Query 041683
Match_columns 743
No_of_seqs 754 out of 4310
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:36:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.8E-65 3.9E-70 610.7 40.6 541 19-630 70-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.2E-59 1.6E-63 554.1 40.8 516 41-628 68-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.2E-41 9.2E-46 338.1 7.9 377 122-607 79-455 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.4E-40 9.6E-45 330.8 6.3 389 21-458 55-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4E-41 8.7E-46 324.0 -18.8 481 1-580 52-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1E-39 2.2E-44 314.4 -13.0 477 18-604 45-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 9.4E-37 2E-41 323.3 -6.3 465 44-603 23-488 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.7E-36 3.6E-41 321.5 -5.9 462 19-601 46-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.3E-33 5E-38 284.3 -1.8 275 233-598 117-393 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.3E-33 5E-38 284.3 -3.9 372 15-442 4-379 (1255)
11 PLN03210 Resistant to P. syrin 99.9 2E-22 4.3E-27 240.8 26.7 159 85-278 551-715 (1153)
12 KOG4237 Extracellular matrix p 99.9 3.5E-26 7.5E-31 221.1 -5.2 246 1-254 74-358 (498)
13 KOG4237 Extracellular matrix p 99.9 9.2E-26 2E-30 218.2 -4.0 412 122-601 68-498 (498)
14 PLN03210 Resistant to P. syrin 99.9 1.5E-21 3.3E-26 233.2 25.7 341 10-411 550-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 9.5E-21 2.1E-25 209.4 17.5 261 220-609 203-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 5.5E-20 1.2E-24 203.4 17.3 277 114-474 194-470 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.6E-18 3.4E-23 193.4 13.1 76 377-462 326-401 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.5E-18 5.5E-23 191.8 12.9 204 329-604 221-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-19 4.5E-24 187.2 0.9 84 520-603 222-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.3E-18 7.1E-23 178.1 4.5 271 2-278 6-318 (319)
21 KOG0617 Ras suppressor protein 99.7 2E-18 4.4E-23 148.2 -3.7 129 327-460 32-161 (264)
22 KOG0617 Ras suppressor protein 99.7 1.4E-18 3.1E-23 149.2 -5.3 84 375-462 32-115 (264)
23 PLN03150 hypothetical protein; 99.6 1.3E-14 2.9E-19 161.8 11.2 116 520-635 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 5.4E-14 1.2E-18 143.5 -4.3 195 351-602 74-271 (722)
25 KOG0532 Leucine-rich repeat (L 99.2 1.5E-13 3.2E-18 140.3 -6.1 193 329-578 76-271 (722)
26 COG4886 Leucine-rich repeat (L 99.2 1.6E-11 3.4E-16 131.6 7.7 85 522-610 212-296 (394)
27 PLN03150 hypothetical protein; 99.2 3.1E-11 6.7E-16 135.0 10.1 114 450-609 419-533 (623)
28 KOG1259 Nischarin, modulator o 99.2 7.3E-12 1.6E-16 118.0 1.9 221 326-606 180-414 (490)
29 KOG3207 Beta-tubulin folding c 99.1 8.2E-12 1.8E-16 124.0 0.4 86 521-606 248-341 (505)
30 COG4886 Leucine-rich repeat (L 99.1 1.8E-10 3.8E-15 123.5 8.0 201 332-588 97-298 (394)
31 KOG1909 Ran GTPase-activating 99.1 4.1E-12 8.8E-17 122.8 -4.2 136 327-462 156-311 (382)
32 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.5E-16 121.9 -0.7 231 305-582 98-341 (505)
33 KOG1259 Nischarin, modulator o 99.1 4E-11 8.6E-16 113.1 1.5 224 16-256 180-413 (490)
34 PF14580 LRR_9: Leucine-rich r 99.0 1.3E-10 2.8E-15 105.8 4.0 105 329-438 20-126 (175)
35 KOG1909 Ran GTPase-activating 99.0 1E-10 2.2E-15 113.2 2.3 191 88-279 88-310 (382)
36 PF14580 LRR_9: Leucine-rich r 99.0 9.7E-10 2.1E-14 100.1 6.7 111 348-463 15-127 (175)
37 PF13855 LRR_8: Leucine rich r 98.9 8.5E-10 1.8E-14 82.5 3.1 59 544-602 2-60 (61)
38 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.6E-14 80.9 4.1 61 519-579 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.9 2.6E-10 5.6E-15 122.2 -1.3 128 327-462 71-199 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.8 7.4E-09 1.6E-13 118.4 8.0 132 15-156 520-653 (889)
41 KOG0531 Protein phosphatase 1, 98.8 2.1E-09 4.5E-14 115.2 1.7 225 325-608 92-322 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.6 2.7E-08 5.8E-13 113.9 5.5 131 41-180 522-653 (889)
43 KOG2120 SCF ubiquitin ligase, 98.6 1.4E-09 2.9E-14 102.9 -4.3 180 19-204 186-373 (419)
44 KOG1859 Leucine-rich repeat pr 98.6 2.5E-09 5.4E-14 112.8 -4.3 107 518-630 186-295 (1096)
45 KOG1859 Leucine-rich repeat pr 98.6 1.7E-09 3.7E-14 114.1 -6.2 181 369-606 102-294 (1096)
46 KOG4579 Leucine-rich repeat (L 98.3 4.7E-08 1E-12 81.8 -2.3 87 521-610 79-165 (177)
47 KOG2120 SCF ubiquitin ligase, 98.3 2.4E-08 5.2E-13 94.7 -5.6 85 354-438 187-273 (419)
48 KOG4579 Leucine-rich repeat (L 98.2 1E-07 2.3E-12 79.8 -2.7 63 398-462 51-113 (177)
49 KOG2982 Uncharacterized conser 98.2 2.7E-07 5.9E-12 87.7 -0.7 82 518-599 198-287 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.2 1.8E-07 3.9E-12 87.6 -1.8 62 328-389 185-255 (388)
51 COG5238 RNA1 Ran GTPase-activa 98.1 9.6E-07 2.1E-11 82.9 1.1 217 40-280 28-285 (388)
52 KOG2982 Uncharacterized conser 98.0 1.1E-06 2.4E-11 83.6 0.3 212 17-256 44-263 (418)
53 PRK15386 type III secretion pr 97.9 4.3E-05 9.4E-10 78.6 9.1 76 372-461 48-124 (426)
54 PF12799 LRR_4: Leucine Rich r 97.9 6.6E-06 1.4E-10 56.0 2.1 35 545-580 3-37 (44)
55 KOG1644 U2-associated snRNP A' 97.8 4.4E-05 9.5E-10 69.0 6.1 104 353-459 43-150 (233)
56 PF12799 LRR_4: Leucine Rich r 97.8 2.9E-05 6.3E-10 52.8 3.7 36 146-182 2-37 (44)
57 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.4E-09 66.6 5.3 85 122-208 43-127 (233)
58 PF13306 LRR_5: Leucine rich r 97.6 0.00018 4E-09 63.2 6.9 86 11-101 5-90 (129)
59 PF13306 LRR_5: Leucine rich r 97.6 0.00021 4.5E-09 62.9 7.0 120 325-451 9-128 (129)
60 PRK15386 type III secretion pr 97.5 0.00035 7.7E-09 72.1 8.2 92 348-458 48-141 (426)
61 KOG3665 ZYG-1-like serine/thre 97.5 6.9E-05 1.5E-09 84.1 3.2 186 16-209 58-265 (699)
62 KOG3665 ZYG-1-like serine/thre 97.4 5.4E-05 1.2E-09 84.9 1.8 127 144-273 147-281 (699)
63 KOG4341 F-box protein containi 97.2 4.5E-05 9.7E-10 76.5 -2.3 81 350-430 370-457 (483)
64 KOG4341 F-box protein containi 97.0 4.2E-05 9E-10 76.8 -4.2 300 122-456 139-459 (483)
65 KOG2739 Leucine-rich acidic nu 96.7 0.001 2.2E-08 63.2 2.4 61 351-413 42-104 (260)
66 KOG2123 Uncharacterized conser 96.6 9.3E-05 2E-09 70.2 -4.7 101 327-431 18-123 (388)
67 KOG2739 Leucine-rich acidic nu 96.5 0.0017 3.7E-08 61.8 2.7 57 122-178 92-152 (260)
68 KOG2123 Uncharacterized conser 96.2 0.0002 4.3E-09 68.0 -5.0 83 17-105 18-101 (388)
69 KOG1947 Leucine rich repeat pr 95.6 0.003 6.5E-08 69.8 -0.4 59 122-180 244-306 (482)
70 KOG1947 Leucine rich repeat pr 95.5 0.0033 7.3E-08 69.5 -0.1 112 41-157 187-307 (482)
71 PF00560 LRR_1: Leucine Rich R 95.2 0.0071 1.5E-07 34.0 0.6 11 546-556 3-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.1 0.0083 1.8E-07 33.7 0.6 21 568-589 1-21 (22)
73 KOG4308 LRR-containing protein 94.1 0.00044 9.6E-09 74.3 -11.4 89 374-462 202-303 (478)
74 KOG0473 Leucine-rich repeat pr 93.9 0.0022 4.7E-08 59.5 -5.6 84 518-604 41-124 (326)
75 KOG4308 LRR-containing protein 92.9 0.0011 2.5E-08 71.2 -10.7 164 306-469 93-282 (478)
76 PF13504 LRR_7: Leucine rich r 92.6 0.076 1.7E-06 27.6 1.3 11 545-555 3-13 (17)
77 PF13504 LRR_7: Leucine rich r 92.1 0.1 2.2E-06 27.1 1.4 13 43-55 2-14 (17)
78 smart00369 LRR_TYP Leucine-ric 92.0 0.15 3.3E-06 29.9 2.3 21 18-38 2-22 (26)
79 smart00370 LRR Leucine-rich re 92.0 0.15 3.3E-06 29.9 2.3 21 18-38 2-22 (26)
80 KOG3864 Uncharacterized conser 90.2 0.045 9.8E-07 50.2 -1.8 85 19-103 102-187 (221)
81 smart00369 LRR_TYP Leucine-ric 89.7 0.26 5.7E-06 28.9 1.8 14 567-580 2-15 (26)
82 smart00370 LRR Leucine-rich re 89.7 0.26 5.7E-06 28.9 1.8 14 567-580 2-15 (26)
83 KOG0473 Leucine-rich repeat pr 89.1 0.0081 1.7E-07 55.9 -7.4 90 12-106 36-125 (326)
84 KOG3864 Uncharacterized conser 84.0 0.18 3.8E-06 46.4 -1.7 82 377-458 102-185 (221)
85 PF13516 LRR_6: Leucine Rich r 83.6 0.28 6.1E-06 28.1 -0.4 13 146-158 3-15 (24)
86 KOG4242 Predicted myosin-I-bin 81.3 4.6 9.9E-05 42.4 6.9 36 521-556 415-453 (553)
87 smart00365 LRR_SD22 Leucine-ri 76.8 2.3 5E-05 25.0 1.9 13 18-30 2-14 (26)
88 smart00364 LRR_BAC Leucine-ric 70.5 3.1 6.8E-05 24.3 1.4 13 544-556 3-15 (26)
89 KOG4242 Predicted myosin-I-bin 69.4 25 0.00053 37.3 8.5 60 354-413 415-481 (553)
90 smart00368 LRR_RI Leucine rich 64.6 5.4 0.00012 23.8 1.7 14 543-556 2-15 (28)
91 PF01102 Glycophorin_A: Glycop 59.2 6.3 0.00014 33.5 1.8 23 662-684 65-87 (122)
92 TIGR00864 PCC polycystin catio 58.7 5.3 0.00012 51.5 1.9 33 549-581 1-33 (2740)
93 PF15102 TMEM154: TMEM154 prot 55.5 7.4 0.00016 33.9 1.7 19 672-690 70-88 (146)
94 PF08693 SKG6: Transmembrane a 54.8 6.1 0.00013 25.9 0.8 20 664-683 15-34 (40)
95 KOG3763 mRNA export factor TAP 53.8 7.4 0.00016 41.8 1.7 14 328-341 218-231 (585)
96 PF04478 Mid2: Mid2 like cell 51.9 4.1 9E-05 35.6 -0.4 16 662-677 50-65 (154)
97 PF02439 Adeno_E3_CR2: Adenovi 50.7 17 0.00038 23.4 2.3 9 667-675 9-17 (38)
98 KOG3763 mRNA export factor TAP 40.2 13 0.00028 40.1 1.0 80 350-431 216-307 (585)
99 smart00367 LRR_CC Leucine-rich 38.7 17 0.00036 21.1 0.9 9 44-52 4-12 (26)
100 PF07204 Orthoreo_P10: Orthore 36.8 30 0.00064 27.4 2.2 28 662-689 43-70 (98)
101 PTZ00382 Variant-specific surf 34.1 18 0.00038 29.5 0.7 10 662-671 67-76 (96)
102 PTZ00370 STEVOR; Provisional 29.1 46 0.00099 32.8 2.6 22 676-697 271-292 (296)
103 PF15179 Myc_target_1: Myc tar 27.7 47 0.001 30.1 2.2 23 662-684 25-47 (197)
104 PF08374 Protocadherin: Protoc 24.4 51 0.0011 30.9 2.0 21 662-682 39-59 (221)
105 TIGR00864 PCC polycystin catio 24.3 50 0.0011 43.4 2.5 31 1-31 2-32 (2740)
106 PRK01844 hypothetical protein; 22.8 87 0.0019 23.7 2.5 16 678-693 19-34 (72)
107 PF14575 EphA2_TM: Ephrin type 22.4 77 0.0017 24.4 2.3 19 666-684 6-24 (75)
108 PRK00523 hypothetical protein; 22.2 91 0.002 23.6 2.5 17 677-693 19-35 (72)
109 PF08114 PMP1_2: ATPase proteo 21.4 65 0.0014 21.1 1.4 13 678-690 24-36 (43)
110 TIGR01478 STEVOR variant surfa 20.6 60 0.0013 31.9 1.7 16 678-693 277-292 (295)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-65 Score=610.75 Aligned_cols=541 Identities=32% Similarity=0.490 Sum_probs=381.4
Q ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEE
Q 041683 19 SLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFS 98 (743)
Q Consensus 19 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~ 98 (743)
+++.|+|++|.+.+..+..|..+++|++|+|++|.+++.+|...+.++++|++|+++ +|.+.+.+|. ..+++|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls-~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS-NNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECc-CCccccccCc--cccCCCCEEE
Confidence 455555555555555555555555555555555555545554334455555555555 3344444442 2345555555
Q ss_pred ccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccC
Q 041683 99 MRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSN 178 (743)
Q Consensus 99 L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 178 (743)
+++|.+.+..|..++.+. +|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..++++++|++|++++
T Consensus 147 Ls~n~~~~~~p~~~~~l~-----~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFS-----SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CcCCcccccCChHHhcCC-----CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 555555555555555544 555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCcccc
Q 041683 179 NKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKI 258 (743)
Q Consensus 179 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 258 (743)
|++.+.+|. .+.++++|++|++++|.+.+..+..+..+.+|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+
T Consensus 222 n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 222 NNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred CccCCcCCh-hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 555544444 3555555555555555555555555555555555555555555555555555555555555555555444
Q ss_pred ChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCC
Q 041683 259 PRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKN 338 (743)
Q Consensus 259 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n 338 (743)
|..+ ..+++|+.|++++|.+.+..|..... ...+. .+++++|.+.+.+|..+ ..+++|+.|++++|
T Consensus 301 p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~-------l~~L~--~L~L~~n~l~~~~p~~l----~~~~~L~~L~Ls~n 366 (968)
T PLN00113 301 PELV-IQLQNLEILHLFSNNFTGKIPVALTS-------LPRLQ--VLQLWSNKFSGEIPKNL----GKHNNLTVLDLSTN 366 (968)
T ss_pred ChhH-cCCCCCcEEECCCCccCCcCChhHhc-------CCCCC--EEECcCCCCcCcCChHH----hCCCCCcEEECCCC
Confidence 4433 23455555555555554443321000 00011 44555555555444333 34678999999999
Q ss_pred cCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCch
Q 041683 339 NFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS 418 (743)
Q Consensus 339 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 418 (743)
++.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+.+|.
