BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041683
(743 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 177/677 (26%), Positives = 276/677 (40%), Gaps = 68/677 (10%)
Query: 1 LSGNQFQGQIPS--RLGNLTSLKYLDLSSNELN--STVLGWLSKVNDLEFLSVYSNRLQG 56
LS N G + + LG+ + LK+L++SSN L+ V G L K+N LE L + +N + G
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISG 165
Query: 57 -NVSSLGL-ENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQD-ISEILG 113
NV L + +K L +S N ++ G + S ++ F +S + S +
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGN-KISGDVDVS-------RCVNLEFLDVSSNNFSTGIP 217
Query: 114 IFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEY 173
C A L+ L + +++ G + + L L++S+ G IP + +L+Y
Sbjct: 218 FLGDCSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273
Query: 174 LDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPR 233
L L+ NK G + + L +GN + P + L L L S +
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 234 FPL-WLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMP 292
P+ L R L LD+S S ++P N L++S N F P +P
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-------FSGPILP 386
Query: 293 -LITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEF--LKLSKNNFSGDIPDCWM 349
L P + L ++ L NN +G I SN E L LS N SG IP
Sbjct: 387 NLCQNPKNTLQELY-LQNNGFTGKI------PPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 350 NWLRLRALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXXXXPTSFKNFSSLEVLDLGE 409
+ +LR L L N G +P P+ N ++L + L
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 410 NELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCI 469
N L G IP WIG R L IL L +N F G+ P +L L LD+ +N +GTIP +
Sbjct: 500 NRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 470 NNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDAS--LVMKGVLVEYNSILNLVRSIDVS 527
S + +Y ++++G + A L +G+ E + L+ +++
Sbjct: 559 FKQSGKIAANFIAGKRYVY--IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616
Query: 528 KNIFSGEIPVEVTNLQGLQSLNLSHNLL------------------------TGRIPDNI 563
++ G N + L++S+N+L +G IPD +
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 564 GVMRSIESLDLSANQLSGQIPQXXXXXXXXXXXXXXXXXXVGKIPSSTQLQSFGASSFAG 623
G +R + LDLS+N+L G+IPQ G IP Q ++F + F
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Query: 624 ND-LCGDPLSNCTEKNV 639
N LCG PL C N
Sbjct: 737 NPGLCGYPLPRCDPSNA 753
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 162/589 (27%), Positives = 234/589 (39%), Gaps = 155/589 (26%)
Query: 18 TSLKYLDLSSNELNS--TVLGWLSKVNDLEFLSVYSNRLQ--GNVSSLGLENLTSIKRLY 73
SL LDLS N L+ T L L + L+FL+V SN L G VS GL+ L S++ L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG-GLK-LNSLEVLD 157
Query: 74 LSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQI 133
LS N G + ++G + EL+ L + ++I
Sbjct: 158 LSANSISG---------------------------ANVVGWVLSDGCGELKHLAISGNKI 190
Query: 134 FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNL 193
G + + R L LD+S+ IPF LG S L++LD+S NKL+G S
Sbjct: 191 SGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTC 246
Query: 194 TKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTR 253
T+L + N + GP PL L+S L L ++ +
Sbjct: 247 TELKLLNISSNQFV-----------------------GPIPPLPLKS---LQYLSLAENK 280
Query: 254 ISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKF--------------DNPS--MPLITTP 297
+ +IP + L++SGN YG +P F +N S +P+ T
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 298 SDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDI-PD-CWMNWLRLR 355
+ DLS N SG + + N S ++ L LS NNFSG I P+ C L+
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 356 ALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXXXXPTSFKNFSSLEVLDLGENELVGS 415
L L +N FTG + P + N S L L L N L G+
Sbjct: 398 ELYLQNNGFTGKI------------------------PPTLSNCSELVSLHLSFNYLSGT 433
Query: 416 IPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAM 475
IPS +G S L+ L L N G+ P +L + L+ L + N L+G IP ++N + +
Sbjct: 434 IPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 476 AITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEI 535
I +S N +GEI
Sbjct: 493 ----------------------------------------------NWISLSNNRLTGEI 506
Query: 536 PVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIP 584
P + L+ L L LS+N +G IP +G RS+ LDL+ N +G IP
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 124/462 (26%), Positives = 200/462 (43%), Gaps = 53/462 (11%)
Query: 136 HLTNQLRRFK---RLNSLDLSNTILDGSIPF--SLGQISNLEYLDLSNNKLNGTVSEIHF 190
H+ + FK L SLDLS L G + SLG S L++L++S+N L+
Sbjct: 88 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147
Query: 191 VNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHL-GPRFPLWLQSQRELN--DL 247
+ L L + NS+ WV EL+ + G + + R +N L
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWV--LSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205
Query: 248 DISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDL 307
D+SS S IP F +L+ISGN++ G + I+T ++L + ++
Sbjct: 206 DVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSR-------AISTCTEL--KLLNI 254
Query: 308 SNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWL-RLRALNLGHNNFTG 366
S+N G I L + ++++L L++N F+G+IPD L L+L N+F G
Sbjct: 255 SSNQFVGPIPPLPLK------SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 367 SLPMXXXXXXXXXXXXXXXXXXXXXXPT-SFKNFSSLEVLDLGENELVGSIPSWIGERFS 425
++P P + L+VLDL NE G +P + +
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 426 ILKILNLRSNKFHGDFPIQLC--GLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQ 483
L L+L SN F G LC LQ L + +N +G IP ++N S +
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL-------- 420
Query: 484 AVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQ 543
V L+ S + G + L+ +R + + N+ GEIP E+ ++
Sbjct: 421 -VSLHLSFN-------------YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466
Query: 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQ 585
L++L L N LTG IP + ++ + LS N+L+G+IP+
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 177/677 (26%), Positives = 276/677 (40%), Gaps = 68/677 (10%)
Query: 1 LSGNQFQGQIPS--RLGNLTSLKYLDLSSNELN--STVLGWLSKVNDLEFLSVYSNRLQG 56
LS N G + + LG+ + LK+L++SSN L+ V G L K+N LE L + +N + G
Sbjct: 104 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISG 162
Query: 57 -NVSSLGL-ENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLS-QDISEILG 113
NV L + +K L +S N ++ G + S ++ F +S + S +
Sbjct: 163 ANVVGWVLSDGCGELKHLAISGN-KISGDVDVS-------RCVNLEFLDVSSNNFSTGIP 214
Query: 114 IFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEY 173
C A L+ L + +++ G + + L L++S+ G IP + +L+Y
Sbjct: 215 FLGDCSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 270
Query: 174 LDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPR 233
L L+ NK G + + L +GN + P + L L L S +
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 234 FPL-WLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMP 292
P+ L R L LD+S S ++P N L++S N F P +P
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-------FSGPILP 383
Query: 293 -LITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEF--LKLSKNNFSGDIPDCWM 349
L P + L ++ L NN +G I SN E L LS N SG IP
Sbjct: 384 NLCQNPKNTLQELY-LQNNGFTGKI------PPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 350 NWLRLRALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXXXXPTSFKNFSSLEVLDLGE 409
+ +LR L L N G +P P+ N ++L + L
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Query: 410 NELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCI 469
N L G IP WIG R L IL L +N F G+ P +L L LD+ +N +GTIP +
Sbjct: 497 NRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 470 NNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDAS--LVMKGVLVEYNSILNLVRSIDVS 527
S + +Y ++++G + A L +G+ E + L+ +++
Sbjct: 556 FKQSGKIAANFIAGKRYVY--IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 613
Query: 528 KNIFSGEIPVEVTNLQGLQSLNLSHNLL------------------------TGRIPDNI 563
++ G N + L++S+N+L +G IPD +
Sbjct: 614 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 673
Query: 564 GVMRSIESLDLSANQLSGQIPQXXXXXXXXXXXXXXXXXXVGKIPSSTQLQSFGASSFAG 623
