     122334444433322111      1121  11111 1234556


Q ss_pred             HHHHHHHHHHHHHHHHHhcC----CCCCCHHHHHHhcccC-----cCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Q 041681          254 AREQLNETLRRLIQKRRESG----KQIGGLLGVLLAAKDH-----KLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKY  324 (479)
Q Consensus       254 ~~~~l~~~~~~~i~~~~~~~----~~~~~~l~~ll~~~~~-----~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~  324 (479)
                      ..+.+.+++.+.++++++..    ....|+++.+++..++     ++..++++++.+++..+++||+|||+++++|++++
T Consensus       244 ~~~~~~~~~~~~i~~r~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~eTta~~l~~~l~~  323 (517)
T PLN02687        244 LHRRFDAMMNGIIEEHKAAGQTGSEEHKDLLSTLLALKREQQADGEGGRITDTEIKALLLNLFTAGTDTTSSTVEWAIAE  323 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccCcccccHHHHHHHhhccccccccccCCCHHHHHHHHHHHhccccCchHHHHHHHHHH
Confidence            67778888888888877642    2346899999986543     23469999999999999999999999999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHHhhhhhcCCCCCcccCCCCchHHHHHHHHhccCCCCCc-ccccccccceecCEEeCCCCEEe
Q 041681          325 LHDNQDLLDAVTREQEGILRQKIEENRGLTWDDTRHMPLTTRVIQETLRTASILSF-TFREAVQDVEFEGYIIPRGWKVL  403 (479)
Q Consensus       325 L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~-~~R~~~~d~~l~g~~ip~G~~v~  403 (479)
                      |++||++|+|+++|++.+++.    ++.++++++++||||+|||+|+||++|+++. ..|.+.+|++++||.|||||.|.
T Consensus       324 L~~~P~~~~kl~~Ei~~~~~~----~~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~  399 (517)
T PLN02687        324 LIRHPDILKKAQEELDAVVGR----DRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLL  399 (517)
T ss_pred             HHhCHHHHHHHHHHHHHHcCC----CCCCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEE
Confidence            999999999999999988752    4568999999999999999999999999996 57999999999999999999999


Q ss_pred             ecccccccCCCCCCCCCCCCCCCCCCCC---------CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCC
Q 041681          404 PLFRSIHHCADFFPQPEKFDPSRFEAPP---------RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSK  474 (479)
Q Consensus       404 ~~~~~~~~d~~~~~~p~~F~PeR~~~~~---------~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~  474 (479)
                      ++.+++||||++|+||++|+||||++..         ....++|||.|+|.|+|++||++|+++++++|+++|++++.++
T Consensus       400 ~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~  479 (517)
T PLN02687        400 VNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADG  479 (517)
T ss_pred             EecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCC
Confidence            9999999999999999999999998631         2347899999999999999999999999999999999998765


No 11 
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00  E-value=2.2e-71  Score=545.53  Aligned_cols=418  Identities=21%  Similarity=0.326  Sum_probs=337.5

Q ss_pred             HHHHHhhCCCCCCCCCCCcCCccccccccccccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCcccc
Q 041681           53 LVLLQWRQPKDKRFPPGSMGWPYIGETLKLYTQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFK  132 (479)
Q Consensus        53 ~~~~~~~~~~~~~~pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~  132 (479)
                      +++.....+++.+.||||+++|++||+..+...++..++.+++++||++|++++|+.++|+++||+++++++.++...|.
T Consensus        16 ~~~~~~~~~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~   95 (499)
T PLN03234         16 FFFLRSTTKKSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFT   95 (499)
T ss_pred             HHHHHHhcCCCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCcccc
Confidence            33344444556778999999999999988754478889999999999999999999999999999999999998776665


Q ss_pred             CCCCcccc---cccCCCcccccCchHHHHHHHHH-hhcCChHHHhhhHHHHHHHHHHHhhhhc-----cCccchHHHHHH
Q 041681          133 PTYPPSKE---KMIGPEALFFHQGAYHSRLKKLV-QASFLPSAIRGSVSEIEQIVLKFLPTWK-----NATINTLQEMKK  203 (479)
Q Consensus       133 ~~~~~~~~---~~~g~~~l~~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~l~-----~~~vdl~~~~~~  203 (479)
                      .+......   ...|....+...++.|+++|+.+ .+.|+++++..+.+.+++.++++++.|.     ++++|+.+.+..
T Consensus        96 ~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~  175 (499)
T PLN03234         96 ARPLLKGQQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGTVDLSELLLS  175 (499)
T ss_pred             CCCCchhhhhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccCCCeEEHHHHHHH
Confidence            54321111   11222222345678999999975 6899999999999999999999999984     567999999999


Q ss_pred             HHHHHHHHHHcCCCCchhHHhHHHHHH---HHHhhccc------cCCC--CC--CCchHHHHHHHHHHHHHHHHHHHHHH
Q 041681          204 YAFDVAMISAFGYQHDLEMEGIKNLYQ---CIEKGYNS------MPLD--LP--GTPYHKAIKAREQLNETLRRLIQKRR  270 (479)
Q Consensus       204 ~~~~~i~~~~fG~~~~~~~~~~~~~~~---~~~~~~~~------~~~~--~p--~~~~~~~~~~~~~l~~~~~~~i~~~~  270 (479)
                      +++|++++++||.+.+....+.....+   ........      +|..  ++  ....++..++.+++.+++++.+++++
T Consensus       176 ~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~  255 (499)
T PLN03234        176 FTNCVVCRQAFGKRYNEYGTEMKRFIDILYETQALLGTLFFSDLFPYFGFLDNLTGLSARLKKAFKELDTYLQELLDETL  255 (499)
T ss_pred             HHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHcCCCcHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999976543222222222   22211110      1110  00  01124566778888888999888775


Q ss_pred             hc---CCCCCCHHHHHHhcccCc--CCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 041681          271 ES---GKQIGGLLGVLLAAKDHK--LNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQ  345 (479)
Q Consensus       271 ~~---~~~~~~~l~~ll~~~~~~--~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~  345 (479)
                      +.   ....+|+++.+++..+++  +..++++++.+++.++++||+|||+.+++|++++|++||++|+|+++|++++++ 
T Consensus       256 ~~~~~~~~~~d~l~~l~~~~~~~~~~~~~~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~~~~~-  334 (499)
T PLN03234        256 DPNRPKQETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIG-  334 (499)
T ss_pred             hhcccCCCcccHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC-
Confidence            53   223468999888754332  235899999999999999999999999999999999999999999999999875 


Q ss_pred             hhhcCCCCCcccCCCCchHHHHHHHHhccCCCCCcc-cccccccceecCEEeCCCCEEeecccccccCCCCC-CCCCCCC
Q 041681          346 KIEENRGLTWDDTRHMPLTTRVIQETLRTASILSFT-FREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFF-PQPEKFD  423 (479)
Q Consensus       346 ~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~-~~p~~F~  423 (479)
                         +++.++++++++|||++|||+|+||++|+++.. .|.+.+|++++||.|||||.|.++.+.+||||++| +||++|+
T Consensus       335 ---~~~~~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~  411 (499)
T PLN03234        335 ---DKGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFI  411 (499)
T ss_pred             ---CCCCCCHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcC
Confidence               345689999999999999999999999999976 59999999999999999999999999999999999 8999999


Q ss_pred             CCCCCCCC-------CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCC
Q 041681          424 PSRFEAPP-------RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSK  474 (479)
Q Consensus       424 PeR~~~~~-------~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~  474 (479)
                      ||||+++.       ....++|||.|+|.|+|+++|+.|++++++.|+++|++++.++
T Consensus       412 PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~  469 (499)
T PLN03234        412 PERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKG  469 (499)
T ss_pred             chhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCC
Confidence            99998642       2457899999999999999999999999999999999999875


No 12 
>PTZ00404 cytochrome P450; Provisional
Probab=100.00  E-value=2.5e-71  Score=542.80  Aligned_cols=410  Identities=19%  Similarity=0.315  Sum_probs=330.6

Q ss_pred             hCCCCCCCCCCCcCCccccccccccccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCCc-
Q 041681           59 RQPKDKRFPPGSMGWPYIGETLKLYTQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYPP-  137 (479)
Q Consensus        59 ~~~~~~~~pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~~-  137 (479)
                      ..+.+.+.+|||+++|++||++.+. .+++.++.+++++||++|++++|+.++|+++||+++++++.++...|..+... 
T Consensus        23 ~~~~~~~~~pgp~~~p~~G~~~~~~-~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~  101 (482)
T PTZ00404         23 YKKIHKNELKGPIPIPILGNLHQLG-NLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIP  101 (482)
T ss_pred             hhhccCCCCCCCCCCCeeccHhhhc-ccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcc
Confidence            3456677789999999999998874 57889999999999999999999999999999999999998875545443221 


Q ss_pred             -ccccccCCCcccccCchHHHHHHHHHhhcCChHHHhhhHHHHHHHHHHHhhhhc-----cCccchHHHHHHHHHHHHHH
Q 041681          138 -SKEKMIGPEALFFHQGAYHSRLKKLVQASFLPSAIRGSVSEIEQIVLKFLPTWK-----NATINTLQEMKKYAFDVAMI  211 (479)
Q Consensus       138 -~~~~~~g~~~l~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~l~~l~-----~~~vdl~~~~~~~~~~~i~~  211 (479)
                       .....+| .+++..+|+.|+++|+++++.|+...++.+.+.+.+.++++++.|.     +..+|+.+++..+++|+++.
T Consensus       102 ~~~~~~~~-~~l~~~~g~~w~~~Rk~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~  180 (482)
T PTZ00404        102 SIKHGTFY-HGIVTSSGEYWKRNREIVGKAMRKTNLKHIYDLLDDQVDVLIESMKKIESSGETFEPRYYLTKFTMSAMFK  180 (482)
T ss_pred             eeeeeccC-CceeccChHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHH
Confidence             1122234 6788889999999999999999999999999999999999999874     45699999999999999999


Q ss_pred             HHcCCCCchhH-------HhHHHHHHHHHhhccc------cCCCCCCC-c-hHHHHHHHHHHHHHHHHHHHHHHhc--CC
Q 041681          212 SAFGYQHDLEM-------EGIKNLYQCIEKGYNS------MPLDLPGT-P-YHKAIKAREQLNETLRRLIQKRRES--GK  274 (479)
Q Consensus       212 ~~fG~~~~~~~-------~~~~~~~~~~~~~~~~------~~~~~p~~-~-~~~~~~~~~~l~~~~~~~i~~~~~~--~~  274 (479)
                      ++||.+.+...       ..+......+......      ++...+.. . .....+..+.+.+++.+.++++++.  ..
T Consensus       181 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  260 (482)
T PTZ00404        181 YIFNEDISFDEDIHNGKLAELMGPMEQVFKDLGSGSLFDVIEITQPLYYQYLEHTDKNFKKIKKFIKEKYHEHLKTIDPE  260 (482)
T ss_pred             HHhccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            99998654211       2233333332221111      00000100 0 1112334556666777766665543  22


Q ss_pred             CCCCHHHHHHhcccCcCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 041681          275 QIGGLLGVLLAAKDHKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKIEENRGLT  354 (479)
Q Consensus       275 ~~~~~l~~ll~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~  354 (479)
                      ...|+++.+++..++. ...+.+++.+++..+++||+|||+++++|++++|++||++|+|+++|++++++.    +..++
T Consensus       261 ~~~dll~~ll~~~~~~-~~~~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~----~~~~~  335 (482)
T PTZ00404        261 VPRDLLDLLIKEYGTN-TDDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNG----RNKVL  335 (482)
T ss_pred             CcccHHHHHHHHhccC-CcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcC----CCCCC
Confidence            3578999999864321 122334588999999999999999999999999999999999999999998763    34679


Q ss_pred             cccCCCCchHHHHHHHHhccCCCCCc-cccccccccee-cCEEeCCCCEEeecccccccCCCCCCCCCCCCCCCCCCCCC
Q 041681          355 WDDTRHMPLTTRVIQETLRTASILSF-TFREAVQDVEF-EGYIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSRFEAPPR  432 (479)
Q Consensus       355 ~~~~~~l~~l~a~i~E~lRl~p~~~~-~~R~~~~d~~l-~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~  432 (479)
                      ++++++||||+|||+|+||++|+++. .+|.+.+|+++ +||.||||+.|.++.+++||||++|+||++|+||||++...
T Consensus       336 ~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~~  415 (482)
T PTZ00404        336 LSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPDS  415 (482)
T ss_pred             ccccccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCCC
Confidence            99999999999999999999999996 57999999999 99999999999999999999999999999999999998667


Q ss_pred             CCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCC
Q 041681          433 PNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKF  475 (479)
Q Consensus       433 ~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~  475 (479)
                      ...|+|||.|+|.|+|+++|++|+++++++++++|++++.++.
T Consensus       416 ~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~  458 (482)
T PTZ00404        416 NDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGK  458 (482)
T ss_pred             CCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCC
Confidence            7899999999999999999999999999999999999987553


No 13 
>PLN02966 cytochrome P450 83A1
Probab=100.00  E-value=7.4e-71  Score=540.85  Aligned_cols=426  Identities=22%  Similarity=0.370  Sum_probs=335.8

Q ss_pred             HHHHHHHHHHhhCCCCCCCCCCCcCCccccccccccccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhC
Q 041681           48 LLLLLLVLLQWRQPKDKRFPPGSMGWPYIGETLKLYTQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSK  127 (479)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~  127 (479)
                      +++.+.+.+.+..++..+.||||+++|++||++.+...+++.++.+|+++||++|++++++.++|+++||+.+++++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~   91 (502)
T PLN02966         12 AAVLLFFLYQKPKTKRYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQ   91 (502)
T ss_pred             HHHHHHHHHhccccCCCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhC
Confidence            33344444445555566789999999999999988656788999999999999999999999999999999999999887


Q ss_pred             CccccCCCCcccccc--cCCC-cccccCchHHHHHHHH-HhhcCChHHHhhhHHHHHHHHHHHhhhhc-----cCccchH
Q 041681          128 AHLFKPTYPPSKEKM--IGPE-ALFFHQGAYHSRLKKL-VQASFLPSAIRGSVSEIEQIVLKFLPTWK-----NATINTL  198 (479)
Q Consensus       128 ~~~~~~~~~~~~~~~--~g~~-~l~~~~g~~~~~~R~~-~~~~f~~~~l~~~~~~~~~~~~~~l~~l~-----~~~vdl~  198 (479)
                      ...+.++........  .|.. ..+..+|+.|+++|++ +.+.|+..+++.+.+.+.+.++++++.|.     ++.+|+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vdl~  171 (502)
T PLN02966         92 DVNFADRPPHRGHEFISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAADKSEVVDIS  171 (502)
T ss_pred             cccccCCCCCccceeeccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeHH
Confidence            765654432211112  2222 2244568999999998 78899999999999999999999999984     3469999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCchhHHhHHHHHHHHHh---hcc------ccCCC--CC-CCch-HHHHHHHHHHHHHHHHH
Q 041681          199 QEMKKYAFDVAMISAFGYQHDLEMEGIKNLYQCIEK---GYN------SMPLD--LP-GTPY-HKAIKAREQLNETLRRL  265 (479)
Q Consensus       199 ~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~---~~~------~~~~~--~p-~~~~-~~~~~~~~~l~~~~~~~  265 (479)
                      +++..+++|+++.++||.+.+...+......+.+..   ...      .+|..  ++ ...+ .......+...+.+.+.
T Consensus       172 ~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (502)
T PLN02966        172 ELMLTFTNSVVCRQAFGKKYNEDGEEMKRFIKILYGTQSVLGKIFFSDFFPYCGFLDDLSGLTAYMKECFERQDTYIQEV  251 (502)
T ss_pred             HHHHHHHHHHHHHHHhCCccCccchHHHHHHHHHHHHHHHhCcccHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999765333333333322211   111      11210  11 0111 11223445566666666


Q ss_pred             HHHHHhc---CCCCCCHHHHHHhcccCc--CCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 041681          266 IQKRRES---GKQIGGLLGVLLAAKDHK--LNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQE  340 (479)
Q Consensus       266 i~~~~~~---~~~~~~~l~~ll~~~~~~--~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~  340 (479)
                      ++++.+.   .....++++.+++..+++  +..++++++..++.++++||+|||+.+++|++++|++||++|+|+++|++
T Consensus       252 i~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~q~kl~~Ei~  331 (502)
T PLN02966        252 VNETLDPKRVKPETESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVR  331 (502)
T ss_pred             HHHHHhccccccccccHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            6554332   123468999998765433  23589999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhcCCCCCcccCCCCchHHHHHHHHhccCCCCCcc-cccccccceecCEEeCCCCEEeecccccccCCCCC-CC
Q 041681          341 GILRQKIEENRGLTWDDTRHMPLTTRVIQETLRTASILSFT-FREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFF-PQ  418 (479)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~-~~  418 (479)
                      ++++..  .++.++++++++||||+|||+|+||++|+++.. .|.+.+|++++||.|||||.|.++.+++||||++| +|
T Consensus       332 ~v~~~~--~~~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~d  409 (502)
T PLN02966        332 EYMKEK--GSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPN  409 (502)
T ss_pred             HHhccc--CCCcCCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCC
Confidence            997531  134579999999999999999999999999974 69999999999999999999999999999999999 99