T Consensus 367 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446 (968)
T ss_pred eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh
Confidence 99988999999999999999999999999999999999999999999999988999999999999999999999988877
Q ss_pred hHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcc
Q 041683 419 WIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSE 498 (743)
Q Consensus 419 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 498 (743)
... .+++|+.|++++|++.+..|..+ ..++|+.|++++|++.+..|..+.+++.
T Consensus 447 ~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~------------------------ 500 (968)
T PLN00113 447 RKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE------------------------ 500 (968)
T ss_pred hhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhc------------------------
Confidence 665 68999999999999998888765 4688999999999999888888776665
Q ss_pred cccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCc
Q 041683 499 IFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQ 578 (743)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 578 (743)
|+.|++++|++.+.+|..+.++++|++|+|++|.+++.+|..|..+++|+.|+|++|+
T Consensus 501 ----------------------L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 501 ----------------------LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred ----------------------cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence 4899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC-CCCCCC
Q 041683 579 LSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-DLCGDP 630 (743)
Q Consensus 579 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~ 630 (743)
+++.+|..+..+++|+.|++++|+++|.+|..+++.++...++.|| .+||.+
T Consensus 559 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999999999 799865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.2e-59 Score=554.08 Aligned_cols=516 Identities=30% Similarity=0.478 Sum_probs=453.1
Q ss_pred CCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhcc-CCCCCCEEEccCCcCcccchhhhhcccccc
Q 041683 41 VNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFG-KLCKLTSFSMRFTKLSQDISEILGIFSACV 119 (743)
Q Consensus 41 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 119 (743)
..+++.|+|++|.+++.++. .|..+++|++|+|+ +|.+.+.+|..+. ++++|++|++++|.+++.+|. +.++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls-~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~--- 140 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLS-NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP--- 140 (968)
T ss_pred CCcEEEEEecCCCccccCCh-HHhCCCCCCEEECC-CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC---
Confidence 45799999999999988877 89999999999999 6778878887654 999999999999999887764 2344
Q ss_pred cCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEE
Q 041683 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFF 199 (743)
Q Consensus 120 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 199 (743)
+|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|. .+..+++|++|
T Consensus 141 --~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L 217 (968)
T PLN00113 141 --NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWI 217 (968)
T ss_pred --CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEE
Confidence 899999999999999999999999999999999999999999999999999999999999988887 79999999999
Q ss_pred ECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcc
Q 041683 200 RANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQI 279 (743)
Q Consensus 200 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l 279 (743)
++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSL 296 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCee
Confidence 9999999999999999999999999999999999999999999999999999999888887764 578999999999999
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEEC
Q 041683 280 YGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNL 359 (743)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 359 (743)
.+.+|..... ...+. .+++++|.+.+..|..+ ..+++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus 297 ~~~~p~~~~~-------l~~L~--~L~l~~n~~~~~~~~~~----~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 363 (968)
T PLN00113 297 SGEIPELVIQ-------LQNLE--ILHLFSNNFTGKIPVAL----TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363 (968)
T ss_pred ccCCChhHcC-------CCCCc--EEECCCCccCCcCChhH----hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence 8877752111 01112 67888888887776544 34788889999999888888888888888999999
Q ss_pred CCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcc
Q 041683 360 GHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHG 439 (743)
Q Consensus 360 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~ 439 (743)
++|++.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+|..+. .++.|+.|++++|.+.+
T Consensus 364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQG 442 (968)
T ss_pred CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccC
Confidence 99988888888888888899999999988888888888888999999999988888887665 68889999999998888
Q ss_pred cCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccc
Q 041683 440 DFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILN 519 (743)
Q Consensus 440 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (743)
..+..+..+++|+.|++++|++.+.+|..+. .+
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-----------------------------------------------~~ 475 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFG-----------------------------------------------SK 475 (968)
T ss_pred ccChhhccCCCCcEEECcCceeeeecCcccc-----------------------------------------------cc
Confidence 8888888888899999999988877776432 13
Q ss_pred cccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCc
Q 041683 520 LVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLS 599 (743)
Q Consensus 520 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 599 (743)
.|+.||+++|++++.+|..+..+++|++|+|++|++.+.+|+.+..+++|++|++++|.+++.+|..+..+++|+.||++
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCC-cccCCCCCccccCCCCCC
Q 041683 600 NNNLVGKIPSS-TQLQSFGASSFAGNDLCG 628 (743)
Q Consensus 600 ~N~l~~~~p~~-~~~~~l~~~~~~~n~l~~ 628 (743)
+|+++|.+|.. ..+..+..+++++|.+.|
T Consensus 556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 556 QNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999976 456778888999997655
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-41 Score=338.09 Aligned_cols=377 Identities=22% Similarity=0.238 Sum_probs=306.3
Q ss_pred CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683 122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA 201 (743)
Q Consensus 122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 201 (743)
.-+.|++++|++...-+..|.++++|+++++..|.++ .+|...+...+|+.|+|.+|.|+ .+....++.++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 5677999999998888888999999999999999998 67766666677999999999998 676668999999999999
Q ss_pred CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcccc
Q 041683 202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYG 281 (743)
Q Consensus 202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~ 281 (743)
+.|.|.......|..-.+++.|+|++|+|+..-...|..+.+|..|.|+.|.++ .+|...|..+++|+.|+|..|+|.-
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceee
Confidence 999998888888888889999999999999888889999999999999999997 6888888889999999999998751
Q ss_pred CCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCC
Q 041683 282 GIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH 361 (743)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 361 (743)
. . .-.+..+++|+.|.+..|.+.....+.|..+.++++|+|+.
T Consensus 236 v-------------------------e------------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 236 V-------------------------E------------GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET 278 (873)
T ss_pred e-------------------------h------------hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence 0 0 01234478899999999999988889999999999999999
Q ss_pred CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccC
Q 041683 362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDF 441 (743)
Q Consensus 362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 441 (743)
|++......++.++++|+.|++++|.|..+.++++..+++|++|+|++|+|+ .+++..+..+..|++|+|++|.+...-
T Consensus 279 N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~ 357 (873)
T KOG4194|consen 279 NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLA 357 (873)
T ss_pred chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHH
Confidence 9999877788899999999999999999999999999999999999999998 788777778999999999999999777
Q ss_pred CccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccc
Q 041683 442 PIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLV 521 (743)
Q Consensus 442 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 521 (743)
...|..+++|+.|||++|.++..+.+.
T Consensus 358 e~af~~lssL~~LdLr~N~ls~~IEDa----------------------------------------------------- 384 (873)
T KOG4194|consen 358 EGAFVGLSSLHKLDLRSNELSWCIEDA----------------------------------------------------- 384 (873)
T ss_pred hhHHHHhhhhhhhcCcCCeEEEEEecc-----------------------------------------------------
Confidence 778999999999999999988655432
Q ss_pred cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCC
Q 041683 522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN 601 (743)
Q Consensus 522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 601 (743)
...|.++++|+.|++.+|++..+.-.+|.++.+|++|||.+|.|..+-|.+|..+ .|+.|-+..-
T Consensus 385 --------------a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 385 --------------AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred --------------hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 1224455555666666666554444455556666666666666655555555555 5555555555
Q ss_pred cccccC
Q 041683 602 NLVGKI 607 (743)
Q Consensus 602 ~l~~~~ 607 (743)
.+.|.+
T Consensus 450 sflCDC 455 (873)
T KOG4194|consen 450 SFLCDC 455 (873)
T ss_pred ceEEec
Confidence 544443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-40 Score=330.78 Aligned_cols=389 Identities=23% Similarity=0.237 Sum_probs=205.1
Q ss_pred CEEECCCCCCCCCCchhhcCC--CCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEE
Q 041683 21 KYLDLSSNELNSTVLGWLSKV--NDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFS 98 (743)
Q Consensus 21 ~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~ 98 (743)
+.||.+++.+..+....+.++ +.-+.||+++|.+. .+.-..|.++++|+.+++. +|.+ ..+|.......+|++|+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~-~N~L-t~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLN-KNEL-TRIPRFGHESGHLEKLD 131 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeec-cchh-hhcccccccccceeEEe
Confidence 344555554443332222222 12333555555554 3333244555555555554 3333 23444444444455555
Q ss_pred ccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccC
Q 041683 99 MRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSN 178 (743)
Q Consensus 99 L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 178 (743)
|.+|.++..-.+.+..++ .|+.|||+.|.|+......|..-.++++|+|++|.|+......|..+.+|..|.|++
T Consensus 132 L~~N~I~sv~se~L~~l~-----alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALP-----ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eeccccccccHHHHHhHh-----hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 555555544444444444 455555555555444444444445555555555555544444555555555555555
Q ss_pred CCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCcccc
Q 041683 179 NKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKI 258 (743)
Q Consensus 179 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 258 (743)
|+++ .+|...|.++++|+.|+|..|+|.....-.|.++++|+.|.+..|.+.......|..+.++++|+|+.|+++..-
T Consensus 207 Nrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 207 NRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred Cccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 5554 444445555555555555555554444445555555555555555555444445555555555555555554333
Q ss_pred ChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCC
Q 041683 259 PRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKN 338 (743)
Q Consensus 259 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n 338 (743)
..++++ ++.|+.|++++|.|...- .+.++++++|++|+|++|
T Consensus 286 ~g~lfg-Lt~L~~L~lS~NaI~rih-------------------------------------~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 286 EGWLFG-LTSLEQLDLSYNAIQRIH-------------------------------------IDSWSFTQKLKELDLSSN 327 (873)
T ss_pred cccccc-cchhhhhccchhhhheee-------------------------------------cchhhhcccceeEecccc
Confidence 333332 455555555555443110 122333556666666666
Q ss_pred cCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCC---cccCCCCCCCEEeCCCCcCccc
Q 041683 339 NFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIP---TSFKNFSSLEVLDLGENELVGS 415 (743)
Q Consensus 339 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~~ 415 (743)
+|+...++.|..+..|++|+|++|.+...-..+|.++.+|++|+|++|.++..+. ..|.++++|+.|++.+|++. .
T Consensus 328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~ 406 (873)
T KOG4194|consen 328 RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-S 406 (873)
T ss_pred ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-e
Confidence 6666666666666666666666666665555566666666666666666654332 33556666666666666665 6
Q ss_pred CchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccC
Q 041683 416 IPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVAS 458 (743)
Q Consensus 416 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 458 (743)
+|...+.+++.|+.|+|.+|.|..+-|.+|..+ .|+.|.+..