G +R + LDLS+N+L G+IPQ G IP Q ++F + F
Sbjct: 674 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Query: 624 N-DLCGDPLSNCTEKNV 639
N LCG PL C N
Sbjct: 734 NPGLCGYPLPRCDPSNA 750
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 162/589 (27%), Positives = 234/589 (39%), Gaps = 155/589 (26%)
Query: 18 TSLKYLDLSSNELNS--TVLGWLSKVNDLEFLSVYSNRLQ--GNVSSLGLENLTSIKRLY 73
SL LDLS N L+ T L L + L+FL+V SN L G VS GL+ L S++ L
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG-GLK-LNSLEVLD 154
Query: 74 LSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQI 133
LS N G + ++G + EL+ L + ++I
Sbjct: 155 LSANSISG---------------------------ANVVGWVLSDGCGELKHLAISGNKI 187
Query: 134 FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNL 193
G + + R L LD+S+ IPF LG S L++LD+S NKL+G S
Sbjct: 188 SGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTC 243
Query: 194 TKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTR 253
T+L + N + GP PL L+S L L ++ +
Sbjct: 244 TELKLLNISSNQFV-----------------------GPIPPLPLKS---LQYLSLAENK 277
Query: 254 ISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKF--------------DNPS--MPLITTP 297
+ +IP + L++SGN YG +P F +N S +P+ T
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 298 SDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDI-PD-CWMNWLRLR 355
+ DLS N SG + + N S ++ L LS NNFSG I P+ C L+
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 356 ALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXXXXPTSFKNFSSLEVLDLGENELVGS 415
L L +N FTG + P + N S L L L N L G+
Sbjct: 395 ELYLQNNGFTGKI------------------------PPTLSNCSELVSLHLSFNYLSGT 430
Query: 416 IPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAM 475
IPS +G S L+ L L N G+ P +L + L+ L + N L+G IP ++N + +
Sbjct: 431 IPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 476 AITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEI 535
I +S N +GEI
Sbjct: 490 ----------------------------------------------NWISLSNNRLTGEI 503
Query: 536 PVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIP 584
P + L+ L L LS+N +G IP +G RS+ LDL+ N +G IP
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 124/462 (26%), Positives = 200/462 (43%), Gaps = 53/462 (11%)
Query: 136 HLTNQLRRFK---RLNSLDLSNTILDGSIPF--SLGQISNLEYLDLSNNKLNGTVSEIHF 190
H+ + FK L SLDLS L G + SLG S L++L++S+N L+
Sbjct: 85 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 144
Query: 191 VNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHL-GPRFPLWLQSQRELN--DL 247
+ L L + NS+ WV EL+ + G + + R +N L
Sbjct: 145 LKLNSLEVLDLSANSISGANVVGWV--LSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 202
Query: 248 DISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDL 307
D+SS S IP F +L+ISGN++ G + I+T ++L + ++
Sbjct: 203 DVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSR-------AISTCTEL--KLLNI 251
Query: 308 SNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWL-RLRALNLGHNNFTG 366
S+N G I L + ++++L L++N F+G+IPD L L+L N+F G
Sbjct: 252 SSNQFVGPIPPLPLK------SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 367 SLPMXXXXXXXXXXXXXXXXXXXXXXPT-SFKNFSSLEVLDLGENELVGSIPSWIGERFS 425
++P P + L+VLDL NE G +P + +
Sbjct: 306 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 426 ILKILNLRSNKFHGDFPIQLC--GLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQ 483
L L+L SN F G LC LQ L + +N +G IP ++N S +
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL-------- 417
Query: 484 AVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQ 543
V L+ S + G + L+ +R + + N+ GEIP E+ ++
Sbjct: 418 -VSLHLSFN-------------YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 463
Query: 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQ 585
L++L L N LTG IP + ++ + LS N+L+G+IP+
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 117/271 (43%), Gaps = 54/271 (19%)
Query: 393 PTSFKNFSSLEVLDLGE-NELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFL 451
P+S N L L +G N LVG IP I + + L L + G P L + L
Sbjct: 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 452 QILDVASNSLSGTIPRCINNLSAM------------AITDSYDQAVILYSSL-----RSE 494
LD + N+LSGT+P I++L + AI DSY L++S+ R
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 495 GQ-SEIFEDASLVM----KGVLVEYNSIL----NLVRSIDVSKNIFSGEIPVEVTNLQGL 545
G+ F + +L + +L S+L + I ++KN + ++ +V + L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNL 246
Query: 546 QSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQXXXXXXXXXXXXXXXXXXVG 605
L+L +N + G +P + ++ + SL++S N L G+IPQ
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-------------------- 286
Query: 606 KIPSSTQLQSFGASSFAGND-LCGDPLSNCT 635
LQ F S++A N LCG PL CT
Sbjct: 287 ----GGNLQRFDVSAYANNKCLCGSPLPACT 313
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 115/280 (41%), Gaps = 32/280 (11%)
Query: 9 QIPSRLGNLTSLKYLDLSSNELNSTVLGWLS-------KVNDLEFLSVYSNRLQGNVSSL 61
QI LGN T+L +++ N T LG L +VN+L+ + + SSL
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72
Query: 62 GLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVAN 121
NL + LY+ + L G IP + KL +L + T +S I + L V
Sbjct: 73 A--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130
Query: 122 E-------------------LESLRLGSSQIFGHLTNQLRRFKRL-NSLDLSNTILDGSI 161
+ L + ++I G + + F +L S+ +S L G I
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Query: 162 PFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLT 221
P + + NL ++DLS N L G S + + A NSL F + + L
Sbjct: 191 PPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK-NSLAFDLGKVGLSK-NLN 247
Query: 222 VLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRG 261
L+LR+ + P L + L+ L++S + +IP+G
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 33/197 (16%)
Query: 8 GQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLT 67
G IP L + +L LD S N L+ T+ +S + +L ++ NR+ G + ++
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP----DSYG 170
Query: 68 SIKRLYLS---ENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILG----------- 113
S +L+ S + L GKIP +F L L + L D S + G
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 114 -------IFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLG 166
+ ++ L L L +++I+G L L + K L+SL++S L G IP
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP---- 285
Query: 167 QISNLEYLDLS---NNK 180
Q NL+ D+S NNK
Sbjct: 286 QGGNLQRFDVSAYANNK 302
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 98/260 (37%), Gaps = 37/260 (14%)
Query: 134 FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLD-LSNNKLNGTVSEI--HF 190
G L + + R+N+LDLS L P ++NL YL+ L +N V I
Sbjct: 39 LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAI 97
Query: 191 VNLTKLAFFRANGNSLIFKINPNWVPPFQ-LTVLELRSCHLGPRFPLWLQSQRELNDLDI 249
LT+L + ++ I P+++ + L L+ L P + S L +
Sbjct: 98 AKLTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 250 SSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPK-FDNPSMPLITTPSDLLGPIFDLS 308
RIS IP + + + + IS N++ G IP F N ++ + DLS
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV-----------DLS 205
Query: 309 NNALSGSIFHLICQGEN-------------------FSNNIEFLKLSKNNFSGDIPDCWM 349
N L G L +N S N+ L L N G +P
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 350 NWLRLRALNLGHNNFTGSLP 369
L +LN+ NN G +P
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP 285
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
L+GNQ Q LT+LK L L N+L S G K+ +L +L +Y N+LQ
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKG 151
Query: 61 LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKL 104
+ + LT++ RL L +N++L F KL +L S+ +L
Sbjct: 152 V-FDKLTNLTRLDL-DNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 12 SRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKR 71
S L LT+L YL L+ N+L S G K+ +L+ L + N+LQ + + LT++
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV-FDKLTNLTY 137
Query: 72 LYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSS 131
LYL N +L F KL LT + +L Q + E G+F +L+ L L +
Sbjct: 138 LYLYHN-QLQSLPKGVFDKLTNLTRLDLDNNQL-QSLPE--GVFDKLT--QLKQLSLNDN 191
Query: 132 QI 133
Q+
Sbjct: 192 QL 193
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 34/183 (18%)