Q ss_pred             CCCCCCCCCCCCC-----CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCC
Q 041681          419 PEKFDPSRFEAPP-----RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKF  475 (479)
Q Consensus       419 p~~F~PeR~~~~~-----~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~  475 (479)
                      |++|+||||++..     ....|+|||.|+|.|+|++||++|++++++.|+++|+|++.++.
T Consensus       410 P~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~  471 (502)
T PLN02966        410 PDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGM  471 (502)
T ss_pred             hhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCC
Confidence            9999999998642     34589999999999999999999999999999999999988764


No 14 
>PLN00168 Cytochrome P450; Provisional
Probab=100.00  E-value=1.9e-70  Score=539.62  Aligned_cols=412  Identities=21%  Similarity=0.321  Sum_probs=331.5

Q ss_pred             CCCCCCCCCCCcCCcccccccccc--ccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCCc
Q 041681           60 QPKDKRFPPGSMGWPYIGETLKLY--TQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYPP  137 (479)
Q Consensus        60 ~~~~~~~pPgp~~~P~lG~~~~~~--~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~~  137 (479)
                      .++..+.||||+++|++||++.+.  ..+++.++.+++++||++|++++|+.+.|+++||+++++++.++...|..+...
T Consensus        30 ~~~~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~  109 (519)
T PLN00168         30 GKKGRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAV  109 (519)
T ss_pred             CCCCCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcc
Confidence            344567899999999999987653  234677899999999999999999999999999999999999887767655432


Q ss_pred             ccccccCC-Ccccc--cCchHHHHHHH-HHhhcCChHHHhhhHHHHHHHHHHHhhhhc-----cCccchHHHHHHHHHHH
Q 041681          138 SKEKMIGP-EALFF--HQGAYHSRLKK-LVQASFLPSAIRGSVSEIEQIVLKFLPTWK-----NATINTLQEMKKYAFDV  208 (479)
Q Consensus       138 ~~~~~~g~-~~l~~--~~g~~~~~~R~-~~~~~f~~~~l~~~~~~~~~~~~~~l~~l~-----~~~vdl~~~~~~~~~~~  208 (479)
                      ....++|. .+++.  .+|+.|+++|+ ++.+.|+.++++++.+.+.+.++++++.|.     +..+|+.+.+..+++++
T Consensus       110 ~~~~~~~~~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~i  189 (519)
T PLN00168        110 ASSRLLGESDNTITRSSYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRREAEDAAAPRVVETFQYAMFCL  189 (519)
T ss_pred             cchhhhccCCCceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence            22334442 23333  68999999986 789999999999999999999999999885     23578999999999999


Q ss_pred             HHHHHcCCCCchhH-HhHHHHHHHHHh---h----ccccCCCC---CCCchHHHHHHHHHHHHHHHHHHHHHHhcC----
Q 041681          209 AMISAFGYQHDLEM-EGIKNLYQCIEK---G----YNSMPLDL---PGTPYHKAIKAREQLNETLRRLIQKRRESG----  273 (479)
Q Consensus       209 i~~~~fG~~~~~~~-~~~~~~~~~~~~---~----~~~~~~~~---p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~----  273 (479)
                      ++.++||.+.+... ..+......+..   .    ...+|.+.   ....+++..+..+++.+++.++++++++..    
T Consensus       190 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  269 (519)
T PLN00168        190 LVLMCFGERLDEPAVRAIAAAQRDWLLYVSKKMSVFAFFPAVTKHLFRGRLQKALALRRRQKELFVPLIDARREYKNHLG  269 (519)
T ss_pred             HHHHHcCCCcChhhHHHHHHHHHHHHHHhcCCCCHHHhCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            99999999765322 222222222111   1    11122111   111233445667788888888887765431    


Q ss_pred             --C--------CCCCHHHHHHhccc--CcCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 041681          274 --K--------QIGGLLGVLLAAKD--HKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEG  341 (479)
Q Consensus       274 --~--------~~~~~l~~ll~~~~--~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~  341 (479)
                        .        ...|+++.+++...  +++..++++++..++.++++||+|||+++++|++++|++||++|+|+++|++.
T Consensus       270 ~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q~kl~~Ei~~  349 (519)
T PLN00168        270 QGGEPPKKETTFEHSYVDTLLDIRLPEDGDRALTDDEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQSKLHDEIKA  349 (519)
T ss_pred             ccCccccccccccccHHHHHHhhhccccccCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence              0        13589999987643  22346999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcCCCCCcccCCCCchHHHHHHHHhccCCCCCcc-cccccccceecCEEeCCCCEEeecccccccCCCCCCCCC
Q 041681          342 ILRQKIEENRGLTWDDTRHMPLTTRVIQETLRTASILSFT-FREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPE  420 (479)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~  420 (479)
                      +++.   ..+.++++++++||||+|||+|++|++|+++.. .|.+.+|++++||.|||||.|.++.+++||||++|+||+
T Consensus       350 v~~~---~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~  426 (519)
T PLN00168        350 KTGD---DQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPM  426 (519)
T ss_pred             HhCC---CCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCccccCCcc
Confidence            8752   235689999999999999999999999999875 699999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC----------CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCC
Q 041681          421 KFDPSRFEAPP----------RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSK  474 (479)
Q Consensus       421 ~F~PeR~~~~~----------~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~  474 (479)
                      +|+||||++..          .+..|+|||.|+|.|+|++||++|+++++++|+++|+|++.++
T Consensus       427 ~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~  490 (519)
T PLN00168        427 EFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPG  490 (519)
T ss_pred             ccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCC
Confidence            99999998631          2347999999999999999999999999999999999998765


No 15 
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00  E-value=2.2e-71  Score=547.34  Aligned_cols=408  Identities=21%  Similarity=0.338  Sum_probs=329.4

Q ss_pred             CCCCCCCCCCCcCCccccccccccc------------------cCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHH
Q 041681           60 QPKDKRFPPGSMGWPYIGETLKLYT------------------QNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAK  121 (479)
Q Consensus        60 ~~~~~~~pPgp~~~P~lG~~~~~~~------------------~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~  121 (479)
                      .+...+.||||+++|++||++++..                  .+....+.+|+++|||+|++++|+.+.|+++||++++
T Consensus        37 ~~~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~  116 (516)
T PLN02290         37 KIMERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIK  116 (516)
T ss_pred             HHHHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHH
Confidence            3445667999999999999987632                  1222346889999999999999999999999999999


Q ss_pred             HHHHhCCccccCCCCc--ccccccCCCcccccCchHHHHHHHHHhhcCChHHHhhhHHHHHHHHHHHhhhhc-----c-C
Q 041681          122 IVLVSKAHLFKPTYPP--SKEKMIGPEALFFHQGAYHSRLKKLVQASFLPSAIRGSVSEIEQIVLKFLPTWK-----N-A  193 (479)
Q Consensus       122 ~i~~~~~~~~~~~~~~--~~~~~~g~~~l~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~l~~l~-----~-~  193 (479)
                      +++.++...+...+..  ......| .+++..+|+.|+++|+++.+.|+..+++.+.+.+.++++++++.+.     + .
T Consensus       117 ~il~~~~~~~~r~~~~~~~~~~~~g-~~l~~~~g~~Wk~~Rk~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~  195 (516)
T PLN02290        117 ELLTKYNTVTGKSWLQQQGTKHFIG-RGLLMANGADWYHQRHIAAPAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQT  195 (516)
T ss_pred             HHHhcCCCCCCCcchhhhHHHHHhc-CCccccCchHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            9998874422222111  1223455 6788889999999999999999999999999999999999999985     2 3


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCCCchhHHhHHHHHHHHHh----hc--cccCC--CCCCCchHHHHHHHHHHHHHHHHH
Q 041681          194 TINTLQEMKKYAFDVAMISAFGYQHDLEMEGIKNLYQCIEK----GY--NSMPL--DLPGTPYHKAIKAREQLNETLRRL  265 (479)
Q Consensus       194 ~vdl~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~----~~--~~~~~--~~p~~~~~~~~~~~~~l~~~~~~~  265 (479)
                      .+|+.+++..+++|++++++||.+.+... .+.+....+..    ..  ..+|.  ++|....++..+..+++.+++.+.
T Consensus       196 ~vd~~~~~~~~~~~vi~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~  274 (516)
T PLN02290        196 EVEIGEYMTRLTADIISRTEFDSSYEKGK-QIFHLLTVLQRLCAQATRHLCFPGSRFFPSKYNREIKSLKGEVERLLMEI  274 (516)
T ss_pred             eEEhHHHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHHhhhhhcCchhhhCCChhHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999998754322 12222211111    11  01121  133222234445667788888888


Q ss_pred             HHHHHhc---C---CCCCCHHHHHHhcccC---cCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHH
Q 041681          266 IQKRRES---G---KQIGGLLGVLLAAKDH---KLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVT  336 (479)
Q Consensus       266 i~~~~~~---~---~~~~~~l~~ll~~~~~---~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~  336 (479)
                      ++++++.   +   ....|+++.+++..++   ++..++++++.+++.++++||+|||+++++|++++|++||++|+|++
T Consensus       275 i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~tl~~~l~~L~~~P~vq~kl~  354 (516)
T PLN02290        275 IQSRRDCVEIGRSSSYGDDLLGMLLNEMEKKRSNGFNLNLQLIMDECKTFFFAGHETTALLLTWTLMLLASNPTWQDKVR  354 (516)
T ss_pred             HHHHHHHhhcccCCCCCCCHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            8777653   1   1246899999875432   22347899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcCCCCCcccCCCCchHHHHHHHHhccCCCCCcccccccccceecCEEeCCCCEEeecccccccCCCCC
Q 041681          337 REQEGILRQKIEENRGLTWDDTRHMPLTTRVIQETLRTASILSFTFREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFF  416 (479)
Q Consensus       337 ~Ei~~~~~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~  416 (479)
                      +|++++++.     ..++++++++||||+|||+||+|++|+++.+.|.+.+|++++||.|||||.|.++.+++||||++|
T Consensus       355 ~Ei~~v~~~-----~~~~~~~l~~lpYl~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~  429 (516)
T PLN02290        355 AEVAEVCGG-----ETPSVDHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELW  429 (516)
T ss_pred             HHHHHHhCC-----CCCCHHHHhcChHHHHHHHHHHHcCCCccccceeecCCeeECCEEECCCCEEEecHHHhcCChhhh
Confidence            999998752     368999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             -CCCCCCCCCCCCCCC--CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCC
Q 041681          417 -PQPEKFDPSRFEAPP--RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSK  474 (479)
Q Consensus       417 -~~p~~F~PeR~~~~~--~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~  474 (479)
                       +||++|+||||++..  ....++|||.|+|.|+|+++|++|++++++.|+++|++++.++
T Consensus       430 ~~dP~~F~PeRfl~~~~~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~  490 (516)
T PLN02290        430 GKDANEFNPDRFAGRPFAPGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDN  490 (516)
T ss_pred             CCChhhcCccccCCCCCCCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCC
Confidence             899999999999642  3457999999999999999999999999999999999998775


No 16 
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00  E-value=2.3e-70  Score=538.91  Aligned_cols=413  Identities=19%  Similarity=0.298  Sum_probs=322.1

Q ss_pred             CCCCCCCCCCCcCCccccccccccccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCC-cc
Q 041681           60 QPKDKRFPPGSMGWPYIGETLKLYTQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYP-PS  138 (479)
Q Consensus        60 ~~~~~~~pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~-~~  138 (479)
                      ..++.+.||||+++|++|+++.+.+...+..+.+++++||++|++++|+++.|+|+||+.+++++.++...+.++.. ..
T Consensus        25 ~~~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~  104 (503)
T PLN02394         25 RGKKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVV  104 (503)
T ss_pred             hcCcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcch
Confidence            44557889999999999999887433356789999999999999999999999999999999999877665654432 22


Q ss_pred             cccccC--CCcccccCchHHHHHHHHHh-hcCChHHHhhhHHHHHHHHHHHhhhhc------cCccchHHHHHHHHHHHH
Q 041681          139 KEKMIG--PEALFFHQGAYHSRLKKLVQ-ASFLPSAIRGSVSEIEQIVLKFLPTWK------NATINTLQEMKKYAFDVA  209 (479)
Q Consensus       139 ~~~~~g--~~~l~~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~l~------~~~vdl~~~~~~~~~~~i  209 (479)
                      ...+.|  .++++..+|+.|+++|+.+. +.|+++.++.+.+.++++++++++++.      ++.+|+.+++..+++|++
T Consensus       105 ~~~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~~dvi  184 (503)
T PLN02394        105 FDIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEAATEGVVIRRRLQLMMYNIM  184 (503)
T ss_pred             HhHhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHHHHHH
Confidence            233333  24567778999999999986 889999999999999999999988885      235899999999999999


Q ss_pred             HHHHcCCCCchhHHhHH----HHHHHHHhhcc--------ccCCCCCCC-chH-HHHHHHHHHHH-HHHHHHHHHHhc--
Q 041681          210 MISAFGYQHDLEMEGIK----NLYQCIEKGYN--------SMPLDLPGT-PYH-KAIKAREQLNE-TLRRLIQKRRES--  272 (479)
Q Consensus       210 ~~~~fG~~~~~~~~~~~----~~~~~~~~~~~--------~~~~~~p~~-~~~-~~~~~~~~l~~-~~~~~i~~~~~~--  272 (479)
                      ++++||.+++...+...    ...........        .++...+.. .+. ...+......+ +.+..++++++.  
T Consensus       185 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  264 (503)
T PLN02394        185 YRMMFDRRFESEDDPLFLKLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICQDVKERRLALFKDYFVDERKKLMS  264 (503)
T ss_pred             HHHHhCCCcccccchhHHHHHHHHHHHHHHhcccccchhhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999997653222111    11111111111        011111100 011 11111121122 223345544331  


Q ss_pred             -----CCCCCCHHHHHHhcccCcCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhh
Q 041681          273 -----GKQIGGLLGVLLAAKDHKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKI  347 (479)
Q Consensus       273 -----~~~~~~~l~~ll~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~  347 (479)
                           .+...|+++.+++..++  +.++++++...+.++++||+|||+++++|++++|++||++|+|+++|++++++.  
T Consensus       265 ~~~~~~~~~~d~l~~ll~~~~~--~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~--  340 (503)
T PLN02394        265 AKGMDKEGLKCAIDHILEAQKK--GEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGP--  340 (503)
T ss_pred             hccCCcchhhhHHHHHHhcccc--CCCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCC--
Confidence                 12336899999987543  358999999999999999999999999999999999999999999999999753  


Q ss_pred             hcCCCCCcccCCCCchHHHHHHHHhccCCCCCcc-cccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCCCCC
Q 041681          348 EENRGLTWDDTRHMPLTTRVIQETLRTASILSFT-FREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSR  426 (479)
Q Consensus       348 ~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR  426 (479)
                        ++.++++++++||||+|||+|+||++|++|.. .|.+.+|++++||.|||||.|.++.+++||||++|+||++|+|||
T Consensus       341 --~~~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeR  418 (503)
T PLN02394        341 --GNQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPER  418 (503)
T ss_pred             --CCCCCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccc
Confidence              45678999999999999999999999999976 488899999999999999999999999999999999999999999


Q ss_pred             CCCCC-------CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCCCCC
Q 041681          427 FEAPP-------RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKFQNL  478 (479)
Q Consensus       427 ~~~~~-------~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~  478 (479)
                      |++..       ....++|||.|+|.|+|+++|++|++++++.++++|++++.++.+++
T Consensus       419 wl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~  477 (503)
T PLN02394        419 FLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQSKI  477 (503)
T ss_pred             cCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCCcC
Confidence            98632       23579999999999999999999999999999999999988776433


No 17 
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00  E-value=5.9e-70  Score=532.64  Aligned_cols=417  Identities=20%  Similarity=0.306  Sum_probs=336.7

Q ss_pred             HHHHhhCCCCCCCCCCCcCCccccccccccccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccccC
Q 041681           54 VLLQWRQPKDKRFPPGSMGWPYIGETLKLYTQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKP  133 (479)
Q Consensus        54 ~~~~~~~~~~~~~pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~  133 (479)
                      ++......++.+.||||+++|++||++.+ ..+++.++.+++++||++|++++|+.++|+|+||+++++++.++...|..
T Consensus        20 ~~~~~~~~~~~~~pPgp~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~   98 (504)
T PLN00110         20 FIRSLLPKPSRKLPPGPRGWPLLGALPLL-GNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSN   98 (504)
T ss_pred             HHHHHhhcccCCCcccCCCCCeeechhhc-CCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcC
Confidence            33444566777889999999999998776 45678899999999999999999999999999999999999987766665


Q ss_pred             CCCcc--cccccC-CCcccccCchHHHHHHHHHhh-cCChHHHhhhHHHHHHHHHHHhhhhc-----cCccchHHHHHHH
Q 041681          134 TYPPS--KEKMIG-PEALFFHQGAYHSRLKKLVQA-SFLPSAIRGSVSEIEQIVLKFLPTWK-----NATINTLQEMKKY  204 (479)
Q Consensus       134 ~~~~~--~~~~~g-~~~l~~~~g~~~~~~R~~~~~-~f~~~~l~~~~~~~~~~~~~~l~~l~-----~~~vdl~~~~~~~  204 (479)
                      +....  .....| .++++..+|+.|+++|+.+.+ .|+.++++.+.+.+.+++.++++.+.     ++++|+.+++..+
T Consensus        99 r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~  178 (504)
T PLN00110         99 RPPNAGATHLAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEPVVVPEMLTFS  178 (504)
T ss_pred             CCCccchhhhccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCcEeHHHHHHHH
Confidence            54321  112233 356777889999999999985 69999999999988888877777763     5578999999999