T Consensus 407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 666666666666666666666666666666666 566665543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4e-41 Score=324.02 Aligned_cols=481 Identities=24% Similarity=0.360 Sum_probs=324.3
Q ss_pred CCCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcC
Q 041683 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDEL 80 (743)
Q Consensus 1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l 80 (743)
+++|.++ .+.+++.++..|.+|++++|++.. .|.+++.+..++.|+.++|++. .+|+ .+..+.+|+.|+.++| .+
T Consensus 52 ls~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~l~~s~n-~~ 126 (565)
T KOG0472|consen 52 LSHNDLE-VLREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVKLDCSSN-EL 126 (565)
T ss_pred hccCchh-hccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhhhhcccc-ce
Confidence 4678887 455678999999999999999854 5667899999999999999998 8888 8899999999999944 44
Q ss_pred CcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccc
Q 041683 81 GGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGS 160 (743)
Q Consensus 81 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 160 (743)
. .+|..++.+..|+.++..+|+++. .|+.+..+. +|..+++.+|++....|+.+. ++.|++||...|.+. .
T Consensus 127 ~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~-----~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 127 K-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLS-----KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-T 197 (565)
T ss_pred e-ecCchHHHHhhhhhhhcccccccc-CchHHHHHH-----HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-c
Confidence 3 578889999999999999999876 566666666 789999999999877777665 999999999999998 7
Q ss_pred cchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcC
Q 041683 161 IPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS 240 (743)
Q Consensus 161 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 240 (743)
+|..++.+.+|+.|++.+|++. .+|+ |..+..|++++++.|++..........+.++.+|++++|++. ..|+.+.-
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 7889999999999999999998 7885 999999999999999987666566668889999999999997 77888889
Q ss_pred CCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCC----CCcccCCCCCCCCeEEec-CCcc-cc
Q 041683 241 QRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPS----MPLITTPSDLLGPIFDLS-NNAL-SG 314 (743)
Q Consensus 241 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----~~~~~~~~~l~~~~l~ls-~n~l-~~ 314 (743)
+.+|+.||+++|.|++ +|..+.. + .|+.|.+.+|++...-..+.... +++..+ ....+.+.-+ +-.- .+
T Consensus 274 LrsL~rLDlSNN~is~-Lp~sLgn-l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs--~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 274 LRSLERLDLSNNDISS-LPYSLGN-L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS--KIKDDGLSQSEGGTETAM 348 (565)
T ss_pred hhhhhhhcccCCcccc-CCccccc-c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH--hhccCCCCCCcccccccC
Confidence 9999999999999974 6766544 4 88999999998763211110000 000000 0000000000 0000 00
Q ss_pred ccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCC--CCCcEEEccCccccccC
Q 041683 315 SIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTL--SSLLSLNLRNNILSGII 392 (743)
Q Consensus 315 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~ 392 (743)
..+..... ......+.+.|++++-+++.+..+.|... .-....+++.|++. ..
T Consensus 349 t~~~~~~~------------------------~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-el 403 (565)
T KOG0472|consen 349 TLPSESFP------------------------DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-EL 403 (565)
T ss_pred CCCCCccc------------------------chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hh
Confidence 00000001 11122344445555544442222222211 12445555555554 33
Q ss_pred CcccCCCCCCC-EEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccc
Q 041683 393 PTSFKNFSSLE-VLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINN 471 (743)
Q Consensus 393 ~~~~~~l~~L~-~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 471 (743)
|..+..+..+. .+.+++|.+. -+|..+. .+++|..|++++|.+. .+|..+..+..|+.||++.|+|. .+|.+...
T Consensus 404 Pk~L~~lkelvT~l~lsnn~is-fv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~ 479 (565)
T KOG0472|consen 404 PKRLVELKELVTDLVLSNNKIS-FVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE 479 (565)
T ss_pred hhhhHHHHHHHHHHHhhcCccc-cchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhh
Confidence 43333333322 2334444442 3333333 4566666666666555 45555666666666666666654 44544433
Q ss_pred cccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCC
Q 041683 472 LSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLS 551 (743)
Q Consensus 472 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 551 (743)
+.. ++.+-.++|++....|..+.++..|.+|||.
T Consensus 480 lq~----------------------------------------------lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 480 LQT----------------------------------------------LETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred HHH----------------------------------------------HHHHHhccccccccChHHhhhhhhcceeccC
Confidence 322 2444455567765556668888888888888
Q ss_pred CCcCcccCCCCCCCCCCccEEECcCCcCC
Q 041683 552 HNLLTGRIPDNIGVMRSIESLDLSANQLS 580 (743)
Q Consensus 552 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (743)
+|.+. .+|..+++|++|++|++++|.+.
T Consensus 514 nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 514 NNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CCchh-hCChhhccccceeEEEecCCccC
Confidence 88888 77778888888888888888887
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1e-39 Score=314.36 Aligned_cols=477 Identities=24% Similarity=0.328 Sum_probs=275.1
Q ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEE
Q 041683 18 TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSF 97 (743)
Q Consensus 18 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L 97 (743)
..|+.+++++|.+.... +.+.++..|.+|++.+|++. .+|. +++.+..+..|+.+ .+.+ ..+|..++.+.+|+++
T Consensus 45 v~l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs-~n~l-s~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVS-HNKL-SELPEQIGSLISLVKL 119 (565)
T ss_pred cchhhhhhccCchhhcc-HhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcc-cchH-hhccHHHhhhhhhhhh
Confidence 34555556666553332 23555555666666666665 4454 55555556666665 2233 2455555566666666
Q ss_pred EccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEcc
Q 041683 98 SMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLS 177 (743)
Q Consensus 98 ~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 177 (743)
++++|.+.. .++.++.+. .|+.++..+|++.+ .|.++..+.+|..+++.+|.++...|..+. ++.|++||..
T Consensus 120 ~~s~n~~~e-l~~~i~~~~-----~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~ 191 (565)
T KOG0472|consen 120 DCSSNELKE-LPDSIGRLL-----DLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCN 191 (565)
T ss_pred hccccceee-cCchHHHHh-----hhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccc
Confidence 666555543 333344433 45555555555533 334455555555666666655533333332 5556666655
Q ss_pred CCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccc
Q 041683 178 NNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAK 257 (743)
Q Consensus 178 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 257 (743)
.|-+. .+|. .++.+.+|+.|++..|++... +.|.++..|+++.++.|++.........+++++..||+.+|+++ .
T Consensus 192 ~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~~l--Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e 266 (565)
T KOG0472|consen 192 SNLLE-TLPP-ELGGLESLELLYLRRNKIRFL--PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-E 266 (565)
T ss_pred hhhhh-cCCh-hhcchhhhHHHHhhhcccccC--CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-c
Confidence 55554 4444 355555566666666655433 25555555555555555554333334445555555555555554 3
Q ss_pred cChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcC
Q 041683 258 IPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSK 337 (743)
Q Consensus 258 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~ 337 (743)
.|+.+.- +.+|.+||+++|.+++..+. ++++ .|+.|-+.+
T Consensus 267 ~Pde~cl-LrsL~rLDlSNN~is~Lp~s--------------------------------------Lgnl-hL~~L~leG 306 (565)
T KOG0472|consen 267 VPDEICL-LRSLERLDLSNNDISSLPYS--------------------------------------LGNL-HLKFLALEG 306 (565)
T ss_pred CchHHHH-hhhhhhhcccCCccccCCcc--------------------------------------cccc-eeeehhhcC
Confidence 4544432 34455555555555432221 2223 455556666
Q ss_pred CcCcccCCccccCCC--CCCEE-------ECCCCcCc----cc-CCcc---ccCCCCCcEEEccCccccccCCcccCCCC
Q 041683 338 NNFSGDIPDCWMNWL--RLRAL-------NLGHNNFT----GS-LPMS---IGTLSSLLSLNLRNNILSGIIPTSFKNFS 400 (743)
Q Consensus 338 n~l~~~~~~~~~~l~--~L~~L-------~Ls~n~l~----~~-~~~~---~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 400 (743)
|.+..+-.+.+..-+ -|++| -++.-.-. .. .+.. ...+.+.+.|++++-+++.+..+.|..-.
T Consensus 307 NPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~ 386 (565)
T KOG0472|consen 307 NPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK 386 (565)
T ss_pred CchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhh
Confidence 655422111111000 01111 01110000 00 0111 12245677888888777744433343221
Q ss_pred --CCCEEeCCCCcCcccCchhHHhcccCC-cEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccc
Q 041683 401 --SLEVLDLGENELVGSIPSWIGERFSIL-KILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAI 477 (743)
Q Consensus 401 --~L~~L~Ls~n~i~~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 477 (743)
-...++++.|++. ++|..+.. +..+ +.+.+++|.+. .+|..++.+++|..|++++|.+. .+|..++.+..
T Consensus 387 ~~~Vt~VnfskNqL~-elPk~L~~-lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~--- 459 (565)
T KOG0472|consen 387 SEIVTSVNFSKNQLC-ELPKRLVE-LKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR--- 459 (565)
T ss_pred hcceEEEecccchHh-hhhhhhHH-HHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhh---
Confidence 2677888888887 77876652 3333 34555666655 67777888888888888888776 66666655544
Q ss_pred cCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcc
Q 041683 478 TDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG 557 (743)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 557 (743)
|+.||+|+|+|. .+|..+..+..|+.+-.++|++..
T Consensus 460 -------------------------------------------Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 460 -------------------------------------------LQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS 495 (565)
T ss_pred -------------------------------------------hheecccccccc-cchHHHhhHHHHHHHHhccccccc
Confidence 488999999888 788888777788888888888886
Q ss_pred cCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCccc
Q 041683 558 RIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLV 604 (743)
Q Consensus 558 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 604 (743)
..|+.+.+|.+|..|||.+|.+. .+|..++++++|++|++++|+|.
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 66666888999999999999998 77778899999999999999987
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-37 Score=323.34 Aligned_cols=465 Identities=22% Similarity=0.252 Sum_probs=236.9
Q ss_pred CCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCc
Q 041683 44 LEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANEL 123 (743)
Q Consensus 44 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L 123 (743)
+..|+++.|.+. ..|-..+++.-+|+.||++ |+.+ +..|..+..+.+|+.|+++.|.+.. .|.....+. +|
T Consensus 23 ~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~ls-nn~~-~~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~-----~l 93 (1081)
T KOG0618|consen 23 LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLS-NNQI-SSFPIQITLLSHLRQLNLSRNYIRS-VPSSCSNMR-----NL 93 (1081)
T ss_pred HHhhhccccccc-cCchHHhhheeeeEEeecc-cccc-ccCCchhhhHHHHhhcccchhhHhh-Cchhhhhhh-----cc
Confidence 444444444443 2222233333334444444 3332 2344444444444444444444332 223333333 45
Q ss_pred cEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCC
Q 041683 124 ESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANG 203 (743)
Q Consensus 124 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 203 (743)
+++.|.+|.+ ...|..+..+++|++|+++.|.+. .+|..+..++.++.+..++|.....++. .. ++.+++..
T Consensus 94 ~~lnL~~n~l-~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~ 165 (1081)
T KOG0618|consen 94 QYLNLKNNRL-QSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRL 165 (1081)
T ss_pred hhheeccchh-hcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhh
Confidence 5555555444 234455555555555555555555 4455555555555555555521111111 11 44445555
Q ss_pred CcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCC
Q 041683 204 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGI 283 (743)
Q Consensus 204 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 283 (743)
|.+.+.+......+.. .|++++|.+. ...+..+.+|+.|....|++.... ...++++.|+.++|.++...
T Consensus 166 n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~~~~ 235 (1081)
T KOG0618|consen 166 NVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLTTLD 235 (1081)
T ss_pred hhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCcceeec
Confidence 4444433333333322 4555555553 222445555666666666554311 11245666666666554222
Q ss_pred CCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCc
Q 041683 284 PKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN 363 (743)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 363 (743)
+......+ . .+++++|++++.. +++.. +.+|+.++..+|++. ..|..+....+|+.|.+.+|.
T Consensus 236 ~~p~p~nl---------~--~~dis~n~l~~lp-~wi~~----~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 236 VHPVPLNL---------Q--YLDISHNNLSNLP-EWIGA----CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred cccccccc---------e--eeecchhhhhcch-HHHHh----cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhh
Confidence 11110000 0 3333343333322 33322 555666666666654 444445555556666666666
Q ss_pred CcccCCccccCCCCCcEEEccCccccccCCcccCCCCC-CCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCC
Q 041683 364 FTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSS-LEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP 442 (743)
Q Consensus 364 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 442 (743)
+. -+|....+...|++|+|..|++....+..+..... |+.|+.+.|++. ..|..-......|+.|++.+|.++...-
T Consensus 299 l~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 299 LE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred hh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccch
Confidence 55 34444455556666666666655333333333322 555555555554 3442222234556677777777765555
Q ss_pred ccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhccccccc
Q 041683 443 IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVR 522 (743)
Q Consensus 443 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 522 (743)
..+.+..+|+.|+|++|++.......+.++.. |+
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~----------------------------------------------Le 410 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE----------------------------------------------LE 410 (1081)
T ss_pred hhhccccceeeeeecccccccCCHHHHhchHH----------------------------------------------hH
Confidence 55666777777777777776333334444444 46
Q ss_pred EEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCc
Q 041683 523 SIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNN 602 (743)
Q Consensus 523 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 602 (743)
.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..+++|+.+|+|.|+++...-......++|++||+++|.