Query: 17 LTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSE 76
L +++YL L N+L+ + L ++ +L +L + N+LQ + + + LT++K L L E
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGV-FDKLTNLKELVLVE 118
Query: 77 NDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGH 136
N +L F KL LT + N+L+SL G +F
Sbjct: 119 N-QLQSLPDGVFDKLTNLTYLYLYH-------------------NQLQSLPKG---VFDK 155
Query: 137 LTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKL 196
LTN L LDL N L +++ L+ L L++N+L +V + F LT L
Sbjct: 156 LTN-------LTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSL 207
Query: 197 AFF 199
Sbjct: 208 THI 210
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
L NQ Q LT+L LDL +N+L S G K+ L+ LS+ N+L+ V
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPD 198
Query: 61 LGLENLTSIKRLYLSEN 77
+ LTS+ ++L N
Sbjct: 199 GVFDRLTSLTHIWLLNN 215
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 120/490 (24%), Positives = 183/490 (37%), Gaps = 135/490 (27%)
Query: 9 QIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDL----------------------EF 46
++P NLT+L++LDLSSN++ S L ++ + +
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 47 LSVYSNRLQGNVSSL--------GLENLTSIKRLYLSE---NDELGGKIPTSFGKLCKLT 95
+ ++ L+ N SL GL L + RL L E L ++ LC LT
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGL-EVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 96 SFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQI---------FG--HL------- 137
R L + +I+ +F+ C+ N + S L S I FG HL
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFN-CLTN-VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316
Query: 138 ----TNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN--GTVSEIHFV 191
T +L+ KRL + T G FS + +LE+LDLS N L+ G S+ F
Sbjct: 317 GQFPTLKLKSLKRL-----TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF- 370
Query: 192 NLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLG--PRFPLWLQSQRELNDLDI 249
T L + + N +I ++ N++ QL L+ + +L F ++L S R L LDI
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDI 428
Query: 250 SSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSN 309
S T G +N + L ++GN F +P I T
Sbjct: 429 SHTHTRVAF-NGIFNGLSSLEVLKMAGN-------SFQENFLPDIFTE------------ 468
Query: 310 NALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNF--TGS 367
N+ FL LS+ P + + L+ LN+ HNNF +
Sbjct: 469 -----------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511
Query: 368 LPMXXXXXXXXXXXXXXXXXXXXXXPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSIL 427
P +K +SL+VLD N ++ S + S L
Sbjct: 512 FP--------------------------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Query: 428 KILNLRSNKF 437
LNL N F
Sbjct: 546 AFLNLTQNDF 555
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 514 YNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG-RIPDNIGVMRSIESL 572
++ + +L + + V N+ S E + +L+ L+ LN++HNL+ ++P+ + ++E L
Sbjct: 96 FSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 573 DLSANQL 579
DLS+N++
Sbjct: 155 DLSSNKI 161
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 10/184 (5%)
Query: 10 IPSR-LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGL-ENLT 67
+PS+ LT L+ L L+ N+L + G ++ +LE L V N+LQ +G+ + L
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA--LPIGVFDQLV 109
Query: 68 SIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLR 127
++ L L N +L P F L KLT S+ + +L S G+F + L+ LR
Sbjct: 110 NLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQ---SLPKGVFDKLTS--LKELR 163
Query: 128 LGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSE 187
L ++Q+ + L +L L N L + + L+ L L N + T +
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223
Query: 188 IHFV 191
I ++
Sbjct: 224 IIYM 227
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
L NQ + P +LT L YL L NEL S G K+ L+ L +Y+N+L+ V
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPE 174
Query: 61 LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR 100
+ LT +K L L +N++L +F L KL ++
Sbjct: 175 GAFDKLTELKTLKL-DNNQLKRVPEGAFDSLEKLKMLQLQ 213
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 105/457 (22%), Positives = 171/457 (37%), Gaps = 52/457 (11%)
Query: 17 LTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSE 76
L+ L+ L LS N + S DLE+L V NRLQ N+S + S++ L LS
Sbjct: 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCCP---MASLRHLDLSF 130
Query: 77 NDELGGKIPTSFGKLCKLTSFSMRFTKLSQ-DISEILGIFSACVANELESLRLGSSQIFG 135
ND + FG L KLT + K Q D+ + + +C+ L L S I G
Sbjct: 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL-----LDLVSYHIKG 185
Query: 136 HLTN--QLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNL 193
T Q+ L+ + N++ + S ++ L +L LSN KLN + L
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMS---VNALGHLQLSNIKLNDENCQRLMTFL 242
Query: 194 TKLAFFRANGNSLIFKINPNW---VPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDIS 250
++L N + I W V FQ R + L + + + + S
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQF--FWPRPVEYLNIYNLTITERIDREEFTYS 300
Query: 251 STRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNN 310
T + + + N ++ + S +Y + + + + TP
Sbjct: 301 ETALKSLMIEHVKNQVFLF-----SKEALYSVFAEMNIKMLSISDTP------------- 342
Query: 311 ALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHN---NFTGS 367
H++C ++ FL ++N F+ + RL+ L L N NF
Sbjct: 343 -----FIHMVCPPS--PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395
Query: 368 LPMXXXXXXXXXXXXXXXXXXXXXXPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSIL 427
M + S+ VL+L N L GS+ + + +
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK---V 452
Query: 428 KILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGT 464
K+L+L +N+ P + L LQ L+VASN L
Sbjct: 453 KVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSV 488
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESL 572
V+ +D+ N IP +VT+LQ LQ LN++ N L +PD GV + SL
Sbjct: 452 VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPD--GVFDRLTSL 499
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 36/222 (16%)
Query: 3 GNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLG 62
GNQ P L NLT+L+ LD+SSN+++ + L+K+ +LE L +N++ +++ LG
Sbjct: 163 GNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQI-SDITPLG 217
Query: 63 LENLTSIKRLYLSEND--ELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
+ LT++ L L+ N ++G + L LT + ++S +++ + G+
Sbjct: 218 I--LTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQIS-NLAPLSGL------ 263
Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
+L L+LG++QI + L L +L+L+ L+ P S + NL YL L N
Sbjct: 264 TKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNN 319
Query: 181 LNGTVSEIHFV-NLTKLA--FFRANG----NSLIFKINPNWV 215
+S+I V +LTKL FF N +SL N NW+
Sbjct: 320 ----ISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWL 357
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 99/219 (45%), Gaps = 46/219 (21%)
Query: 6 FQGQIPS--RLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLG- 62
F QI L NLT+L L+LSSN ++ + LS + L+ LS + N+ V+ L
Sbjct: 119 FNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS-FGNQ----VTDLKP 171
Query: 63 LENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEI--LGIFSACVA 120
L NLT+++RL +S N K+ + L KLT+ +Q IS+I LGI +
Sbjct: 172 LANLTTLERLDISSN-----KV-SDISVLAKLTNLESLIATNNQ-ISDITPLGILT---- 220
Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFS---------LG--QIS 169
L+ L L +Q+ T L L LDL+N + P S LG QIS
Sbjct: 221 -NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 277
Query: 170 N---------LEYLDLSNNKLNGTVSEIHFVNLTKLAFF 199
N L L+L+ N+L + NLT L +
Sbjct: 278 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 316
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 36/222 (16%)
Query: 3 GNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLG 62
GNQ P L NLT+L+ LD+SSN+++ + L+K+ +LE L +N++ +++ LG
Sbjct: 159 GNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQI-SDITPLG 213
Query: 63 LENLTSIKRLYLSEND--ELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
+ LT++ L L+ N ++G + L LT + ++S +++ + G+