Q ss_pred             HHHHHHHHHcCCCC-c---hhHHhHHHHHHHHHhhc------cccCC--CCCCCc-hHHHHHHHHHHHHHHHHHHHHHHh
Q 041681          205 AFDVAMISAFGYQH-D---LEMEGIKNLYQCIEKGY------NSMPL--DLPGTP-YHKAIKAREQLNETLRRLIQKRRE  271 (479)
Q Consensus       205 ~~~~i~~~~fG~~~-~---~~~~~~~~~~~~~~~~~------~~~~~--~~p~~~-~~~~~~~~~~l~~~~~~~i~~~~~  271 (479)
                      ++|+++.++||.+. .   .....+.+.+.......      ..+|.  +++... .++..+..+.+.+++.+.++++++
T Consensus       179 ~~~vi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  258 (504)
T PLN00110        179 MANMIGQVILSRRVFETKGSESNEFKDMVVELMTTAGYFNIGDFIPSIAWMDIQGIERGMKHLHKKFDKLLTRMIEEHTA  258 (504)
T ss_pred             HHHHHHHHHhCCcccccCchhHHHHHHHHHHHHHHhccccHHHHcchHhhhCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999864 1   12233444444332211      11121  111111 133445566777777788877665


Q ss_pred             cC---CCCCCHHHHHHhcccC-cCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhh
Q 041681          272 SG---KQIGGLLGVLLAAKDH-KLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKI  347 (479)
Q Consensus       272 ~~---~~~~~~l~~ll~~~~~-~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~  347 (479)
                      ..   ....|+++.+++..+. ++..++++++..++..+++||+|||+++++|++++|++||++|+|+++|++++++.  
T Consensus       259 ~~~~~~~~~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~--  336 (504)
T PLN00110        259 SAHERKGNPDFLDVVMANQENSTGEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGR--  336 (504)
T ss_pred             hccccccCCChhhHHhhcccccCCCCCCHHHHHHHHHhhhcccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--
Confidence            32   2346899999976532 34469999999999999999999999999999999999999999999999998752  


Q ss_pred             hcCCCCCcccCCCCchHHHHHHHHhccCCCCCc-ccccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCCCCC
Q 041681          348 EENRGLTWDDTRHMPLTTRVIQETLRTASILSF-TFREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSR  426 (479)
Q Consensus       348 ~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~-~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR  426 (479)
                        ++.++++++++|||++|||+||+|++|+++. ..|.+.+|++++||.|||||.|.++.+++||||++|+||++|+|||
T Consensus       337 --~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeR  414 (504)
T PLN00110        337 --NRRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPER  414 (504)
T ss_pred             --CCCCCHHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCccc
Confidence              4568999999999999999999999999997 5699999999999999999999999999999999999999999999


Q ss_pred             CCCCCC--------CCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCC
Q 041681          427 FEAPPR--------PNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKF  475 (479)
Q Consensus       427 ~~~~~~--------~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~  475 (479)
                      |+++..        ...++|||.|+|.|+|++||..|+++++++|+++|++++.++.
T Consensus       415 fl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~  471 (504)
T PLN00110        415 FLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGV  471 (504)
T ss_pred             ccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCC
Confidence            986311        2369999999999999999999999999999999999987653


No 18 
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00  E-value=6.9e-70  Score=526.03  Aligned_cols=420  Identities=32%  Similarity=0.640  Sum_probs=339.5

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCcCCccccccccccc----cCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHH
Q 041681           50 LLLLVLLQWRQPKDKRFPPGSMGWPYIGETLKLYT----QNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLV  125 (479)
Q Consensus        50 ~~~~~~~~~~~~~~~~~pPgp~~~P~lG~~~~~~~----~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~  125 (479)
                      .++.+++.+.+..+.+.||||.++|++||++++..    .++..++.+++++||++|++++++.+.++|+||+++++++.
T Consensus        15 ~~~~~~~~~~~~~~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~   94 (472)
T PLN02987         15 AIFFLLLRRTRYRRMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQ   94 (472)
T ss_pred             HHHHHHHHhhccCCCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHh
Confidence            34444444555666778999999999999988742    46888899999999999999999999999999999999999


Q ss_pred             hCCccccCCCCcccccccCCCcccccCchHHHHHHHHHhhcCChHHHhhhH-HHHHHHHHHHhhhhccCccchHHHHHHH
Q 041681          126 SKAHLFKPTYPPSKEKMIGPEALFFHQGAYHSRLKKLVQASFLPSAIRGSV-SEIEQIVLKFLPTWKNATINTLQEMKKY  204 (479)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~g~~~l~~~~g~~~~~~R~~~~~~f~~~~l~~~~-~~~~~~~~~~l~~l~~~~vdl~~~~~~~  204 (479)
                      ++...|..++......++|+.+++..+|+.|+++|+++.+.++...++.+. ..+.+.++..++.|. +++++.+.+..+
T Consensus        95 ~~~~~f~~~~~~~~~~~lg~~~l~~~~g~~wr~~R~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~  173 (472)
T PLN02987         95 NEGKLFECSYPGSISNLLGKHSLLLMKGNLHKKMHSLTMSFANSSIIKDHLLLDIDRLIRFNLDSWS-SRVLLMEEAKKI  173 (472)
T ss_pred             CCCceEEecCcHHHHHHhCcccccccCcHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhhc-cceehHHHHHHH
Confidence            987777555443444556756788889999999999987644444555533 234455555566664 468999999999


Q ss_pred             HHHHHHHHHcCCCCchhHHhHHHHHHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCHH
Q 041681          205 AFDVAMISAFGYQHDLEMEGIKNLYQCIEKGYNSMPLDLPGTPYHKAIKAREQLNETLRRLIQKRRESG----KQIGGLL  280 (479)
Q Consensus       205 ~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~----~~~~~~l  280 (479)
                      +++++++++||.+.+...+.+...+......+...+..+....+++..++++++.+++.+.++++++..    ...+|++
T Consensus       174 t~~vi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~~d~l  253 (472)
T PLN02987        174 TFELTVKQLMSFDPGEWTESLRKEYVLVIEGFFSVPLPLFSTTYRRAIQARTKVAEALTLVVMKRRKEEEEGAEKKKDML  253 (472)
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhhhcCCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccHH
Confidence            999999999998655433444343433333222222211223456777888999999999998877642    2346899


Q ss_pred             HHHHhcccCcCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhhhcCCCCCcccCCC
Q 041681          281 GVLLAAKDHKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKIEENRGLTWDDTRH  360 (479)
Q Consensus       281 ~~ll~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~  360 (479)
                      +.+++..    ..++++++..++..+++||+|||+.+++|++++|++||++|+|+++|++.+..... ++..++++++.+
T Consensus       254 ~~ll~~~----~~~~~~ei~~~~~~l~~Ag~~tta~~l~~~l~~L~~~P~~~~~l~~E~~~~~~~~~-~~~~~~~~~l~~  328 (472)
T PLN02987        254 AALLASD----DGFSDEEIVDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKS-DSYSLEWSDYKS  328 (472)
T ss_pred             HHHHhcC----CCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhChHHHHHHHHHHHHHHcccC-CCCCCCHHHHhc
Confidence            9999764    25899999999999999999999999999999999999999999999998864321 234578999999


Q ss_pred             CchHHHHHHHHhccCCCCCcccccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCCCCCCCCCC----CCCCc
Q 041681          361 MPLTTRVIQETLRTASILSFTFREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSRFEAPP----RPNTY  436 (479)
Q Consensus       361 l~~l~a~i~E~lRl~p~~~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~----~~~~~  436 (479)
                      |||++||++|++|++|+++...|.+.+|++++||.||||+.|+++.+.+|+||++|+||++|+||||++..    ....+
T Consensus       329 lpyl~a~i~EtLRl~p~~~~~~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~~~~~~~~  408 (472)
T PLN02987        329 MPFTQCVVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGTTVPSNVF  408 (472)
T ss_pred             ChHHHHHHHHHHHccCCcCCccccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCCCCCCcce
Confidence            99999999999999999998889999999999999999999999999999999999999999999999642    23579


Q ss_pred             cccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCC
Q 041681          437 MPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKF  475 (479)
Q Consensus       437 ~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~  475 (479)
                      +|||.|+|.|+|+++|..|++++++.|+++|++++.++.
T Consensus       409 l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~  447 (472)
T PLN02987        409 TPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQD  447 (472)
T ss_pred             ECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCC
Confidence            999999999999999999999999999999999997665


No 19 
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00  E-value=8.2e-70  Score=535.96  Aligned_cols=418  Identities=18%  Similarity=0.271  Sum_probs=336.5

Q ss_pred             HHHHHHhhCCCCCCCCCCCcCCccccccccccccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccc
Q 041681           52 LLVLLQWRQPKDKRFPPGSMGWPYIGETLKLYTQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLF  131 (479)
Q Consensus        52 ~~~~~~~~~~~~~~~pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~  131 (479)
                      ++.+..++.+++.+.||||+++|++||++++ ..+++.++.+++++||++|++++++.+.++++||+++++++.++...|
T Consensus        19 ~~~~~~~~~~~~~~~ppgp~~~pl~G~~~~~-~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f   97 (514)
T PLN03112         19 IWRWLNASMRKSLRLPPGPPRWPIVGNLLQL-GPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVF   97 (514)
T ss_pred             HHHHccccccCCCCCccCCCCCCeeeeHHhc-CCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCccc
Confidence            3333444556667889999999999999887 467888999999999999999999999999999999999998877666


Q ss_pred             cCCCCcc--cccccCC-CcccccCchHHHHHHHHHh-hcCChHHHhhhHHHHHHHHHHHhhhhc-----cCccchHHHHH
Q 041681          132 KPTYPPS--KEKMIGP-EALFFHQGAYHSRLKKLVQ-ASFLPSAIRGSVSEIEQIVLKFLPTWK-----NATINTLQEMK  202 (479)
Q Consensus       132 ~~~~~~~--~~~~~g~-~~l~~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~l~-----~~~vdl~~~~~  202 (479)
                      .++....  ....+|. .+++..+|+.|+++|+++. +.|+.++++.+.+.+.+.++++++.+.     ++++|+.+.+.
T Consensus        98 ~~~~~~~~~~~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~~~~  177 (514)
T PLN03112         98 ASRPRTLAAVHLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQTGKPVNLREVLG  177 (514)
T ss_pred             ccCCCcccceeeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhccCCeeeHHHHHH
Confidence            6543321  1223442 3455678999999999964 689999999999999999999887653     45799999999


Q ss_pred             HHHHHHHHHHHcCCCCch-------hHHhHHHHHHHHHhhcc------ccCC--CC-CCCchHHHHHHHHHHHHHHHHHH
Q 041681          203 KYAFDVAMISAFGYQHDL-------EMEGIKNLYQCIEKGYN------SMPL--DL-PGTPYHKAIKAREQLNETLRRLI  266 (479)
Q Consensus       203 ~~~~~~i~~~~fG~~~~~-------~~~~~~~~~~~~~~~~~------~~~~--~~-p~~~~~~~~~~~~~l~~~~~~~i  266 (479)
                      .+++++++.++||.+...       ....+......+.....      .+|.  ++ +....++..+..+.+.+++++.+
T Consensus       178 ~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  257 (514)
T PLN03112        178 AFSMNNVTRMLLGKQYFGAESAGPKEAMEFMHITHELFRLLGVIYLGDYLPAWRWLDPYGCEKKMREVEKRVDEFHDKII  257 (514)
T ss_pred             HHHHHHHHHHHcCCccccccccchHHHHHHHHHHHHHHHHcCCCcHHHhChHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999986421       12233333333322111      1121  11 11122445566777888888888


Q ss_pred             HHHHhcC------CCCCCHHHHHHhcccCcC-CCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHH
Q 041681          267 QKRRESG------KQIGGLLGVLLAAKDHKL-NQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQ  339 (479)
Q Consensus       267 ~~~~~~~------~~~~~~l~~ll~~~~~~~-~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei  339 (479)
                      +++++..      .+..|+++.++++.++++ ..++++++.+++..+++||+|||+++++|++++|++||++|+|+++|+
T Consensus       258 ~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~~l~~~l~~L~~~P~vq~kl~~Ei  337 (514)
T PLN03112        258 DEHRRARSGKLPGGKDMDFVDVLLSLPGENGKEHMDDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEEL  337 (514)
T ss_pred             HHHHHhhcccccCCccchHHHHHHHhhccccccCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            7665531      234689999998654333 258999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcCCCCCcccCCCCchHHHHHHHHhccCCCCCcc-cccccccceecCEEeCCCCEEeecccccccCCCCCCC
Q 041681          340 EGILRQKIEENRGLTWDDTRHMPLTTRVIQETLRTASILSFT-FREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQ  418 (479)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~  418 (479)
                      ++++++    ++.++++++++|||++|||+|++|++|+++.. .|.+.+|++++||.|||||.|.++.+++||||++|+|
T Consensus       338 ~~~~~~----~~~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~d  413 (514)
T PLN03112        338 DSVVGR----NRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDD  413 (514)
T ss_pred             HHhcCC----CCcCChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCC
Confidence            998753    45689999999999999999999999999974 6999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCC---------CCCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCC
Q 041681          419 PEKFDPSRFEAP---------PRPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSK  474 (479)
Q Consensus       419 p~~F~PeR~~~~---------~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~  474 (479)
                      |++|+||||...         +....++|||.|+|.|+|+++|++|++++++.|+++|++++..+
T Consensus       414 P~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~  478 (514)
T PLN03112        414 VEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDG  478 (514)
T ss_pred             hhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            999999997542         12347999999999999999999999999999999999998754


No 20 
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00  E-value=5.8e-71  Score=534.98  Aligned_cols=406  Identities=30%  Similarity=0.516  Sum_probs=328.0

Q ss_pred             CCCCCCCCcCCcccccccccccc--CcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccc--cCCCCcc
Q 041681           63 DKRFPPGSMGWPYIGETLKLYTQ--NPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLF--KPTYPPS  138 (479)
Q Consensus        63 ~~~~pPgp~~~P~lG~~~~~~~~--~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~--~~~~~~~  138 (479)
                      +...||||.+||++|++.++...  +...++.++..+||++|+.++||.+.++++||+.+++|+.++....  .+.+...
T Consensus        33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~  112 (497)
T KOG0157|consen   33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES  112 (497)
T ss_pred             HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence            56779999999999999988644  5667889999999999999999999999999999999996443322  3344457


Q ss_pred             cccccCCCcccccCchHHHHHHHHHhhcCChHHHhhhHHHHHHHHHHHhhhhc----cCccchHHHHHHHHHHHHHHHHc
Q 041681          139 KEKMIGPEALFFHQGAYHSRLKKLVQASFLPSAIRGSVSEIEQIVLKFLPTWK----NATINTLQEMKKYAFDVAMISAF  214 (479)
Q Consensus       139 ~~~~~g~~~l~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~l~~l~----~~~vdl~~~~~~~~~~~i~~~~f  214 (479)
                      ...++|. +++..+|+.|+++|+++.+.|+.+.++++...+.+....+...+.    +..+|+.+.+.++++|+++.++|
T Consensus       113 ~~~~lG~-gll~~~g~~W~~~Rk~~~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~tld~i~~~~~  191 (497)
T KOG0157|consen  113 LKPWLGD-GLLFSDGEKWHKHRKLLTPAFHFEILKSFVPVFIESSLILLLLLELAASGEEVDLQDLLKRLTLDIICKTAM  191 (497)
T ss_pred             HHHHhcC-ccccCCchHHHHHHhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEcHHHHHHHHHHHHHHHHhc
Confidence            7889995 888888999999999999999999999999988887777666654    23399999999999999999999


Q ss_pred             CCCC-chhHHhHHHHHHHHHh--hccccCCCCC-C------C-chHHHHHHHHHHHHHHHHHHHHHHhc----C----CC
Q 041681          215 GYQH-DLEMEGIKNLYQCIEK--GYNSMPLDLP-G------T-PYHKAIKAREQLNETLRRLIQKRRES----G----KQ  275 (479)
Q Consensus       215 G~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~p-~------~-~~~~~~~~~~~l~~~~~~~i~~~~~~----~----~~  275 (479)
                      |... +.+.++....+..+..  .....+...| +      . ..++..++.+.+.+.+++.|++|++.    .    ..
T Consensus       192 G~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~iI~~rr~~~~~~~~~~~~~  271 (497)
T KOG0157|consen  192 GPESLDAEGPELFEYVQAFDDLTELISKRINLPLGTKFLYGLKSERKLKKARKILHDFLEKIIRERREELEKEGSGEEKK  271 (497)
T ss_pred             CCccccccCCcccHHHHHHHHHHHHHHHHHcCchhhhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch
Confidence            9322 2222222222222221  1111111122 1      1 34556678889999999999888864    1    23


Q ss_pred             CCCHHHHHHhcccCcCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhhhcCCCCCc
Q 041681          276 IGGLLGVLLAAKDHKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKIEENRGLTW  355 (479)
Q Consensus       276 ~~~~l~~ll~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~  355 (479)
                      ..|+++.+....+   ..++++++.+++.+|++||+|||+.+++|+++.|+.||++|+|+++|+++++++..   ...+.
T Consensus       272 ~~d~L~~~~~~~~---~~l~~~~i~d~v~tf~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~---~~~~~  345 (497)
T KOG0157|consen  272 RLDFLDTLLLEED---KPLTDEDIRDEVDTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRD---DKWEV  345 (497)
T ss_pred             hhhHHHHHHHhcc---CCCCHHHHHHHHHHheeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCC---CCCCh
Confidence            4567775333222   57999999999999999999999999999999999999999999999999986421   11222


