Query 041682
Match_columns 108
No_of_seqs 118 out of 638
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 09:35:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03090 auxin-responsive fami 100.0 2.4E-37 5.2E-42 217.6 9.2 84 4-87 16-103 (104)
2 PF02519 Auxin_inducible: Auxi 100.0 1.2E-35 2.7E-40 206.6 8.9 68 21-88 33-100 (100)
3 PLN03220 uncharacterized prote 100.0 2.1E-35 4.5E-40 207.9 9.1 83 4-86 13-102 (105)
4 PLN03219 uncharacterized prote 100.0 1.1E-33 2.3E-38 200.1 9.0 84 4-87 12-105 (108)
5 PRK02899 adaptor protein; Prov 85.7 0.72 1.6E-05 35.4 2.6 23 51-73 40-62 (197)
6 PF02214 BTB_2: BTB/POZ domain 83.4 1.4 2.9E-05 28.8 2.8 58 31-90 3-63 (94)
7 PRK02315 adaptor protein; Prov 82.2 1.1 2.4E-05 35.0 2.4 24 50-73 39-62 (233)
8 smart00666 PB1 PB1 domain. Pho 78.9 4 8.8E-05 25.8 3.8 53 32-89 7-70 (81)
9 cd05992 PB1 The PB1 domain is 76.5 9.3 0.0002 23.9 5.0 55 31-89 5-70 (81)
10 PF05389 MecA: Negative regula 76.4 0.82 1.8E-05 34.9 0.0 41 49-90 38-78 (220)
11 cd06410 PB1_UP2 Uncharacterize 68.8 10 0.00022 26.1 4.0 55 29-88 16-83 (97)
12 PF02100 ODC_AZ: Ornithine dec 65.4 6.5 0.00014 27.5 2.5 53 34-87 21-77 (108)
13 PF00651 BTB: BTB/POZ domain; 61.8 29 0.00063 22.2 5.0 56 30-90 14-74 (111)
14 PF11822 DUF3342: Domain of un 53.1 37 0.0008 28.4 5.3 58 36-96 12-74 (317)
15 cd06407 PB1_NLP A PB1 domain i 52.1 35 0.00076 22.6 4.2 49 31-83 5-65 (82)
16 cd04395 RhoGAP_ARHGAP21 RhoGAP 45.4 55 0.0012 24.3 4.9 43 50-92 19-61 (196)
17 PRK14189 bifunctional 5,10-met 45.1 1.1E+02 0.0023 25.0 6.8 58 24-92 31-90 (285)
18 cd06398 PB1_Joka2 The PB1 doma 43.1 66 0.0014 21.8 4.5 55 32-86 6-73 (91)
19 PRK10308 3-methyl-adenine DNA 41.9 1E+02 0.0023 24.7 6.2 62 26-87 45-121 (283)
20 PF14317 YcxB: YcxB-like prote 39.7 68 0.0015 18.3 3.8 32 24-56 27-58 (62)
21 PF11834 DUF3354: Domain of un 39.3 22 0.00048 23.2 1.7 17 50-66 26-42 (69)
22 smart00153 VHP Villin headpiec 38.8 15 0.00032 21.2 0.7 19 46-64 1-19 (36)
23 PF00564 PB1: PB1 domain; Int 38.6 59 0.0013 20.3 3.6 55 31-90 6-72 (84)
24 cd04404 RhoGAP-p50rhoGAP RhoGA 37.7 97 0.0021 22.8 5.1 44 50-94 24-68 (195)
25 PF12058 DUF3539: Protein of u 37.3 6 0.00013 27.4 -1.3 12 45-56 4-15 (88)
26 PF02209 VHP: Villin headpiece 36.9 12 0.00027 21.7 0.1 19 46-64 1-19 (36)
27 PRK14193 bifunctional 5,10-met 36.5 1.2E+02 0.0027 24.6 5.9 58 24-92 31-90 (284)
28 PRK02797 4-alpha-L-fucosyltran 36.2 1.6E+02 0.0034 24.8 6.5 65 23-90 141-227 (322)
29 PF12062 HSNSD: heparan sulfat 36.1 29 0.00064 30.6 2.4 44 22-65 91-141 (487)
30 PRK14177 bifunctional 5,10-met 34.5 1.5E+02 0.0033 24.1 6.1 57 26-93 34-92 (284)
31 PRK14172 bifunctional 5,10-met 34.3 1.4E+02 0.0031 24.2 5.9 56 26-92 33-90 (278)
32 PF08948 DUF1859: Domain of un 33.9 17 0.00037 26.3 0.5 28 25-53 86-123 (126)
33 PF05194 UreE_C: UreE urease a 33.8 65 0.0014 21.1 3.3 26 28-59 26-51 (87)
34 KOG1748 Acyl carrier protein/N 33.4 22 0.00048 26.2 1.1 31 58-88 96-128 (131)
35 COG1759 5-formaminoimidazole-4 33.1 20 0.00043 30.5 0.8 39 21-59 87-135 (361)
36 PRK14194 bifunctional 5,10-met 32.3 2.1E+02 0.0045 23.6 6.6 58 24-92 32-91 (301)
37 PRK10792 bifunctional 5,10-met 32.1 1.5E+02 0.0033 24.1 5.8 58 24-92 32-91 (285)
38 cd04373 RhoGAP_p190 RhoGAP_p19 31.7 1.3E+02 0.0028 22.2 4.9 39 54-93 21-59 (185)
39 PF03460 NIR_SIR_ferr: Nitrite 31.7 49 0.0011 20.2 2.3 56 25-88 6-67 (69)
40 PRK14188 bifunctional 5,10-met 31.3 2E+02 0.0043 23.5 6.3 58 24-92 31-90 (296)
41 PRK14179 bifunctional 5,10-met 31.1 1.9E+02 0.0042 23.5 6.2 58 24-92 31-90 (284)
42 COG4862 MecA Negative regulato 30.0 37 0.00081 27.1 1.9 26 49-74 38-63 (224)
43 PRK14190 bifunctional 5,10-met 28.8 2.1E+02 0.0045 23.3 6.0 58 24-92 31-90 (284)
44 PRK14166 bifunctional 5,10-met 28.5 2.5E+02 0.0053 22.9 6.4 58 24-92 29-88 (282)
45 PRK14186 bifunctional 5,10-met 28.3 2.1E+02 0.0045 23.5 6.0 58 24-92 31-90 (297)
46 cd01783 DAGK_delta_RA Ubiquiti 27.6 1.2E+02 0.0026 21.2 3.9 51 26-76 2-53 (97)
47 PF07429 Glyco_transf_56: 4-al 27.3 2.3E+02 0.0049 24.2 6.1 65 23-90 180-266 (360)
48 cd01406 SIR2-like Sir2-like: P 26.9 73 0.0016 24.0 3.0 36 27-68 1-36 (242)
49 PRK13277 5-formaminoimidazole- 26.8 20 0.00043 30.4 -0.2 23 21-43 87-111 (366)
50 PRK14184 bifunctional 5,10-met 26.8 2.4E+02 0.0052 23.0 6.1 59 24-93 30-90 (286)
51 PRK14182 bifunctional 5,10-met 26.4 2.8E+02 0.006 22.6 6.4 59 23-92 28-88 (282)
52 TIGR03793 TOMM_pelo TOMM prope 26.3 96 0.0021 20.5 3.1 27 47-73 14-44 (77)
53 PRK14192 bifunctional 5,10-met 26.3 2.3E+02 0.0051 22.7 5.9 56 24-90 32-89 (283)
54 PF07369 DUF1488: Protein of u 26.0 92 0.002 19.9 2.9 20 28-47 18-37 (83)
55 PRK14170 bifunctional 5,10-met 25.8 2.8E+02 0.0061 22.6 6.3 58 24-92 30-89 (284)
56 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 25.4 2E+02 0.0044 21.7 5.2 44 50-93 10-53 (206)
57 smart00225 BTB Broad-Complex, 25.3 1.5E+02 0.0032 17.2 4.1 56 31-91 4-62 (90)
58 PRK14173 bifunctional 5,10-met 25.0 3.3E+02 0.007 22.3 6.5 57 25-92 29-87 (287)
59 cd04372 RhoGAP_chimaerin RhoGA 24.8 1.9E+02 0.004 21.4 4.8 40 50-90 17-57 (194)
60 PRK14176 bifunctional 5,10-met 24.3 3.7E+02 0.008 22.0 6.7 58 24-92 37-96 (287)
61 cd04407 RhoGAP_myosin_IXB RhoG 24.1 1.7E+02 0.0036 21.8 4.4 39 52-91 19-57 (186)
62 PF04304 DUF454: Protein of un 24.0 56 0.0012 20.4 1.6 22 46-67 5-26 (71)
63 PRK14171 bifunctional 5,10-met 24.0 3.4E+02 0.0074 22.2 6.5 58 24-92 31-90 (288)
64 PLN02897 tetrahydrofolate dehy 23.9 2.5E+02 0.0053 23.7 5.8 58 24-92 85-144 (345)
65 cd04393 RhoGAP_FAM13A1a RhoGAP 23.3 2.5E+02 0.0055 20.6 5.2 42 52-94 24-65 (189)
66 KOG4209 Splicing factor RNPS1, 23.2 27 0.0006 27.4 0.0 44 36-79 95-139 (231)
67 PF11876 DUF3396: Protein of u 23.1 69 0.0015 24.6 2.2 37 37-73 24-63 (208)
68 cd04403 RhoGAP_ARHGAP27_15_12_ 22.6 2.5E+02 0.0054 20.6 5.0 43 50-92 17-59 (187)
69 PRK14169 bifunctional 5,10-met 22.3 3.5E+02 0.0075 22.0 6.2 58 24-92 29-88 (282)
70 PRK14174 bifunctional 5,10-met 22.2 3.2E+02 0.007 22.3 6.0 58 24-92 30-89 (295)
71 PF00763 THF_DHG_CYH: Tetrahyd 22.0 1.3E+02 0.0028 20.8 3.2 60 23-93 27-88 (117)
72 PRK14191 bifunctional 5,10-met 21.9 3.5E+02 0.0075 22.1 6.1 58 24-92 30-89 (285)
73 cd04381 RhoGap_RalBP1 RhoGap_R 21.9 2.6E+02 0.0056 20.5 5.0 44 50-94 21-65 (182)
74 PRK07735 NADH dehydrogenase su 21.7 1.7E+02 0.0036 25.7 4.4 45 46-90 272-326 (430)
75 PRK14167 bifunctional 5,10-met 21.3 4E+02 0.0087 21.8 6.4 58 24-92 30-89 (297)
76 PRK14187 bifunctional 5,10-met 21.3 4E+02 0.0088 21.8 6.4 57 24-91 31-89 (294)
77 cd06401 PB1_TFG The PB1 domain 20.9 1.5E+02 0.0032 20.2 3.2 28 34-64 8-35 (81)
78 PLN02616 tetrahydrofolate dehy 20.8 3.7E+02 0.008 22.9 6.2 58 24-92 102-161 (364)
79 PLN02752 [acyl-carrier protein 20.7 78 0.0017 25.3 2.2 41 26-66 38-78 (343)
80 PRK14175 bifunctional 5,10-met 20.7 3.9E+02 0.0084 21.7 6.2 57 24-91 31-89 (286)
81 cd04382 RhoGAP_MgcRacGAP RhoGA 20.6 2.7E+02 0.0058 20.8 4.9 42 50-92 18-60 (193)
No 1
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=217.57 Aligned_cols=84 Identities=31% Similarity=0.503 Sum_probs=77.0
Q ss_pred HHHHHHhhhccccccc----ccccCCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEecCCHHH
Q 041682 4 LKIRERLISLVTKLKL----KRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLM 79 (108)
Q Consensus 4 ~~~~~R~~~~~~~~~s----~~~~vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IPC~~~~ 79 (108)
+++++||+|.+++++. .+.+||+||||||||++++||+||++|||||+|++||++|||||||+|+|+|+|||+++.