T Consensus 411 eL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 411 ELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 7777777777 56677777777777777777776 566 56777777777777777764432222223677777777776
Q ss_pred c
Q 041683 603 L 603 (743)
Q Consensus 603 l 603 (743)
-
T Consensus 488 ~ 488 (1081)
T KOG0618|consen 488 R 488 (1081)
T ss_pred c
Confidence 3
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-36 Score=321.46 Aligned_cols=462 Identities=26% Similarity=0.346 Sum_probs=317.9
Q ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEE
Q 041683 19 SLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFS 98 (743)
Q Consensus 19 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~ 98 (743)
+|+.||+++|++ +..|..+..+++|+.|+++.|.|. .+|. +..++.+|++|.|. |+.+ ...|..+..+++|++|+
T Consensus 46 ~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~-s~~~~~~l~~lnL~-~n~l-~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 46 KLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPS-SCSNMRNLQYLNLK-NNRL-QSLPASISELKNLQYLD 120 (1081)
T ss_pred eeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCch-hhhhhhcchhheec-cchh-hcCchhHHhhhcccccc
Confidence 466666666665 334555666666666666666665 5554 56666666666666 4433 34566666666666666
Q ss_pred ccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccC
Q 041683 99 MRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSN 178 (743)
Q Consensus 99 L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 178 (743)
++.|.+.. +|..+..+. .++.+..++|..... ++.. .++.+++..|.+.+.++..+..++. .|+|.+
T Consensus 121 lS~N~f~~-~Pl~i~~lt-----~~~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~ 187 (1081)
T KOG0618|consen 121 LSFNHFGP-IPLVIEVLT-----AEEELAASNNEKIQR----LGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY 187 (1081)
T ss_pred cchhccCC-CchhHHhhh-----HHHHHhhhcchhhhh----hccc-cchhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence 66666543 444444444 455555555521111 1111 1666777777776666666666655 678888
Q ss_pred CCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCcccc
Q 041683 179 NKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKI 258 (743)
Q Consensus 179 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 258 (743)
|.+. .. .+..+.+|+.+....|++..... .-++++.|+.++|.+....+. ....+|+.+++++|.++ .+
T Consensus 188 N~~~-~~---dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~l 256 (1081)
T KOG0618|consen 188 NEME-VL---DLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NL 256 (1081)
T ss_pred chhh-hh---hhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cc
Confidence 8765 22 36677777777777777653321 234677788888877633332 22356788888888886 46
Q ss_pred ChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCC
Q 041683 259 PRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKN 338 (743)
Q Consensus 259 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n 338 (743)
|.|+ ..+.+|+.++..+|.++ .+| ..+....+|+.|.+..|
T Consensus 257 p~wi-~~~~nle~l~~n~N~l~-~lp-------------------------------------~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 257 PEWI-GACANLEALNANHNRLV-ALP-------------------------------------LRISRITSLVSLSAAYN 297 (1081)
T ss_pred hHHH-HhcccceEecccchhHH-hhH-------------------------------------HHHhhhhhHHHHHhhhh
Confidence 6444 44678888888877764 111 11222568999999999
Q ss_pred cCcccCCccccCCCCCCEEECCCCcCcccCCcc-ccCCC-CCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccC
Q 041683 339 NFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMS-IGTLS-SLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI 416 (743)
Q Consensus 339 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 416 (743)
.+. .+|+....++.|++|+|..|++. ..|+. +.-.. .|..|+.+.|.+.......-..++.|+.|.+.+|.+++..
T Consensus 298 el~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 298 ELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 998 56777888999999999999998 45543 33333 4788888888887544333345678999999999998654
Q ss_pred chhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCC
Q 041683 417 PSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQ 496 (743)
Q Consensus 417 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ 496 (743)
-.-+ .+..+|+.|+|++|++.......+.++..|+.|+||+|++. .+|+++..+..|
T Consensus 376 ~p~l-~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L--------------------- 432 (1081)
T KOG0618|consen 376 FPVL-VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL--------------------- 432 (1081)
T ss_pred hhhh-ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh---------------------
Confidence 4433 36899999999999999555557899999999999999998 677777776664
Q ss_pred cccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCccc-CCCCCCCCCCccEEECc
Q 041683 497 SEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGR-IPDNIGVMRSIESLDLS 575 (743)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls 575 (743)
++|...+|++. ..| .+.+++.|+.+|+|.|+++.. +|.... -++|++||++
T Consensus 433 -------------------------~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlS 484 (1081)
T KOG0618|consen 433 -------------------------HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLS 484 (1081)
T ss_pred -------------------------HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Ccccceeecc
Confidence 88899999997 666 899999999999999999853 344332 3899999999
Q ss_pred CCcCCCCCCccccCcCCCCeeeCcCC
Q 041683 576 ANQLSGQIPQSMSNLSFLNHLNLSNN 601 (743)
Q Consensus 576 ~N~l~~~~p~~l~~l~~L~~L~ls~N 601 (743)
+|.-....-+.|..+.++..+++.-|
T Consensus 485 GN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 485 GNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CCcccccchhhhHHhhhhhheecccC
Confidence 99965456667777888888888777
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.3e-33 Score=284.32 Aligned_cols=275 Identities=24% Similarity=0.349 Sum_probs=171.2
Q ss_pred CcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCcc
Q 041683 233 RFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNAL 312 (743)
Q Consensus 233 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l 312 (743)
..|..+....++-.|+||+|+|. .+|..++.++..|-+|||++|++....|.
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ--------------------------- 168 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQ--------------------------- 168 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHH---------------------------
Confidence 44555555556666666666663 56666666666666666666665422221
Q ss_pred ccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCc-ccCCccccCCCCCcEEEccCcccccc
Q 041683 313 SGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFT-GSLPMSIGTLSSLLSLNLRNNILSGI 391 (743)
Q Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~ 391 (743)
...+..|++|+|++|.+...--..+..+++|+.|.+++.+-+ .-+|.++.++.+|..++++.|.+. +
T Consensus 169 -----------~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~ 236 (1255)
T KOG0444|consen 169 -----------IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-I 236 (1255)
T ss_pred -----------HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-c
Confidence 122345666666666655322233344556666666665433 245666666777777777777766 5
Q ss_pred CCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccc-ccCcccc
Q 041683 392 IPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG-TIPRCIN 470 (743)
Q Consensus 392 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~ 470 (743)
.|+.+.++++|+.|+||+|+|+ .+..... ...+|++|+++.|+++ .+|.+++.++.|+.|.+.+|++.- -+|..++
T Consensus 237 vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred chHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence 6666777777777777777776 4444443 3456777777777777 667777777777777777776652 2455555
Q ss_pred ccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeC
Q 041683 471 NLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNL 550 (743)
Q Consensus 471 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 550 (743)
.+..| +.+..++|.+. ..|+.+..+..|+.|.|
T Consensus 314 KL~~L----------------------------------------------evf~aanN~LE-lVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 314 KLIQL----------------------------------------------EVFHAANNKLE-LVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred hhhhh----------------------------------------------HHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence 44443 55566666665 77788888888888888
Q ss_pred CCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeC
Q 041683 551 SHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNL 598 (743)
Q Consensus 551 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 598 (743)
++|++. .+|+++.-++.|+.||+..|.-....|.--..-++|+.-++
T Consensus 347 ~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 347 DHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred ccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 888877 77888888888888888888766444432222245554443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.3e-33 Score=284.29 Aligned_cols=372 Identities=25% Similarity=0.352 Sum_probs=295.9
Q ss_pred CCCCCCCEEECCCCCCC-CCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCC
Q 041683 15 GNLTSLKYLDLSSNELN-STVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCK 93 (743)
Q Consensus 15 ~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~ 93 (743)
+-++-.|-+|+++|.++ +..|+....+++++.|.|...++. .+|+ .++++.+|++|.+++|+ +. .+-..+..++.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~-L~-~vhGELs~Lp~ 79 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQ-LI-SVHGELSDLPR 79 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhh-hH-hhhhhhccchh
Confidence 34566777888888887 457888888888888888888887 7787 78888888888888543 32 34456777888
Q ss_pred CCEEEccCCcCcc-cchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCC
Q 041683 94 LTSFSMRFTKLSQ-DISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLE 172 (743)
Q Consensus 94 L~~L~L~~n~l~~-~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (743)
|+.++++.|++.. .+|..+-.+. .|..|||++|++ ...|..+..-+++-+|+||+|+|..+....|.+++.|-
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~-----dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLK-----DLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccc-----cceeeecchhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 8888888887653 4676666666 788888888888 45677788888888888888888865556677888888
Q ss_pred EEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCC-CCcchhhcCCCCCCEEEccC
Q 041683 173 YLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLG-PRFPLWLQSQRELNDLDISS 251 (743)
Q Consensus 173 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~ 251 (743)
.||||+|++. .+|. ....+..|++|+|++|++....-..+-.+..|++|.+++.+-+ ..+|..+..+.+|..+|+|.
T Consensus 154 fLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 154 FLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred hhccccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 8888888887 6666 5788888888888888876554455556667888888877543 46788899999999999999
Q ss_pred CCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCcc
Q 041683 252 TRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIE 331 (743)
Q Consensus 252 n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~ 331 (743)
|.+. .+|+.++. +++|+.|+|++|+|+.. .. ......+|+
T Consensus 232 N~Lp-~vPecly~-l~~LrrLNLS~N~iteL-----------------------~~---------------~~~~W~~lE 271 (1255)
T KOG0444|consen 232 NNLP-IVPECLYK-LRNLRRLNLSGNKITEL-----------------------NM---------------TEGEWENLE 271 (1255)
T ss_pred cCCC-cchHHHhh-hhhhheeccCcCceeee-----------------------ec---------------cHHHHhhhh
Confidence 9996 68887765 78999999999988721 10 011135799
Q ss_pred EEECcCCcCcccCCccccCCCCCCEEECCCCcCc-ccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCC
Q 041683 332 FLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFT-GSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN 410 (743)
Q Consensus 332 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n 410 (743)
+|++|.|+++ ..|++++.++.|+.|.+.+|+++ .-+|..++.+.+|+.+...+|.+. ..|..++.|..|+.|.|+.|
T Consensus 272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccc
Confidence 9999999998 78999999999999999999987 357888999999999999999987 88999999999999999999
Q ss_pred cCcccCchhHHhcccCCcEEEccCCcCcccCC
Q 041683 411 ELVGSIPSWIGERFSILKILNLRSNKFHGDFP 442 (743)
Q Consensus 411 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 442 (743)
++. .+|+.+. -++.|+.|++..|.-.-..|
T Consensus 350 rLi-TLPeaIH-lL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 350 RLI-TLPEAIH-LLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cee-echhhhh-hcCCcceeeccCCcCccCCC
Confidence 998 8998886 68999999999987653333
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2e-22 Score=240.80 Aligned_cols=159 Identities=21% Similarity=0.305 Sum_probs=79.9
Q ss_pred chhccCCCCCCEEEccCCcCc------ccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCc
Q 041683 85 PTSFGKLCKLTSFSMRFTKLS------QDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILD 158 (743)
Q Consensus 85 ~~~l~~l~~L~~L~L~~n~l~------~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 158 (743)
+.+|.+|++|+.|.+..+... ..+|..+..++ .+|+.|++.++.+. .+|..| ...+|++|++++|.+.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp----~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP----PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcC----cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc
Confidence 345666777777766544321 12233332222 14555555555542 233333 3455555555555554
Q ss_pred cccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhh
Q 041683 159 GSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWL 238 (743)
Q Consensus 159 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 238 (743)
.++..+..+++|++|+|+++.....+|. +..+++ |+.|++++|.....+|..+
T Consensus 625 -~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~------------------------Le~L~L~~c~~L~~lp~si 677 (1153)
T PLN03210 625 -KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATN------------------------LETLKLSDCSSLVELPSSI 677 (1153)
T ss_pred -ccccccccCCCCCEEECCCCCCcCcCCc--cccCCc------------------------ccEEEecCCCCccccchhh
Confidence 3444455555555555555442224443 444444 4444554444334555566
Q ss_pred cCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCc
Q 041683 239 QSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQ 278 (743)
Q Consensus 239 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~ 278 (743)
..+++|+.|++++|...+.+|..+ .+++|+.|++++|.
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCS 715 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCC
Confidence 666666666666654334455433 34556666666554
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=3.5e-26 Score=221.07 Aligned_cols=246 Identities=20% Similarity=0.246 Sum_probs=144.0
Q ss_pred CCCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCC-CccccccCcccccCCCCCCEEEcCCCCc
Q 041683 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYS-NRLQGNVSSLGLENLTSIKRLYLSENDE 79 (743)
Q Consensus 1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L~Ls~~~~ 79 (743)
|..|+|+.+.|.+|..+++||+||||+|+|+.+.|++|.++++|..|-+-+ |+|+ .+|...|+++..|+.|.+. -++
T Consensus 74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllN-an~ 151 (498)
T KOG4237|consen 74 LDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLN-ANH 151 (498)
T ss_pred eccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcC-hhh
Confidence 346777777777788888888888888888777778887777776666655 7777 7777777777777777776 556
Q ss_pred CCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCc------------ccchhhccCCCCC
Q 041683 80 LGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIF------------GHLTNQLRRFKRL 147 (743)
Q Consensus 80 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~------------~~~~~~l~~l~~L 147 (743)
+.-....+|..+++|..|.+..|.+.......+..+. .++.+.+..|.+. ...|..++.....