Q ss_pred             ccCCCCchHHHHHHHHhccCCCCCcccccccccceec-CEEeCCCCEEeecccccccCCCCCC-CCCCCCCCCCCCC---
Q 041681          356 DDTRHMPLTTRVIQETLRTASILSFTFREAVQDVEFE-GYIIPRGWKVLPLFRSIHHCADFFP-QPEKFDPSRFEAP---  430 (479)
Q Consensus       356 ~~~~~l~~l~a~i~E~lRl~p~~~~~~R~~~~d~~l~-g~~ip~G~~v~~~~~~~~~d~~~~~-~p~~F~PeR~~~~---  430 (479)
                      .+..+|+|+++||+||||||||+|...|.+.+|++++ ||.||||+.|+++.+++|||+++|+ ||++|+||||+++   
T Consensus       346 ~~~~~m~yl~~vi~EsLRLyppvp~~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~  425 (497)
T KOG0157|consen  346 EKLDQMKYLEMVIKESLRLYPPVPLVARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEK  425 (497)
T ss_pred             hhhhhhHHHHHHHHHHhccCCCCchhhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCc
Confidence            2223699999999999999999999999999999995 8999999999999999999999995 9999999999953   


Q ss_pred             --CCCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCC
Q 041681          431 --PRPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKF  475 (479)
Q Consensus       431 --~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~  475 (479)
                        .++..|+|||+|+|.|+|++||++|+|+++++++++|+|++..+.
T Consensus       426 ~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~  472 (497)
T KOG0157|consen  426 AKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGD  472 (497)
T ss_pred             CCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCC
Confidence              235789999999999999999999999999999999999988775


No 21 
>PLN03018 homomethionine N-hydroxylase
Probab=100.00  E-value=5.5e-68  Score=519.41  Aligned_cols=409  Identities=19%  Similarity=0.305  Sum_probs=317.1

Q ss_pred             CCCCCCCCcCCccccccccccccCcc-hHHHHHHHHc-CCeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCCcccc
Q 041681           63 DKRFPPGSMGWPYIGETLKLYTQNPN-SFFSNRQKRY-GDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYPPSKE  140 (479)
Q Consensus        63 ~~~~pPgp~~~P~lG~~~~~~~~~~~-~~~~~~~~~y-G~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~~~~~  140 (479)
                      +.+.||||+++|++||++++..+++. .+++++.++| |++|++++|+.++|+|+||+.+++++.++...|.+++.....
T Consensus        38 ~~~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~  117 (534)
T PLN03018         38 SRQLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIM  117 (534)
T ss_pred             CCCCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhh
Confidence            34579999999999999987544443 4566777776 799999999999999999999999999887777776543222


Q ss_pred             cccCCC--ccccc-CchHHHHHHHHHhhcCChHHHhh-hHHHHHHHHHHHhhhhc-----cCccchHHHHHHHHHHHHHH
Q 041681          141 KMIGPE--ALFFH-QGAYHSRLKKLVQASFLPSAIRG-SVSEIEQIVLKFLPTWK-----NATINTLQEMKKYAFDVAMI  211 (479)
Q Consensus       141 ~~~g~~--~l~~~-~g~~~~~~R~~~~~~f~~~~l~~-~~~~~~~~~~~~l~~l~-----~~~vdl~~~~~~~~~~~i~~  211 (479)
                      ..++..  +++.. +|+.|+++|+++++.|...+..+ +.+..+++++++++.+.     +.++|+.+.+..+++|++++
T Consensus       118 ~~l~~~~~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~  197 (534)
T PLN03018        118 ETIGDNYKSMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVTMR  197 (534)
T ss_pred             hhhccCCCceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHHHH
Confidence            233422  35544 59999999999999876655444 44444455666766654     34699999999999999999


Q ss_pred             HHcCCCCch------hHHh----HHHHHHHHHhhccccCC---------CCCC----CchHHHHHHHHHHHHHHHHHHHH
Q 041681          212 SAFGYQHDL------EMEG----IKNLYQCIEKGYNSMPL---------DLPG----TPYHKAIKAREQLNETLRRLIQK  268 (479)
Q Consensus       212 ~~fG~~~~~------~~~~----~~~~~~~~~~~~~~~~~---------~~p~----~~~~~~~~~~~~l~~~~~~~i~~  268 (479)
                      ++||.+...      ....    +......+...+..++.         ++..    ....+.....+.+.+++.+.+++
T Consensus       198 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  277 (534)
T PLN03018        198 MLFGRRHVTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGFSPVDYVERWLRGWNIDGQEERAKVNVNLVRSYNNPIIDE  277 (534)
T ss_pred             HHhCCccccccccccccccchhHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            999987421      0111    11112222111111111         1110    01122333445667777777777


Q ss_pred             HHhc----CC--CCCCHHHHHHhcccCcCC-CCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 041681          269 RRES----GK--QIGGLLGVLLAAKDHKLN-QLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEG  341 (479)
Q Consensus       269 ~~~~----~~--~~~~~l~~ll~~~~~~~~-~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~  341 (479)
                      +++.    ..  ...|+++.+++..++++. .++++++..++.++++||+|||+.+++|++++|++||++|+|+++|+++
T Consensus       278 ~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~  357 (534)
T PLN03018        278 RVELWREKGGKAAVEDWLDTFITLKDQNGKYLVTPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDE  357 (534)
T ss_pred             HHHHhhhccCCCCcccHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            6542    11  246899999986554333 4899999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcCCCCCcccCCCCchHHHHHHHHhccCCCCCcc-cccccccceecCEEeCCCCEEeecccccccCCCCCCCCC
Q 041681          342 ILRQKIEENRGLTWDDTRHMPLTTRVIQETLRTASILSFT-FREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPE  420 (479)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~  420 (479)
                      +++    .++.++.+++++|||++|||+|+||++|++|.. .|.+.+|++++||.||||+.|.++.+++||||++|+||+
T Consensus       358 v~~----~~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~  433 (534)
T PLN03018        358 VVG----KDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPL  433 (534)
T ss_pred             HhC----CCCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccCCCcc
Confidence            875    245689999999999999999999999999977 489999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC----------CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCC
Q 041681          421 KFDPSRFEAPP----------RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKF  475 (479)
Q Consensus       421 ~F~PeR~~~~~----------~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~  475 (479)
                      +|+||||++..          ....++|||.|+|.|+|+++|.+|+++++++|+++|++++.++.
T Consensus       434 ~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~  498 (534)
T PLN03018        434 VYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDF  498 (534)
T ss_pred             ccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCC
Confidence            99999998632          23579999999999999999999999999999999999987664


No 22 
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=2.1e-68  Score=473.59  Aligned_cols=409  Identities=25%  Similarity=0.451  Sum_probs=349.6

Q ss_pred             CCCCCCcCC-ccccccccccccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhC--CccccCCCCccccc
Q 041681           65 RFPPGSMGW-PYIGETLKLYTQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSK--AHLFKPTYPPSKEK  141 (479)
Q Consensus        65 ~~pPgp~~~-P~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~--~~~~~~~~~~~~~~  141 (479)
                      +.||...+| |++|+...+ +++|.+|+++.++||||||++.++|+.+.++.+|+....+++..  +.+++..+.....+
T Consensus        31 ~~PPli~gwiP~lG~a~~f-gk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~  109 (486)
T KOG0684|consen   31 KEPPLIKGWIPWLGSALAF-GKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTP  109 (486)
T ss_pred             CCCcccccCcchhhHHHHh-ccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhh
Confidence            688888887 999999998 79999999999999999999999999999999999999999887  33444444466778


Q ss_pred             ccCCCcccccCchHHHHHHHHHhhcCChHHHhhhHHHHHHHHHHHhhh-hc-cCcc-chHHHHHHHHHHHHHHHHcCCCC
Q 041681          142 MIGPEALFFHQGAYHSRLKKLVQASFLPSAIRGSVSEIEQIVLKFLPT-WK-NATI-NTLQEMKKYAFDVAMISAFGYQH  218 (479)
Q Consensus       142 ~~g~~~l~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~l~~-l~-~~~v-dl~~~~~~~~~~~i~~~~fG~~~  218 (479)
                      .+|++.....++.....+.+.+..++....++++.+.+.+++++.++. |. .... .+.+..+.+.+.+.-.+.+|+.-
T Consensus       110 vFg~~v~~d~~~~~~~e~~~~~k~~L~~~~lk~~~e~m~~el~~~f~~~~~~s~~~d~l~~~~~~ii~tAs~~ll~~e~r  189 (486)
T KOG0684|consen  110 VFGKGVVYDVPNHVMMEQKKFFKSALGGVALKSLVELMLEELHAYFETSLGESGETDGLYTFCRLIIFTASRLLLGGEVR  189 (486)
T ss_pred             hcCCCccccCCCchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhcccccccchhHhhhhhHHHhhhhHHHhhhhhhh
Confidence            898777777778888889999999999999999999999999999988 54 3334 45555666666666666666644


Q ss_pred             chhHHhHHHHHHHHHhhcc----ccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHhcccCcCCC
Q 041681          219 DLEMEGIKNLYQCIEKGYN----SMPLDLPGTPYHKAIKAREQLNETLRRLIQKRRESGK-QIGGLLGVLLAAKDHKLNQ  293 (479)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~~~l~~ll~~~~~~~~~  293 (479)
                      ...+......+..+..++.    .+|.++|.+..++..++++++.+.+...+.++++..+ ...|++..+++ ...++.+
T Consensus       190 ~~~d~~~a~l~~dLd~~F~~~d~~FP~~LP~~~~r~~~ra~~~i~k~f~~~i~~rr~s~s~~~~dmlq~l~~-~y~dg~~  268 (486)
T KOG0684|consen  190 DQLDADVAKLYHDLDQGFQPFDFLFPYNLPIPLLRRRDRARKKISKIFSKIILDRRASISKWDNDMLQSLME-KYKDGRP  268 (486)
T ss_pred             hhhcchHHHHHHHHhccccchHhhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH-HhhcCCc
Confidence            4434455555555555543    3566788888888889999999999999999988864 45689999988 5556678


Q ss_pred             CCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhhhcCCCCCcccCCCCchHHHHHHHHhc
Q 041681          294 LSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKIEENRGLTWDDTRHMPLTTRVIQETLR  373 (479)
Q Consensus       294 l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~l~~l~a~i~E~lR  373 (479)
                      .+++|+...++.+++||+.|++.+.+|++++|++|||+++.+++|+++++++   ....+++++++++|.|+.||+||||
T Consensus       269 ~te~e~a~~li~~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~---~~~~l~~d~L~~lplL~~~IkEtLR  345 (486)
T KOG0684|consen  269 TTEEEIAGLLIGLLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGE---KKEKLTYDQLKDLPLLDSCIKETLR  345 (486)
T ss_pred             CcHHHHHHHHHHHHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhc---cCCCCCHHHHhcchHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999965   3345999999999999999999999


Q ss_pred             cCCCCCcccccccccceecC----EEeCCCCEEeecccccccCCCCCCCCCCCCCCCCCCCCC---------CCCccccC
Q 041681          374 TASILSFTFREAVQDVEFEG----YIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSRFEAPPR---------PNTYMPFG  440 (479)
Q Consensus       374 l~p~~~~~~R~~~~d~~l~g----~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~---------~~~~~~Fg  440 (479)
                      |+||.+.+.|.+.+|.++.+    |.||+|.+|.++.+.+|+||++|+||+.|+|+||+++..         ...+||||
T Consensus       346 L~~p~~~~~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfG  425 (486)
T KOG0684|consen  346 LHPPAHSLMRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFG  425 (486)
T ss_pred             cCCchhhHHHhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccC
Confidence            99999988899999999966    999999999999999999999999999999999996421         23579999


Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHhhCceeccC-CCCCC
Q 041681          441 NGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFS-KFQNL  478 (479)
Q Consensus       441 ~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~-~~~~~  478 (479)
                      +|+|.|||+.||.+|+++++..+|+.||+++.+ +-|.+
T Consensus       426 aGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~~~P~~  464 (486)
T KOG0684|consen  426 AGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDGPFPEV  464 (486)
T ss_pred             CCcCCCCchHHHHHHHHHHHHHHHHHcceeecCCCCCCC
Confidence            999999999999999999999999999999998 54443


No 23 
>PF00067 p450:  Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature;  InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00  E-value=1.1e-69  Score=533.07  Aligned_cols=405  Identities=30%  Similarity=0.532  Sum_probs=339.8

Q ss_pred             CCCCcCCccccccccccc-cCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCC-cccc---c
Q 041681           67 PPGSMGWPYIGETLKLYT-QNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYP-PSKE---K  141 (479)
Q Consensus        67 pPgp~~~P~lG~~~~~~~-~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~-~~~~---~  141 (479)
                      ||||+++|++||.+.+.. ++++.++.+++++|||+|++++++.++++|+||+.+++++.++...++.... ....   .
T Consensus         1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~   80 (463)
T PF00067_consen    1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG   80 (463)
T ss_dssp             SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred             CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence            899999999999999863 6788889999999999999999999999999999999999999766655422 1222   1


Q ss_pred             ccCCCcccccCchHHHHHHHHHhhcCChH-HHhhhHHHHHHHHHHHhhhhc-----cCccchHHHHHHHHHHHHHHHHcC
Q 041681          142 MIGPEALFFHQGAYHSRLKKLVQASFLPS-AIRGSVSEIEQIVLKFLPTWK-----NATINTLQEMKKYAFDVAMISAFG  215 (479)
Q Consensus       142 ~~g~~~l~~~~g~~~~~~R~~~~~~f~~~-~l~~~~~~~~~~~~~~l~~l~-----~~~vdl~~~~~~~~~~~i~~~~fG  215 (479)
                      ..+..+++..+|+.|+.+|+.+.+.|+.. .+ ++.+.+++.++++++.+.     +..+|+.++++.+++|+++.++||
T Consensus        81 ~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~fG  159 (463)
T PF00067_consen   81 PFGGKGLFFSDGERWRRQRRLLAPAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVLFG  159 (463)
T ss_dssp             HHTTTSSTTSSHHHHHHHHHHHHHHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccceeeeeccccccccccccccccc
Confidence            23347888889999999999999999998 66 899999999999998886     235999999999999999999999


Q ss_pred             CCCc-hh---HHhHHHHHHHHHhhc--------cccC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcC----CCCC
Q 041681          216 YQHD-LE---MEGIKNLYQCIEKGY--------NSMP--LDLPGTPYHKAIKAREQLNETLRRLIQKRRESG----KQIG  277 (479)
Q Consensus       216 ~~~~-~~---~~~~~~~~~~~~~~~--------~~~~--~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~----~~~~  277 (479)
                      .+.+ ..   ...+.+.+..+...+        ..+|  .+++....+...++.+.+.+++.+.++++++..    ....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  239 (463)
T PF00067_consen  160 KDFGSLDDEDFEEFLEAFDELFELLSNFFWNLPFFFPWLKYLPTPLFRRFKRARDRLRKYIKEIIEERREELDDGDESRR  239 (463)
T ss_dssp             SHHHGTTHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHSSSSSCS
T ss_pred             ceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9754 11   223334443332211        1122  234444555666677888899999998887762    2468


Q ss_pred             CHHHHHHhcc-cCcC-CCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhhhcCCCCCc
Q 041681          278 GLLGVLLAAK-DHKL-NQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKIEENRGLTW  355 (479)
Q Consensus       278 ~~l~~ll~~~-~~~~-~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~  355 (479)
                      |+++.+++.. +.++ ..++++++..++..+++||+|||+.+++|++++|++||++|+|+++|++.+.+    ++..++.
T Consensus       240 d~l~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~----~~~~~~~  315 (463)
T PF00067_consen  240 DLLDSLLQASSDSDGPSGLSDEEIAAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLG----DGREITF  315 (463)
T ss_dssp             SHHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTT----TSSSHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccc
Confidence            9999999986 4443 37999999999999999999999999999999999999999999999999874    3457899


Q ss_pred             ccCCCCchHHHHHHHHhccCCCCC-cccccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCCCCCCCCCC---
Q 041681          356 DDTRHMPLTTRVIQETLRTASILS-FTFREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSRFEAPP---  431 (479)
Q Consensus       356 ~~~~~l~~l~a~i~E~lRl~p~~~-~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~---  431 (479)
                      +++++||||+|||+||+|++|+++ .+.|.+.+|++++||.|||||.|+++.+++|+||++|+||++|+||||++..   
T Consensus       316 ~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~  395 (463)
T PF00067_consen  316 EDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGIS  395 (463)
T ss_dssp             HHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTB
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999 6679999999999999999999999999999999999999999999999863   


Q ss_pred             --CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCCC
Q 041681          432 --RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKFQ  476 (479)
Q Consensus       432 --~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~  476 (479)
                        ....++|||.|+|.|||+++|+.|+++++++|+++|++++.++.+
T Consensus       396 ~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~  442 (463)
T PF00067_consen  396 NRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPGSE  442 (463)
T ss_dssp             CSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTTSS
T ss_pred             ccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCCCC
Confidence              467899999999999999999999999999999999999976544


No 24 
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00  E-value=2.2e-68  Score=525.64  Aligned_cols=405  Identities=18%  Similarity=0.258  Sum_probs=316.8