T Consensus 16 kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~ 95 (104)
T PLN03090 16 KQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVV 95 (104)
T ss_pred HHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHH
Confidence 4566789888876532 577899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 041682 80 FQWILNLA 87 (108)
Q Consensus 80 Fe~vl~~i 87 (108)
|++++|+|
T Consensus 96 Fe~ll~~i 103 (104)
T PLN03090 96 FRSLTSMI 103 (104)
T ss_pred HHHHHHHh
Confidence 99999998
No 2
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=1.2e-35 Score=206.65 Aligned_cols=68 Identities=37% Similarity=0.735 Sum_probs=65.9
Q ss_pred cccCCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHh
Q 041682 21 RRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLAS 88 (108)
Q Consensus 21 ~~~vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~ 88 (108)
..++|+||||||||++++||+||++|||||+|++||++|||||||+++|+|+|||+++.|++++|+|+
T Consensus 33 ~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 33 ESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred cCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999999999985
No 3
>PLN03220 uncharacterized protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=207.92 Aligned_cols=83 Identities=24% Similarity=0.402 Sum_probs=72.5
Q ss_pred HHHHHHhhhccccc--ccccccCCCceEEEEeec----CCeEEEEeccccCChHHHHHHHhhhhcCCCCC-CCCeEecCC
Q 041682 4 LKIRERLISLVTKL--KLKRRKVPKGFRVMYIGE----ARQKFVVPIECLSSVMFRALLNQFEAKDKVDG-PNPIVLPCS 76 (108)
Q Consensus 4 ~~~~~R~~~~~~~~--~s~~~~vpkG~~aVyVG~----e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~-~G~L~IPC~ 76 (108)
++|.+|++.+.+.. ++.+.+|||||||||||+ +++||+||++|||||.|++||++|||||||+| +|+|+|||+
T Consensus 13 k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd 92 (105)
T PLN03220 13 KQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCR 92 (105)
T ss_pred HHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCC
Confidence 45667888555433 236779999999999997 58999999999999999999999999999999 599999999
Q ss_pred HHHHHHHHHH
Q 041682 77 PLMFQWILNL 86 (108)
Q Consensus 77 ~~~Fe~vl~~ 86 (108)
++.|++++..
T Consensus 93 ~~~F~~ll~s 102 (105)
T PLN03220 93 EEVFLDLIAS 102 (105)
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 4
>PLN03219 uncharacterized protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=200.11 Aligned_cols=84 Identities=26% Similarity=0.428 Sum_probs=71.7
Q ss_pred HHHHHHhhhcccccc-------cccccCCCceEEEEeec--CCeEEEEeccccCChHHHHHHHhhhhcCCCCC-CCCeEe
Q 041682 4 LKIRERLISLVTKLK-------LKRRKVPKGFRVMYIGE--ARQKFVVPIECLSSVMFRALLNQFEAKDKVDG-PNPIVL 73 (108)
Q Consensus 4 ~~~~~R~~~~~~~~~-------s~~~~vpkG~~aVyVG~--e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~-~G~L~I 73 (108)
++||+-.+-..+.++ +.+.+|||||+|||||+ |++||+||++|||||+|++||++|||||||+| +|+|+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~I 91 (108)
T PLN03219 12 KQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTI 91 (108)
T ss_pred HHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEE
Confidence 567765554444432 24578999999999996 58999999999999999999999999999998 599999
Q ss_pred cCCHHHHHHHHHHH
Q 041682 74 PCSPLMFQWILNLA 87 (108)
Q Consensus 74 PC~~~~Fe~vl~~i 87 (108)
||+++.|+++++.-
T Consensus 92 PCd~~~F~~ll~~~ 105 (108)
T PLN03219 92 PCREESFLHLITSH 105 (108)
T ss_pred eCCHHHHHHHHHhh
Confidence 99999999999854
No 5
>PRK02899 adaptor protein; Provisional
Probab=85.73 E-value=0.72 Score=35.37 Aligned_cols=23 Identities=17% Similarity=0.479 Sum_probs=20.5
Q ss_pred HHHHHHHhhhhcCCCCCCCCeEe
Q 041682 51 MFRALLNQFEAKDKVDGPNPIVL 73 (108)
Q Consensus 51 ~F~~LL~~aeeEfG~~~~G~L~I 73 (108)
+|.++|++|..|+||..+|||+|
T Consensus 40 lF~~mm~Ea~~e~~F~~~~pl~~ 62 (197)
T PRK02899 40 LFRDMMQEANKELGFEADGPIAV 62 (197)
T ss_pred HHHHHHHHhhhccCcccCCeEEE
Confidence 47777999999999999999976
No 6
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=83.40 E-value=1.4 Score=28.82 Aligned_cols=58 Identities=19% Similarity=0.322 Sum_probs=43.4
Q ss_pred EEeecCCeEEEEeccccC-C--hHHHHHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHhcC
Q 041682 31 MYIGEARQKFVVPIECLS-S--VMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSK 90 (108)
Q Consensus 31 VyVG~e~~RfvVp~~yL~-h--p~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~ 90 (108)
+=|| .++|.++.+-|. + ..|..+++.......-+.+|.+-|-++...|++|+..++.+
T Consensus 3 lNVG--G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~ 63 (94)
T PF02214_consen 3 LNVG--GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG 63 (94)
T ss_dssp EEET--TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred EEEC--CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence 3455 479999998876 4 47888888653222334569999999999999999999985
No 7
>PRK02315 adaptor protein; Provisional
Probab=82.16 E-value=1.1 Score=35.00 Aligned_cols=24 Identities=13% Similarity=0.477 Sum_probs=21.9
Q ss_pred hHHHHHHHhhhhcCCCCCCCCeEe
Q 041682 50 VMFRALLNQFEAKDKVDGPNPIVL 73 (108)
Q Consensus 50 p~F~~LL~~aeeEfG~~~~G~L~I 73 (108)
-+|.++|++|..|+||..+|||+|
T Consensus 39 ~fF~~mm~Ea~~e~~F~~~~pl~~ 62 (233)
T PRK02315 39 EFFYSMMDEVDEEDDFADEGPLWF 62 (233)
T ss_pred HHHHHHHHHhccccCcccCCeEEE
Confidence 469999999999999999999976
No 8
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=78.89 E-value=4 Score=25.79 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=40.0
Q ss_pred EeecCCeEEEEeccccCChHHHHHHHhhhhcCCCC----------CCC-CeEecCCHHHHHHHHHHHhc
Q 041682 32 YIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVD----------GPN-PIVLPCSPLMFQWILNLASS 89 (108)
Q Consensus 32 yVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~----------~~G-~L~IPC~~~~Fe~vl~~i~~ 89 (108)
+-|++.+||.+|- ...|.+|..+..+.|+.. .+| .++|.++. .+..++.....