Sbjct: 214 I--LTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQIS-NLAPLSGLT----- 260
Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
+L L+LG++QI + L L +L+L+ L+ P S + NL YL L N
Sbjct: 261 -KLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNN 315
Query: 181 LNGTVSEIHFV-NLTKLA--FFRANG----NSLIFKINPNWV 215
+S+I V +LTKL FF N +SL N NW+
Sbjct: 316 ----ISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWL 353
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 97/221 (43%), Gaps = 50/221 (22%)
Query: 6 FQGQIPS--RLGNLTSLKYLDLSSNELNS-TVLGWLSKVNDLEFLSVYSNRLQGN-VSSL 61
F QI L NLT+L L+LSSN ++ + L L+ + L F GN V+ L
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF---------GNQVTDL 165
Query: 62 G-LENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEI--LGIFSAC 118
L NLT+++RL +S N K+ + L KLT+ +Q IS+I LGI +
Sbjct: 166 KPLANLTTLERLDISSN-----KV-SDISVLAKLTNLESLIATNNQ-ISDITPLGILT-- 216
Query: 119 VANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFS---------LG--Q 167
L+ L L +Q+ T L L LDL+N + P S LG Q
Sbjct: 217 ---NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 271
Query: 168 ISN---------LEYLDLSNNKLNGTVSEIHFVNLTKLAFF 199
ISN L L+L+ N+L + NLT L +
Sbjct: 272 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 312
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 28/218 (12%)
Query: 3 GNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLG 62
GNQ P L NLT+L+ LD+SSN+++ + L+K+ +LE L +N++ +++ LG
Sbjct: 164 GNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQI-SDITPLG 218
Query: 63 LENLTSIKRLYLSEND--ELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
+ LT++ L L+ N ++G + L LT + ++S +++ + G+
Sbjct: 219 I--LTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQIS-NLAPLSGL------ 264
Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
+L L+LG++QI + L L +L+L+ L+ P S + NL YL L N
Sbjct: 265 TKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNN 320
Query: 181 LNGTVSEIHFVNLTKLAFFR---ANGNSLIFKINPNWV 215
++ L +L F+ ++ +SL N NW+
Sbjct: 321 ISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 358
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 99/219 (45%), Gaps = 46/219 (21%)
Query: 6 FQGQIPS--RLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLG- 62
F QI L NLT+L L+LSSN ++ + LS + L+ LS + N+ V+ L
Sbjct: 120 FNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS-FGNQ----VTDLKP 172
Query: 63 LENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEI--LGIFSACVA 120
L NLT+++RL +S N K+ + L KLT+ +Q IS+I LGI +
Sbjct: 173 LANLTTLERLDISSN-----KV-SDISVLAKLTNLESLIATNNQ-ISDITPLGILT---- 221
Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFS---------LG--QIS 169
L+ L L +Q+ T L L LDL+N + P S LG QIS
Sbjct: 222 -NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 278
Query: 170 N---------LEYLDLSNNKLNGTVSEIHFVNLTKLAFF 199
N L L+L+ N+L + NLT L +
Sbjct: 279 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 317
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 28/218 (12%)
Query: 3 GNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLG 62
GNQ P L NLT+L+ LD+SSN+++ + L+K+ +LE L +N++ +++ LG
Sbjct: 159 GNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQI-SDITPLG 213
Query: 63 LENLTSIKRLYLSEND--ELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
+ LT++ L L+ N ++G + L LT + ++S +++ + G+
Sbjct: 214 I--LTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQIS-NLAPLSGLT----- 260
Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
+L L+LG++QI + L L +L+L+ L+ P S + NL YL L N
Sbjct: 261 -KLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNN 315
Query: 181 LNGTVSEIHFVNLTKLAFFR---ANGNSLIFKINPNWV 215
++ L +L F+ ++ +SL N NW+
Sbjct: 316 ISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 353
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 97/221 (43%), Gaps = 50/221 (22%)
Query: 6 FQGQIPS--RLGNLTSLKYLDLSSNELNS-TVLGWLSKVNDLEFLSVYSNRLQGN-VSSL 61
F QI L NLT+L L+LSSN ++ + L L+ + L F GN V+ L
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF---------GNQVTDL 165
Query: 62 G-LENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEI--LGIFSAC 118
L NLT+++RL +S N K+ + L KLT+ +Q IS+I LGI +
Sbjct: 166 KPLANLTTLERLDISSN-----KV-SDISVLAKLTNLESLIATNNQ-ISDITPLGILT-- 216
Query: 119 VANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFS---------LG--Q 167
L+ L L +Q+ T L L LDL+N + P S LG Q
Sbjct: 217 ---NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 271
Query: 168 ISN---------LEYLDLSNNKLNGTVSEIHFVNLTKLAFF 199
ISN L L+L+ N+L + NLT L +
Sbjct: 272 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 312
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 36/223 (16%)
Query: 2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSL 61
S NQ P L NLT+L+ LD+SSN+++ + L+K+ +LE L +N++ +++ L
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQI-SDITPL 213
Query: 62 GLENLTSIKRLYLSEND--ELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
G+ LT++ L L+ N ++G + L LT + ++S +++ + G+
Sbjct: 214 GI--LTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQIS-NLAPLSGLT---- 261
Query: 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
+L L+LG++QI + L L +L+L+ L+ P S + NL YL L N
Sbjct: 262 --KLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFN 315
Query: 180 KLNGTVSEIHFV-NLTKLA--FFRANG----NSLIFKINPNWV 215
+S+I V +LTKL FF N +SL N NW+
Sbjct: 316 N----ISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWL 354
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 99/219 (45%), Gaps = 45/219 (20%)
Query: 6 FQGQIPS--RLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLG- 62
F QI L NLT+L L+LSSN ++ + LS + L+ LS SN+ V+ L
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQ----VTDLKP 168
Query: 63 LENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEI--LGIFSACVA 120
L NLT+++RL +S N K+ + L KLT+ +Q IS+I LGI +
Sbjct: 169 LANLTTLERLDISSN-----KV-SDISVLAKLTNLESLIATNNQ-ISDITPLGILT---- 217
Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFS---------LG--QIS 169
L+ L L +Q+ T L L LDL+N + P S LG QIS
Sbjct: 218 -NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 274
Query: 170 N---------LEYLDLSNNKLNGTVSEIHFVNLTKLAFF 199
N L L+L+ N+L + NLT L +
Sbjct: 275 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 313
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 43/285 (15%)
Query: 8 GQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLT 67
++PS L L++LK L LS+N+ + S L LS+ N + + + LENL
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 68 SIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLR 127
+++ L LS +D I TS C L + LS L+SL
Sbjct: 351 NLRELDLSHDD-----IETS--DCCNL-----QLRNLSH----------------LQSLN 382
Query: 128 LGSSQIFGHLTNQLRRFKRLNSLDLSNTIL---DGSIPFS---LGQISNLEY--LDLSNN 179
L ++ T + +L LDL+ T L D PF L ++ NL + LD+S+
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442
Query: 180 KLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 239
+L + + +NL F + N I K N + +L +L L C L
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGN----IQKTN-SLQTLGRLEILVLSFCDLSSIDQHAFT 497
Query: 240 SQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIP 284
S + +N +D+S R+++ S + YLN++ N I +P
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEAL--SHLKGIYLNLASNHISIILP 540
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 38/217 (17%)
Query: 106 QDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSL 165
+DIS +F +ES+ L F +N F L LDL+ T L +P L
Sbjct: 241 EDISP--AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGL 297
Query: 166 GQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFK---------------- 209
+S L+ L LS NK + +I N L GN+ +
Sbjct: 298 VGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356
Query: 210 -----INPNWVPPFQLTVL-ELRSCHLGPRFPLWLQSQR-----ELNDLDISSTRISAKI 258
I + QL L L+S +L PL L+++ +L LD++ TR+ K
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416
Query: 259 PRGFWNSIY-------QYFYLNISGNQIYGGIPKFDN 288
+ + +++ + L+IS Q++ G+P +
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 109/219 (49%), Gaps = 28/219 (12%)
Query: 2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSL 61