Q ss_pred             CCCCcCCccccccccccccCcchHHHHHHHHc---CCeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCC--ccccc
Q 041681           67 PPGSMGWPYIGETLKLYTQNPNSFFSNRQKRY---GDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYP--PSKEK  141 (479)
Q Consensus        67 pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~~y---G~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~--~~~~~  141 (479)
                      +|||+++|++||++.+.. + +..+.+|.++|   |++|++++++.+.++++||+.+++++.++...+.....  .....
T Consensus        32 ~pgp~~~p~~G~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~  109 (516)
T PLN03195         32 RKGPKSWPIIGAALEQLK-N-YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYMEV  109 (516)
T ss_pred             cCCCCCCCeecchHHHHh-c-cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHHH
Confidence            689999999999877653 3 34467777777   89999999999999999999999999876443433311  12223


Q ss_pred             ccCCCcccccCchHHHHHHHHHhhcCChHHHhhhHHHH-HHHHHHHhhhhc-----cCccchHHHHHHHHHHHHHHHHcC
Q 041681          142 MIGPEALFFHQGAYHSRLKKLVQASFLPSAIRGSVSEI-EQIVLKFLPTWK-----NATINTLQEMKKYAFDVAMISAFG  215 (479)
Q Consensus       142 ~~g~~~l~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~~-~~~~~~~l~~l~-----~~~vdl~~~~~~~~~~~i~~~~fG  215 (479)
                      +.| .+++..+|+.|+++|+++++.|+..+++.+.+.+ .+.+..+.+.+.     +.++|+.+++..+++|+++.++||
T Consensus       110 ~~g-~~l~~~~g~~w~~~Rr~l~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG  188 (516)
T PLN03195        110 LLG-DGIFNVDGELWRKQRKTASFEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICKVGFG  188 (516)
T ss_pred             Hhc-CeeeccCcHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHHHHhC
Confidence            455 5678889999999999999999999999988875 555555554442     457999999999999999999999


Q ss_pred             CCCchhH-----HhHHHHHHHHHhhc--ccc-CCC-----CCCCchHHHHHHHHHHHHHHHHHHHHHHhcC--------C
Q 041681          216 YQHDLEM-----EGIKNLYQCIEKGY--NSM-PLD-----LPGTPYHKAIKAREQLNETLRRLIQKRRESG--------K  274 (479)
Q Consensus       216 ~~~~~~~-----~~~~~~~~~~~~~~--~~~-~~~-----~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~--------~  274 (479)
                      .+.+...     ..+...+.......  ..+ |.+     ++....++..+..+.+.+++.+.++++++..        .
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  268 (516)
T PLN03195        189 VEIGTLSPSLPENPFAQAFDTANIIVTLRFIDPLWKLKKFLNIGSEALLSKSIKVVDDFTYSVIRRRKAEMDEARKSGKK  268 (516)
T ss_pred             CCccccccCCCccHHHHHHHHHHHHHHHHHhcchhhHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            8754211     22333332221110  001 111     1111122334566677777878777665431        1


Q ss_pred             CCCCHHHHHHhcccCcCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhh--------
Q 041681          275 QIGGLLGVLLAAKDHKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQK--------  346 (479)
Q Consensus       275 ~~~~~l~~ll~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~--------  346 (479)
                      ...|+++.+++..++++..++++++.+++.++++||+|||+.+++|++++|++||++|+|+++|+++++.+.        
T Consensus       269 ~~~d~l~~ll~~~~~~~~~l~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~  348 (516)
T PLN03195        269 VKHDILSRFIELGEDPDSNFTDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDPED  348 (516)
T ss_pred             ccccHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccccccccc
Confidence            246899999976544344699999999999999999999999999999999999999999999999886531        


Q ss_pred             --------hhcCCCCCcccCCCCchHHHHHHHHhccCCCCCccccccccccee-cCEEeCCCCEEeecccccccCCCCC-
Q 041681          347 --------IEENRGLTWDDTRHMPLTTRVIQETLRTASILSFTFREAVQDVEF-EGYIIPRGWKVLPLFRSIHHCADFF-  416 (479)
Q Consensus       347 --------~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~R~~~~d~~l-~g~~ip~G~~v~~~~~~~~~d~~~~-  416 (479)
                              .+.++.++++++++||||+|||+|+||++|++|...|.+.+|.++ +||.|||||.|.++.+++||||++| 
T Consensus       349 ~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g  428 (516)
T PLN03195        349 SQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWG  428 (516)
T ss_pred             cchhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcchhhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhc
Confidence                    011345899999999999999999999999999888888777666 9999999999999999999999999 


Q ss_pred             CCCCCCCCCCCCCCC-----CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCC
Q 041681          417 PQPEKFDPSRFEAPP-----RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSK  474 (479)
Q Consensus       417 ~~p~~F~PeR~~~~~-----~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~  474 (479)
                      +||++|+||||++..     .+..|+|||.|+|.|+|++||++|++++++.|+++|++++.++
T Consensus       429 ~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~  491 (516)
T PLN03195        429 PDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPG  491 (516)
T ss_pred             cChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCC
Confidence            999999999998632     3347999999999999999999999999999999999998754


No 25 
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00  E-value=1.5e-67  Score=514.65  Aligned_cols=396  Identities=18%  Similarity=0.240  Sum_probs=309.7

Q ss_pred             CCCCCcCCccccccccccccCcchHHHHHHH----HcCCeEE---EeecCccEEEEeChHHHHHHHHhCCccccCCCC-c
Q 041681           66 FPPGSMGWPYIGETLKLYTQNPNSFFSNRQK----RYGDIFK---THILGCPCVMISSPEAAKIVLVSKAHLFKPTYP-P  137 (479)
Q Consensus        66 ~pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~----~yG~i~~---~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~-~  137 (479)
                      ..|||++||++||+..+.+. ... +.++..    +||..++   .++|+.+.++|+||+.+++|+.++...|.++.. .
T Consensus        32 ~~p~p~~~pl~G~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~  109 (500)
T PLN02169         32 GQPILKNWPFLGMLPGMLHQ-IPR-IYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFK  109 (500)
T ss_pred             CCCCCCCCCcccchHHHHHc-cCc-HHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHH
Confidence            46788899999999877533 333 444444    4887665   577889999999999999999887665555432 2


Q ss_pred             ccccccCCCcccccCchHHHHHHHHHhhcCChHHHhhh--HHHHHHHHHHHhhhhc-----cCccchHHHHHHHHHHHHH
Q 041681          138 SKEKMIGPEALFFHQGAYHSRLKKLVQASFLPSAIRGS--VSEIEQIVLKFLPTWK-----NATINTLQEMKKYAFDVAM  210 (479)
Q Consensus       138 ~~~~~~g~~~l~~~~g~~~~~~R~~~~~~f~~~~l~~~--~~~~~~~~~~~l~~l~-----~~~vdl~~~~~~~~~~~i~  210 (479)
                      .....+| .+++..+|+.|+++|+++++.|+...+..+  .+.+.+.++++++.+.     +..+|+.+.+.++++|+++
T Consensus       110 ~~~~~~g-~gl~~~~g~~Wr~~Rk~l~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dvi~  188 (500)
T PLN02169        110 KIFDVLG-EGILTVDFELWEDLRKSNHALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDTSS  188 (500)
T ss_pred             HHHHhhc-CcccccCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHHHH
Confidence            2234456 788889999999999999999999877643  2455555565655553     4579999999999999999


Q ss_pred             HHHcCCCCchh-----HHhHHHHHHHHHhhc---cccC-------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcC--
Q 041681          211 ISAFGYQHDLE-----MEGIKNLYQCIEKGY---NSMP-------LDLPGTPYHKAIKAREQLNETLRRLIQKRRESG--  273 (479)
Q Consensus       211 ~~~fG~~~~~~-----~~~~~~~~~~~~~~~---~~~~-------~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~--  273 (479)
                      +++||.+.+..     ...+...+.......   ...|       .+++....++..++.+.+.+++.+.|+++++..  
T Consensus       189 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~~  268 (500)
T PLN02169        189 ILMTGYDPMSLSIEMLEVEFGEAADIGEEAIYYRHFKPVILWRLQNWIGIGLERKMRTALATVNRMFAKIISSRRKEEIS  268 (500)
T ss_pred             hheeCCCccccCCCCCCCHHHHHHHHHHHHHHhHHhccHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999864321     122333332221110   0111       122222345566778888889999888776531  


Q ss_pred             -----CCCCCHHHHHHhcccCc---CCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 041681          274 -----KQIGGLLGVLLAAKDHK---LNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQ  345 (479)
Q Consensus       274 -----~~~~~~l~~ll~~~~~~---~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~  345 (479)
                           +..+|+++.+++..+.+   +..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++.+   
T Consensus       269 ~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~i~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei~~v---  345 (500)
T PLN02169        269 RAETEPYSKDALTYYMNVDTSKYKLLKPKKDKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTK---  345 (500)
T ss_pred             cccccCCCcCHHHHHHhccccccccccCCChHHHHHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHHHhh---
Confidence                 12368999998764321   1247889999999999999999999999999999999999999999999876   


Q ss_pred             hhhcCCCCCcccCCCCchHHHHHHHHhccCCCCCccccccccccee-cCEEeCCCCEEeecccccccCCCCC-CCCCCCC
Q 041681          346 KIEENRGLTWDDTRHMPLTTRVIQETLRTASILSFTFREAVQDVEF-EGYIIPRGWKVLPLFRSIHHCADFF-PQPEKFD  423 (479)
Q Consensus       346 ~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~R~~~~d~~l-~g~~ip~G~~v~~~~~~~~~d~~~~-~~p~~F~  423 (479)
                             ++++++++||||+||++||||++|++|...|.+.+|.++ +||.||||+.|+++.+++||||++| +||++|+
T Consensus       346 -------~~~~dl~~L~Yl~avi~EtLRl~P~vp~~~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~  418 (500)
T PLN02169        346 -------FDNEDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFK  418 (500)
T ss_pred             -------CCHHHHhcCHHHHHHHHHHHhcCCCCCcCceecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcC
Confidence                   357899999999999999999999999888888777665 9999999999999999999999999 8999999


Q ss_pred             CCCCCCCC------CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCC
Q 041681          424 PSRFEAPP------RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSK  474 (479)
Q Consensus       424 PeR~~~~~------~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~  474 (479)
                      ||||+++.      ++..|+|||.|+|.|+|++||++|+++++++|+++|++++.++
T Consensus       419 PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~  475 (500)
T PLN02169        419 PERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEG  475 (500)
T ss_pred             ccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCC
Confidence            99998641      2568999999999999999999999999999999999998754


No 26 
>PLN02655 ent-kaurene oxidase
Probab=100.00  E-value=6.1e-67  Score=508.35  Aligned_cols=400  Identities=22%  Similarity=0.297  Sum_probs=316.7

Q ss_pred             CCCCcCCccccccccccccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCC-cccccccCC
Q 041681           67 PPGSMGWPYIGETLKLYTQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYP-PSKEKMIGP  145 (479)
Q Consensus        67 pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~-~~~~~~~g~  145 (479)
                      ||||+++|++||++++...+++.++.+|+++||++|++++++.+.++|+||+++++++.++...|.++.. .....+.|.
T Consensus         1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~   80 (466)
T PLN02655          1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRD   80 (466)
T ss_pred             CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcC
Confidence            7899999999999998656688999999999999999999999999999999999999988777766532 222334442


Q ss_pred             C-ccccc-CchHHHHHHHHHhh-cCChHHHhhhHHHHHHHHHHHhhhhc-------cCccchHHHHHHHHHHHHHHHHcC
Q 041681          146 E-ALFFH-QGAYHSRLKKLVQA-SFLPSAIRGSVSEIEQIVLKFLPTWK-------NATINTLQEMKKYAFDVAMISAFG  215 (479)
Q Consensus       146 ~-~l~~~-~g~~~~~~R~~~~~-~f~~~~l~~~~~~~~~~~~~~l~~l~-------~~~vdl~~~~~~~~~~~i~~~~fG  215 (479)
                      . .++.. +|+.|+++|+.+.+ .|+...++.+.+.+++.++++++.+.       ++.+|+.+.+..+++|+++.++||
T Consensus        81 ~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG  160 (466)
T PLN02655         81 KSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALG  160 (466)
T ss_pred             CCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhc
Confidence            3 34443 58999999986655 56666777777776666655555542       457899999999999999999999


Q ss_pred             CCCchhH-----------HhHHHHHHHHHhhcc------ccCC--CCCCCchHH-HHHHHHHHHHHHHHHHHHHHhc---
Q 041681          216 YQHDLEM-----------EGIKNLYQCIEKGYN------SMPL--DLPGTPYHK-AIKAREQLNETLRRLIQKRRES---  272 (479)
Q Consensus       216 ~~~~~~~-----------~~~~~~~~~~~~~~~------~~~~--~~p~~~~~~-~~~~~~~l~~~~~~~i~~~~~~---  272 (479)
                      .+.+...           ..+...+..+.....      .+|.  +++...+.+ ..+....+.+++.++++++++.   
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  240 (466)
T PLN02655        161 EDVESVYVEELGTEISKEEIFDVLVHDMMMCAIEVDWRDFFPYLSWIPNKSFETRVQTTEFRRTAVMKALIKQQKKRIAR  240 (466)
T ss_pred             cccccccccccccchhhHHHHHHHHHHHHHHhCCcchhhhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            8644211           112222222222111      1221  223221222 2222334456777777766543   


Q ss_pred             CCCCCCHHHHHHhcccCcCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhhhcCCC
Q 041681          273 GKQIGGLLGVLLAAKDHKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKIEENRG  352 (479)
Q Consensus       273 ~~~~~~~l~~ll~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~  352 (479)
                      .....|+++.+++..    ..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++.+++.     ..
T Consensus       241 ~~~~~d~l~~ll~~~----~~ls~~~i~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~~-----~~  311 (466)
T PLN02655        241 GEERDCYLDFLLSEA----THLTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCGD-----ER  311 (466)
T ss_pred             CCCcccHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCC-----CC
Confidence            233468999999764    258999999999999999999999999999999999999999999999998752     23


Q ss_pred             CCcccCCCCchHHHHHHHHhccCCCCCcc-cccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCCCCCCCCCC
Q 041681          353 LTWDDTRHMPLTTRVIQETLRTASILSFT-FREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSRFEAPP  431 (479)
Q Consensus       353 ~~~~~~~~l~~l~a~i~E~lRl~p~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~  431 (479)
                      +++++++++||++||++|+||++|+++.. +|.+.+|++++||.|||||.|+++.+++||||++|+||++|+||||++..
T Consensus       312 ~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~  391 (466)
T PLN02655        312 VTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEK  391 (466)
T ss_pred             CCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCC
Confidence            89999999999999999999999999976 59999999999999999999999999999999999999999999999742


Q ss_pred             ----CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCC
Q 041681          432 ----RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKF  475 (479)
Q Consensus       432 ----~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~  475 (479)
                          ....++|||.|+|.|||++||..+++++++.||++|++++.++.
T Consensus       392 ~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~  439 (466)
T PLN02655        392 YESADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGD  439 (466)
T ss_pred             cccCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCC
Confidence                23579999999999999999999999999999999999987654


No 27 
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.1e-66  Score=474.60  Aligned_cols=407  Identities=22%  Similarity=0.380  Sum_probs=334.7

Q ss_pred             CCCCCCCCCcCCcccccccccc---ccCcchHHHHHHHHcCCeEEEe-ecCccEEEEeChHHHHHHHHhCCccc-cC-CC
Q 041681           62 KDKRFPPGSMGWPYIGETLKLY---TQNPNSFFSNRQKRYGDIFKTH-ILGCPCVMISSPEAAKIVLVSKAHLF-KP-TY  135 (479)
Q Consensus        62 ~~~~~pPgp~~~P~lG~~~~~~---~~~~~~~~~~~~~~yG~i~~~~-~~~~~~vvv~dp~~~~~i~~~~~~~~-~~-~~  135 (479)
                      ++....|||+++|++|.++.+.   ..+-|+...+.+++|||||+.. +|+...|.|.||++++.+++.++... .+ ..
T Consensus        47 r~~~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG~~P~Rp~~~  126 (519)
T KOG0159|consen   47 RPFEEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEGKYPFRPLLI  126 (519)
T ss_pred             CChhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCCCCCCccccc
Confidence            4445579999999999988432   2456777888999999999999 78899999999999999999987432 21 11


Q ss_pred             C--cccccccC-CCcccccCchHHHHHHHHHhhc-CChHHHhhhHHHHHHHHHHHhhhhc--------cCccchHHHHHH
Q 041681          136 P--PSKEKMIG-PEALFFHQGAYHSRLKKLVQAS-FLPSAIRGSVSEIEQIVLKFLPTWK--------NATINTLQEMKK  203 (479)
Q Consensus       136 ~--~~~~~~~g-~~~l~~~~g~~~~~~R~~~~~~-f~~~~l~~~~~~~~~~~~~~l~~l~--------~~~vdl~~~~~~  203 (479)
                      .  ......++ ..|++..+|++|.+.|..+++. +.++.++.+.+.+++.+++++..+.        ..+.|+.+.+.+
T Consensus       127 ~~w~~~rd~~~~~~Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~  206 (519)
T KOG0159|consen  127 EPWVAYRDFRGGVCGLFLLEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELYR  206 (519)
T ss_pred             chhhhhHHhhccCCCcccCCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            1  11123333 5789999999999999999987 6678899999999999999998875        236799999999