T Consensus 7 ~~~~~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~~~~ 70 (81)
T smart00666 7 RYGGETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEEYDS 70 (81)
T ss_pred EECCEEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHHHHH
Confidence 3477899999985 778999999999999874 234 67888865 56666666654
No 9
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=76.54 E-value=9.3 Score=23.87 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=40.9
Q ss_pred EEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCC----------CCCC-eEecCCHHHHHHHHHHHhc
Q 041682 31 MYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVD----------GPNP-IVLPCSPLMFQWILNLASS 89 (108)
Q Consensus 31 VyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~----------~~G~-L~IPC~~~~Fe~vl~~i~~ 89 (108)
++-+++..||.+|- .++.|.+|..+..+.|+.. .+|- ++|-++ +.++..+.....
T Consensus 5 ~~~~~~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~~~ 70 (81)
T cd05992 5 VKYGGEIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEARR 70 (81)
T ss_pred EEecCCCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHHhh
Confidence 44556899999997 7889999999999999875 2343 455554 677888777764
No 10
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=76.44 E-value=0.82 Score=34.90 Aligned_cols=41 Identities=12% Similarity=0.288 Sum_probs=0.0
Q ss_pred ChHHHHHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHhcC
Q 041682 49 SVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSK 90 (108)
Q Consensus 49 hp~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~ 90 (108)
+-.|.++|++|.+|+||..+|||++-=-+.- +.+.=.|.+.
T Consensus 38 e~fF~~ileea~~e~~F~~~~~l~~qv~p~~-~gl~l~ITk~ 78 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFENDGPLTFQVMPLP-DGLELIITKV 78 (220)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHhccccCcccCCeEEEEEEECC-CCEEEEEEec
Confidence 4469999999999999999999987333333 3333334433
No 11
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=68.77 E-value=10 Score=26.13 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=38.2
Q ss_pred EEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCC-------------CCCeEecCCHHHHHHHHHHHh
Q 041682 29 RVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDG-------------PNPIVLPCSPLMFQWILNLAS 88 (108)
Q Consensus 29 ~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~-------------~G~L~IPC~~~~Fe~vl~~i~ 88 (108)
-.=|||++.+-..|+-+ -.|.+|..+..+.++... ++-+.|.||.+ ..+++...+
T Consensus 16 ~l~Y~GG~tr~i~V~r~----~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeD-l~~M~~e~~ 83 (97)
T cd06410 16 QLRYVGGETRIVSVDRS----ISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDED-LKNMMEEYD 83 (97)
T ss_pred CEEEcCCceEEEEEcCC----CCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHH-HHHHHHhhc
Confidence 34799999888888866 467778888777776665 35677888874 344444443
No 12
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=65.36 E-value=6.5 Score=27.49 Aligned_cols=53 Identities=28% Similarity=0.229 Sum_probs=26.6
Q ss_pred ecCCeEEE-Eecccc---CChHHHHHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHH
Q 041682 34 GEARQKFV-VPIECL---SSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLA 87 (108)
Q Consensus 34 G~e~~Rfv-Vp~~yL---~hp~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i 87 (108)
|+++.=|| +|-..+ +-.-|.+||+.|||.+|.++ -.+.++=+-.....++..+
T Consensus 21 ~~~~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~-vvic~~k~~~d~~~Llr~l 77 (108)
T PF02100_consen 21 GDERTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH-VVICLDKNRPDRASLLRTL 77 (108)
T ss_dssp --TTEEEEE-SS---SS--SHHHHHHHHHHHHHH-----EEEEE---SS-HHHHHHHH
T ss_pred ccCCEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE-EEEEEECCchhHHHhhhhc
Confidence 33455555 455444 44569999999999999776 5677775555555555544
No 13
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=61.85 E-value=29 Score=22.16 Aligned_cols=56 Identities=29% Similarity=0.407 Sum_probs=40.0
Q ss_pred EEEeecCCeEEEEecccc--CChHHHHHHHhhhhcCCCCCCC--CeEec-CCHHHHHHHHHHHhcC
Q 041682 30 VMYIGEARQKFVVPIECL--SSVMFRALLNQFEAKDKVDGPN--PIVLP-CSPLMFQWILNLASSK 90 (108)
Q Consensus 30 aVyVG~e~~RfvVp~~yL--~hp~F~~LL~~aeeEfG~~~~G--~L~IP-C~~~~Fe~vl~~i~~~ 90 (108)
.+.|| +.++|-+.-..| ..|.|+.+++.. +....+ .+.++ |+...|+.++..+-.+
T Consensus 14 ~i~v~-d~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~ 74 (111)
T PF00651_consen 14 TIRVG-DGKTFYVHKNILAARSPYFRNLFEGS----KFKESTVPEISLPDVSPEAFEAFLEYMYTG 74 (111)
T ss_dssp EEEET-TTEEEEE-HHHHHHHBHHHHHHHTTT----TSTTSSEEEEEETTSCHHHHHHHHHHHHHS
T ss_pred EEEEC-CCEEEeechhhhhccchhhhhccccc----ccccccccccccccccccccccccccccCC
Confidence 45555 378888888877 679999999988 222333 46555 7899999999988644
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=53.12 E-value=37 Score=28.35 Aligned_cols=58 Identities=19% Similarity=0.445 Sum_probs=43.8
Q ss_pred CCeEEEEecccc--CChHHHHHHHh---hhhcCCCCCCCCeEecCCHHHHHHHHHHHhcCCCCCCC
Q 041682 36 ARQKFVVPIECL--SSVMFRALLNQ---FEAKDKVDGPNPIVLPCSPLMFQWILNLASSKSPADHP 96 (108)
Q Consensus 36 e~~RfvVp~~yL--~hp~F~~LL~~---aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~~~~~~~ 96 (108)
..+=|..|.+.| ....|++.|.. ..++. .+-.|.+-||+..|++++.-+.+..+.=..
T Consensus 12 ~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~---~~idisVhCDv~iF~WLm~yv~~~~p~l~~ 74 (317)
T PF11822_consen 12 EKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRW---EEIDISVHCDVHIFEWLMRYVKGEPPSLTP 74 (317)
T ss_pred cceeeeccHHHHHHhhHHHHHHHhhcccccCcC---CCcceEEecChhHHHHHHHHhhcCCCcCCc
Confidence 467799999988 45679999965 33222 235688999999999999999986665444
No 15
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=52.13 E-value=35 Score=22.64 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=35.3
Q ss_pred EEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCC------------CCCeEecCCHHHHHHH
Q 041682 31 MYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDG------------PNPIVLPCSPLMFQWI 83 (108)
Q Consensus 31 VyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~------------~G~L~IPC~~~~Fe~v 83 (108)
+..|+|..||.+|. ..-|++|-++-.+-|+.+. ....+|.|+.+.=+.+
T Consensus 5 ~~~~~d~~r~~l~~----~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai 65 (82)
T cd06407 5 ATYGEEKIRFRLPP----SWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECI 65 (82)
T ss_pred EEeCCeEEEEEcCC----CCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHH
Confidence 34477899999885 3469999999998887753 2457788887755443
No 16
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=45.44 E-value=55 Score=24.28 Aligned_cols=43 Identities=2% Similarity=-0.070 Sum_probs=35.5
Q ss_pred hHHHHHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHhcCCC
Q 041682 50 VMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSKSP 92 (108)
Q Consensus 50 p~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~~~ 92 (108)
|.|.+..-..-++.|.+.+|.-++|.+...-+.+...++++..
T Consensus 19 P~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~ 61 (196)
T cd04395 19 PLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGF 61 (196)
T ss_pred ChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCC
Confidence 5555555556678899999999999999999999999998764
No 17
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.08 E-value=1.1e+02 Score=24.99 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=42.3
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. ..-....--.++.++.|+..+ .+.+| ++.+.|...+..+..+..
T Consensus 31 ~~p~Laii~vg~d~----------as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~~~~~l~~~I~~lN~d~~ 90 (285)
T PRK14189 31 HQPGLAVILVGDNP----------ASQVYVRNKVKACEDNGFHSL-KDRYPADLSEAELLARIDELNRDPK 90 (285)
T ss_pred CCCeEEEEEeCCCc----------hHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHcCCCC
Confidence 44588899999653 344556677788888998763 56777 778888888888876553
No 18
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=43.09 E-value=66 Score=21.79 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=38.3
Q ss_pred EeecCCeEEEEeccc-cCChHHHHHHHhhhhcCCCCC-----------C-CCeEecCCHHHHHHHHHH
Q 041682 32 YIGEARQKFVVPIEC-LSSVMFRALLNQFEAKDKVDG-----------P-NPIVLPCSPLMFQWILNL 86 (108)
Q Consensus 32 yVG~e~~RfvVp~~y-L~hp~F~~LL~~aeeEfG~~~-----------~-G~L~IPC~~~~Fe~vl~~ 86 (108)
.-|++.+||-+|..- -.+..|..|.++.++-|.... + ..++|.|+.+.-+-+-..
T Consensus 6 ~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~ 73 (91)
T cd06398 6 KYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYF 73 (91)
T ss_pred EeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHH
Confidence 337789999999641 114478888888888877653 2 357888988776665543
No 19
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=41.90 E-value=1e+02 Score=24.66 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=42.2
Q ss_pred CceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCC---------------CCeEecCCHHHHHHHHHHH
Q 041682 26 KGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGP---------------NPIVLPCSPLMFQWILNLA 87 (108)
Q Consensus 26 kG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~---------------G~L~IPC~~~~Fe~vl~~i 87 (108)
.|.|.|.-.++...+.|.++.-.-+....++.....-||.+.+ -+|+||...+.||.+++.|
T Consensus 45 ~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~aI 121 (283)
T PRK10308 45 RGVVTVIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRAI 121 (283)
T ss_pred cEEEEEEEcCCCceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHH
Confidence 4555555544555666666653345556677777777777654 3689999999999888876
No 20
>PF14317 YcxB: YcxB-like protein
Probab=39.71 E-value=68 Score=18.32 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=23.6
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHH
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALL 56 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL 56 (108)
.-+.++-+|++ +..-++||-+.++.-...++.