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~-----~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLA-----AIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred hcchhHHHHHHhhhcchhcccchhhhhhccccccchh-----ccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 6556667777777777777777766443222444444 5556655555421 1112222222222
Q ss_pred CEEECcCccCc-------------------------cccc-hhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683 148 NSLDLSNTILD-------------------------GSIP-FSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA 201 (743)
Q Consensus 148 ~~L~Ls~n~l~-------------------------~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 201 (743)
.-..+.+.++. ++.| ..|..+++|+.|+|++|+++ .+.+.+|....++++|.|
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYL 305 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhc
Confidence 22222222222 1222 23555555666666666555 444445555555566666
Q ss_pred CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCC
Q 041683 202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRI 254 (743)
Q Consensus 202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 254 (743)
..|++.......|..+..|++|+|.+|+|+...|.+|..+..|.+|++-.|.+
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 55555555555555555555555555555555555555555555555555544
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=9.2e-26 Score=218.16 Aligned_cols=412 Identities=20% Similarity=0.212 Sum_probs=239.2
Q ss_pred CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccC-CCCccccChhhhcCCCCCCEEE
Q 041683 122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSN-NKLNGTVSEIHFVNLTKLAFFR 200 (743)
Q Consensus 122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~ 200 (743)
.-.+++|..|+|+..++.+|+.+++|+.||||+|.|+.+.|.+|.++++|.+|-+.+ |+|+ .++...|.++..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 556777778888777777888888888888888888877777887777777765555 7776 77777788888888888
Q ss_pred CCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccc------------cChhhhhhccc
Q 041683 201 ANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAK------------IPRGFWNSIYQ 268 (743)
Q Consensus 201 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~------------~~~~~~~~l~~ 268 (743)
+.-|++.......|..++++..|.+.+|.+...-...|..+.+++.+.+..|.+... .|.. ++....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-ccccee
Confidence 877777777777777777777788887777655555677777777777777763110 1110 111111
Q ss_pred CceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCC-ccccccchhhccCCCCCCCccEEECcCCcCcccCCcc
Q 041683 269 YFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNN-ALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDC 347 (743)
Q Consensus 269 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n-~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 347 (743)
..-..+.+.++...-+.-.....+.. .-.++.. ...+..|. ..+..+++|++|++++|+++++.+.+
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl---------~s~~~~~d~~d~~cP~---~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESL---------PSRLSSEDFPDSICPA---KCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhH---------HHhhccccCcCCcChH---HHHhhcccceEeccCCCccchhhhhh
Confidence 22222333332211111000000000 0000111 11111111 22556778888888888888877888
Q ss_pred ccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccC-chhHHhcccC
Q 041683 348 WMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI-PSWIGERFSI 426 (743)
Q Consensus 348 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~~l~~ 426 (743)
|.+...+++|.|..|++..+-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|++...- -.|+.+.+.
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr- 372 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR- 372 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHh-
Confidence 888888888888888887666677888888888888888888888888888888888888777664211 123332221
Q ss_pred CcEEEccCCcCcccCCccccCCCCccEEEccCCcccccc---CccccccccccccCccchhhhhhccccCCCCccccccc
Q 041683 427 LKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTI---PRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDA 503 (743)
Q Consensus 427 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (743)
.....+..+ -+.-..++.+++++..+...- |+..+-...- .. +
T Consensus 373 -------~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~----------------~c--P------- 418 (498)
T KOG4237|consen 373 -------KKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSS----------------PC--P------- 418 (498)
T ss_pred -------hCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCC----------------CC--C-------
Confidence 111111111 111224556666666554221 1111100000 00 0
Q ss_pred ceeeeceeeehhcccccc-cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCC
Q 041683 504 SLVMKGVLVEYNSILNLV-RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQ 582 (743)
Q Consensus 504 ~~~~~~~~~~~~~~~~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 582 (743)
..++-+ +....|+..+. .+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+++|+++..
T Consensus 419 ------------~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~L 479 (498)
T KOG4237|consen 419 ------------PPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSL 479 (498)
T ss_pred ------------CCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehh
Confidence 000001 11222333332 3332221 23456777777777 66665 55667 778888887766
Q ss_pred CCccccCcCCCCeeeCcCC
Q 041683 583 IPQSMSNLSFLNHLNLSNN 601 (743)
Q Consensus 583 ~p~~l~~l~~L~~L~ls~N 601 (743)
.-..|.+++.|.+|-||+|
T Consensus 480 sn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 480 SNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hcccccchhhhheeEEecC
Confidence 6667777788888777776
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.5e-21 Score=233.17 Aligned_cols=341 Identities=18% Similarity=0.215 Sum_probs=252.3
Q ss_pred CCCCCCCCCCCCEEECCCCCC------CCCCchhhcCCC-CCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCc
Q 041683 10 IPSRLGNLTSLKYLDLSSNEL------NSTVLGWLSKVN-DLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGG 82 (743)
Q Consensus 10 ~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~ 82 (743)
.+.+|.++++|+.|.+..+.. ....|+.|..++ +|+.|++.++.++ .+|. .| ...+|+.|+++ ++.+.
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~-~s~l~- 624 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQ-GSKLE- 624 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECc-Ccccc-
Confidence 346799999999999976532 234566777765 6999999999987 7787 45 57899999999 55554
Q ss_pred ccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccc
Q 041683 83 KIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIP 162 (743)
Q Consensus 83 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 162 (743)
.++..+..+++|+.|+++++.....+|. +..++ +|++|++++|.....+|..+.++++|+.|++++|.....+|
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~-----~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMAT-----NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCC-----cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence 5677788999999999998765555553 45555 89999999988778889999999999999999976555677
Q ss_pred hhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCC-------CCcc
Q 041683 163 FSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLG-------PRFP 235 (743)
Q Consensus 163 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~ 235 (743)
..+ ++++|++|++++|.....+|. ...+|++|++++|.+... +.. ..+.+|+.|.+.++... ...+
T Consensus 699 ~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~l-P~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 699 TGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEF-PSN-LRLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred CcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccc-ccc-ccccccccccccccchhhccccccccch
Confidence 655 789999999999876555554 246889999999987643 332 25677888888765421 1122
Q ss_pred hhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccc
Q 041683 236 LWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGS 315 (743)
Q Consensus 236 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~ 315 (743)
......++|+.|++++|.....+|..+ ..+++|+.|++++|...+.+|..
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~LP~~----------------------------- 821 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLETLPTG----------------------------- 821 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCeeCCC-----------------------------
Confidence 223345789999999998777788775 45889999999987644333321
Q ss_pred cchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcc
Q 041683 316 IFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTS 395 (743)
Q Consensus 316 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 395 (743)
. .+++|+.|++++|.....+|.. .++|++|+|++|.++ .+|..+..+++|++|++++|.--..+|..
T Consensus 822 --------~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 822 --------I-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred --------C-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence 0 2567888888887655444432 357888889888887 57778888888999998886444456666
Q ss_pred cCCCCCCCEEeCCCCc
Q 041683 396 FKNFSSLEVLDLGENE 411 (743)
Q Consensus 396 ~~~l~~L~~L~Ls~n~ 411 (743)
+..+++|+.+++++|.
T Consensus 889 ~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 889 ISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccCCCeeecCCCc
Confidence 7788888888888885
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=9.5e-21 Score=209.37 Aligned_cols=261 Identities=27% Similarity=0.319 Sum_probs=168.4
Q ss_pred ccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCC
Q 041683 220 LTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSD 299 (743)
Q Consensus 220 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 299 (743)
-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|.. +++|++|++++|+++. +|.
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l----p~~Lk~LdLs~N~Lts-LP~-------------- 259 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL----PPELRTLEVSGNQLTS-LPV-------------- 259 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC----CCCCcEEEecCCccCc-ccC--------------
Confidence 345556666555 3444332 356666666666653 4431 3566666666666652 121
Q ss_pred CCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCc
Q 041683 300 LLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLL 379 (743)
Q Consensus 300 l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 379 (743)
..++|+.|++++|.+.. +|.. ..+|+.|++++|+++ .+|. ..++|+
T Consensus 260 --------------------------lp~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~ 305 (788)
T PRK15387 260 --------------------------LPPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQ 305 (788)
T ss_pred --------------------------cccccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-cccc---cccccc
Confidence 02457777777777763 3322 245777777777777 3343 235677
Q ss_pred EEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCC
Q 041683 380 SLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASN 459 (743)
Q Consensus 380 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 459 (743)
.|++++|.++++ |.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|
T Consensus 306 ~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N 372 (788)
T PRK15387 306 ELSVSDNQLASL-PAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNN 372 (788)
T ss_pred eeECCCCccccC-CCC---cccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcc
Confidence 777777777753 321 235677777777776 56631 2467788888887773 4432 346777788888
Q ss_pred ccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhh
Q 041683 460 SLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV 539 (743)
Q Consensus 460 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 539 (743)
++.+ +|.. ...|+.|++++|++++ +|..
T Consensus 373 ~L~~-LP~l-------------------------------------------------~~~L~~LdLs~N~Lt~-LP~l- 400 (788)
T PRK15387 373 RLTS-LPAL-------------------------------------------------PSGLKELIVSGNRLTS-LPVL- 400 (788)
T ss_pred cccc-Cccc-------------------------------------------------ccccceEEecCCcccC-CCCc-
Confidence 7763 3421 1225788888888884 4433
Q ss_pred cccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683 540 TNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS 609 (743)
Q Consensus 540 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 609 (743)
.++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|+|++.+|.
T Consensus 401 --~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 401 --PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred --ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 357888999999988 46653 346788999999998 6788888889999999999999887765
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=5.5e-20 Score=203.36 Aligned_cols=277 Identities=23% Similarity=0.298 Sum_probs=194.3
Q ss_pred cccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCC
Q 041683 114 IFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNL 193 (743)
Q Consensus 114 ~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 193 (743)
.+..|..+.-..|+++++.++ .+|..+. ++|+.|++++|.++. +|. .+++|++|++++|+++ .+|. ..
T Consensus 194 r~~~Cl~~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp 261 (788)
T PRK15387 194 KMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LP 261 (788)
T ss_pred HHHHHhcCCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----cc
Confidence 333444456778888888886 4555554 478888888888884 553 2578888888888887 5554 13
Q ss_pred CCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEe
Q 041683 194 TKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLN 273 (743)
Q Consensus 194 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~ 273 (743)
++|+.|++++|.+..... .+.+|+.|++++|++.. +|. ..++|+.|++++|.+++ +|.. ...|+.|+
T Consensus 262 ~sL~~L~Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l----p~~L~~L~ 328 (788)
T PRK15387 262 PGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL----PSELCKLW 328 (788)
T ss_pred cccceeeccCCchhhhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC----cccccccc
Confidence 578888888887764321 12467777788877763 333 23567788888877764 4431 23566677
Q ss_pred cccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCC
Q 041683 274 ISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLR 353 (743)
Q Consensus 274 l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 353 (743)
+++|.+++ +|. ...+|+.|++++|++++ +|.. ..+
T Consensus 329 Ls~N~L~~-LP~----------------------------------------lp~~Lq~LdLS~N~Ls~-LP~l---p~~ 363 (788)
T PRK15387 329 AYNNQLTS-LPT----------------------------------------LPSGLQELSVSDNQLAS-LPTL---PSE 363 (788)
T ss_pred cccCcccc-ccc----------------------------------------cccccceEecCCCccCC-CCCC---Ccc
Confidence 77766642 221 02468899999999884 4432 357
Q ss_pred CCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEcc
Q 041683 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLR 433 (743)
Q Consensus 354 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~ 433 (743)
|+.|++++|+++. +|.. ..+|+.|++++|.+++ +|.. .++|+.|++++|++. .+|.. ..+|+.|+++
T Consensus 364 L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls 430 (788)
T PRK15387 364 LYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVY 430 (788)
T ss_pred cceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhc
Confidence 8888999999884 5543 3578999999999885 4432 367899999999997 67753 3468889999
Q ss_pred CCcCcccCCccccCCCCccEEEccCCccccccCcccccccc
Q 041683 434 SNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSA 474 (743)
Q Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 474 (743)
+|+++ .+|..+.++++|+.|++++|++++..+..+..+..
T Consensus 431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s 470 (788)
T PRK15387 431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 470 (788)
T ss_pred cCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence 99998 67888999999999999999999887777655444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.6e-18 Score=193.43 Aligned_cols=76 Identities=29% Similarity=0.504 Sum_probs=32.4
Q ss_pred CCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEc
Q 041683 377 SLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDV 456 (743)
Q Consensus 377 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 456 (743)
+|+.|++++|.+++ +|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|++. .+|..+. .+|+.|++
T Consensus 326 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdL 395 (754)
T PRK15370 326 GLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPENLP--AALQIMQA 395 (754)
T ss_pred cceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhh
Confidence 44444444444442 222221 34555555555544 344322 234555555555544 2333221 23444555
Q ss_pred cCCccc
Q 041683 457 ASNSLS 462 (743)
Q Consensus 457 s~N~l~ 462 (743)
++|++.