Q ss_pred             HHHHHHHHHHcCCCCc-------hhHHhHHHHHHHHHhh---ccccC-C--CCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 041681          204 YAFDVAMISAFGYQHD-------LEMEGIKNLYQCIEKG---YNSMP-L--DLPGTPYHKAIKAREQLNETLRRLIQKRR  270 (479)
Q Consensus       204 ~~~~~i~~~~fG~~~~-------~~~~~~~~~~~~~~~~---~~~~~-~--~~p~~~~~~~~~~~~~l~~~~~~~i~~~~  270 (479)
                      ++++.++.+.||.+.+       .+.+.+......+...   +...| +  +++.+.|++..++.+.+.++..+.|++..
T Consensus       207 wslEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~~F~~s~~l~~~p~l~r~~~t~~wk~~~~~~D~i~~~~~~~Id~~l  286 (519)
T KOG0159|consen  207 WSLESICLVLLGTRLGLLGESPPSEAQQFIDAIKKMFESSAQLMLMPSLWRYFPTKVWKDFVRAWDQIFDVGDKYIDNAL  286 (519)
T ss_pred             HHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhHHHHHhcchHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999754       2333444444333222   11122 2  26777789999999999988888887765


Q ss_pred             hc----CC---CCCCHHHHHHhcccCcCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 041681          271 ES----GK---QIGGLLGVLLAAKDHKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGIL  343 (479)
Q Consensus       271 ~~----~~---~~~~~l~~ll~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~  343 (479)
                      +.    ..   ....++..++..     ++++.+++...+.+++.||.|||++++.|+||+|++||++|+++++|+..+.
T Consensus       287 ~~l~~~~~~~~~~~~~l~~~L~~-----~~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~~  361 (519)
T KOG0159|consen  287 EELEKQDSAGSEYTGSLLELLLR-----KELSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILAVL  361 (519)
T ss_pred             HHHHhccccccchhHHHHHHHHH-----ccCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHhhC
Confidence            44    11   123344444443     2589999999999999999999999999999999999999999999999887


Q ss_pred             hhhhhcCCCCCcccCCCCchHHHHHHHHhccCCCCCcccccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCC
Q 041681          344 RQKIEENRGLTWDDTRHMPLTTRVIQETLRTASILSFTFREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFD  423 (479)
Q Consensus       344 ~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~  423 (479)
                      ..   .+..++.+++.++|||+||||||+||||.+|.+.|...+|.+++||.|||||.|.++.+.+.+||++|++|++|+
T Consensus       362 p~---~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~  438 (519)
T KOG0159|consen  362 PS---GNSELTQKALTNMPYLRACIKETLRLYPVVPGNGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFL  438 (519)
T ss_pred             CC---cccccchHHHhhCHHHHHHHHhhhceeccccccccccchhceeccceecCCCeEEEeehhhccChhhCCCccccC
Confidence            64   356789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC----CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCCC
Q 041681          424 PSRFEAPP----RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKFQ  476 (479)
Q Consensus       424 PeR~~~~~----~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~  476 (479)
                      ||||+++.    ++..++|||.|+|+|+|+++|.+|+.+++++++++|+++..++.+
T Consensus       439 PeRWL~~~~~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~~p  495 (519)
T KOG0159|consen  439 PERWLKPSTKTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHEEP  495 (519)
T ss_pred             hhhhcccccCCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCCCC
Confidence            99999754    567899999999999999999999999999999999999988644


No 28 
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00  E-value=9e-66  Score=508.94  Aligned_cols=391  Identities=21%  Similarity=0.328  Sum_probs=310.5

Q ss_pred             ccccccccccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCCc-ccccccCCCcccccCch
Q 041681           76 IGETLKLYTQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYPP-SKEKMIGPEALFFHQGA  154 (479)
Q Consensus        76 lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~~-~~~~~~g~~~l~~~~g~  154 (479)
                      +||+..+.+++.+..+.+++++|||||++++|+.++++|+||+.+++|+.++...+...... ......| .+++..+|+
T Consensus       142 ~G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~~g-~~l~~~dge  220 (633)
T PLN02738        142 KGSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVMG-KGLIPADGE  220 (633)
T ss_pred             cCcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhccC-CceecCCcH
Confidence            45555554455667799999999999999999899999999999999998776555544221 1222334 567788999


Q ss_pred             HHHHHHHHHhhcCChHHHhhhHHHHHHHHHHHhhhhc-----cCccchHHHHHHHHHHHHHHHHcCCCCchh--HHhHHH
Q 041681          155 YHSRLKKLVQASFLPSAIRGSVSEIEQIVLKFLPTWK-----NATINTLQEMKKYAFDVAMISAFGYQHDLE--MEGIKN  227 (479)
Q Consensus       155 ~~~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~l~~l~-----~~~vdl~~~~~~~~~~~i~~~~fG~~~~~~--~~~~~~  227 (479)
                      .|+++|+.+++.|+...++.+.+.+.+.++++++.+.     ++.+|+.+.+..+++|+++..+||.+.+..  .+.+..
T Consensus       221 ~wr~rRr~l~p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI~~~~FG~~~~~~~~~~~~~~  300 (633)
T PLN02738        221 IWRVRRRAIVPALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLSNDTGIVE  300 (633)
T ss_pred             HHHHHHHhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHhCCCccccccchHHHH
Confidence            9999999999999999999999999999999998884     567999999999999999999999976521  122222


Q ss_pred             HHHHHHhh-----ccccCCC-CCC-----CchHHHHHHHHHHHHHHHHHHHHHHhc-------------CCCCCCHHHHH
Q 041681          228 LYQCIEKG-----YNSMPLD-LPG-----TPYHKAIKAREQLNETLRRLIQKRRES-------------GKQIGGLLGVL  283 (479)
Q Consensus       228 ~~~~~~~~-----~~~~~~~-~p~-----~~~~~~~~~~~~l~~~~~~~i~~~~~~-------------~~~~~~~l~~l  283 (479)
                      .+......     ...++.+ +|.     ...++..+..+.+.+.+.++++.+++.             .....++++.+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~l~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~dil~~L  380 (633)
T PLN02738        301 AVYTVLREAEDRSVSPIPVWEIPIWKDISPRQRKVAEALKLINDTLDDLIAICKRMVEEEELQFHEEYMNERDPSILHFL  380 (633)
T ss_pred             HHHHHHHHHHHHhhcchhhhhhhHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhcccccccchHHHHH
Confidence            22111111     1111211 111     011233334445555555554432210             11235788888


Q ss_pred             HhcccCcCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhhhcCCCCCcccCCCCch
Q 041681          284 LAAKDHKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKIEENRGLTWDDTRHMPL  363 (479)
Q Consensus       284 l~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~l~~  363 (479)
                      ++..    ..++++++.+++..+++||+|||+.+++|++++|++||++|+|+|+|++++++     ++.++++++++|||
T Consensus       381 l~~~----~~ls~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~~-----~~~~t~edL~kLPY  451 (633)
T PLN02738        381 LASG----DDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLG-----DRFPTIEDMKKLKY  451 (633)
T ss_pred             HHcC----CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcC-----CCCCCHHHHccCHH
Confidence            8753    35899999999999999999999999999999999999999999999999874     34679999999999


Q ss_pred             HHHHHHHHhccCCCCCcccccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCCCCCCCCC-------CCCCCc
Q 041681          364 TTRVIQETLRTASILSFTFREAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSRFEAP-------PRPNTY  436 (479)
Q Consensus       364 l~a~i~E~lRl~p~~~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~-------~~~~~~  436 (479)
                      |+|||+|+||++|+++.+.|.+.+|++++||.|||||.|.++.+.+||||++|+||++|+||||+..       .....+
T Consensus       452 L~AVIkEtLRL~p~~p~~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~  531 (633)
T PLN02738        452 TTRVINESLRLYPQPPVLIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSY  531 (633)
T ss_pred             HHHHHHHHHhcCCCccccceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCce
Confidence            9999999999999999888999999999999999999999999999999999999999999999842       123579


Q ss_pred             cccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCCC
Q 041681          437 MPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKFQ  476 (479)
Q Consensus       437 ~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~  476 (479)
                      +|||.|+|.|+|++||+.|++++++.|+++|+|++.++.+
T Consensus       532 vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~~  571 (633)
T PLN02738        532 LPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGAP  571 (633)
T ss_pred             eCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCCC
Confidence            9999999999999999999999999999999999987643


No 29 
>PLN02936 epsilon-ring hydroxylase
Probab=100.00  E-value=1.9e-64  Score=492.95  Aligned_cols=399  Identities=23%  Similarity=0.327  Sum_probs=318.5

Q ss_pred             CCCCcCCcccccccccc----ccCcchHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCC-ccccc
Q 041681           67 PPGSMGWPYIGETLKLY----TQNPNSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYP-PSKEK  141 (479)
Q Consensus        67 pPgp~~~P~lG~~~~~~----~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~-~~~~~  141 (479)
                      =.|..|||++|+.+.+.    .+.++..+.+|+++|||+|++++|+.+.++++||+++++++.+....|..... .....
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~~   93 (489)
T PLN02936         14 WGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSEF   93 (489)
T ss_pred             CCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhHH
Confidence            35788999999877754    35678889999999999999999999999999999999999876555554432 12223


Q ss_pred             ccCCCcccccCchHHHHHHHHHhhcCChHHHhhhHH-HHHHHHHHHhhhhc-----cCccchHHHHHHHHHHHHHHHHcC
Q 041681          142 MIGPEALFFHQGAYHSRLKKLVQASFLPSAIRGSVS-EIEQIVLKFLPTWK-----NATINTLQEMKKYAFDVAMISAFG  215 (479)
Q Consensus       142 ~~g~~~l~~~~g~~~~~~R~~~~~~f~~~~l~~~~~-~~~~~~~~~l~~l~-----~~~vdl~~~~~~~~~~~i~~~~fG  215 (479)
                      .+| .+++..+|+.|+++|+++++.|+...+..+.+ .+.+.++++++.+.     +.++|+.++++.+++++++.++||
T Consensus        94 ~~~-~~i~~~~g~~wk~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi~~~~fG  172 (489)
T PLN02936         94 LFG-SGFAIAEGELWTARRRAVVPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDVIGLSVFN  172 (489)
T ss_pred             Hhc-CccccCCchHHHHHHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHHcC
Confidence            455 67778899999999999999999888887755 66777788877763     467999999999999999999999


Q ss_pred             CCCchhH--HhHHHHHHHHHh-----hccccCCC-CC-----CCchHHHHHHHHHHHHHHHHHHHHHHhc----C-----
Q 041681          216 YQHDLEM--EGIKNLYQCIEK-----GYNSMPLD-LP-----GTPYHKAIKAREQLNETLRRLIQKRRES----G-----  273 (479)
Q Consensus       216 ~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~-~p-----~~~~~~~~~~~~~l~~~~~~~i~~~~~~----~-----  273 (479)
                      .+.+...  ..+.........     ....+|.+ .+     .+..++..++.+.+.+.+.+.++++++.    .     
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~  252 (489)
T PLN02936        173 YNFDSLTTDSPVIQAVYTALKEAETRSTDLLPYWKVDFLCKISPRQIKAEKAVTVIRETVEDLVDKCKEIVEAEGEVIEG  252 (489)
T ss_pred             CCccccccCcHHHHHHHHHHHHHHHhhhccchHHhhHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            9865321  112221111111     11112211 00     1123455666777777877777665431    0     


Q ss_pred             -----CCCCCHHHHHHhcccCcCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhhh
Q 041681          274 -----KQIGGLLGVLLAAKDHKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKIE  348 (479)
Q Consensus       274 -----~~~~~~l~~ll~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~  348 (479)
                           ....++++.+++..+    .++++++.+++..+++||+|||+++++|++++|++||++|+|+++|++++++    
T Consensus       253 ~~~~~~~~~d~l~~ll~~~~----~~~~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~----  324 (489)
T PLN02936        253 EEYVNDSDPSVLRFLLASRE----EVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQ----  324 (489)
T ss_pred             ccccccCchHHHHHHHhccc----cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc----
Confidence                 123578888887542    4899999999999999999999999999999999999999999999999875    


Q ss_pred             cCCCCCcccCCCCchHHHHHHHHhccCCCCCccc-ccccccceecCEEeCCCCEEeecccccccCCCCCCCCCCCCCCCC
Q 041681          349 ENRGLTWDDTRHMPLTTRVIQETLRTASILSFTF-REAVQDVEFEGYIIPRGWKVLPLFRSIHHCADFFPQPEKFDPSRF  427 (479)
Q Consensus       349 ~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~-R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~PeR~  427 (479)
                       +..++++++++||||+|||+||+|++|+++... |.+.+|+.++||.||||+.|+++.+++||||++|+||++|+||||
T Consensus       325 -~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRw  403 (489)
T PLN02936        325 -GRPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERF  403 (489)
T ss_pred             -CCCCCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCcccc
Confidence             234789999999999999999999999998766 445677778999999999999999999999999999999999999


Q ss_pred             CCCC-------CCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCCC
Q 041681          428 EAPP-------RPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSKF  475 (479)
Q Consensus       428 ~~~~-------~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~  475 (479)
                      +.+.       .+..++|||.|+|.|+|+++|++|+++++++|+++|++++.++.
T Consensus       404 l~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~  458 (489)
T PLN02936        404 DLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQ  458 (489)
T ss_pred             CCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCC
Confidence            8532       13479999999999999999999999999999999999998754


No 30 
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00  E-value=6.9e-63  Score=480.99  Aligned_cols=389  Identities=19%  Similarity=0.301  Sum_probs=308.6

Q ss_pred             CccccccccccccCcchHHHHHHHHcC-CeEEEeecCccEEEEeChHHHHHHHHhCCccccCCCC--cccccccCCCccc
Q 041681           73 WPYIGETLKLYTQNPNSFFSNRQKRYG-DIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYP--PSKEKMIGPEALF  149 (479)
Q Consensus        73 ~P~lG~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~--~~~~~~~g~~~l~  149 (479)
                      .++.|+....+ .+...++..+.++++ .+++++.++.  ++++||+.+++++.++...|.+...  ......+| .+++
T Consensus        49 ~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~g-~gi~  124 (502)
T PLN02426         49 AYLTASWAKDF-DNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLLG-RGIF  124 (502)
T ss_pred             CCccHHHHHhc-ccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhcC-Ccee
Confidence            45778876654 445677777888887 4777766554  8999999999999887555543322  22334566 6888


Q ss_pred             ccCchHHHHHHHHHhhcCChHHHhhhH--HHHHHHHHHHhhhhc-------cCccchHHHHHHHHHHHHHHHHcCCCCch
Q 041681          150 FHQGAYHSRLKKLVQASFLPSAIRGSV--SEIEQIVLKFLPTWK-------NATINTLQEMKKYAFDVAMISAFGYQHDL  220 (479)
Q Consensus       150 ~~~g~~~~~~R~~~~~~f~~~~l~~~~--~~~~~~~~~~l~~l~-------~~~vdl~~~~~~~~~~~i~~~~fG~~~~~  220 (479)
                      +.+|+.|+++|+++++.|+...++.+.  +.+++..+++++.+.       +.++|+.++++.+++|+++.++||.+.+.
T Consensus       125 ~~~g~~wk~~Rk~l~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~  204 (502)
T PLN02426        125 NVDGDSWRFQRKMASLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGLDPGC  204 (502)
T ss_pred             ecCcHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            899999999999999999999888764  455666666665543       24699999999999999999999997542


Q ss_pred             h-----HHhHHHHHHHHHhh-----ccccC------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCHHHHH
Q 041681          221 E-----MEGIKNLYQCIEKG-----YNSMP------LDLPGTPYHKAIKAREQLNETLRRLIQKRRESG-KQIGGLLGVL  283 (479)
Q Consensus       221 ~-----~~~~~~~~~~~~~~-----~~~~~------~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~-~~~~~~l~~l  283 (479)
                      .     ..++...+..+...     +...+      .+++....++..++.+.+.+++.+.|+++++.. +...|+++.+
T Consensus       205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~~~~~dll~~l  284 (502)
T PLN02426        205 LELSLPISEFADAFDTASKLSAERAMAASPLLWKIKRLLNIGSERKLKEAIKLVDELAAEVIRQRRKLGFSASKDLLSRF  284 (502)
T ss_pred             cCCCCCccHHHHHHHHHHHHHHHHHhcchhHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHH
Confidence            1     12233333322110     11111      112222235566778888899999998887643 2357899999


Q ss_pred             HhcccCcCCCCCHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhhhhhcCCCCCcccCCCCch
Q 041681          284 LAAKDHKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILRQKIEENRGLTWDDTRHMPL  363 (479)
Q Consensus       284 l~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~l~~  363 (479)
                      ++..      .+++++.+++.++++||+|||+++++|++++|++||++|+|+++|++.+.++   +...++++++++|||
T Consensus       285 l~~~------~~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~---~~~~~t~~~l~~LpY  355 (502)
T PLN02426        285 MASI------NDDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGP---NQEAASFEEMKEMHY  355 (502)
T ss_pred             HhcC------CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC---CCCCCCHHHHhcChH
Confidence            9763      2688999999999999999999999999999999999999999999988653   234689999999999


Q ss_pred             HHHHHHHHhccCCCCCccccccccccee-cCEEeCCCCEEeecccccccCCCCC-CCCCCCCCCCCCCCC-----CCCCc
Q 041681          364 TTRVIQETLRTASILSFTFREAVQDVEF-EGYIIPRGWKVLPLFRSIHHCADFF-PQPEKFDPSRFEAPP-----RPNTY  436 (479)
Q Consensus       364 l~a~i~E~lRl~p~~~~~~R~~~~d~~l-~g~~ip~G~~v~~~~~~~~~d~~~~-~~p~~F~PeR~~~~~-----~~~~~  436 (479)
                      |+|||+|+||++|++|...|.+.+|.++ +|+.|||||.|.++.+++||||++| +||++|+||||+++.     .+..+
T Consensus       356 l~avi~EtLRl~p~v~~~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~  435 (502)
T PLN02426        356 LHAALYESMRLFPPVQFDSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKY  435 (502)
T ss_pred             HHHHHHHHHhCCCCCCCcceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCccc
Confidence            9999999999999999888999999887 8999999999999999999999999 999999999999732     24468