T Consensus 27 e~~~~~~l~~~-~~~~~~iPk~~f~~~e~~~f~ 58 (62)
T PF14317_consen 27 ETKDYFYLYLG-KNQAFIIPKRAFSEEEKEEFR 58 (62)
T ss_pred EeCCEEEEEEC-CCeEEEEEHHHCCHhHHHHHH
Confidence 35678888998 559999999999844444443
No 21
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=39.33 E-value=22 Score=23.19 Aligned_cols=17 Identities=18% Similarity=0.024 Sum_probs=15.3
Q ss_pred hHHHHHHHhhhhcCCCC
Q 041682 50 VMFRALLNQFEAKDKVD 66 (108)
Q Consensus 50 p~F~~LL~~aeeEfG~~ 66 (108)
-.+++||+.|++.||+.
T Consensus 26 ~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS 42 (69)
T ss_pred ccHHHHHHHHHHHhCCC
Confidence 36999999999999985
No 22
>smart00153 VHP Villin headpiece domain.
Probab=38.83 E-value=15 Score=21.23 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=16.6
Q ss_pred ccCChHHHHHHHhhhhcCC
Q 041682 46 CLSSVMFRALLNQFEAKDK 64 (108)
Q Consensus 46 yL~hp~F~~LL~~aeeEfG 64 (108)
||+.-.|+..+.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7888999999999998873
No 23
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=38.62 E-value=59 Score=20.25 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=36.1
Q ss_pred EEeecCCeE-EEEeccccCChHHHHHHHhhhhcCCCC----------CCC-CeEecCCHHHHHHHHHHHhcC
Q 041682 31 MYIGEARQK-FVVPIECLSSVMFRALLNQFEAKDKVD----------GPN-PIVLPCSPLMFQWILNLASSK 90 (108)
Q Consensus 31 VyVG~e~~R-fvVp~~yL~hp~F~~LL~~aeeEfG~~----------~~G-~L~IPC~~~~Fe~vl~~i~~~ 90 (108)
++-+++.+| +.+| +.+.|.+|..+.++.||.. .+| .++|.++ +.++..+....+.
T Consensus 6 ~~~~~~~~~~~~~~----~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd-~Dl~~a~~~~~~~ 72 (84)
T PF00564_consen 6 VRYGGDIRRIISLP----SDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSD-EDLQEAIEQAKES 72 (84)
T ss_dssp EEETTEEEEEEEEC----STSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSH-HHHHHHHHHHHHC
T ss_pred EEECCeeEEEEEcC----CCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCH-HHHHHHHHHHHhc
Confidence 344555555 4444 5679999999999999983 345 4556555 4566666666544
No 24
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=37.73 E-value=97 Score=22.85 Aligned_cols=44 Identities=7% Similarity=0.022 Sum_probs=34.2
Q ss_pred hHHH-HHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHhcCCCCC
Q 041682 50 VMFR-ALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSKSPAD 94 (108)
Q Consensus 50 p~F~-~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~~~~~ 94 (108)
|.+. .+++-.++ .|.+.+|..++|.+...-+.+...++++...+
T Consensus 24 P~il~~~i~~l~~-~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~ 68 (195)
T cd04404 24 PPVVRETVEYLQA-HALTTEGIFRRSANTQVVKEVQQKYNMGEPVD 68 (195)
T ss_pred ChHHHHHHHHHHH-cCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCC
Confidence 4444 44555544 89999999999999999999999999876443
No 25
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=37.25 E-value=6 Score=27.43 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=8.4
Q ss_pred cccCChHHHHHH
Q 041682 45 ECLSSVMFRALL 56 (108)
Q Consensus 45 ~yL~hp~F~~LL 56 (108)
.|||||.|.-|-
T Consensus 4 ~YLNHPtFGlLy 15 (88)
T PF12058_consen 4 TYLNHPTFGLLY 15 (88)
T ss_dssp -EEEETTTEEEE
T ss_pred ccccCCccchhe
Confidence 589999986543
No 26
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=36.88 E-value=12 Score=21.65 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=14.8
Q ss_pred ccCChHHHHHHHhhhhcCC
Q 041682 46 CLSSVMFRALLNQFEAKDK 64 (108)
Q Consensus 46 yL~hp~F~~LL~~aeeEfG 64 (108)
||+.-.|++++.++.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7888999999999998873
No 27
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.46 E-value=1.2e+02 Score=24.65 Aligned_cols=58 Identities=10% Similarity=0.139 Sum_probs=41.6
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|+||++. ..-.....-.++.+++|++.+ .+.+| ++.+.|...+..+..+..
T Consensus 31 ~~P~LaiI~vg~d~----------as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~t~~el~~~I~~lN~D~~ 90 (284)
T PRK14193 31 ITPGLGTVLVGDDP----------GSQAYVRGKHRDCAEVGITSI-RRDLPADATQEELNAVIDELNADPA 90 (284)
T ss_pred CCceEEEEEeCCCH----------HHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 44588889999652 233456677788889998763 56677 888888888888876643
No 28
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=36.16 E-value=1.6e+02 Score=24.82 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=44.0
Q ss_pred cCCCceEEEEeec--------------------CCeEEEEeccc--cCChHHHHHHHhhhhcCCCCCCCCeEecCCHHHH
Q 041682 23 KVPKGFRVMYIGE--------------------ARQKFVVPIEC--LSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMF 80 (108)
Q Consensus 23 ~vpkG~~aVyVG~--------------------e~~RfvVp~~y--L~hp~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 80 (108)
..++|.+.|.||. +.-|+.||++| =|.--.++..+.+.+-||-+ -++|-=+--.|
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~---~~~~L~e~l~f 217 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAE---NFQILTEKLPF 217 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcc---cEEehhhhCCH
Confidence 3467889999983 35699999999 45556667777777788743 34444455556
Q ss_pred HHHHHHHhcC
Q 041682 81 QWILNLASSK 90 (108)
Q Consensus 81 e~vl~~i~~~ 90 (108)
+..+.++++.
T Consensus 218 ~eYl~lL~~~ 227 (322)
T PRK02797 218 DDYLALLRQC 227 (322)
T ss_pred HHHHHHHHhC
Confidence 6666666543
No 29
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=36.08 E-value=29 Score=30.60 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=37.4
Q ss_pred ccCC-CceEEEEeecCCeEEEEec-----cccCChH-HHHHHHhhhhcCCC
Q 041682 22 RKVP-KGFRVMYIGEARQKFVVPI-----ECLSSVM-FRALLNQFEAKDKV 65 (108)
Q Consensus 22 ~~vp-kG~~aVyVG~e~~RfvVp~-----~yL~hp~-F~~LL~~aeeEfG~ 65 (108)
..+| ||.+|+++-.++.||-|-| .|+|-+. -++||++-=.|||-
T Consensus 91 ei~~~kg~lP~LT~~~kGRy~lII~ENl~kYlnld~wNR~LLdkYC~ey~V 141 (487)
T PF12062_consen 91 EIASGKGDLPVLTDNDKGRYSLIIFENLLKYLNLDSWNRELLDKYCREYGV 141 (487)
T ss_pred EEccCCCCCCccccCCCCcEEEEEehhHHHHcCChHHHHHHHHHHhHccCc
Confidence 3455 6899999977788998887 7999999 89999999999864
No 30
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.45 E-value=1.5e+02 Score=24.14 Aligned_cols=57 Identities=9% Similarity=0.065 Sum_probs=40.3
Q ss_pred CceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCCC
Q 041682 26 KGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSPA 93 (108)
Q Consensus 26 kG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~~ 93 (108)
.+...|.||++. ..-....--.++.+++|+..+ .+.+| |+.+.|...+..+..+..-
T Consensus 34 P~Laii~vg~d~----------as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~s~~el~~~I~~lN~D~~V 92 (284)
T PRK14177 34 PKLATILVGNNP----------ASETYVSMKVKACHKVGMGSE-MIRLKEQTTTEELLGVIDKLNLDPNV 92 (284)
T ss_pred CeEEEEEeCCCh----------hHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 378888999752 123445566778889998763 56666 7888898888888766543
No 31
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.28 E-value=1.4e+02 Score=24.21 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=38.9
Q ss_pred CceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 26 KGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 26 kG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+-..|.||++ |. .......-.++.++.|...+ .+.+| |+.+.+...+..++.+..
T Consensus 33 P~Laii~vg~d------~a----s~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~~~el~~~I~~lN~d~~ 90 (278)
T PRK14172 33 PKIASILVGND------GG----SIYYMNNQEKVANSLGIDFK-KIKLDESISEEDLINEIEELNKDNN 90 (278)
T ss_pred ceEEEEEeCCC------HH----HHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 37788899975 21 23344566788889998763 56777 888888888887776543
No 32
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=33.87 E-value=17 Score=26.33 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=7.6
Q ss_pred CCceEEEEeecCCeEEE----------EeccccCChHHH
Q 041682 25 PKGFRVMYIGEARQKFV----------VPIECLSSVMFR 53 (108)
Q Consensus 25 pkG~~aVyVG~e~~Rfv----------Vp~~yL~hp~F~ 53 (108)
..||+|+.|- .+-.|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~-~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 86 KQGYFPLLVP-GRAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp --SS--EEE---SSSSEEEEEEEESS----S--------
T ss_pred Ccccceeecc-chhhhhhhhccCCCcceeeEEEeceeee
Confidence 5799999995 233444 688899988754
No 33
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=33.77 E-value=65 Score=21.12 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=17.8
Q ss_pred eEEEEeecCCeEEEEeccccCChHHHHHHHhh
Q 041682 28 FRVMYIGEARQKFVVPIECLSSVMFRALLNQF 59 (108)
Q Consensus 28 ~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~a 59 (108)
|+|++++++ +..|| ..+.+.+||++.