T Consensus 396 s~N~L~ 401 (754)
T PRK15370 396 SRNNLV 401 (754)
T ss_pred ccCCcc
Confidence 555444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=2.5e-18 Score=191.76 Aligned_cols=204 Identities=26% Similarity=0.434 Sum_probs=101.8
Q ss_pred CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCC
Q 041683 329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG 408 (743)
Q Consensus 329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 408 (743)
+|++|++++|+++. +|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|+++. +|..+. ++|+.|+++
T Consensus 221 nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECC
Confidence 45555555555542 232221 24555555555555 3333332 345555555555552 333332 355555555
Q ss_pred CCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhh
Q 041683 409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILY 488 (743)
Q Consensus 409 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 488 (743)
+|+++ .+|..+. ++|+.|++++|.+.. +|..+ .++|+.|++++|.+++ +|..+
T Consensus 292 ~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l------------------- 344 (754)
T PRK15370 292 DNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL------------------- 344 (754)
T ss_pred CCccc-cCcccch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh-------------------
Confidence 55555 3443321 245555666665552 33322 2455666666665552 33211
Q ss_pred ccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCC
Q 041683 489 SSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRS 568 (743)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 568 (743)
.+.|+.|++++|+++ .+|..+. ++|+.|+|++|+++ .+|..+. .+
T Consensus 345 -----------------------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~s 389 (754)
T PRK15370 345 -----------------------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AA 389 (754)
T ss_pred -----------------------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HH
Confidence 112466666666665 3444332 46666666666666 4444433 35
Q ss_pred ccEEECcCCcCCCCCCccc----cCcCCCCeeeCcCCccc
Q 041683 569 IESLDLSANQLSGQIPQSM----SNLSFLNHLNLSNNNLV 604 (743)
Q Consensus 569 L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~ls~N~l~ 604 (743)
|+.|++++|+++ .+|..+ ..++.+..+++.+|+++
T Consensus 390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 666666666666 334332 22355666666666665
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.1e-19 Score=187.16 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=49.3
Q ss_pred cccEEEccCCcCcccCchhhc-----ccCCCCEEeCCCCcCcc----cCCCCCCCCCCccEEECcCCcCCCC----CCcc
Q 041683 520 LVRSIDVSKNIFSGEIPVEVT-----NLQGLQSLNLSHNLLTG----RIPDNIGVMRSIESLDLSANQLSGQ----IPQS 586 (743)
Q Consensus 520 ~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~ 586 (743)
.|+.|++++|.+++.....+. ..+.|++|++++|.++. .+.+.+..+++|+.+++++|.++.. ....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 356666666666542222221 13677777777777751 2233445557777777777777744 3333
Q ss_pred ccCc-CCCCeeeCcCCcc
Q 041683 587 MSNL-SFLNHLNLSNNNL 603 (743)
Q Consensus 587 l~~l-~~L~~L~ls~N~l 603 (743)
+... +.|+.+++.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 4444 5777777777764
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=3.3e-18 Score=178.15 Aligned_cols=271 Identities=22% Similarity=0.249 Sum_probs=153.5
Q ss_pred CCCcCC-CCCCCCCCCCCCCCEEECCCCCCCCC----CchhhcCCCCCCEEEcCCCcccc------ccCcccccCCCCCC
Q 041683 2 SGNQFQ-GQIPSRLGNLTSLKYLDLSSNELNST----VLGWLSKVNDLEFLSVYSNRLQG------NVSSLGLENLTSIK 70 (743)
Q Consensus 2 s~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~~l~~L~ 70 (743)
.++.++ ...+..|..+++|++|+++++.++.. ++..+...++|++|+++++.+.+ .++. .+..+++|+
T Consensus 6 ~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~~L~ 84 (319)
T cd00116 6 KGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKGCGLQ 84 (319)
T ss_pred ccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhcCcee
Confidence 345554 23334456666777888887776432 34445566777778777776651 1222 456677777
Q ss_pred EEEcCCCCcCCcccchhccCCCC---CCEEEccCCcCcccch----hhhhcccccccCCccEEEccCCcCccc----chh
Q 041683 71 RLYLSENDELGGKIPTSFGKLCK---LTSFSMRFTKLSQDIS----EILGIFSACVANELESLRLGSSQIFGH----LTN 139 (743)
Q Consensus 71 ~L~Ls~~~~l~~~~~~~l~~l~~---L~~L~L~~n~l~~~~~----~~l~~l~~~~~~~L~~L~L~~n~~~~~----~~~ 139 (743)
+|+++ ++.+.+..+..+..+.+ |++|++++|.++.... ..+... .++|++|++++|.+++. ++.
T Consensus 85 ~L~l~-~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~----~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 85 ELDLS-DNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL----PPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred EEEcc-CCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC----CCCceEEEcCCCcCCchHHHHHHH
Confidence 77777 55555445555544444 7777777777663221 222222 12677777777777632 333
Q ss_pred hccCCCCCCEEECcCccCccc----cchhccCCCCCCEEEccCCCCccccCh---hhhcCCCCCCEEECCCCcceeecCC
Q 041683 140 QLRRFKRLNSLDLSNTILDGS----IPFSLGQISNLEYLDLSNNKLNGTVSE---IHFVNLTKLAFFRANGNSLIFKINP 212 (743)
Q Consensus 140 ~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~ 212 (743)
.+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+.... ..+..+++|++|++++|.+......
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 455667777777777777632 233445556777777777776522111 1345667777777777766532111
Q ss_pred CCC-----CCccccEEEcCCCcCCC----CcchhhcCCCCCCEEEccCCCCccccChhh---hhhc-ccCceEecccCc
Q 041683 213 NWV-----PPFQLTVLELRSCHLGP----RFPLWLQSQRELNDLDISSTRISAKIPRGF---WNSI-YQYFYLNISGNQ 278 (743)
Q Consensus 213 ~~~-----~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~---~~~l-~~L~~L~l~~n~ 278 (743)
.+. ....|+.|++++|.++. .+...+..+++|+.+++++|.++..-...+ .... +.++.+++.+|.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 111 23567777777776652 123344455667777777777764321111 1112 456666665553
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=2e-18 Score=148.23 Aligned_cols=129 Identities=37% Similarity=0.504 Sum_probs=78.8
Q ss_pred CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683 327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD 406 (743)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 406 (743)
+..++.|.+|+|+++ .+|..+..+.+|+.|++++|++. ..|..++.+++|+.|++.-|++. +.|..|+.++.|++||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 456677777777777 44556677777777777777776 56666777777777777777765 6666777777777777
Q ss_pred CCCCcCcc-cCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCc
Q 041683 407 LGENELVG-SIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNS 460 (743)
Q Consensus 407 Ls~n~i~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 460 (743)
+.+|.+.. .+|..+| .++.|+.|++++|.+. .+|...+++++|+.|.+.+|.
T Consensus 109 ltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred ccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 77766642 3444444 3444555555555544 344444444444444444443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.4e-18 Score=149.17 Aligned_cols=84 Identities=30% Similarity=0.570 Sum_probs=53.4
Q ss_pred CCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEE
Q 041683 375 LSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQIL 454 (743)
Q Consensus 375 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 454 (743)
+..++.|.+++|+++ ..|..++.+.+|+.|++++|++. .+|..+. .++.|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 445555666666665 33445566666666666666665 5666554 4666666666666666 666677777777777
Q ss_pred EccCCccc
Q 041683 455 DVASNSLS 462 (743)
Q Consensus 455 ~Ls~N~l~ 462 (743)
|+.+|++.
T Consensus 108 dltynnl~ 115 (264)
T KOG0617|consen 108 DLTYNNLN 115 (264)
T ss_pred hccccccc
Confidence 77777665
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=1.3e-14 Score=161.81 Aligned_cols=116 Identities=37% Similarity=0.663 Sum_probs=103.4
Q ss_pred cccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCc
Q 041683 520 LVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLS 599 (743)
Q Consensus 520 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 599 (743)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCc--ccCCCCCccccCC-CCCCCCC-CCCC
Q 041683 600 NNNLVGKIPSST--QLQSFGASSFAGN-DLCGDPL-SNCT 635 (743)
Q Consensus 600 ~N~l~~~~p~~~--~~~~l~~~~~~~n-~l~~~~~-~~c~ 635 (743)
+|+++|.+|... .+..+..+++.+| .+|+.|. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999752 1233456778999 8998763 3553
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=5.4e-14 Score=143.48 Aligned_cols=195 Identities=28% Similarity=0.458 Sum_probs=155.6
Q ss_pred CCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEE
Q 041683 351 WLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKIL 430 (743)
Q Consensus 351 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L 430 (743)
+.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|+.+||+.|++. .+|..++ .++ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cCc-ceeE
Confidence 344567889999998 78888888889999999999998 67788999999999999999998 8888876 455 9999
Q ss_pred EccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeece
Q 041683 431 NLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGV 510 (743)
Q Consensus 431 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (743)
.+++|+++ .+|..++.++.|..||.+.|.+. .+|..+..+.+|
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl----------------------------------- 191 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL----------------------------------- 191 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-----------------------------------
Confidence 99999998 77888888889999999999987 566666665553
Q ss_pred eeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCcccc--
Q 041683 511 LVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMS-- 588 (743)
Q Consensus 511 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-- 588 (743)
+.|.+..|.+. ..|+++..|+ |..||+|.|+++ .+|-.|..|+.|++|-|.+|.+. ..|..+.
T Consensus 192 -----------r~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~k 256 (722)
T KOG0532|consen 192 -----------RDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEK 256 (722)
T ss_pred -----------HHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhc
Confidence 77788888887 4566666444 888999999988 88888999999999999999988 4554432
Q ss_pred -CcCCCCeeeCcCCc
Q 041683 589 -NLSFLNHLNLSNNN 602 (743)
Q Consensus 589 -~l~~L~~L~ls~N~ 602 (743)
...--++|+...++
T Consensus 257 GkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 257 GKVHIFKYLSTQACQ 271 (722)
T ss_pred cceeeeeeecchhcc
Confidence 23445677777774
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=1.5e-13 Score=140.28 Aligned_cols=193 Identities=32% Similarity=0.466 Sum_probs=140.6
Q ss_pred CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCC
Q 041683 329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG 408 (743)
Q Consensus 329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 408 (743)
.-...|++.|++. .+|..++.+..|+.+.+.+|.+. .+|.++..+..|++++++.|+++ ..|..++.++ |+.|-++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 3456677777777 56767777777777888888777 67777777888888888888877 4555666554 7778888
Q ss_pred CCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhh
Q 041683 409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILY 488 (743)
Q Consensus 409 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 488 (743)
+|+++ .+|..+. ..+.|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..++
T Consensus 152 NNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp--------------- 212 (722)
T KOG0532|consen 152 NNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP--------------- 212 (722)
T ss_pred cCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc---------------
Confidence 88886 7777776 6777888888888877 56677788888888888888876 4454444333
Q ss_pred ccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCC---C
Q 041683 489 SSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIG---V 565 (743)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~ 565 (743)
|..||+|+|+++ .+|.+|.+|+.|++|-|.+|.+. ..|..+. .
T Consensus 213 --------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGk 258 (722)
T KOG0532|consen 213 --------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGK 258 (722)
T ss_pred --------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccc
Confidence 578888888888 78888888888888888888887 5555432 2
Q ss_pred CCCccEEECcCCc
Q 041683 566 MRSIESLDLSANQ 578 (743)
Q Consensus 566 l~~L~~L~Ls~N~ 578 (743)
..--++|+..-++
T Consensus 259 VHIFKyL~~qA~q 271 (722)
T KOG0532|consen 259 VHIFKYLSTQACQ 271 (722)
T ss_pred eeeeeeecchhcc
Confidence 2334566666663
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=1.6e-11 Score=131.60 Aligned_cols=85 Identities=36% Similarity=0.580 Sum_probs=49.4
Q ss_pred cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCC
Q 041683 522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN 601 (743)
Q Consensus 522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 601 (743)
+++++++|.+. ..+..+..+..+..+.+++|++. ..+..++.+++++.|++++|.++...+ +..+.+++.|++++|
T Consensus 212 ~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n 287 (394)
T COG4886 212 EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGN 287 (394)
T ss_pred hhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCc
Confidence 44444444322 33444555666666666666665 335556666667777777777763333 566667777777777
Q ss_pred cccccCCCC
Q 041683 602 NLVGKIPSS 610 (743)
Q Consensus 602 ~l~~~~p~~ 610 (743)
.++..+|..
T Consensus 288 ~~~~~~~~~ 296 (394)
T COG4886 288 SLSNALPLI 296 (394)
T ss_pred cccccchhh
Confidence 666665543
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.22 E-value=3.1e-11 Score=135.00 Aligned_cols=114 Identities=32% Similarity=0.568 Sum_probs=102.1
Q ss_pred CccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCC
Q 041683 450 FLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKN 529 (743)
Q Consensus 450 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 529 (743)
.++.|+|++|.+.|.+|..+..++.| +.|+|++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L----------------------------------------------~~L~Ls~N 452 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHL----------------------------------------------QSINLSGN 452 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCC----------------------------------------------CEEECCCC
Confidence 37889999999999999888776664 89999999
Q ss_pred cCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCc-CCCCeeeCcCCcccccCC
Q 041683 530 IFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNL-SFLNHLNLSNNNLVGKIP 608 (743)
Q Consensus 530 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p 608 (743)
.++|.+|..+..+++|+.|+|++|++++.+|+.++.+++|+.|+|++|++++.+|..+..+ .++..+++++|+..|..|
T Consensus 453 ~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 453 SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999988764 567899999999877665
Q ss_pred C
Q 041683 609 S 609 (743)
Q Consensus 609 ~ 609 (743)
.