S NQ P L NLT+L+ LD+SSN+++ + L+K+ +LE L +N++ +++ L
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQI-SDITPL 213
Query: 62 GLENLTSIKRLYLSEND--ELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
G+ LT++ L L+ N ++G + L LT + ++S +++ + G+
Sbjct: 214 GI--LTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQIS-NLAPLSGLT---- 261
Query: 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
+L L+LG++QI + L L +L+L+ L+ P S + NL YL L N
Sbjct: 262 --KLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFN 315
Query: 180 KLNGTVSEIHFVNLTKLAFFR---ANGNSLIFKINPNWV 215
++ L +L F+ ++ +SL N NW+
Sbjct: 316 NISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 354
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 99/219 (45%), Gaps = 45/219 (20%)
Query: 6 FQGQIPS--RLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLG- 62
F QI L NLT+L L+LSSN ++ + LS + L+ L+ SN+ V+ L
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQ----VTDLKP 168
Query: 63 LENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEI--LGIFSACVA 120
L NLT+++RL +S N K+ + L KLT+ +Q IS+I LGI +
Sbjct: 169 LANLTTLERLDISSN-----KV-SDISVLAKLTNLESLIATNNQ-ISDITPLGILT---- 217
Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFS---------LG--QIS 169
L+ L L +Q+ T L L LDL+N + P S LG QIS
Sbjct: 218 -NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 274
Query: 170 N---------LEYLDLSNNKLNGTVSEIHFVNLTKLAFF 199
N L L+L+ N+L + NLT L +
Sbjct: 275 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 313
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 109/219 (49%), Gaps = 28/219 (12%)
Query: 2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSL 61
S NQ P L NLT+L+ LD+SSN+++ + L+K+ +LE L +N++ +++ L
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQI-SDITPL 213
Query: 62 GLENLTSIKRLYLSEND--ELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
G+ LT++ L L+ N ++G + L LT + ++S +++ + G+
Sbjct: 214 GI--LTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQIS-NLAPLSGL----- 260
Query: 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
+L L+LG++QI + L L +L+L+ L+ P S + NL YL L N
Sbjct: 261 -TKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFN 315
Query: 180 KLNGTVSEIHFVNLTKLAFFR---ANGNSLIFKINPNWV 215
++ L +L F+ ++ +SL N NW+
Sbjct: 316 NISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 354
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 99/219 (45%), Gaps = 45/219 (20%)
Query: 6 FQGQIPS--RLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLG- 62
F QI L NLT+L L+LSSN ++ + LS + L+ LS SN+ V+ L
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQ----VTDLKP 168
Query: 63 LENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEI--LGIFSACVA 120
L NLT+++RL +S N K+ + L KLT+ +Q IS+I LGI +
Sbjct: 169 LANLTTLERLDISSN-----KV-SDISVLAKLTNLESLIATNNQ-ISDITPLGILT---- 217
Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFS---------LG--QIS 169
L+ L L +Q+ T L L LDL+N + P S LG QIS
Sbjct: 218 -NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 274
Query: 170 N---------LEYLDLSNNKLNGTVSEIHFVNLTKLAFF 199
N L L+L+ N+L + NLT L +
Sbjct: 275 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 313
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 12 SRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKR 71
S L LT+L YL L+ N+L S G K+ +L+ L + N+LQ + + LT++
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV-FDKLTNLTY 137
Query: 72 LYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSS 131
L L+ N +L F KL LT + + +L Q + E G+F +L+ LRL +
Sbjct: 138 LNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQL-QSLPE--GVFDKLT--QLKDLRLYQN 191
Query: 132 QI 133
Q+
Sbjct: 192 QL 193
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
L+ NQ Q LT+L LDLS N+L S G K+ L+ L +Y N+L+ V
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPD 198
Query: 61 LGLENLTSIKRLYLSEN 77
+ LTS++ ++L +N
Sbjct: 199 GVFDRLTSLQYIWLHDN 215
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
L+GNQ Q LT+LK L L N+L S G K+ +L +L++ N+LQ
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151
Query: 61 LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLS 105
+ + LT++ L LS N +L F KL +L + +L
Sbjct: 152 V-FDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLK 194
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 117/485 (24%), Positives = 182/485 (37%), Gaps = 125/485 (25%)
Query: 9 QIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDL----------------------EF 46
++P NLT+L++LDLSSN++ S L ++ + +
Sbjct: 164 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 223
Query: 47 LSVYSNRLQGNVSSL--------GLENLTSIKRLYLSE---NDELGGKIPTSFGKLCKLT 95
+ ++ L+ N SL GL L + RL L E L ++ LC LT
Sbjct: 224 IRLHKLTLRNNFDSLNVMKTCIQGLAGL-EVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282
Query: 96 SFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQI---------FG--HLTNQLRRF 144
R L + I+ +F+ C+ N + S L S I FG HL +F
Sbjct: 283 IEEFRLAYLDYYLDGIIDLFN-CLTN-VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 340
Query: 145 KRLNSLDLSN------TILDGSIPFSLGQISNLEYLDLSNNKLN--GTVSEIHFVNLTKL 196
+ +L L + T G FS + +LE+LDLS N L+ G S+ F ++ L
Sbjct: 341 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS-L 399
Query: 197 AFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLG--PRFPLWLQSQRELNDLDISSTRI 254
+ + N +I ++ N++ QL L+ + +L F ++L S R L LDIS T
Sbjct: 400 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHT 457
Query: 255 SAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSG 314
G +N + L ++GN F +P I T
Sbjct: 458 RVAF-NGIFNGLSSLEVLKMAGN-------SFQENFLPDIFTEL---------------- 493
Query: 315 SIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNF--TGSLPMXX 372
N+ FL LS+ P + + L+ LN+ HNNF + P
Sbjct: 494 -------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--- 537
Query: 373 XXXXXXXXXXXXXXXXXXXXPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNL 432
+K +SL+VLD N ++ S + S L LNL
Sbjct: 538 -----------------------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574
Query: 433 RSNKF 437
N F
Sbjct: 575 TQNDF 579
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 514 YNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG-RIPDNIGVMRSIESL 572
++ + +L + + V N+ S E + +L+ L+ LN++HNL+ ++P+ + ++E L
Sbjct: 120 FSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178
Query: 573 DLSANQL 579
DLS+N++
Sbjct: 179 DLSSNKI 185
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
L GN+ Q LTSL YL+LS+N+L S G K+ L+ L++ +N+LQ
Sbjct: 59 LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG 118
Query: 61 LGLENLTSIKRLYLSEN 77
+ + LT +K L L +N
Sbjct: 119 V-FDKLTQLKDLRLYQN 134
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
LS NQ Q LT LK L L++N+L S G K+ L+ L +Y N+L+ +V
Sbjct: 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPD 141
Query: 61 LGLENLTSIKRLYLSEN 77
+ LTS++ ++L +N
Sbjct: 142 GVFDRLTSLQYIWLHDN 158
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 7 QGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENL 66
QG+ G YLDL +N L S G ++ L L + N+LQ + + L
Sbjct: 17 QGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV-FNKL 75
Query: 67 TSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESL 126
TS+ L LS N +L F KL +L ++ +L Q + + G+F +L+ L
Sbjct: 76 TSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQL-QSLPD--GVFDK--LTQLKDL 129
Query: 127 RLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTV 185
RL +Q+ R L + L + D + P + YL NK +G V
Sbjct: 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVV 181
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 135/323 (41%), Gaps = 61/323 (18%)
Query: 9 QIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDL----------------------EF 46
++P NLT+L++LDLSSN++ S L ++ + +
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 47 LSVYSNRLQGNVSSL--------GLENLTSIKRLYLSE---NDELGGKIPTSFGKLCKLT 95
+ ++ L+ N SL GL L + RL L E L ++ LC LT
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGL-EVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 96 SFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQI---------FG--HLTNQLRRF 144