T Consensus 26 H~p~~i~~~--~l~v~----~d~~l~~~L~~l 51 (87)
T PF05194_consen 26 HWPLFIEED--ELYVP----YDHVLEELLRKL 51 (87)
T ss_dssp T--EEEETT--EEEEE------HHHHHHHHHT
T ss_pred ccceEEcCC--EEEec----CcHHHHHHHHHC
Confidence 789999976 78888 677778888875
No 34
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.45 E-value=22 Score=26.19 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=23.1
Q ss_pred hhhhcCCCCCC--CCeEecCCHHHHHHHHHHHh
Q 041682 58 QFEAKDKVDGP--NPIVLPCSPLMFQWILNLAS 88 (108)
Q Consensus 58 ~aeeEfG~~~~--G~L~IPC~~~~Fe~vl~~i~ 88 (108)
-.||||||+.+ -.=.|-|-.+.+++|....+
T Consensus 96 AlEEEFgiEIpd~dAdki~t~~da~~yI~~~~d 128 (131)
T KOG1748|consen 96 ALEEEFGIEIPDEDADKIKTVRDAADYIADKPD 128 (131)
T ss_pred hhHHHhCCccCcchhhhhCCHHHHHHHHHhccc
Confidence 34899999964 56778888888888766543
No 35
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=33.09 E-value=20 Score=30.48 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=25.4
Q ss_pred cccCCCceEEEEeecC--CeEEEEecc-------cc-CChHHHHHHHhh
Q 041682 21 RRKVPKGFRVMYIGEA--RQKFVVPIE-------CL-SSVMFRALLNQF 59 (108)
Q Consensus 21 ~~~vpkG~~aVyVG~e--~~RfvVp~~-------yL-~hp~F~~LL~~a 59 (108)
..-+|.|.|++|||-| -..|.||+= += ..-.-..||++|
T Consensus 87 ~I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR~lLrwE~~~~~~~~lLekA 135 (361)
T COG1759 87 AIFIPHGSFVAYVGYDGIENEFEVPMFGNRELLRWEEDRKLEYKLLEKA 135 (361)
T ss_pred eEEecCCceEEEecchhhhhcccCcccccHhHhhhhcchhhHHHHHHHc
Confidence 3568999999999954 355777741 00 122345788877
No 36
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.26 E-value=2.1e+02 Score=23.56 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=41.1
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. ..-.....-.++.|+.|.... .+.+| ++.+.+...+..+..+..
T Consensus 32 ~~P~LaiI~vg~d~----------as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~t~~~l~~~I~~lN~D~~ 91 (301)
T PRK14194 32 IEPALAVILVGNDP----------ASQVYVRNKILRAEEAGIRSL-EHRLPADTSQARLLALIAELNADPS 91 (301)
T ss_pred CCCeEEEEEeCCCh----------hHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHcCCCC
Confidence 45588899999652 233455677788889998763 55666 778888888888776653
No 37
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.07 E-value=1.5e+02 Score=24.14 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=41.0
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. ..-....--.++.++.|++.. .+.+| ++.++|...+..+..+.+
T Consensus 32 ~~P~Laii~vg~d~----------as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~s~~el~~~I~~lN~d~~ 91 (285)
T PRK10792 32 RAPGLAVVLVGSDP----------ASQVYVASKRKACEEVGFVSR-SYDLPETTSEAELLALIDELNADPT 91 (285)
T ss_pred CCceEEEEEeCCCH----------HHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 34478888899652 133455667778889998853 56676 888889888888876554
No 38
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=31.72 E-value=1.3e+02 Score=22.24 Aligned_cols=39 Identities=5% Similarity=-0.026 Sum_probs=31.1
Q ss_pred HHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHhcCCCC
Q 041682 54 ALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSKSPA 93 (108)
Q Consensus 54 ~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~~~~ 93 (108)
.+++-.++ .|.+.+|..++|.+....+++...++++...
T Consensus 21 ~~i~~l~~-~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~ 59 (185)
T cd04373 21 KCVEFIEA-TGLETEGIYRVSGNKTHLDSLQKQFDQDHNL 59 (185)
T ss_pred HHHHHHHH-cCCCCCCeeecCCcHHHHHHHHHHHhcCCCC
Confidence 44444444 8999999999999999999999999876543
No 39
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=31.69 E-value=49 Score=20.18 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=35.1
Q ss_pred CCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCC-----CCCCCCeEec-CCHHHHHHHHHHHh
Q 041682 25 PKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDK-----VDGPNPIVLP-CSPLMFQWILNLAS 88 (108)
Q Consensus 25 pkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG-----~~~~G~L~IP-C~~~~Fe~vl~~i~ 88 (108)
+.|++.|.+. +|..-++-..++.|.+-| ++|| +.....|.|+ -+.+....+...++
T Consensus 6 ~~g~~~v~~~-------~~~G~i~~~~l~~la~ia-~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~ 67 (69)
T PF03460_consen 6 GDGFYMVRIR-------IPGGRISAEQLRALAEIA-EKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELK 67 (69)
T ss_dssp STTEEEEEEB--------GGGEEEHHHHHHHHHHH-HHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHH
T ss_pred CCeEEEEEEe-------CCCEEECHHHHHHHHHHH-HHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHH
Confidence 4577777765 777777666666666655 5676 3344556666 66666666666554
No 40
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.28 E-value=2e+02 Score=23.49 Aligned_cols=58 Identities=16% Similarity=0.195 Sum_probs=41.5
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. ..-.....-.++.+++|++.+ .+.+| ++.++|...+..+..+..
T Consensus 31 ~~p~La~i~vg~~~----------~s~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~~~el~~~i~~lN~d~~ 90 (296)
T PRK14188 31 VTPGLAVVLVGEDP----------ASQVYVRSKGKQTKEAGMASF-EHKLPADTSQAELLALIARLNADPA 90 (296)
T ss_pred CCCeEEEEEeCCCh----------hHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 45588899999652 233455667788889998853 55666 888888888888876643
No 41
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.12 E-value=1.9e+02 Score=23.48 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=41.7
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. ..-....--.++.++.|+..+ .+.+| ++.+.|...+..+..+..
T Consensus 31 ~~P~Laii~vg~d~----------as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~~~~~l~~~I~~lN~d~~ 90 (284)
T PRK14179 31 IVPGLVVILVGDNP----------ASQVYVRNKERSALAAGFKSE-VVRLPETISQEELLDLIERYNQDPT 90 (284)
T ss_pred CCceEEEEEeCCCh----------hHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 34478889999652 233455666788889998864 66777 788888888888876654
No 42
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=30.03 E-value=37 Score=27.13 Aligned_cols=26 Identities=8% Similarity=0.423 Sum_probs=23.3
Q ss_pred ChHHHHHHHhhhhcCCCCCCCCeEec
Q 041682 49 SVMFRALLNQFEAKDKVDGPNPIVLP 74 (108)
Q Consensus 49 hp~F~~LL~~aeeEfG~~~~G~L~IP 74 (108)
+-.|-+++.++..|-+|..+|||.|-
T Consensus 38 EE~F~~mMdEl~~ee~F~~~GpL~iq 63 (224)
T COG4862 38 EELFYEMMDELNLEEDFKDEGPLWIQ 63 (224)
T ss_pred HHHHHHHHHhcCCccccccCCceEEE
Confidence 56799999999999999999999874
No 43
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.84 E-value=2.1e+02 Score=23.30 Aligned_cols=58 Identities=10% Similarity=0.141 Sum_probs=40.1
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. ..-.....-.++.++.|++.+ .+.+| ++.++|...+..+..+..
T Consensus 31 ~~P~Laii~vg~d~----------as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~~~el~~~I~~lN~D~~ 90 (284)
T PRK14190 31 IVPGLAVILVGDDP----------ASHSYVRGKKKAAEKVGIYSE-LYEFPADITEEELLALIDRLNADPR 90 (284)
T ss_pred CCCeEEEEEeCCCH----------HHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 44578889999652 233455667788888898753 56677 677788888887776543
No 44
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.48 E-value=2.5e+02 Score=22.90 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=40.8
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
+..+...|.||++. ..-.....-.++.+++|.+.+ .+.+| ++.+.|...+..+..+.+
T Consensus 29 ~~P~Laii~vg~d~----------as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~t~~~l~~~I~~lN~D~~ 88 (282)
T PRK14166 29 IESCLAVILVGDNP----------ASQTYVKSKAKACEECGIKSL-VYHLNENTTQNELLALINTLNHDDS 88 (282)
T ss_pred CCceEEEEEeCCCH----------HHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 45588899999652 123455667778888998763 56677 788888888887775543
No 45
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.28 E-value=2.1e+02 Score=23.48 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=40.7
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. ..-....--.++.+++|++.+ .+.+| ++.++|...+..+..+..