T Consensus 533 ~ 533 (623)
T PLN03150 533 G 533 (623)
T ss_pred C
Confidence 4
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.17 E-value=7.3e-12 Score=117.96 Aligned_cols=221 Identities=20% Similarity=0.242 Sum_probs=125.7
Q ss_pred CCCCccEEECcCCc--------CcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccC
Q 041683 326 FSNNIEFLKLSKNN--------FSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFK 397 (743)
Q Consensus 326 ~~~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 397 (743)
++..|+.|..+.-. +....|-.+..+.+|+.+.+|++.-..+ .+....-|.|+++.+.+..+... | .+-
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~-~-~l~ 256 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDV-P-SLL 256 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeeccccccc-c-ccc
Confidence 35567777766531 1122233344556777777777654422 12222235677777766554421 1 111
Q ss_pred CCCCCCEEeCC-----CCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCcccccc
Q 041683 398 NFSSLEVLDLG-----ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNL 472 (743)
Q Consensus 398 ~l~~L~~L~Ls-----~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 472 (743)
....+....-+ .-.....+|.| +.|++++|++|.|+ .+.++..-.|.++.|++|+|.+.. ..++
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTW-----q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-----v~nL 325 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTW-----QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-----VQNL 325 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchH-----hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-----ehhh
Confidence 11111111111 11111123332 34777778887777 455566667777778888777752 1111
Q ss_pred ccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCC
Q 041683 473 SAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSH 552 (743)
Q Consensus 473 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 552 (743)
. .+++|+.||||+|.++ .+...-..+-+.++|.|++
T Consensus 326 a-------------------------------------------~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 326 A-------------------------------------------ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred h-------------------------------------------hcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 1 1334577777777776 3333445567788888888
Q ss_pred CcCcccCCCCCCCCCCccEEECcCCcCCCCCC-ccccCcCCCCeeeCcCCccccc
Q 041683 553 NLLTGRIPDNIGVMRSIESLDLSANQLSGQIP-QSMSNLSFLNHLNLSNNNLVGK 606 (743)
Q Consensus 553 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~ 606 (743)
|.|. .. ..++.+-+|..||+++|+|..... ..+++++.|+++.|.+||+.+.
T Consensus 362 N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 362 NKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 8875 22 346777788888888888864332 4677888888888888888754
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=8.2e-12 Score=123.96 Aligned_cols=86 Identities=27% Similarity=0.329 Sum_probs=46.9
Q ss_pred ccEEEccCCcCcccC-chhhcccCCCCEEeCCCCcCccc-CCCC-----CCCCCCccEEECcCCcCCCCC-CccccCcCC
Q 041683 521 VRSIDVSKNIFSGEI-PVEVTNLQGLQSLNLSHNLLTGR-IPDN-----IGVMRSIESLDLSANQLSGQI-PQSMSNLSF 592 (743)
Q Consensus 521 L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~ 592 (743)
|++|||++|.+.... -...+.++.|..|+++.+.+... .|+. ...+++|+.|+++.|+|...- -..+..+.+
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN 327 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence 455555555554221 12245566667777777766532 2222 234567777777777775211 123445566
Q ss_pred CCeeeCcCCccccc
Q 041683 593 LNHLNLSNNNLVGK 606 (743)
Q Consensus 593 L~~L~ls~N~l~~~ 606 (743)
|+.|.+..|+++.+
T Consensus 328 lk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 328 LKHLRITLNYLNKE 341 (505)
T ss_pred hhhhhccccccccc
Confidence 67777777777543
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=1.8e-10 Score=123.50 Aligned_cols=201 Identities=31% Similarity=0.530 Sum_probs=121.9
Q ss_pred EEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCC-CCcEEEccCccccccCCcccCCCCCCCEEeCCCC
Q 041683 332 FLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLS-SLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN 410 (743)
Q Consensus 332 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n 410 (743)
.++++.+.+... .......+.++.|++.+|.++ .++....... +|+.|++++|.+.. +|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 355555554311 122333455666666666666 3343344442 66666666666663 3344666677777777777
Q ss_pred cCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhcc
Q 041683 411 ELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSS 490 (743)
Q Consensus 411 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~ 490 (743)
++. .+|.... ..+.|+.|++++|++. .+|........|+++.+++|++. ..+..+.++..
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~---------------- 233 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN---------------- 233 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc----------------
Confidence 776 5555442 3666777777777776 44444444555777777777532 23333333333
Q ss_pred ccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCcc
Q 041683 491 LRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIE 570 (743)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 570 (743)
+..+.+++|++. ..+..++.++++++|++++|.++ .++. ++.+.+++
T Consensus 234 ------------------------------l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~ 280 (394)
T COG4886 234 ------------------------------LSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLR 280 (394)
T ss_pred ------------------------------ccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccC
Confidence 345556666665 23566777888999999999888 4444 78888999
Q ss_pred EEECcCCcCCCCCCcccc
Q 041683 571 SLDLSANQLSGQIPQSMS 588 (743)
Q Consensus 571 ~L~Ls~N~l~~~~p~~l~ 588 (743)
.|++++|.++...|....
T Consensus 281 ~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 281 ELDLSGNSLSNALPLIAL 298 (394)
T ss_pred EEeccCccccccchhhhc
Confidence 999999988876665443
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=4.1e-12 Score=122.76 Aligned_cols=136 Identities=18% Similarity=0.291 Sum_probs=86.4
Q ss_pred CCCccEEECcCCcCccc----CCccccCCCCCCEEECCCCcCcc----cCCccccCCCCCcEEEccCcccccc----CCc
Q 041683 327 SNNIEFLKLSKNNFSGD----IPDCWMNWLRLRALNLGHNNFTG----SLPMSIGTLSSLLSLNLRNNILSGI----IPT 394 (743)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~----~~~ 394 (743)
.+.|+.+....|++... +...|...+.|+.+.++.|.|.. ....+|..+++|+.|+|++|.++.. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 35577777777766522 12345556677777777776652 1223466777788888877776632 234
Q ss_pred ccCCCCCCCEEeCCCCcCcccCchhH----HhcccCCcEEEccCCcCccc----CCccccCCCCccEEEccCCccc
Q 041683 395 SFKNFSSLEVLDLGENELVGSIPSWI----GERFSILKILNLRSNKFHGD----FPIQLCGLAFLQILDVASNSLS 462 (743)
Q Consensus 395 ~~~~l~~L~~L~Ls~n~i~~~~~~~~----~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 462 (743)
.+..+++|++|++++|.+.......+ ....++|+.|.+.+|.++.. +.......+.|..|+|++|++.
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 56667778888888887764433332 23456788888888887622 2233455778888888888883
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.6e-11 Score=121.90 Aligned_cols=231 Identities=22% Similarity=0.204 Sum_probs=158.6
Q ss_pred EEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCC-ccccCCCCCCEEECCCCcCcccC--CccccCCCCCcEE
Q 041683 305 FDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIP-DCWMNWLRLRALNLGHNNFTGSL--PMSIGTLSSLLSL 381 (743)
Q Consensus 305 l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L 381 (743)
+.+++-.+.....+.+...-+++.+|++..|.++....... .....|++++.||||+|-+.... ......+++|+.|
T Consensus 98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~L 177 (505)
T KOG3207|consen 98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENL 177 (505)
T ss_pred hhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhc
Confidence 33444444444455555555667889999999998762221 36678999999999999887432 2334578999999
Q ss_pred EccCccccccCCc-ccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCc
Q 041683 382 NLRNNILSGIIPT-SFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNS 460 (743)
Q Consensus 382 ~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 460 (743)
+++.|++...... .-..+++|+.|.++.|.++..--.++...+|+|+.|+|.+|...........-++.|+.|||++|+
T Consensus 178 Nls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 178 NLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred ccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 9999988632211 123568899999999999744444555678999999999996443444455667889999999998
Q ss_pred cccccC-ccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccC-chh
Q 041683 461 LSGTIP-RCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEI-PVE 538 (743)
Q Consensus 461 l~~~~p-~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~ 538 (743)
+...-. ...+ .++.|+.|+++.+.+...- |+.
T Consensus 258 li~~~~~~~~~----------------------------------------------~l~~L~~Lnls~tgi~si~~~d~ 291 (505)
T KOG3207|consen 258 LIDFDQGYKVG----------------------------------------------TLPGLNQLNLSSTGIASIAEPDV 291 (505)
T ss_pred ccccccccccc----------------------------------------------cccchhhhhccccCcchhcCCCc
Confidence 863211 1112 2444677788888776432 222
Q ss_pred -----hcccCCCCEEeCCCCcCcccCC--CCCCCCCCccEEECcCCcCCCC
Q 041683 539 -----VTNLQGLQSLNLSHNLLTGRIP--DNIGVMRSIESLDLSANQLSGQ 582 (743)
Q Consensus 539 -----~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~ 582 (743)
...+++|+.|+++.|++. ..+ ..+..+++|+.|....|.++..
T Consensus 292 ~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 292 ESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence 356788999999999986 222 3355667888888889988744
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=4e-11 Score=113.06 Aligned_cols=224 Identities=16% Similarity=0.135 Sum_probs=122.8
Q ss_pred CCCCCCEEECCCCC--------CCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchh
Q 041683 16 NLTSLKYLDLSSNE--------LNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTS 87 (743)
Q Consensus 16 ~l~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~ 87 (743)
-+..|++|-.+... +....|-.+..+++|+.+.+|.|.-. .|-. ....-|.|+++... +..+.. ..+
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~-~~~~kptl~t~~v~-~s~~~~--~~~ 254 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVD-IELLKPTLQTICVH-NTTIQD--VPS 254 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heec-eeecCchhheeeee-cccccc--ccc
Confidence 34567777666432 12223334456677777777777654 3332 22233567777776 433321 112
Q ss_pred ccCCCCCCEEEccCCc-CcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhcc
Q 041683 88 FGKLCKLTSFSMRFTK-LSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLG 166 (743)
Q Consensus 88 l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 166 (743)
+-.++.+.....+.-. ..+.....+... ..|+++||++|.| ..+.++..-.|.++.|++|+|.|... ..+.
T Consensus 255 l~pe~~~~D~~~~E~~t~~G~~~~~~dTW-----q~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa 326 (490)
T KOG1259|consen 255 LLPETILADPSGSEPSTSNGSALVSADTW-----QELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTV--QNLA 326 (490)
T ss_pred ccchhhhcCccCCCCCccCCceEEecchH-----hhhhhccccccch-hhhhhhhhhccceeEEeccccceeee--hhhh
Confidence 2222222221111111 111111111111 2567777777766 34455566667777777777777633 2366
Q ss_pred CCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCC-cchhhcCCCCCC
Q 041683 167 QISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPR-FPLWLQSQRELN 245 (743)
Q Consensus 167 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~ 245 (743)
.+++|+.|||++|.++ .+.. +-..+.+.+.|.+++|.+... ..+..+.+|..|++++|+|... -...++++|.|+
T Consensus 327 ~L~~L~~LDLS~N~Ls-~~~G-wh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 327 ELPQLQLLDLSGNLLA-ECVG-WHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE 402 (490)
T ss_pred hcccceEeecccchhH-hhhh-hHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHH
Confidence 6677777777777765 4433 344566677777777766432 3345556677777777776532 234577888888
Q ss_pred EEEccCCCCcc
Q 041683 246 DLDISSTRISA 256 (743)
Q Consensus 246 ~L~l~~n~i~~ 256 (743)
.+.+.+|.+..
T Consensus 403 ~l~L~~NPl~~ 413 (490)
T KOG1259|consen 403 TLRLTGNPLAG 413 (490)
T ss_pred HHhhcCCCccc
Confidence 88888888864
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=1.3e-10 Score=105.81 Aligned_cols=105 Identities=26% Similarity=0.279 Sum_probs=23.1
Q ss_pred CccEEECcCCcCcccCCcccc-CCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683 329 NIEFLKLSKNNFSGDIPDCWM-NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL 407 (743)
Q Consensus 329 ~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 407 (743)
.+++|+|++|.|..+ +.+. .+.+|+.|++++|.|+.. +.+..++.|++|++++|.|+.+.+.....+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 455556666555532 1232 344555555555555532 23444555555555555555332211123455555555
Q ss_pred CCCcCcccCch-hHHhcccCCcEEEccCCcCc
Q 041683 408 GENELVGSIPS-WIGERFSILKILNLRSNKFH 438 (743)
Q Consensus 408 s~n~i~~~~~~-~~~~~l~~L~~L~L~~n~l~ 438 (743)
++|+|.. +.. .....+++|+.|++.+|++.