R L + +I+ +F+ C+ N + S L S I FG HL +F
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFN-CLTN-VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316
Query: 145 KRLNSLDLSN------TILDGSIPFSLGQISNLEYLDLSNNKLN--GTVSEIHFVNLTKL 196
+ +L L + T G FS + +LE+LDLS N L+ G S+ F T L
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSL 375
Query: 197 AFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLG--PRFPLWLQSQRELNDLDISSTRI 254
+ + N +I ++ N++ QL L+ + +L F ++L S R L LDIS T
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHT 433
Query: 255 SAKIPRGFWNSIYQYFYLNISGN 277
G +N + L ++GN
Sbjct: 434 RVAF-NGIFNGLSSLEVLKMAGN 455
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 393 PTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP 442
PT+F + SSL+VL++ N+L S+P I +R + L+ + L +N + P
Sbjct: 487 PTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 510 VLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG-RIPDNIGVMRS 568
L ++ + +L + + V N+ S E + +L+ L+ LN++HNL+ ++P+ + +
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 569 IESLDLSANQL 579
+E LDLS+N++
Sbjct: 151 LEHLDLSSNKI 161
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 4 NQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGL 63
NQ P +LT L YL+L+ N+L + +G K+ L L+++ N+L+ ++
Sbjct: 50 NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-SIPMGVF 108
Query: 64 ENLTSIKRLYLSEN 77
+NL S+ +YL N
Sbjct: 109 DNLKSLTHIYLFNN 122
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 20 LKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSEN 77
L+YLDLSSN L++ S + LE L +Y+N + V E++ +++LYLS+N
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQN 146
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 93/229 (40%), Gaps = 66/229 (28%)
Query: 9 QIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLS------------------VY 50
++P+ NLT+L ++DLS N + + VNDL+FL +
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTIT------VNDLQFLRENPQVNLSLDMSLNPIDFIQ 197
Query: 51 SNRLQG---------------NVSSLGLENLT--SIKRLYLSE-NDELGGKI--PTSFGK 90
QG N+ L+NL + RL L E DE +I P+
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257
Query: 91 LCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFK----- 145
LC +T R T + D S+ + F C+AN + ++ L I +L + + FK
Sbjct: 258 LCDVTIDEFRLT-YTNDFSDDIVKFH-CLAN-VSAMSLAGVSI-KYLEDVPKHFKWQSLS 313
Query: 146 -------RLNSLDL------SNTILDGSIPFSLGQISNLEYLDLSNNKL 181
+ +LDL + T+ GSI F + +L YLDLS N L
Sbjct: 314 IIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL 362
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 133/317 (41%), Gaps = 64/317 (20%)
Query: 10 IPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLG-----LE 64
+PS + + SLK L L++N + L ++N F S+ ++GN+ L LE
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQ-----LCQINAASFPSLRDLYIKGNMRKLDLGTRCLE 346
Query: 65 NLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTK-LSQDISEILGI----FSACV 119
L ++++L LS +D C L ++R + L+ +E LG+ F C
Sbjct: 347 KLENLQKLDLSHSD-------IEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECP 399
Query: 120 ANELESLRLGSSQIFGHLTNQLRRFKRLN---SLDLSNTILDGSIPFSLGQISNLEYLDL 176
+LE L + + + H+ F+ L+ L+LS+ +LD S L + +L +L+L
Sbjct: 400 --QLELLDVAFTHL--HVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNL 455
Query: 177 SNNKL-NGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFP 235
N +G++S+ + + + L +L L SC+L
Sbjct: 456 QGNSFQDGSISKTNLLQMVG-----------------------SLEILILSSCNLLSIDQ 492
Query: 236 LWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLIT 295
R +N LD+S ++ S + YLN++ N I P +P ++
Sbjct: 493 QAFHGLRNVNHLDLSHNSLTGDSMDAL--SHLKGLYLNMASNNIRIIPPHL----LPALS 546
Query: 296 TPSDLLGPIFDLSNNAL 312
S I +LS+N L
Sbjct: 547 QQS-----IINLSHNPL 558
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 169 SNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLE--LR 226
+ ++ LDL+ LNG S I +N K AN + +IN P + ++ +R
Sbjct: 277 TRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMR 336
Query: 227 SCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFW-NSIYQYFYLNISGNQIYG 281
LG R L+ L LD+S + I A ++ YLN+S N+ G
Sbjct: 337 KLDLGTR---CLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLG 389
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 93/229 (40%), Gaps = 66/229 (28%)
Query: 9 QIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLS------------------VY 50
++P+ NLT+L ++DLS N + + VNDL+FL +
Sbjct: 139 KLPAYFSNLTNLVHVDLSYNYIQTIT------VNDLQFLRENPQVNLSLDMSLNPIDFIQ 192
Query: 51 SNRLQG---------------NVSSLGLENLT--SIKRLYLSE-NDELGGKI--PTSFGK 90
QG N+ L+NL + RL L E DE +I P+
Sbjct: 193 DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 252
Query: 91 LCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFK----- 145
LC +T R T + D S+ + F C+AN + ++ L I +L + + FK
Sbjct: 253 LCDVTIDEFRLT-YTNDFSDDIVKFH-CLAN-VSAMSLAGVSI-KYLEDVPKHFKWQSLS 308
Query: 146 -------RLNSLDL------SNTILDGSIPFSLGQISNLEYLDLSNNKL 181
+ +LDL + T+ GSI F + +L YLDLS N L
Sbjct: 309 IIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL 357
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQ 55
L GNQ + LT LK L L++N+L S G K+ +L+ LS+ +N+LQ
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 4 NQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGL 63
NQ Q +LT L L L++N+L S LG + L+ L + N+L+ S +
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV-F 127
Query: 64 ENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKL 104
+ LT +K L L+ N +L +F KL L + S+ +L
Sbjct: 128 DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 36/145 (24%)
Query: 87 SFGKLCKLTSFSMRFTKLS-------QDISEI--LGIFSACVANELESLRLGSSQIFGHL 137
+F L KLT ++ + +L D++E+ LG+ N+L SL LG +F HL
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL----ANNQLASLPLG---VFDHL 106
Query: 138 T---------NQLR--------RFKRLNSLDLSNTILDGSIPF-SLGQISNLEYLDLSNN 179
T NQL+ R +L L L+ L SIP + +++NL+ L LS N
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTN 165
Query: 180 KLNGTVSEIHFVNLTKLAFFRANGN 204
+L +V F L KL GN
Sbjct: 166 QLQ-SVPHGAFDRLGKLQTITLFGN 189
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNR 53
L+ NQ Q LT+L+ L LS+N+L S G ++ L+ ++++ N+
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQ 55
L GNQ + LT LK L L++N+L S G K+ +L+ LS+ +N+LQ
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 4 NQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGL 63
NQ Q +LT L L L++N+L S LG + L+ L + N+L+ S +
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV-F 127
Query: 64 ENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKL 104
+ LT +K L L+ N +L +F KL L + S+ +L
Sbjct: 128 DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 36/145 (24%)
Query: 87 SFGKLCKLTSFSMRFTKLS-------QDISEI--LGIFSACVANELESLRLGSSQIFGHL 137
+F L KLT ++ + +L D++E+ LG+ N+L SL LG +F HL
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL----ANNQLASLPLG---VFDHL 106
Query: 138 T---------NQLR--------RFKRLNSLDLSNTILDGSIPF-SLGQISNLEYLDLSNN 179
T NQL+ R +L L L+ L SIP + +++NL+ L LS N
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTN 165
Query: 180 KLNGTVSEIHFVNLTKLAFFRANGN 204
+L +V F L KL GN
Sbjct: 166 QLQ-SVPHGAFDRLGKLQTITLFGN 189
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNR 53
L+ NQ Q LT+L+ L LS+N+L S G ++ L+ ++++ N+
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 29/215 (13%)
Query: 25 LSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKI 84
L N ++ +L L ++SN L G + + LT +++L LS+N +L
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVD 96
Query: 85 PTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA--------NELESLRLGSSQIFGH 136
PT+F L L + + L Q++ G+F A N L++L + + G+
Sbjct: 97 PTTFRGLGHLHTLHLDRCGL-QELGP--GLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 137 LTNQL-----------RRFKRLNSLD---LSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182
LT+ F+ L+SLD L + P + + L L L N L+
Sbjct: 154 LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Query: 183 GTVSEIHFVNLTKLAFFRANGNSLI--FKINPNWV 215
+E+ V L L + R N N + + P W
Sbjct: 214 MLPAEV-LVPLRSLQYLRLNDNPWVCDCRARPLWA 247