T Consensus 31 ~~p~LaiI~vgdd~----------as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~~~el~~~I~~lN~D~~ 90 (297)
T PRK14186 31 RPPGLAVLRVGDDP----------ASAVYVRNKEKACARVGIASF-GKHLPADTSQAEVEALIAQLNQDER 90 (297)
T ss_pred CCceEEEEEeCCCh----------HHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 44578889999652 234456667788888998763 44555 788888888888876653
No 46
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=27.62 E-value=1.2e+02 Score=21.21 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=34.0
Q ss_pred CceEEEEeecC-CeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEecCC
Q 041682 26 KGFRVMYIGEA-RQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCS 76 (108)
Q Consensus 26 kG~~aVyVG~e-~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IPC~ 76 (108)
+|++-||.|.= ..-=-+.+..-+...-++++.+|=+.||.+++.+-.--|.
T Consensus 2 ~g~iKVY~G~L~~~~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~Lv 53 (97)
T cd01783 2 KEVVKVYPGWLRVGVAYVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLI 53 (97)
T ss_pred CceEEEecCccccCcceEEEEecccchHHHHHHHHHHHhCcccCCccccEEE
Confidence 79999999941 1111123334466779999999999999998655444443
No 47
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=27.35 E-value=2.3e+02 Score=24.24 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=43.6
Q ss_pred cCCCceEEEEeec--------------------CCeEEEEeccccC--ChHHHHHHHhhhhcCCCCCCCCeEecCCHHHH
Q 041682 23 KVPKGFRVMYIGE--------------------ARQKFVVPIECLS--SVMFRALLNQFEAKDKVDGPNPIVLPCSPLMF 80 (108)
Q Consensus 23 ~vpkG~~aVyVG~--------------------e~~RfvVp~~yL~--hp~F~~LL~~aeeEfG~~~~G~L~IPC~~~~F 80 (108)
..++|-+.|.||. +..|++||++|=. .-...++.+.+++-||-+. +.+==+---|
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~---~~iL~e~mpf 256 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAEN---FQILTEFMPF 256 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccc---eeEhhhhCCH
Confidence 3457889999982 4689999999974 4577888888888888432 2222233345
Q ss_pred HHHHHHHhcC
Q 041682 81 QWILNLASSK 90 (108)
Q Consensus 81 e~vl~~i~~~ 90 (108)
+..+.++++-
T Consensus 257 ~eYl~lL~~c 266 (360)
T PF07429_consen 257 DEYLALLSRC 266 (360)
T ss_pred HHHHHHHHhC
Confidence 5556655543
No 48
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=26.89 E-value=73 Score=24.04 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=28.1
Q ss_pred ceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCC
Q 041682 27 GFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGP 68 (108)
Q Consensus 27 G~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~ 68 (108)
|.++++||-. |... .+-|...+|++...+++|.+.+
T Consensus 1 g~lvlFiGAG-----~S~~-~glP~W~~Ll~~l~~~~~~~~~ 36 (242)
T cd01406 1 GRVVIFVGAG-----VSVS-SGLPDWKTLLDEIASELGLEID 36 (242)
T ss_pred CCEEEEecCc-----cccc-cCCCChHHHHHHHHHHcCCccc
Confidence 7889999854 2222 5789999999999999997754
No 49
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=26.80 E-value=20 Score=30.40 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=17.9
Q ss_pred cccCCCceEEEEeecCC-e-EEEEe
Q 041682 21 RRKVPKGFRVMYIGEAR-Q-KFVVP 43 (108)
Q Consensus 21 ~~~vpkG~~aVyVG~e~-~-RfvVp 43 (108)
..-||.|-|++|||-|. + .|-||
T Consensus 87 ~i~iPh~sf~~y~g~~~ie~~~~vp 111 (366)
T PRK13277 87 AIFVPNRSFAVYVGYDAIENEFKVP 111 (366)
T ss_pred eEEecCCCeEEEecHHHHhhcCCCC
Confidence 35689999999999542 3 58888
No 50
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.76 E-value=2.4e+02 Score=23.00 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=41.6
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSPA 93 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~~ 93 (108)
++.+...|.||++. ..-....--.++.++.|+..+ .+.+| ++.+.|...+..+..+.+-
T Consensus 30 ~~P~Laii~vg~d~----------as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~~~~~l~~~I~~lN~d~~V 90 (286)
T PRK14184 30 RAPGLAVILVGEDP----------ASQVYVRNKERACEDAGIVSE-AFRLPADTTQEELEDLIAELNARPDI 90 (286)
T ss_pred CCCEEEEEEeCCCh----------hHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCcC
Confidence 44588889999752 123445566778888898864 56677 8888888888888765543
No 51
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.39 E-value=2.8e+02 Score=22.62 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=40.6
Q ss_pred cCCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 23 KVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 23 ~vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.++.+...|.||++. ..-....--.++.++.|++.+ .+.+| ++.+.+...+..+..+..
T Consensus 28 g~~P~LaiI~vg~d~----------as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~t~~~l~~~I~~lN~d~~ 88 (282)
T PRK14182 28 GVQTGLTVVRVGDDP----------ASAIYVRGKRKDCEEVGITSV-EHHLPATTTQAELLALIARLNADPA 88 (282)
T ss_pred CCCCeEEEEEeCCCH----------HHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 345688899999652 133455666778888898763 55666 777888888877766543
No 52
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=26.34 E-value=96 Score=20.52 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=18.8
Q ss_pred cCChHHHHHH----HhhhhcCCCCCCCCeEe
Q 041682 47 LSSVMFRALL----NQFEAKDKVDGPNPIVL 73 (108)
Q Consensus 47 L~hp~F~~LL----~~aeeEfG~~~~G~L~I 73 (108)
-..|.|++.| +.+=+||||.-+..+.|
T Consensus 14 w~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i 44 (77)
T TIGR03793 14 WEDEAFKQALLTNPKEALEREGVQVPAEVEV 44 (77)
T ss_pred HcCHHHHHHHHHCHHHHHHHhCCCCCCceEE
Confidence 3578999966 44456789997766554
No 53
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.33 E-value=2.3e+02 Score=22.69 Aligned_cols=56 Identities=7% Similarity=0.068 Sum_probs=36.5
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEe--cCCHHHHHHHHHHHhcC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVL--PCSPLMFQWILNLASSK 90 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~I--PC~~~~Fe~vl~~i~~~ 90 (108)
.+.+-..|.||++. ..-.....-.++.++.|.+.. -+.+ -|+.+.|+.++..+...
T Consensus 32 ~~p~L~~i~vg~~~----------~s~~Y~~~~~~~~~~~Gi~~~-~~~l~~~~~~~~l~~~i~~Ln~d 89 (283)
T PRK14192 32 RTPILATILVGDDP----------ASATYVRMKGNACRRVGMDSL-KVELPQETTTEQLLAKIEELNAN 89 (283)
T ss_pred CCCeEEEEEeCCCh----------hHHHHHHHHHHHHHHcCCeEE-EEECCCCCCHHHHHHHHHHHhCC
Confidence 44588899999652 233455666777777776642 3445 36777777777777655
No 54
>PF07369 DUF1488: Protein of unknown function (DUF1488); InterPro: IPR009962 This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.; PDB: 2GPI_A.
Probab=26.00 E-value=92 Score=19.91 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=17.6
Q ss_pred eEEEEeecCCeEEEEecccc
Q 041682 28 FRVMYIGEARQKFVVPIECL 47 (108)
Q Consensus 28 ~~aVyVG~e~~RfvVp~~yL 47 (108)
.|+++|++..-++.|..+-|
T Consensus 18 ~F~a~~~g~~i~C~Is~~aL 37 (83)
T PF07369_consen 18 RFPAQVDGMQIRCAISAEAL 37 (83)
T ss_dssp EEEEEETTEEEEEEEEHHHH
T ss_pred EEEEEECCEEEEEEEeHHHH
Confidence 58899988889999999877
No 55
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.79 E-value=2.8e+02 Score=22.61 Aligned_cols=58 Identities=12% Similarity=0.175 Sum_probs=39.8
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. ..-.....-.++.+++|...+ .+.+| ++.+.|...+..+..+..
T Consensus 30 ~~P~Laii~vg~d~----------as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~~~el~~~I~~lN~D~~ 89 (284)
T PRK14170 30 KKPGLAVVLVGDNQ----------ASRTYVRNKQKRTEEAGMKSV-LIELPENVTEEKLLSVVEELNEDKT 89 (284)
T ss_pred CCCeEEEEEeCCCH----------HHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 45588999999652 133456667778888897763 45666 667778888777766543
No 56
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=25.36 E-value=2e+02 Score=21.70 Aligned_cols=44 Identities=7% Similarity=-0.147 Sum_probs=33.6
Q ss_pred hHHHHHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHhcCCCC
Q 041682 50 VMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSKSPA 93 (108)
Q Consensus 50 p~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~~~~ 93 (108)
|.+..-+-..=++.|.+.+|.-++|.+...-+.+...++++...
T Consensus 10 P~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~ 53 (206)
T cd04376 10 PRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDV 53 (206)
T ss_pred CHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCC
Confidence 44443333444568999999999999999999999999887653
No 57
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=25.34 E-value=1.5e+02 Score=17.22 Aligned_cols=56 Identities=25% Similarity=0.320 Sum_probs=39.3
Q ss_pred EEeecCCeEEEEecccc--CChHHHHHHHhhhhcCCCCCCCCeEec-CCHHHHHHHHHHHhcCC
Q 041682 31 MYIGEARQKFVVPIECL--SSVMFRALLNQFEAKDKVDGPNPIVLP-CSPLMFQWILNLASSKS 91 (108)
Q Consensus 31 VyVG~e~~RfvVp~~yL--~hp~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~~i~~~~ 91 (108)
+-||+ ++|-+.-..| ..|.|+.++.....+- ....+.++ .+...|+.++..+-.+.