Q ss_pred             cccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCC
Q 041681          437 MPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSK  474 (479)
Q Consensus       437 ~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~  474 (479)
                      +|||.|+|.|+|+++|++|++++++.|+++|++++.++
T Consensus       436 ~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~  473 (502)
T PLN02426        436 PVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGR  473 (502)
T ss_pred             CCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecC
Confidence            99999999999999999999999999999999998643


No 31 
>PLN02648 allene oxide synthase
Probab=100.00  E-value=5.3e-61  Score=460.35  Aligned_cols=392  Identities=20%  Similarity=0.325  Sum_probs=300.6

Q ss_pred             CCCCCCCCCcCCcccccccccc----ccCcchHHHHHHHHcCC-eEEEeecCccE-------EEEeChHHHHHHHHh---
Q 041681           62 KDKRFPPGSMGWPYIGETLKLY----TQNPNSFFSNRQKRYGD-IFKTHILGCPC-------VMISSPEAAKIVLVS---  126 (479)
Q Consensus        62 ~~~~~pPgp~~~P~lG~~~~~~----~~~~~~~~~~~~~~yG~-i~~~~~~~~~~-------vvv~dp~~~~~i~~~---  126 (479)
                      .+.+.|||+.|||++|++.+++    ..++..|+.+.++|||+ ||+++++|.+.       |+++||+.++.+++.   
T Consensus        14 ~~~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~   93 (480)
T PLN02648         14 LPLREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKV   93 (480)
T ss_pred             CCCCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhc
Confidence            3456699999999999998654    35667999999999999 99999998665       999999999999985   


Q ss_pred             -CCccccCCCCcccccccCCC---cccccCchHHHHHHHHHhhcCChHHHhhhHHHHHHHHHHHhhhhc-----cCccch
Q 041681          127 -KAHLFKPTYPPSKEKMIGPE---ALFFHQGAYHSRLKKLVQASFLPSAIRGSVSEIEQIVLKFLPTWK-----NATINT  197 (479)
Q Consensus       127 -~~~~~~~~~~~~~~~~~g~~---~l~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~l~~l~-----~~~vdl  197 (479)
                       +...+...++.... ++|+.   +++..+|+.|+++|+++.+.|+ ..++.+.+.+.+.+.++++.|.     +..+|+
T Consensus        94 ~~~~~~~~~~~~~~~-l~G~~~~~s~~~~~g~~H~r~Rrll~~~f~-~~~~~~~~~m~~~~~~~~~~w~~~~~~~~~vdv  171 (480)
T PLN02648         94 DKRDVFTGTYMPSTA-FTGGYRVLSYLDPSEPKHAKLKSFLFELLK-SRHRRFIPEFRAAFAELFDTWEAELAKKGKAEF  171 (480)
T ss_pred             cccccceeeeccCcc-ccCCceeeeecCCCCchHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhhCCCccc
Confidence             44334445554444 78865   7777899999999999999999 5778899999999999999994     347999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCchhHHhHHHHHHHHHhhccc---cCC---CCCCCchHH------------HHHHHHHHH
Q 041681          198 LQEMKKYAFDVAMISAFGYQHDLEMEGIKNLYQCIEKGYNS---MPL---DLPGTPYHK------------AIKAREQLN  259 (479)
Q Consensus       198 ~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~p~~~~~~------------~~~~~~~l~  259 (479)
                      .+.+..+++|++++++||.+.+.  +.+.+.+..+...+..   +|.   .++.. ..+            ..+..+++.
T Consensus       172 ~~~~~~lt~~vi~~~lfG~~~~~--~~l~~~~~~~~~~~~~~~~~p~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~~~~~  248 (480)
T PLN02648        172 NDPLDQMAFNFLCKALTGKDPSE--TALGSDGPALIQKWLALQLAPLASTGLPHV-LEELLLHTFPLPFFLVKSDYDKLY  248 (480)
T ss_pred             cchHHHHHHHHHHHHHcCCCcch--hhhccchhHHHHHHHHHHhhHHHHcCchHH-HHHHhhcccCCchhhhhccHHHHH
Confidence            99999999999999999986554  1222222211111100   111   00000 000            001111112


Q ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHhcccCcCCCCCHHHHHHHHHH-HHHhhhHhhHHHHHHHHHHHhhCHH-HHHHHHH
Q 041681          260 ETLRRLIQKRRESGKQIGGLLGVLLAAKDHKLNQLSDSQIADNIIG-VIFAAHDTTASVLTWVLKYLHDNQD-LLDAVTR  337 (479)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~i~~~~~~-~~~ag~~tt~~~l~~~l~~L~~~p~-~~~kl~~  337 (479)
                      +.+++.              +..+++..++  ..++++++.++++. +.+++++|++.+++|++++|++||+ +|+|+++
T Consensus       249 ~~~~~~--------------~~~ll~~~~~--~~l~~~ei~~~~l~~~~~~t~~~~~~~l~~~l~~L~~~p~~v~~klr~  312 (480)
T PLN02648        249 DFFRAS--------------ATEALDLAEK--FGISREEALHNLLFVLGFNAFGGFKIFFPALLKWVGRAGEELQARLAE  312 (480)
T ss_pred             HHHHHH--------------HHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            222111              1233332222  24899999998875 3466777778899999999999995 9999999


Q ss_pred             HHHHHHhhhhhcCCCCCcccCCCCchHHHHHHHHhccCCCCCcccccccccceec----CEEeCCCCEEeecccccccCC
Q 041681          338 EQEGILRQKIEENRGLTWDDTRHMPLTTRVIQETLRTASILSFTFREAVQDVEFE----GYIIPRGWKVLPLFRSIHHCA  413 (479)
Q Consensus       338 Ei~~~~~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~R~~~~d~~l~----g~~ip~G~~v~~~~~~~~~d~  413 (479)
                      |++.+.+.   .+..++++++++|||+++||+|+||++|+++...|++.+|++++    ||.||||+.|+++.+.+||||
T Consensus       313 Ei~~~~~~---~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp  389 (480)
T PLN02648        313 EVRSAVKA---GGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDP  389 (480)
T ss_pred             HHHHHhcc---CCCCCCHHHHhcCHHHHHHHHHHHhhcCCcccccceecCCEEEecCCceEEECCCCEEEEChHHHhCCc
Confidence            99998742   23468999999999999999999999999998889999999996    799999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCC--CCCCcccc---------CCCCCCCcchHHHHHHHHHHHHHHHhhCc-eeccCCCCC
Q 041681          414 DFFPQPEKFDPSRFEAPP--RPNTYMPF---------GNGVHSCPGSELAKLEMHIFIHHLTTTYR-SLSFSKFQN  477 (479)
Q Consensus       414 ~~~~~p~~F~PeR~~~~~--~~~~~~~F---------g~G~r~C~G~~la~~~~~~~l~~ll~~f~-~~~~~~~~~  477 (479)
                      ++|+||++|+||||+++.  ....+++|         |.|+|.|+|++||+.|+++++++|+++|+ |++.++..-
T Consensus       390 ~~~~dP~~F~PeRf~~~~~~~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~~~  465 (480)
T PLN02648        390 KVFDRPEEFVPDRFMGEEGEKLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDTSG  465 (480)
T ss_pred             ccCCCcceeCCCCCCCCCccccccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCccc
Confidence            999999999999998642  22345555         56779999999999999999999999998 998877654


No 32 
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00  E-value=4e-56  Score=422.02  Aligned_cols=356  Identities=31%  Similarity=0.495  Sum_probs=300.5

Q ss_pred             cchHHHHHHHHcCCeEEEeecCcc--EEEEeChHHHHHHHHhCCccccCCCC-----cccccccCCCcccccCchHHHHH
Q 041681           87 PNSFFSNRQKRYGDIFKTHILGCP--CVMISSPEAAKIVLVSKAHLFKPTYP-----PSKEKMIGPEALFFHQGAYHSRL  159 (479)
Q Consensus        87 ~~~~~~~~~~~yG~i~~~~~~~~~--~vvv~dp~~~~~i~~~~~~~~~~~~~-----~~~~~~~g~~~l~~~~g~~~~~~  159 (479)
                      +..+...+.+.||.+++++..++.  .+++++++++++++.++.. +++...     ......+|...++..+|+.|+++
T Consensus        24 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~  102 (411)
T COG2124          24 PRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPRF-FSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRL  102 (411)
T ss_pred             hhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCccc-ccccccccccccchhhhccccceeecCCHHHHHH
Confidence            344455677889999998876665  8999999999999999852 222221     11345666555888999999999


Q ss_pred             HHHHhhcCChHHHhhhHHHHHHHHHHHhhhhc-cCccchHHHHHHHHHHHHHHHHcCCCCchhHHhHHHHHHHHHhhccc
Q 041681          160 KKLVQASFLPSAIRGSVSEIEQIVLKFLPTWK-NATINTLQEMKKYAFDVAMISAFGYQHDLEMEGIKNLYQCIEKGYNS  238 (479)
Q Consensus       160 R~~~~~~f~~~~l~~~~~~~~~~~~~~l~~l~-~~~vdl~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~  238 (479)
                      |++++++|+++.++++.+.+.+.++++++.+. +...++.+....+++++++ .+||.+.+...... ........... 
T Consensus       103 Rkl~~~~F~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~a~~l~~~vi~-~l~Gv~~~~~~~~~-~~~~~~~~~~~-  179 (411)
T COG2124         103 RKLLAPAFTPRALRGYRPLIREIADRLLDDLWQGGADLVLDFAAELTLRVIA-ELLGVPLEDRPQLL-RWSDALLLRLD-  179 (411)
T ss_pred             HHHhccccCHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHhhhhhHHHHH-HHhCCCHHHHHHHH-HHHHHHHhccC-
Confidence            99999999999999999999999999999884 3467788999999999999 99998655433332 22222222211 


Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhcccCcCCCCCHHHHHHHHHHHHHhhhHhhHHHH
Q 041681          239 MPLDLPGTPYHKAIKAREQLNETLRRLIQKRRESGKQIGGLLGVLLAAKDHKLNQLSDSQIADNIIGVIFAAHDTTASVL  318 (479)
Q Consensus       239 ~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l  318 (479)
                       +...+...+.+..++..++.+++.++|++++.  ...+|+++.++...++++..+|++|+.+++.++++||+|||++++
T Consensus       180 -~~~~~~~~~~~~~~a~~~~~~~~~~li~~rR~--~~~~dlls~l~~a~~~~~~~lsd~Ei~~~~~~ll~AGheTTa~~l  256 (411)
T COG2124         180 -PDLGPEEPWRRARAARRELDAYLRALIAERRA--APRDDLLSLLLSAEDDGGGRLSDDEIRDELITLLVAGHETTANAL  256 (411)
T ss_pred             -cccCCcccHHHHHHHHHHHHHHHHHHHHHhcc--CCcccHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence             33344444677888999999999999999984  445899999999887766579999999999999999999999999


Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHHhhhhhcCCCCCcccCCCCchHHHHHHHHhccCCCCCcccccccccceecCEEeCC
Q 041681          319 TWVLKYLHDNQDLLDAVTREQEGILRQKIEENRGLTWDDTRHMPLTTRVIQETLRTASILSFTFREAVQDVEFEGYIIPR  398 (479)
Q Consensus       319 ~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~~~R~~~~d~~l~g~~ip~  398 (479)
                      +|+++.|++||++++++++|.+.                    ||+.++++|+||++||++...|.+.+|++++|+.|||
T Consensus       257 ~~a~~~L~~~P~~~~~l~~e~~~--------------------~~~~~~v~E~LR~~ppv~~~~R~~~~d~~igg~~Ip~  316 (411)
T COG2124         257 AWALYALLRHPDQLAKLRAEPDR--------------------PLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPA  316 (411)
T ss_pred             HHHHHHHHHCchHHHHHHhCcch--------------------HHHHHHHHHHHHhCCchhccceeccCCEeeCCEEeCC
Confidence            99999999999999999999653                    6889999999999999999779999999999999999


Q ss_pred             CCEEeecccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCcchHHHHHHHHHHHHHHHhhCceeccCC
Q 041681          399 GWKVLPLFRSIHHCADFFPQPEKFDPSRFEAPPRPNTYMPFGNGVHSCPGSELAKLEMHIFIHHLTTTYRSLSFSK  474 (479)
Q Consensus       399 G~~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~  474 (479)
                      |+.|+++.+++||||++|+||++|||+||.     ..|+|||+|+|.|+|+.||++|++++++.++++|++....+
T Consensus       317 G~~V~~~~~~anrDp~~f~~P~~F~p~R~~-----~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~  387 (411)
T COG2124         317 GTVVLLSIGAANRDPEVFPDPDEFDPERFN-----NAHLPFGGGPHRCLGAALARLELKVALAELLRRFPLLLLAE  387 (411)
T ss_pred             CCEEEecHhhhcCChhhCCChhhcCCCCCC-----CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcCC
Confidence            999999999999999999999999999988     78999999999999999999999999999999999888765


No 33 
>PF08492 SRP72:  SRP72 RNA-binding domain;  InterPro: IPR013699  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=69.65  E-value=3.2  Score=26.93  Aligned_cols=8  Identities=38%  Similarity=0.738  Sum_probs=6.0

Q ss_pred             CCCCCCCC
Q 041681          423 DPSRFEAP  430 (479)
Q Consensus       423 ~PeR~~~~  430 (479)
                      ||||||.-
T Consensus        44 DPERWLP~   51 (59)
T PF08492_consen   44 DPERWLPK   51 (59)
T ss_pred             CccccCch
Confidence            78888863


No 34 
>PHA03049 IMV membrane protein; Provisional
Probab=61.77  E-value=21  Score=23.49  Aligned_cols=37  Identities=11%  Similarity=0.257  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCccc
Q 041681           40 FLLSFSSLLLLLLLVLLQWRQPKDKRFPPGSMGWPYI   76 (479)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pPgp~~~P~l   76 (479)
                      +++++|++++.++++..+.+.......||.+-..+..
T Consensus         6 ~l~iICVaIi~lIvYgiYnkk~~~q~~~p~~e~ye~~   42 (68)
T PHA03049          6 ILVIICVVIIGLIVYGIYNKKTTTSQNPPSQEKYEKM   42 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCCCCChhhccCc
Confidence            4556677776677777777766665666554433333


No 35 
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=59.97  E-value=5.2  Score=35.21  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHhhCCCCC
Q 041681           45 SSLLLLLLLVLLQWRQPKDK   64 (479)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~   64 (479)
                      ++++++++.+|+++|+...+
T Consensus       271 l~vvliiLYiWlyrrRK~sw  290 (295)
T TIGR01478       271 LTVVLIILYIWLYRRRKKSW  290 (295)
T ss_pred             HHHHHHHHHHHHHHhhcccc
Confidence            33444444555555554444


No 36 
>PF12554 MOZART1:  Mitotic-spindle organizing gamma-tubulin ring associated;  InterPro: IPR022214  This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important. 
Probab=59.29  E-value=34  Score=21.22  Aligned_cols=43  Identities=19%  Similarity=0.122  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHH
Q 041681          297 SQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQ  339 (479)
Q Consensus       297 ~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei  339 (479)
                      -++...+..++-.|.|..+..+.-.+.+..-||+...++..|+
T Consensus         5 ~d~l~eiS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~el   47 (48)
T PF12554_consen    5 LDVLHEISDLLNTGLDRETLSICIELCENGVNPEALAAVIKEL   47 (48)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence            3566777788888888888899999999999999998887775


No 37 
>PF05393 Hum_adeno_E3A:  Human adenovirus early E3A glycoprotein;  InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=46.76  E-value=72  Score=22.54  Aligned_cols=17  Identities=18%  Similarity=0.315  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHhh
Q 041681           43 SFSSLLLLLLLVLLQWR   59 (479)
Q Consensus        43 ~~~~~~~~~~~~~~~~~   59 (479)
                      +++.++++++...+.++
T Consensus        43 iFil~VilwfvCC~kRk   59 (94)
T PF05393_consen   43 IFILLVILWFVCCKKRK   59 (94)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            33334444444444443


No 38 
>PF05952 ComX:  Bacillus competence pheromone ComX;  InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible.  DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=46.15  E-value=21  Score=22.99  Aligned_cols=18  Identities=22%  Similarity=0.599  Sum_probs=15.4

Q ss_pred             HHHHHhhCHHHHHHHHHH
Q 041681          321 VLKYLHDNQDLLDAVTRE  338 (479)
Q Consensus       321 ~l~~L~~~p~~~~kl~~E  338 (479)
                      .+.+|.+||++.+++.+.
T Consensus         5 iV~YLv~nPevl~kl~~g   22 (57)
T PF05952_consen    5 IVNYLVQNPEVLEKLKEG   22 (57)
T ss_pred             HHHHHHHChHHHHHHHcC
Confidence            567899999999998764


No 39 
>PF05961 Chordopox_A13L:  Chordopoxvirus A13L protein;  InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=45.55  E-value=57  Score=21.73  Aligned_cols=30  Identities=17%  Similarity=0.238  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 041681           40 FLLSFSSLLLLLLLVLLQWRQPKDKRFPPG   69 (479)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pPg   69 (479)
                      +++++|++++.++++..+.+.......||.
T Consensus         6 iLi~ICVaii~lIlY~iYnr~~~~q~~~~~   35 (68)
T PF05961_consen    6 ILIIICVAIIGLILYGIYNRKKTTQNTNPS   35 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCCCCc
Confidence            455667666666666666665544444443