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 22/163 (13%)
Query: 11 PSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIK 70
P L +L+YL L N L + + +L L ++ NR+ +V L S+
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP-SVPEHAFRGLHSLD 179
Query: 71 RLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSA------------- 117
RL L +N + P +F L +L + + LS +E+L +
Sbjct: 180 RLLLHQN-HVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVC 238
Query: 118 -CVANE----LESLRLGSSQIFGHLTNQL--RRFKRLNSLDLS 153
C A L+ R SS++ +L +L R KRL + DL
Sbjct: 239 DCRARPLWAWLQKFRGSSSEVPCNLPQRLAGRDLKRLAASDLE 281
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 22/162 (13%)
Query: 11 PSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIK 70
P L +L+YL L N L + + +L L ++ NR+ +V L S+
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLD 180
Query: 71 RLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSA------------- 117
RL L +N + P +F L +L + + LS +E L A
Sbjct: 181 RLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239
Query: 118 -CVANE----LESLRLGSSQIFGHLTNQL--RRFKRLNSLDL 152
C A L+ R SS++ L +L R KRL + DL
Sbjct: 240 DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL 281
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 22/162 (13%)
Query: 11 PSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIK 70
P L +L+YL L N L + + +L L ++ NR+ +V L S+
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLD 179
Query: 71 RLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSA------------- 117
RL L +N + P +F L +L + + LS +E L A
Sbjct: 180 RLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 238
Query: 118 -CVANE----LESLRLGSSQIFGHLTNQL--RRFKRLNSLDL 152
C A L+ R SS++ L +L R KRL + DL
Sbjct: 239 DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL 280
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
L+ NQ P +L +L+ L +SN+L + G K+ L L + N L+ ++
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPR 98
Query: 61 LGLENLTSIKRLYLSEN 77
+NL S+ +YL N
Sbjct: 99 GAFDNLKSLTHIYLYNN 115
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 75/199 (37%), Gaps = 17/199 (8%)
Query: 123 LESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182
L +L L +++ T +L L L N ++ ++ ++ +L LDL K
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRL 144
Query: 183 GTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQR 242
+SE F L L + N K PN +L LEL L P Q
Sbjct: 145 EYISEAAFEGLVNLRYL--NLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLT 202
Query: 243 ELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLG 302
L L + ++ A I R ++ + LN+S N L++ P DL
Sbjct: 203 SLRKLWLMHAQV-ATIERNAFDDLKSLEELNLSHNN--------------LMSLPHDLFT 247
Query: 303 PIFDLSNNALSGSIFHLIC 321
P+ L L+ + +H C
Sbjct: 248 PLHRLERVHLNHNPWHCNC 266
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 26/147 (17%)
Query: 329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXX 388
N + L L N + P + + + L+ L LG N G+LP+
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV---------------- 83
Query: 389 XXXXPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGL 448
F + + L VLDLG N+L +PS + +R LK L + NK + P + L
Sbjct: 84 -------FDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERL 134
Query: 449 AFLQILDVASNSLSGTIPRCINNLSAM 475
L L + N L + LS++
Sbjct: 135 THLTHLALDQNQLKSIPHGAFDRLSSL 161
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
L NQ P +L +LK L L SN+L + +G + L L + +N+L S+
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106
Query: 61 LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKL 104
+ + L +K L++ N ++P +L LT ++ +L
Sbjct: 107 V-FDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQL 147
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 44 LEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFT 102
L+FL +Y + G + LGL+N L++ ++D LG +PT +LT M FT
Sbjct: 13 LQFLGLY--KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 69
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 75/199 (37%), Gaps = 17/199 (8%)
Query: 123 LESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182
L +L L +++ T +L L L N ++ ++ ++ +L LDL K
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRL 144
Query: 183 GTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQR 242
+SE F L L + N K PN +L LEL L P Q
Sbjct: 145 EYISEAAFEGLVNLRYL--NLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLT 202
Query: 243 ELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLG 302
L L + ++ A I R ++ + LN+S N L++ P DL
Sbjct: 203 SLRKLWLMHAQV-ATIERNAFDDLKSLEELNLSHNN--------------LMSLPHDLFT 247
Query: 303 PIFDLSNNALSGSIFHLIC 321
P+ L L+ + +H C
Sbjct: 248 PLHRLERVHLNHNPWHCNC 266
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 510 VLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG-RIPDNIGVMRS 568
L ++ + +L + + V N+ S E + +L+ L+ LN++HNL+ ++P+ + +
Sbjct: 93 ALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 569 IESLDLSANQL 579
+E LDLS+N++
Sbjct: 152 LEHLDLSSNKI 162
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 44 LEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFT 102
L+FL +Y + G + LGL+N L++ ++D LG +PT +LT M FT
Sbjct: 16 LQFLGLY--KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 72
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 44 LEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFT 102
L+FL +Y + G + LGL+N L++ ++D LG +PT +LT M FT
Sbjct: 7 LQFLGLY--KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 63
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 510 VLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG-RIPDNIGVMRS 568
L ++ + +L + + V N+ S E + +L+ L+ LN++HNL+ ++P+ + +
Sbjct: 94 ALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 152
Query: 569 IESLDLSANQL 579
+E LDLS+N++
Sbjct: 153 LEHLDLSSNKI 163
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 44 LEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFT 102
L+FL +Y + G + LGL+N L++ ++D LG +PT +LT M FT
Sbjct: 26 LQFLGLY--KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 82
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 510 VLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG-RIPDNIGVMRS 568
L ++ + +L + + V N+ S E + +L+ L+ LN++HNL+ ++P+ + +
Sbjct: 93 ALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 569 IESLDLSANQL 579
+E LDLS+N++
Sbjct: 152 LEHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 510 VLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG-RIPDNIGVMRS 568
L ++ + +L + + V N+ S E + +L+ L+ LN++HNL+ ++P+ + +
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 569 IESLDLSANQL 579
+E LDLS+N++
Sbjct: 151 LEHLDLSSNKI 161
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
L NQ P LT L LDL +N+L G K+ L LS+ N+L+ ++
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPR 95
Query: 61 LGLENLTSIKRLYLSEN 77
+NL S+ ++L N
Sbjct: 96 GAFDNLKSLTHIWLLNN 112
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
L NQ P LT L LDL +N+L G K+ L LS+ N+L+ ++
Sbjct: 45 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPR 103
Query: 61 LGLENLTSIKRLYLSEN 77
+NL S+ ++L N
Sbjct: 104 GAFDNLKSLTHIWLLNN 120
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 539 VTNLQGLQSLNLSHNLLTG-RIPDNIGVMRSIESLDLSANQL 579
+ +L+ L+ LN++HNL+ ++P+ + ++E LDLS+N++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 51/227 (22%)
Query: 17 LTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSE 76
LT+L+YL+L+ N++ T + LS + L L + +N++ ++S+L +NLT+++ LYL+E
Sbjct: 65 LTNLEYLNLNGNQI--TDISPLSNLVKLTNLYIGTNKIT-DISAL--QNLTNLRELYLNE 119
Query: 77 NDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEI--------LGIFSACVAN------- 121
D + P L K S ++ D+S + L + + V +
Sbjct: 120 -DNISDISP--LANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANL 176
Query: 122 -ELESLRLGSSQI--------------FGHLTNQLRRF------KRLNSLDLSNTILDGS 160
+L SL L +QI F NQ+ RLNSL + N +
Sbjct: 177 TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDL 236
Query: 161 IPFSLGQISNLEYLDLSNNKLNGTVSEIHFV-NLTKLAFFRANGNSL 206
P L +S L +L++ N+ +S+I+ V +LTKL N +
Sbjct: 237 SP--LANLSQLTWLEIGTNQ----ISDINAVKDLTKLKXLNVGSNQI 277