T Consensus 4 i~v~~--~~~~~h~~iL~~~s~~f~~~~~~~~~~~---~~~~i~l~~~~~~~f~~~l~~ly~~~ 62 (90)
T smart00225 4 LVVGG--KKFKAHKAVLAACSPYFKALFSGDFKES---KKSEIYLDDVSPEDFRALLEFLYTGK 62 (90)
T ss_pred EEECC--EEEehHHHHHhhcCHHHHHHHcCCCccC---CCCEEEecCCCHHHHHHHHHeecCce
Confidence 44553 6777776666 4688999998654432 33567776 69999999999888653
No 58
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.05 E-value=3.3e+02 Score=22.25 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=40.3
Q ss_pred CCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 25 PKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 25 pkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
..+...|.||++. ..-.....-.++.+++|++.+ .+.+| ++.+.|...+..+..+..
T Consensus 29 ~P~Laii~vg~d~----------as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~~~~el~~~I~~lN~D~~ 87 (287)
T PRK14173 29 VPHLRVVRLGEDP----------ASVSYVRLKDRQAKALGLRSQ-VEVLPESTSQEELLELIARLNADPE 87 (287)
T ss_pred CCcEEEEEeCCCH----------HHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 3478889999652 123445666778888998763 56777 778888888888876553
No 59
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=24.75 E-value=1.9e+02 Score=21.43 Aligned_cols=40 Identities=3% Similarity=-0.106 Sum_probs=31.4
Q ss_pred hHHH-HHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHhcC
Q 041682 50 VMFR-ALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSK 90 (108)
Q Consensus 50 p~F~-~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~ 90 (108)
|.+. .+++.. ++.|.+.+|..++|-+...-+.+...++++
T Consensus 17 P~iv~~ci~~l-~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~ 57 (194)
T cd04372 17 PMVVDMCIREI-EARGLQSEGLYRVSGFAEEIEDVKMAFDRD 57 (194)
T ss_pred ChHHHHHHHHH-HHcCCCcCceeecCCcHHHHHHHHHHHcCC
Confidence 4444 333444 567999999999999999999999999874
No 60
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.31 E-value=3.7e+02 Score=21.98 Aligned_cols=58 Identities=12% Similarity=0.245 Sum_probs=42.0
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. ..-.....-.++.++.|+..+ .+.+| ++.+.+...+..++.+..
T Consensus 37 ~~P~Laii~vg~d~----------aS~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~~~~el~~~I~~LN~D~~ 96 (287)
T PRK14176 37 ITPGLATILVGDDP----------ASKMYVRLKHKACERVGIRAE-DQFLPADTTQEELLELIDSLNKRKD 96 (287)
T ss_pred CCCeEEEEEECCCc----------chHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 44588899999752 244566777888889998764 55666 778888888888876553
No 61
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=24.13 E-value=1.7e+02 Score=21.75 Aligned_cols=39 Identities=10% Similarity=0.021 Sum_probs=31.1
Q ss_pred HHHHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHhcCC
Q 041682 52 FRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSKS 91 (108)
Q Consensus 52 F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~~ 91 (108)
...+++-. +..|.+.+|.-++|.+....+.+...++++.
T Consensus 19 l~~~i~~l-~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~ 57 (186)
T cd04407 19 LEKLLEHV-EMHGLYTEGIYRKSGSANRMKELHQLLQADP 57 (186)
T ss_pred HHHHHHHH-HHcCCCCCceeecCCCHHHHHHHHHHHhcCC
Confidence 33444544 5679999999999999999999999998653
No 62
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=24.03 E-value=56 Score=20.37 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=18.2
Q ss_pred ccCChHHHHHHHhhhhcCCCCC
Q 041682 46 CLSSVMFRALLNQFEAKDKVDG 67 (108)
Q Consensus 46 yL~hp~F~~LL~~aeeEfG~~~ 67 (108)
.+|||.|+..++.-+|.=|..-
T Consensus 5 l~~h~~~g~~I~~w~~~r~i~~ 26 (71)
T PF04304_consen 5 LLNHRLFGPYIRNWEEHRGIPR 26 (71)
T ss_pred HHcCchhHHHHHHHHHCCCcCH
Confidence 4799999999999998766553
No 63
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.97 E-value=3.4e+02 Score=22.19 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=39.7
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. ..-....--.++.++.|+..+ .+.+| ++.+.+...+..++.+..
T Consensus 31 ~~P~LaiI~vg~d~----------as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~~~~l~~~I~~LN~D~~ 90 (288)
T PRK14171 31 ASPKLAIVLVGDNP----------ASIIYVKNKIKNAHKIGIDTL-LVNLSTTIHTNDLISKINELNLDNE 90 (288)
T ss_pred CCCeEEEEEeCCCc----------cHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHcCCCC
Confidence 34478889999752 133445566777888898764 56777 778888877777766553
No 64
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=23.95 E-value=2.5e+02 Score=23.72 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=39.1
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. . .-....--.++.|++|+... .+.+| ++.+++...+..+..+..
T Consensus 85 ~~P~LaiIlvGddp------a----S~~Yv~~k~K~a~~~GI~~~-~~~l~~~~te~ell~~I~~lN~D~~ 144 (345)
T PLN02897 85 KVPGLAVVLVGQQR------D----SQTYVRNKIKACEETGIKSL-LAELPEDCTEGQILSALRKFNEDTS 144 (345)
T ss_pred CCCeEEEEEeCCCh------H----HHHHHHHHHHHHHhcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 44488889999652 1 12455666778888888764 45666 677778887777766543
No 65
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=23.27 E-value=2.5e+02 Score=20.57 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=34.3
Q ss_pred HHHHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHhcCCCCC
Q 041682 52 FRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSKSPAD 94 (108)
Q Consensus 52 F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~~~~~ 94 (108)
+..+++-.++ .|.+.+|..++|-+...-+.+...++++...+
T Consensus 24 l~~~i~~l~~-~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~ 65 (189)
T cd04393 24 VRHIVEYLEQ-HGLEQEGLFRVNGNAETVEWLRQRLDSGEEVD 65 (189)
T ss_pred HHHHHHHHHH-cCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCC
Confidence 3455555555 79999999999999999999999999876554
No 66
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=23.21 E-value=27 Score=27.40 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=35.0
Q ss_pred CCeEEEEeccccCChHHHHHHHhhhhcC-CCCCCCCeEecCCHHH
Q 041682 36 ARQKFVVPIECLSSVMFRALLNQFEAKD-KVDGPNPIVLPCSPLM 79 (108)
Q Consensus 36 e~~RfvVp~~yL~hp~F~~LL~~aeeEf-G~~~~G~L~IPC~~~~ 79 (108)
..+....|..|.++.-|...+++.+++| ++.+-..++|||+-..
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~ 139 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFR 139 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccC
Confidence 4667778888999999999999988888 4555566799998643
No 67
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=23.14 E-value=69 Score=24.64 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=28.4
Q ss_pred CeEEEEeccccCC-h-HHHHHHHhhhhcCCCCCC-CCeEe
Q 041682 37 RQKFVVPIECLSS-V-MFRALLNQFEAKDKVDGP-NPIVL 73 (108)
Q Consensus 37 ~~RfvVp~~yL~h-p-~F~~LL~~aeeEfG~~~~-G~L~I 73 (108)
.-+|.+|++||.. | .|++|+....+.+.+.|- +++.+
T Consensus 24 ~l~f~~P~~~l~~~~~~~~~l~~~~a~~L~~~~G~aGl~~ 63 (208)
T PF11876_consen 24 YLSFSLPLEWLEEGPGHFRALFLELAERLPPSHGYAGLAF 63 (208)
T ss_pred EEEEEeCHHHHhcCcHHHHHHHHHHHHHCCCCeEeeEEEE
Confidence 4589999999976 3 499999999998877763 45444
No 68
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=22.57 E-value=2.5e+02 Score=20.64 Aligned_cols=43 Identities=12% Similarity=-0.044 Sum_probs=32.4
Q ss_pred hHHHHHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHhcCCC
Q 041682 50 VMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSKSP 92 (108)
Q Consensus 50 p~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~~~ 92 (108)
|.|...+-..=++.|.+.+|.-++|-+...-+.+...++++..
T Consensus 17 P~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~ 59 (187)
T cd04403 17 PKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEK 59 (187)
T ss_pred ChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCC
Confidence 3443333333456799999999999999999999999987654
No 69
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.28 E-value=3.5e+02 Score=22.03 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=39.7
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. ..-....--.++.+++|+..+ .+.+| ++.+.|...+..+..+..
T Consensus 29 ~~P~Laii~vg~d~----------as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~~~el~~~I~~lN~D~~ 88 (282)
T PRK14169 29 VTPTLAVVLVGSDP----------ASEVYVRNKQRRAEDIGVRSL-MFRLPEATTQADLLAKVAELNHDPD 88 (282)
T ss_pred CCCeEEEEEeCCCh----------hHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 44478889999652 123445666778888898763 45666 778888888887776543
No 70
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.18 E-value=3.2e+02 Score=22.29 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=40.7
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. ..-.....-.++.++.|++.+ .+.+| ++.+.|...+..+..+..