No 40 
>PF12508 DUF3714:  Protein of unknown function (DUF3714) ;  InterPro: IPR022187  Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. 
Probab=42.44  E-value=21  Score=30.25  Aligned_cols=44  Identities=16%  Similarity=0.212  Sum_probs=31.9

Q ss_pred             CCchHHHHHHHHhccCCCCCcccccccccceecCEEeCCCCEEee
Q 041681          360 HMPLTTRVIQETLRTASILSFTFREAVQDVEFEGYIIPRGWKVLP  404 (479)
Q Consensus       360 ~l~~l~a~i~E~lRl~p~~~~~~R~~~~d~~l~g~~ip~G~~v~~  404 (479)
                      .-....|||.|+.-...-.. +-=+..+|+.++|..|||||.++-
T Consensus        51 ~~n~I~A~V~~~qtv~~Gs~-vrlRLle~i~i~g~~IPkgt~l~G   94 (200)
T PF12508_consen   51 EKNTIRAVVDGTQTVVDGSR-VRLRLLEDIQIGGILIPKGTYLYG   94 (200)
T ss_pred             CCCeEEEEEecceEEeCCCE-EEEEEcCceEECCEEeCCCCEEEE
Confidence            34567889999876654222 222346899999999999999876


No 41 
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=41.18  E-value=92  Score=23.06  Aligned_cols=63  Identities=19%  Similarity=0.141  Sum_probs=39.5

Q ss_pred             CCCCCCCCCCcCCccccccccccccCcchHHHHHHHHcCCeEEEeecC------ccEEEEeChHHHHHHHHh
Q 041681           61 PKDKRFPPGSMGWPYIGETLKLYTQNPNSFFSNRQKRYGDIFKTHILG------CPCVMISSPEAAKIVLVS  126 (479)
Q Consensus        61 ~~~~~~pPgp~~~P~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~------~~~vvv~dp~~~~~i~~~  126 (479)
                      ....+.||-...+-++.|+..   +-..+-.-++.-+||+|..+++|.      .-+||-.|-..++.....
T Consensus         8 ~~~~rlppevnriLyirNLp~---~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh   76 (124)
T KOG0114|consen    8 KQNIRLPPEVNRILYIRNLPF---KITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH   76 (124)
T ss_pred             cCCCCCChhhheeEEEecCCc---cccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH
Confidence            344455665555555555432   222344667889999999999974      446776777777666544


No 42 
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=38.23  E-value=1.4e+02  Score=28.97  Aligned_cols=37  Identities=16%  Similarity=0.328  Sum_probs=19.8

Q ss_pred             HHcCCeEEEeecCccEEEEeChHHHHHHHHhCCcccc
Q 041681           96 KRYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFK  132 (479)
Q Consensus        96 ~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~  132 (479)
                      -+||.|++-.+-++.+-|=.=|..-++=+.+..+.|+
T Consensus       221 Grfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~  257 (534)
T KOG3653|consen  221 GRFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYS  257 (534)
T ss_pred             CccceeehhhccCceeEEEecCHHHHHHHHhHHHHHh
Confidence            4688888877766554443333333444444444444


No 43 
>PTZ00370 STEVOR; Provisional
Probab=36.14  E-value=28  Score=30.93  Aligned_cols=18  Identities=22%  Similarity=0.525  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHhhCCCC
Q 041681           46 SLLLLLLLVLLQWRQPKD   63 (479)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~   63 (479)
                      +++++++.+|+++|+...
T Consensus       268 ~vvliilYiwlyrrRK~s  285 (296)
T PTZ00370        268 AVVLIILYIWLYRRRKNS  285 (296)
T ss_pred             HHHHHHHHHHHHHhhcch
Confidence            333444444555554443


No 44 
>PF09201 SRX:  SRX;  InterPro: IPR015284  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel.  This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=35.58  E-value=32  Score=26.71  Aligned_cols=24  Identities=29%  Similarity=0.618  Sum_probs=17.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHHhhC
Q 041681          444 HSCPGSELAKLEMHIFIHHLTTTY  467 (479)
Q Consensus       444 r~C~G~~la~~~~~~~l~~ll~~f  467 (479)
                      .+|.|++||..++-.+|.+|+..-
T Consensus        18 yN~~gKKFsE~QiN~FIs~lItsP   41 (148)
T PF09201_consen   18 YNCLGKKFSETQINAFISHLITSP   41 (148)
T ss_dssp             EETTS----HHHHHHHHHHHHHS-
T ss_pred             ecccchHHHHHHHHHHHHHHhcCC
Confidence            379999999999999999998764


No 45 
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=34.11  E-value=12  Score=30.24  Aligned_cols=30  Identities=20%  Similarity=0.564  Sum_probs=24.9

Q ss_pred             CCCCCCCCC-----CCCCCCccccCCCCCCCcchH
Q 041681          421 KFDPSRFEA-----PPRPNTYMPFGNGVHSCPGSE  450 (479)
Q Consensus       421 ~F~PeR~~~-----~~~~~~~~~Fg~G~r~C~G~~  450 (479)
                      +|+|++|=+     +.++...+-|..|+=.|-|.+
T Consensus        36 eYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK   70 (185)
T COG2101          36 EYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK   70 (185)
T ss_pred             ccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence            799999954     356678899999999999964


No 46 
>PF11227 DUF3025:  Protein of unknown function (DUF3025);  InterPro: IPR021390  Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function. 
Probab=33.94  E-value=25  Score=29.79  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=19.5

Q ss_pred             ecccccccCCCCCCCCCCCCCCC
Q 041681          404 PLFRSIHHCADFFPQPEKFDPSR  426 (479)
Q Consensus       404 ~~~~~~~~d~~~~~~p~~F~PeR  426 (479)
                      ...+.-|.|+.+|.|...|+|-|
T Consensus       189 PGW~~~n~~~~FY~d~~~FRp~R  211 (212)
T PF11227_consen  189 PGWWPDNEDPAFYDDTDVFRPGR  211 (212)
T ss_pred             CCCCCCCCCcccccCccccCCCC
Confidence            34556699999999999999988


No 47 
>PF11138 DUF2911:  Protein of unknown function (DUF2911);  InterPro: IPR021314  This bacterial family of proteins has no known function. 
Probab=31.08  E-value=58  Score=25.93  Aligned_cols=42  Identities=21%  Similarity=0.273  Sum_probs=28.8

Q ss_pred             cccccceecCEEeCCCCEEeecccc-------cccCCCCCCCCCCCCCCC
Q 041681          384 EAVQDVEFEGYIIPRGWKVLPLFRS-------IHHCADFFPQPEKFDPSR  426 (479)
Q Consensus       384 ~~~~d~~l~g~~ip~G~~v~~~~~~-------~~~d~~~~~~p~~F~PeR  426 (479)
                      ...+|++++|..||+|+.-+.....       +|+|.+-|.. ..++|+.
T Consensus        51 ~f~~dv~igGk~l~AG~Ysl~tiP~~~~WtvI~n~~~~~wG~-~~Y~~~~   99 (145)
T PF11138_consen   51 TFSKDVTIGGKKLKAGTYSLFTIPGEDEWTVIFNKDTDQWGA-YNYDPSK   99 (145)
T ss_pred             EECCCeEECCEEcCCeeEEEEEecCCCeEEEEEECCCCccCc-cccCchh
Confidence            3457999999999999977655433       4666666754 4455553


No 48 
>PF07886 BA14K:  BA14K-like protein;  InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process []. 
Probab=30.62  E-value=45  Score=18.46  Aligned_cols=16  Identities=38%  Similarity=0.731  Sum_probs=12.9

Q ss_pred             CCCCccccCCCCCCCc
Q 041681          432 RPNTYMPFGNGVHSCP  447 (479)
Q Consensus       432 ~~~~~~~Fg~G~r~C~  447 (479)
                      ....|+++++..|.|.
T Consensus        16 ~~~Ty~~~~G~r~~C~   31 (31)
T PF07886_consen   16 RDNTYQPYDGPRRFCR   31 (31)
T ss_pred             CCCcEeCCCCccccCc
Confidence            3578999998888884


No 49 
>PF09926 DUF2158:  Uncharacterized small protein (DUF2158);  InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function. 
Probab=28.66  E-value=60  Score=20.67  Aligned_cols=17  Identities=18%  Similarity=0.219  Sum_probs=15.2

Q ss_pred             cCCeEEEeecCccEEEE
Q 041681           98 YGDIFKTHILGCPCVMI  114 (479)
Q Consensus        98 yG~i~~~~~~~~~~vvv  114 (479)
                      -|+++++.-||+.++|.
T Consensus         3 ~GDvV~LKSGGp~MTV~   19 (53)
T PF09926_consen    3 IGDVVQLKSGGPRMTVT   19 (53)
T ss_pred             CCCEEEEccCCCCeEEE
Confidence            48999999999999986


No 50 
>PRK06789 flagellar motor switch protein; Validated
Probab=28.22  E-value=68  Score=22.10  Aligned_cols=39  Identities=13%  Similarity=0.083  Sum_probs=29.0

Q ss_pred             HHHHHhccCCCCCccc-ccccc--cceecCEEeCCCCEEeec
Q 041681          367 VIQETLRTASILSFTF-REAVQ--DVEFEGYIIPRGWKVLPL  405 (479)
Q Consensus       367 ~i~E~lRl~p~~~~~~-R~~~~--d~~l~g~~ip~G~~v~~~  405 (479)
                      -++|.+.+.+-.-.-. |.+.+  |..++|..|.+|..|.++
T Consensus        21 ~i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~   62 (74)
T PRK06789         21 KIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKN   62 (74)
T ss_pred             EHHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEEC
Confidence            4788899987655433 66655  456699999999999875


No 51 
>PF13625 Helicase_C_3:  Helicase conserved C-terminal domain
Probab=25.35  E-value=1.5e+02  Score=23.04  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=29.7

Q ss_pred             chHHHHHHHHcCCeEEEeecCccEEEEeChHHHHHHHHhCC
Q 041681           88 NSFFSNRQKRYGDIFKTHILGCPCVMISSPEAAKIVLVSKA  128 (479)
Q Consensus        88 ~~~~~~~~~~yG~i~~~~~~~~~~vvv~dp~~~~~i~~~~~  128 (479)
                      ...+.+|.++||.+--.  .+...+...|++.++++.+.+.
T Consensus        77 ~~~i~~w~~~~g~v~l~--~~~~~l~~~d~~~l~~l~~~~~  115 (129)
T PF13625_consen   77 EQSIEDWARRYGRVRLY--KGAYLLECDDPELLDELLADPE  115 (129)
T ss_pred             HHHHHHHHHhcCCEEEe--cCeEEEEECCHHHHHHHHhChh
Confidence            35689999999986542  1466777889999999987764


No 52 
>PF07849 DUF1641:  Protein of unknown function (DUF1641);  InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long. 
Probab=25.34  E-value=89  Score=18.68  Aligned_cols=19  Identities=11%  Similarity=0.008  Sum_probs=14.8

Q ss_pred             HHHHHHHhhCHHHHHHHHH
Q 041681          319 TWVLKYLHDNQDLLDAVTR  337 (479)
Q Consensus       319 ~~~l~~L~~~p~~~~kl~~  337 (479)
                      .|-+.-++++||+|.-+.=
T Consensus        13 l~gl~~~l~DpdvqrgL~~   31 (42)
T PF07849_consen   13 LFGLLRALRDPDVQRGLGF   31 (42)
T ss_pred             HHHHHHHHcCHHHHHHHHH
Confidence            4667788999999987653


No 53 
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=24.08  E-value=1.2e+02  Score=20.42  Aligned_cols=24  Identities=4%  Similarity=0.133  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHH
Q 041681          315 ASVLTWVLKYLHDNQDLLDAVTRE  338 (479)
Q Consensus       315 ~~~l~~~l~~L~~~p~~~~kl~~E  338 (479)
                      ....+.++--++|+||.+.+++.-
T Consensus        20 G~v~~~a~e~iaRqPE~~~~i~~~   43 (66)
T PRK13467         20 GFLMANLFKSAARQPEMIGQLRSL   43 (66)
T ss_pred             HHHHHHHHHHHHcChhHHHhHHHH
Confidence            445666788999999999998765


No 54 
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=23.68  E-value=37  Score=21.48  Aligned_cols=10  Identities=50%  Similarity=1.089  Sum_probs=8.5

Q ss_pred             ccCCCCCCCc
Q 041681          438 PFGNGVHSCP  447 (479)
Q Consensus       438 ~Fg~G~r~C~  447 (479)
                      +||-|.|.|-
T Consensus        13 kfg~GsrsC~   22 (56)
T KOG3506|consen   13 KFGQGSRSCR   22 (56)
T ss_pred             ccCCCCccee
Confidence            5999999875


No 55 
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=22.36  E-value=45  Score=27.61  Aligned_cols=51  Identities=16%  Similarity=0.272  Sum_probs=32.8

Q ss_pred             CCCCCCCCCC-----CCCCCCccccCCCCCCCcch---HHHHHHHHHHHHHHHhhCceec
Q 041681          420 EKFDPSRFEA-----PPRPNTYMPFGNGVHSCPGS---ELAKLEMHIFIHHLTTTYRSLS  471 (479)
Q Consensus       420 ~~F~PeR~~~-----~~~~~~~~~Fg~G~r~C~G~---~la~~~~~~~l~~ll~~f~~~~  471 (479)
                      -+|+|+||-.     ..+....+-|+.|+=.|.|.   .=|...++.+ +.+|++..+..
T Consensus        29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGaks~~~a~~a~~~~-~~~L~~~g~~~   87 (174)
T cd04518          29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGAKSVEDLHRAVKEI-IKKLKDYGIKV   87 (174)
T ss_pred             cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEccCCHHHHHHHHHHH-HHHHHhcCCCc
Confidence            4899999854     24566789999999999986   2233333333 33456655543


No 56 
>PF14129 DUF4296:  Domain of unknown function (DUF4296)
Probab=21.85  E-value=3e+02  Score=19.52  Aligned_cols=50  Identities=12%  Similarity=0.084  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 041681          295 SDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLLDAVTREQEGILR  344 (479)
Q Consensus       295 ~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~  344 (479)
                      +.+.........++--++.++......+.+-++||+..+++.+.+..-+.
T Consensus        30 ~~~~~~~~~~~~I~kKy~Ids~~f~~S~~YY~~~p~~~~~Iy~~V~~rL~   79 (87)
T PF14129_consen   30 SSDDNMIAYYQYIFKKYGIDSAQFDSSMVYYSRNPEEYEKIYDKVIERLE   79 (87)
T ss_pred             cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            45556667778888899999999999999999999999999988765544


No 57 
>PF13893 RRM_5:  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=21.62  E-value=2.2e+02  Score=17.77  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=22.7

Q ss_pred             HHHHHHcCCeEEEeecCc--c--EEEEeChHHHHHHHH
Q 041681           92 SNRQKRYGDIFKTHILGC--P--CVMISSPEAAKIVLV  125 (479)
Q Consensus        92 ~~~~~~yG~i~~~~~~~~--~--~vvv~dp~~~~~i~~  125 (479)
                      .+...+||+|-.+.+...  .  +|-..+.+.++....
T Consensus         2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~   39 (56)
T PF13893_consen    2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIE   39 (56)
T ss_dssp             HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHH
T ss_pred             hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence            456789999998887543  2  444467888777765


No 58 
>PF05084 GRA6:  Granule antigen protein (GRA6);  InterPro: IPR008119  Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage [].  The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=21.11  E-value=2.2e+02  Score=22.80  Aligned_cols=30  Identities=20%  Similarity=0.252  Sum_probs=13.9

Q ss_pred             HHHHHHHHHhhCCCCCCCCCCCcCCccccc
Q 041681           49 LLLLLVLLQWRQPKDKRFPPGSMGWPYIGE   78 (479)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~pPgp~~~P~lG~   78 (479)
                      ..+++++++++.++..+.|.|-.+-|--|+
T Consensus       164 A~L~~~F~RR~~rrsppepsgdgG~~~~G~  193 (215)
T PF05084_consen  164 AMLTWFFLRRTGRRSPPEPSGDGGGNDAGN  193 (215)
T ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCcccc
Confidence            334444444444444444444444455543


No 59 
>PF15330 SIT:  SHP2-interacting transmembrane adaptor protein, SIT
Probab=20.65  E-value=2.2e+02  Score=21.34  Aligned_cols=9  Identities=22%  Similarity=0.095  Sum_probs=5.2

Q ss_pred             Ccccccccc
Q 041681           73 WPYIGETLK   81 (479)
Q Consensus        73 ~P~lG~~~~   81 (479)
                      -|+-||+..
T Consensus        46 ~p~YgNL~~   54 (107)
T PF15330_consen   46 DPCYGNLEL   54 (107)
T ss_pred             Ccccccccc
Confidence            366677544


No 60 
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.63  E-value=75  Score=28.34  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCC
Q 041681           42 LSFSSLLLLLLLVLLQWRQPKDKR   65 (479)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~   65 (479)
                      .++++++++++++++-|..+++++
T Consensus       265 alvllil~vvliiLYiWlyrrRK~  288 (295)
T TIGR01478       265 ALVLIILTVVLIILYIWLYRRRKK  288 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc
Confidence            334444555555566677666543


Done!