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 534 EIPVEVTNLQGLQSLNLSHNLLTGRIPDNIG 564
E+P E+ NL L+ L+LSHN LT +P +G
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELG 290
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 393 PTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQ 452
P KN S+L VLDL N L S+P+ +G F LK N P + L LQ
Sbjct: 263 PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ-LKYFYFFDNMV-TTLPWEFGNLCNLQ 319
Query: 453 ILDVASNSLSGTIPRCINNLSAMAI 477
L V N L + + S +
Sbjct: 320 FLGVEGNPLEKQFLKILTEKSVTGL 344
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
LS NQ Q LT L L L N+L S G K+ L+ L++ +N+L+ +V
Sbjct: 59 LSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPD 117
Query: 61 LGLENLTSIKRLYLSEN 77
+ LTS+++++L N
Sbjct: 118 GIFDRLTSLQKIWLHTN 134
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 86 TSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFK 145
T L K+T + L +++S I G+ S +++L L S+QI L
Sbjct: 85 TPLKNLTKITELELSGNPL-KNVSAIAGLQS------IKTLDLTSTQITD--VTPLAGLS 135
Query: 146 RLNSLDLS-NTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGN 204
L L L N I + S L ++NL+YL + NN++N NL+KL RA+ N
Sbjct: 136 NLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNNQVNDLTP---LANLSKLTTLRADDN 189
Query: 205 SLIFKINP 212
I I+P
Sbjct: 190 K-ISDISP 196
>pdb|1KXH|A Chain A, Crystal Structure Of The Complex Between An Inactive
Mutant Of Psychrophilic Alpha-Amylase (D174n) And
Acarbose
Length = 448
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 441 FPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAI 477
+ +Q C L L LD ASN + TI IN+L A+ +
Sbjct: 132 YRVQNCELVGLADLDTASNYVQNTIAAYINDLQAIGV 168
>pdb|1G94|A Chain A, Crystal Structure Analysis Of The Ternary Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis In Complex With A Hepta-Saccharide And A
Tris Molecule
pdb|1G9H|A Chain A, Ternary Complex Between Psychrophilic Alpha-Amylase, Comii
(Pseudo Tri-Saccharide From Bayer) And Tris (2-Amino-2-
Hydroxymethyl-Propane-1,3-Diol)
pdb|1L0P|A Chain A, Crystal Structure Analysis Of The Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis And Nitrate
Length = 448
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 441 FPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAI 477
+ +Q C L L LD ASN + TI IN+L A+ +
Sbjct: 132 YRVQNCELVGLADLDTASNYVQNTIAAYINDLQAIGV 168
>pdb|1JD7|A Chain A, Crystal Structure Analysis Of The Mutant K300r Of
Pseudoalteromonas Haloplanctis Alpha-Amylase
Length = 453
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 441 FPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAI 477
+ +Q C L L LD ASN + TI IN+L A+ +
Sbjct: 132 YRVQNCELVGLADLDTASNYVQNTIAAYINDLQAIGV 168
>pdb|1JD9|A Chain A, Crystal Structure Analysis Of The Mutant K300q Of
Pseudoalteromonas Haloplanctis Alpha-amylase
Length = 453
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 441 FPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAI 477
+ +Q C L L LD ASN + TI IN+L A+ +
Sbjct: 132 YRVQNCELVGLADLDTASNYVQNTIAAYINDLQAIGV 168
>pdb|1B0I|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
pdb|1AQH|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
pdb|1AQM|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis Complexed With
Tris
Length = 453
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 441 FPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAI 477
+ +Q C L L LD ASN + TI IN+L A+ +
Sbjct: 132 YRVQNCELVGLADLDTASNYVQNTIAAYINDLQAIGV 168
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 393 PTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQ 452
PT+F +S L +LD G N + P + + +LK+LNL+ N+ L
Sbjct: 42 PTNFTRYSQLAILDAGFNSISKLEPE-LCQILPLLKVLNLQHNELSQISDQTFVFCTNLT 100
Query: 453 ILDVASNSL 461
LD+ SNS+
Sbjct: 101 ELDLMSNSI 109
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 16 NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQG-NVSSLGLENLTSIKRLYL 74
+L SL++LDLS N L+S W ++ L++L++ N Q V+SL NLT+++ L +
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRI 130
Query: 75 SENDELGGKIPTSFGKLCKLTSFSMR 100
+ F L L ++
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIK 156
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 395 SFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFH 438
+F + SLE LDL +N L SW G S LK LNL N +
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGP-LSSLKYLNLMGNPYQ 111
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 9 QIPSRL-GNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLT 67
++PS L +L +L+ ++ SN+L G K+ L+ L++ SN+L+ +V + LT
Sbjct: 160 EMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLK-SVPDGIFDRLT 218
Query: 68 SIKRLYLSEN 77
S+++++L N
Sbjct: 219 SLQKIWLHTN 228
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 16 NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQG-NVSSLGLENLTSIKRLYL 74
+L SL++LDLS N L+S W ++ L++L++ N Q V+SL NLT+++ L +
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRI 156
Query: 75 SENDELGGKIPTSFGKLCKLTSFSMR 100
+ F L L ++
Sbjct: 157 GNVETFSEIRRIDFAGLTSLNELEIK 182
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 395 SFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFH 438
+F + SLE LDL +N L SW G S LK LNL N +
Sbjct: 95 AFYSLGSLEHLDLSDNHLSSLSSSWFGP-LSSLKYLNLMGNPYQ 137
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 36/137 (26%)
Query: 151 DLSNTILDGS----IPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSL 206
D++ LDG+ +P L +L +DLSNN+++ T+S F N+T+L + N L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL 90
Query: 207 IFKINPNWVPPFQ---LTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFW 263
+PP L L L S H ND+ + +P G +
Sbjct: 91 ------RCIPPRTFDGLKSLRLLSLH--------------GNDISV--------VPEGAF 122
Query: 264 NSIYQYFYLNISGNQIY 280
N + +L I N +Y
Sbjct: 123 NDLSALSHLAIGANPLY 139
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
L GNQF +P L N L +DLS+N +++ S + L L + NRL+ +
Sbjct: 38 LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPP 95
Query: 61 LGLENLTSIKRLYLSEND 78
+ L S++ L L ND
Sbjct: 96 RTFDGLKSLRLLSLHGND 113
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 521 VRSIDVSKNIFSGE--IPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQ 578
++++D+S N +++ NL LQ+LNLSHN G +E LDL+ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 579 LSGQIPQ 585
L PQ
Sbjct: 409 LHINAPQ 415
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
L N+ P LT L LDL +N+L G K+ L LS+ N+L+ ++
Sbjct: 37 LYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPR 95
Query: 61 LGLENLTSIKRLYLSEN 77
+NL S+ ++L N
Sbjct: 96 GAFDNLRSLTHIWLLNN 112
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 484 AVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSI----LNLVRSIDVSKNIFSGEIPVEV 539
+I S S Q+ + D + + KG NSI V+S+D+S N + ++
Sbjct: 13 VIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDL 72
Query: 540 TNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLS 580
LQ+L L+ N + D+ + S+E LDLS N LS
Sbjct: 73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 17/164 (10%)
Query: 144 FKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANG 203
+L L L N ++ ++ +I +L LDL K +SE F L+ L +
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194
Query: 204 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFW 263
+L + PN P +L L+L HL P Q L L + ++I I R +
Sbjct: 195 CNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAF 251
Query: 264 NSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDL 307
+++ +N++ N L P DL P+ L
Sbjct: 252 DNLQSLVEINLAHNN--------------LTLLPHDLFTPLHHL 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,569,491
Number of Sequences: 62578
Number of extensions: 701263
Number of successful extensions: 2083
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1400
Number of HSP's gapped (non-prelim): 422
length of query: 743
length of database: 14,973,337
effective HSP length: 106
effective length of query: 637
effective length of database: 8,340,069
effective search space: 5312623953
effective search space used: 5312623953
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)