T Consensus 30 ~~P~Laii~vg~d~----------as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~~~~el~~~I~~lN~D~~ 89 (295)
T PRK14174 30 KVPGLTVIIVGEDP----------ASQVYVRNKAKSCKEIGMNST-VIELPADTTEEHLLKKIEDLNNDPD 89 (295)
T ss_pred CCCeEEEEEeCCCh----------HHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 45588899999652 233455667778888898763 45566 778888888888876543
No 71
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=22.01 E-value=1.3e+02 Score=20.79 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=36.6
Q ss_pred cCCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCCC
Q 041682 23 KVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSPA 93 (108)
Q Consensus 23 ~vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~~ 93 (108)
.++.+...|+||++ | ..-.......++.+++|..-. ...+| ++...|...+..+..+..-
T Consensus 27 ~~~P~Laii~vg~d------~----~S~~Y~~~k~k~~~~~Gi~~~-~~~l~~~~~~~el~~~i~~lN~D~~V 88 (117)
T PF00763_consen 27 GITPKLAIILVGDD------P----ASISYVRSKQKAAEKLGIEFE-LIELPEDISEEELLELIEKLNEDPSV 88 (117)
T ss_dssp T---EEEEEEES--------H----HHHHHHHHHHHHHHHHT-EEE-EEEE-TTSSHHHHHHHHHHHHH-TT-
T ss_pred CCCcEEEEEecCCC------h----hHHHHHHHHHHHHHHcCCceE-EEECCCCcCHHHHHHHHHHHhCCCCC
Confidence 57788999999965 2 123466777888888897753 45554 5778888888888766543
No 72
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.88 E-value=3.5e+02 Score=22.07 Aligned_cols=58 Identities=9% Similarity=0.075 Sum_probs=40.6
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. ..-.....-.++.++.|+..+ .+.+| ++.+.|...+..+..+..
T Consensus 30 ~~P~LaiI~vg~d~----------as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~~~el~~~I~~lN~D~~ 89 (285)
T PRK14191 30 KRPKLAVILVGKDP----------ASQTYVNMKIKACERVGMDSD-LHTLQENTTEAELLSLIKDLNTDQN 89 (285)
T ss_pred CCCeEEEEEeCCCH----------HHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 44578888899652 133456677788888998763 56777 677888888887776543
No 73
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=21.87 E-value=2.6e+02 Score=20.50 Aligned_cols=44 Identities=2% Similarity=-0.059 Sum_probs=33.9
Q ss_pred hHHH-HHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHhcCCCCC
Q 041682 50 VMFR-ALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSKSPAD 94 (108)
Q Consensus 50 p~F~-~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~~~~~ 94 (108)
|.|. .+++-. ++.|.+.+|..++|-+...-+.+...++++...+
T Consensus 21 P~~v~~~i~~l-~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~ 65 (182)
T cd04381 21 PLVFRECIDYV-EKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPN 65 (182)
T ss_pred ChHHHHHHHHH-HHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCC
Confidence 4443 444444 4579999999999999999999999999876543
No 74
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=21.65 E-value=1.7e+02 Score=25.66 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=35.3
Q ss_pred ccCChHHHHHHHhhhhcCCCC----------CCCCeEecCCHHHHHHHHHHHhcC
Q 041682 46 CLSSVMFRALLNQFEAKDKVD----------GPNPIVLPCSPLMFQWILNLASSK 90 (108)
Q Consensus 46 yL~hp~F~~LL~~aeeEfG~~----------~~G~L~IPC~~~~Fe~vl~~i~~~ 90 (108)
--|+|.+..|++...+.||-. ..|-++|-++.+.+..|+..+...
T Consensus 272 ~pn~p~l~~l~~~L~e~fg~~i~~~~~i~~~~~d~lti~V~~e~L~eV~~~Lrd~ 326 (430)
T PRK07735 272 SVNQPYLNKYVEVIKEKLGEDVLEDSYINKLSKDVPTLVVEPEKYYEVAELLRFH 326 (430)
T ss_pred CCCchHHHHHHHHHHHHhhhhhhhhhhhccccCCceEEEEcHHHHHHHHHHHHhC
Confidence 447999999999998888732 236788999999999988877754
No 75
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.29 E-value=4e+02 Score=21.84 Aligned_cols=58 Identities=5% Similarity=0.087 Sum_probs=40.1
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
.+.+...|.||++. ..-....--.++.++.|+..+ .+.+| ++.+.+...+..+..+..
T Consensus 30 ~~P~LaiI~vg~d~----------as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~~~~el~~~I~~lN~D~~ 89 (297)
T PRK14167 30 VTPGLATVLMSDDP----------ASETYVSMKQRDCEEVGIEAI-DVEIDPDAPAEELYDTIDELNADED 89 (297)
T ss_pred CCceEEEEEeCCCH----------HHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCC
Confidence 44588889999652 233455667778888898764 56666 667788888877776543
No 76
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.26 E-value=4e+02 Score=21.82 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=37.9
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKS 91 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~ 91 (108)
.+.+...|.||++. ..-.....-.++.++.|+..+ .+.+| ++.+.|...+..+..+.
T Consensus 31 ~~P~LaiI~vg~d~----------as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~e~~l~~~I~~lN~d~ 89 (294)
T PRK14187 31 LFPCLIVILVGDDP----------ASQLYVRNKQRKAEMLGLRSE-TILLPSTISESSLIEKINELNNDD 89 (294)
T ss_pred CCCeEEEEEeCCCh----------hHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCC
Confidence 45588899999652 233455666777888887753 45555 66777777777776554
No 77
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=20.91 E-value=1.5e+02 Score=20.16 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=20.1
Q ss_pred ecCCeEEEEeccccCChHHHHHHHhhhhcCC
Q 041682 34 GEARQKFVVPIECLSSVMFRALLNQFEAKDK 64 (108)
Q Consensus 34 G~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG 64 (108)
|+|-+|+.+|.. .=.|.+|.......|.
T Consensus 8 g~DiR~~~~~~~---~~t~~~L~~~v~~~F~ 35 (81)
T cd06401 8 GDDIRRIPIHNE---DITYDELLLMMQRVFR 35 (81)
T ss_pred CCeEEEEeccCc---cccHHHHHHHHHHHhc
Confidence 778899777742 1267888888877776
No 78
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=20.84 E-value=3.7e+02 Score=22.90 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=37.8
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKSP 92 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~~ 92 (108)
++.+...|.||++. ..-....--.++.|+.|++.. .+.+| ++.+++...+..+..+..
T Consensus 102 ~~P~LaiIlvG~dp----------aS~~Yv~~k~K~~e~~GI~~~-~~~lpe~~te~ell~~I~~LN~D~~ 161 (364)
T PLN02616 102 VVPGLAVILVGDRK----------DSATYVRNKKKACDSVGINSF-EVRLPEDSTEQEVLKFISGFNNDPS 161 (364)
T ss_pred CCCeEEEEEeCCCh----------hHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHcCCCC
Confidence 44588899999652 133455666778888888752 45555 566677777777765443
No 79
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=20.74 E-value=78 Score=25.31 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=26.5
Q ss_pred CceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCC
Q 041682 26 KGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVD 66 (108)
Q Consensus 26 kG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~ 66 (108)
.-.+.++-|...++--.=-+|.++|.|+++++++++-.|++
T Consensus 38 ~~~a~lFpGQGsq~~gm~~~~~~~p~~~~~~~~~~~~lg~~ 78 (343)
T PLN02752 38 PTTAFLFPGQGAQAVGMGKEAAEVPAAKALFDKASEILGYD 78 (343)
T ss_pred CCEEEEECCCCcchhhHHHHHHhCHHHHHHHHHHHHHhCCC
Confidence 33444555643332222223678999999999999988876
No 80
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.70 E-value=3.9e+02 Score=21.73 Aligned_cols=57 Identities=12% Similarity=0.051 Sum_probs=38.2
Q ss_pred CCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEec--CCHHHHHHHHHHHhcCC
Q 041682 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLP--CSPLMFQWILNLASSKS 91 (108)
Q Consensus 24 vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~ 91 (108)
++.+...|.||++. ..-....--.++.++.|+..+ .+.+| ++.+.|...+..+..+.
T Consensus 31 ~~p~Laii~vg~~~----------as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~~~~l~~~I~~lN~d~ 89 (286)
T PRK14175 31 FTPKLSVILVGNDG----------ASQSYVRSKKKAAEKIGMISE-IVHLEETATEEEVLNELNRLNNDD 89 (286)
T ss_pred CCCeEEEEEeCCCH----------HHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCC
Confidence 45578889999652 123445666777888897763 55666 66777777777776554
No 81
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=20.58 E-value=2.7e+02 Score=20.83 Aligned_cols=42 Identities=5% Similarity=-0.101 Sum_probs=32.6
Q ss_pred hHHH-HHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHhcCCC
Q 041682 50 VMFR-ALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSKSP 92 (108)
Q Consensus 50 p~F~-~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~~~ 92 (108)
|.|. .+++.. ++.|.+.+|.-++|-+...-+.+...++++..
T Consensus 18 P~~l~~ci~~i-e~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~ 60 (193)
T cd04382 18 PALIVHCVNEI-EARGLTEEGLYRVSGSEREVKALKEKFLRGKT 60 (193)
T ss_pred cHHHHHHHHHH-HHcCCCCCCeeecCCcHHHHHHHHHHHHcCCC
Confidence 4444 444444 56799999999999999999999999986543
Done!