T Consensus 96 ~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 96 SNNKISD-LNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TTS---S-CCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCcCCC-hHHhHHHHcCCCcceeeccCCccc
Confidence 5555541 111 11123445555555555544
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=1e-10 Score=113.20 Aligned_cols=191 Identities=15% Similarity=0.150 Sum_probs=116.7
Q ss_pred ccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccch-------------hhccCCCCCCEEECcC
Q 041683 88 FGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLT-------------NQLRRFKRLNSLDLSN 154 (743)
Q Consensus 88 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~-------------~~l~~l~~L~~L~Ls~ 154 (743)
+..+++|++++||.|-+....+..+..+-.. +..|++|.|.+|.+.-.-. .....-++|+++...+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s-~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSS-CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHh-ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 4455566666666666554443333322111 1256666666666521111 1123446788888888
Q ss_pred ccCccc----cchhccCCCCCCEEEccCCCCcc--c-cChhhhcCCCCCCEEECCCCcceee----cCCCCCCCccccEE
Q 041683 155 TILDGS----IPFSLGQISNLEYLDLSNNKLNG--T-VSEIHFVNLTKLAFFRANGNSLIFK----INPNWVPPFQLTVL 223 (743)
Q Consensus 155 n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~--~-~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L 223 (743)
|++... +...|...+.|+.+.+++|.|.. . .-...|..+++|+.||+..|.++.. ....+..+++|+.|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 877532 23456667788888888887751 1 2223577888888888888877643 23345566688888
Q ss_pred EcCCCcCCCCcchhh-----cCCCCCCEEEccCCCCccccChhhh---hhcccCceEecccCcc
Q 041683 224 ELRSCHLGPRFPLWL-----QSQRELNDLDISSTRISAKIPRGFW---NSIYQYFYLNISGNQI 279 (743)
Q Consensus 224 ~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~l~~n~l 279 (743)
++++|.+.......+ ...+.|+.|.+.+|.|+..-...+. ...+.|..|++++|.+
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 888888876544443 2468899999999988643222111 2256788888888887
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=9.7e-10 Score=100.15 Aligned_cols=111 Identities=29% Similarity=0.405 Sum_probs=44.7
Q ss_pred ccCCCCCCEEECCCCcCcccCCcccc-CCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccC
Q 041683 348 WMNWLRLRALNLGHNNFTGSLPMSIG-TLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSI 426 (743)
Q Consensus 348 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~ 426 (743)
+.+..++++|+|++|.|+.+ +.++ .+.+|+.|++++|.|+.+ +.+..++.|++|++++|.|+ .++..+...+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 34556799999999999843 3455 578999999999999965 45888999999999999998 676555546899
Q ss_pred CcEEEccCCcCcccCC-ccccCCCCccEEEccCCcccc
Q 041683 427 LKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLSG 463 (743)
Q Consensus 427 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~ 463 (743)
|+.|++++|+|..... ..+..+++|+.|++.+|++..
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 9999999999974322 357789999999999999873
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=8.5e-10 Score=82.46 Aligned_cols=59 Identities=47% Similarity=0.635 Sum_probs=29.3
Q ss_pred CCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCc
Q 041683 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNN 602 (743)
Q Consensus 544 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 602 (743)
+|++|++++|+++...++.|..+++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555553333444555555555555555554444445555555555555554
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.6e-09 Score=80.90 Aligned_cols=61 Identities=36% Similarity=0.483 Sum_probs=57.2
Q ss_pred ccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcC
Q 041683 519 NLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQL 579 (743)
Q Consensus 519 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 579 (743)
++|++|++++|+++...+..|.++++|++|++++|+++...|+.|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4589999999999988888999999999999999999988889999999999999999986
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=2.6e-10 Score=122.21 Aligned_cols=128 Identities=25% Similarity=0.289 Sum_probs=76.4
Q ss_pred CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683 327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD 406 (743)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 406 (743)
+..++.+.+..|.+.. +-..+..+++|+.|++.+|.|..+ ...+..+++|++|++++|.|+.+. .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 3456666666666653 223455666777777777777633 222555677777777777776552 355556677777
Q ss_pred CCCCcCcccCchhHHhcccCCcEEEccCCcCcccCC-ccccCCCCccEEEccCCccc
Q 041683 407 LGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLS 462 (743)
Q Consensus 407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~ 462 (743)
+++|.|. .+... ..+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 147 l~~N~i~-~~~~~--~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLIS-DISGL--ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcch-hccCC--ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 7777765 33322 125667777777777664333 1 355666666667766664
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.81 E-value=7.4e-09 Score=118.40 Aligned_cols=132 Identities=24% Similarity=0.303 Sum_probs=97.5
Q ss_pred CCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCc--cccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCC
Q 041683 15 GNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNR--LQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLC 92 (743)
Q Consensus 15 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~ 92 (743)
.+....|...+.+|.+..+. .. ..++.|++|-+..|. +. .++...|..++.|+.|||++| .--+.+|..++.+.
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~-~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~-~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIA-GS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGN-SSLSKLPSSIGELV 595 (889)
T ss_pred cchhheeEEEEeccchhhcc-CC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCC-CccCcCChHHhhhh
Confidence 34456788888888764432 22 234578889888886 44 666656888999999999954 44467899999999
Q ss_pred CCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCcc
Q 041683 93 KLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTI 156 (743)
Q Consensus 93 ~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~ 156 (743)
+||+|+++++.+. .+|..++.+. .|.+|++..+.....+|.....+++|++|.+....
T Consensus 596 ~LryL~L~~t~I~-~LP~~l~~Lk-----~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS-HLPSGLGNLK-----KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhcccccCCCcc-ccchHHHHHH-----hhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999888877 4788888887 88888888777655566666678888888886654
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=2.1e-09 Score=115.22 Aligned_cols=225 Identities=26% Similarity=0.280 Sum_probs=159.6
Q ss_pred CCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCE
Q 041683 325 NFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV 404 (743)
Q Consensus 325 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 404 (743)
..+.+++.|++.+|+|..+. ..+..+++|++|++++|.|+.+ ..+..++.|+.|++++|.|+.+ ..+..++.|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhc
Confidence 34678999999999998543 3377899999999999999965 3466778899999999999865 45777999999
Q ss_pred EeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchh
Q 041683 405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQA 484 (743)
Q Consensus 405 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~ 484 (743)
+++++|.+. .+.......+.+++.+.+.+|.+... ..+..+..+..+++..|.+...-+ +..
T Consensus 167 l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~-----l~~---------- 228 (414)
T KOG0531|consen 167 LDLSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG-----LNE---------- 228 (414)
T ss_pred ccCCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC-----ccc----------
Confidence 999999998 45441023688999999999999843 234555666666888888763221 111
Q ss_pred hhhhccccCCCCcccccccceeeeceeeehhcccc--cccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCC
Q 041683 485 VILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILN--LVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN 562 (743)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 562 (743)
.. .|+.+++++|++. ..+..+..+..+..|++++|++... ..
T Consensus 229 ---------------------------------~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~ 272 (414)
T KOG0531|consen 229 ---------------------------------LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EG 272 (414)
T ss_pred ---------------------------------chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--cc
Confidence 01 2577888888887 3335566677888888888887632 23
Q ss_pred CCCCCCccEEECcCCcCCCC---CCcc-ccCcCCCCeeeCcCCcccccCC
Q 041683 563 IGVMRSIESLDLSANQLSGQ---IPQS-MSNLSFLNHLNLSNNNLVGKIP 608 (743)
Q Consensus 563 ~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~~~~p 608 (743)
+.....+..+....|.+... .... ......++.+++.+|+.....+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 273 LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 45566777777777777522 1111 4456777778888887766544
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.63 E-value=2.7e-08 Score=113.88 Aligned_cols=131 Identities=23% Similarity=0.265 Sum_probs=94.0
Q ss_pred CCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCc-CCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccc
Q 041683 41 VNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDE-LGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119 (743)
Q Consensus 41 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 119 (743)
....+...+-+|.+. .++. -..++.|++|-+..|.. +.......|..++.|+.|||++|.-.+.+|..++.+-
T Consensus 522 ~~~~rr~s~~~~~~~-~~~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li--- 595 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIAG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV--- 595 (889)
T ss_pred hhheeEEEEeccchh-hccC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh---
Confidence 356777777777776 4444 23445788888874432 4444445578888888888888776667888888877
Q ss_pred cCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCC
Q 041683 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180 (743)
Q Consensus 120 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 180 (743)
+|++|++++..+. .+|..+.++++|.+|++..+.-...+|.....+++|++|.+....
T Consensus 596 --~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 596 --HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred --hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 8888888888874 677778888888888888776655556666668888888876654
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.4e-09 Score=102.94 Aligned_cols=180 Identities=22% Similarity=0.292 Sum_probs=123.4
Q ss_pred CCCEEECCCCCCCCC-CchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCccc-chhccCCCCCCE
Q 041683 19 SLKYLDLSSNELNST-VLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKI-PTSFGKLCKLTS 96 (743)
Q Consensus 19 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~-~~~l~~l~~L~~ 96 (743)
.|++||||...|+.. .-..+..|.+|+.|.|.++++.+.+-. .++.-.+|+.|+|+.++.++... .--+.+|+.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 588999998888643 344567889999999999999877766 78888999999999776665432 224688999999
Q ss_pred EEccCCcCcccchhhhhcccccccCCccEEEccCCcC---cccchhhccCCCCCCEEECcCcc-CccccchhccCCCCCC
Q 041683 97 FSMRFTKLSQDISEILGIFSACVANELESLRLGSSQI---FGHLTNQLRRFKRLNSLDLSNTI-LDGSIPFSLGQISNLE 172 (743)
Q Consensus 97 L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~---~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 172 (743)
|++++|.+..+... ..-....++|..|+++++.- ...+..--.++++|.+||||+|. ++......|.+++.|+
T Consensus 265 LNlsWc~l~~~~Vt---v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVT---VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred cCchHhhccchhhh---HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 99999987654322 22222334788899887642 22223334578899999998764 4433344667788889
Q ss_pred EEEccCCCCccccCh--hhhcCCCCCCEEECCCC
Q 041683 173 YLDLSNNKLNGTVSE--IHFVNLTKLAFFRANGN 204 (743)
Q Consensus 173 ~L~L~~n~l~~~~~~--~~~~~l~~L~~L~l~~n 204 (743)
+|.++.|.. .+|. ..+...+.|.+|++.++
T Consensus 342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 998888873 3333 12445556666665543
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=2.5e-09 Score=112.82 Aligned_cols=107 Identities=30% Similarity=0.370 Sum_probs=67.0
Q ss_pred cccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCC-CCCCCCccEEECcCCcCCCCCCccccCcCCCCee
Q 041683 518 LNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN-IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHL 596 (743)
Q Consensus 518 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 596 (743)
++.++.|||++|+++... .+..++.|++|||++|.+. .+|.. ...+ .|+.|.+++|.++.. ..+++|.+|+.|
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhcc
Confidence 344577777777776432 5677777777777777777 44432 2222 377777777777633 346677777777
Q ss_pred eCcCCcccccCC--CCcccCCCCCccccCCCCCCCC
Q 041683 597 NLSNNNLVGKIP--SSTQLQSFGASSFAGNDLCGDP 630 (743)
Q Consensus 597 ~ls~N~l~~~~p--~~~~~~~l~~~~~~~n~l~~~~ 630 (743)
|+++|-+.+.-. ..+.+..+..+.++||++|-.|
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 777777665321 1133445556677777776544
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.56 E-value=1.7e-09 Score=114.06 Aligned_cols=181 Identities=29% Similarity=0.293 Sum_probs=121.3
Q ss_pred CccccCCCCCcEEEccCccccccCCcccCCC-CCCCEEeCCCCcCc----------ccCchhHHhcccCCcEEEccCCcC
Q 041683 369 PMSIGTLSSLLSLNLRNNILSGIIPTSFKNF-SSLEVLDLGENELV----------GSIPSWIGERFSILKILNLRSNKF 437 (743)
Q Consensus 369 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~----------~~~~~~~~~~l~~L~~L~L~~n~l 437 (743)
|-.+..+.+|+.|.+++|.+... ..+..+ .+|++|.-. |.+. |.+..... ...|...+.++|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPV--WNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchh--hhhHhhhhcchhhH
Confidence 44566778999999999988742 122222 234444322 2111 11111110 22577888899988
Q ss_pred cccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcc
Q 041683 438 HGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSI 517 (743)
Q Consensus 438 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (743)
. .....+.-++.|+.|||++|++...- .+..
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~---------------------------------------------- 207 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTKVD--NLRR---------------------------------------------- 207 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhhhH--HHHh----------------------------------------------
Confidence 8 56667888899999999999887211 2222
Q ss_pred cccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCC-ccccCcCCCCee
Q 041683 518 LNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIP-QSMSNLSFLNHL 596 (743)
Q Consensus 518 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L 596 (743)
++.|+.|||++|.+....--...++. |+.|+|++|.++ .+ ..+.++.+|+.||+++|-|++.-- .-+..|..|+.|
T Consensus 208 l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L 284 (1096)
T KOG1859|consen 208 LPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL 284 (1096)
T ss_pred cccccccccccchhccccccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence 44569999999999843322334444 999999999998 33 347889999999999999875422 234567889999
Q ss_pred eCcCCccccc
Q 041683 597 NLSNNNLVGK 606 (743)
Q Consensus 597 ~ls~N~l~~~ 606 (743)
.|.+||+.+.
T Consensus 285 ~LeGNPl~c~ 294 (1096)
T KOG1859|consen 285 WLEGNPLCCA 294 (1096)
T ss_pred hhcCCccccC
Confidence 9999999654
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=4.7e-08 Score=81.83 Aligned_cols=87 Identities=24% Similarity=0.352 Sum_probs=61.4
Q ss_pred ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683 521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN 600 (743)
Q Consensus 521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 600 (743)
++.|++++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..+.++-.||..+|.+. .+|-.+-.-+..-..++.+
T Consensus 79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgn 155 (177)
T KOG4579|consen 79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGN 155 (177)
T ss_pred hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcC
Confidence 466777777776 66777888888888888888887 66777777888888888888887 4443333334444556677
Q ss_pred CcccccCCCC
Q 041683 601 NNLVGKIPSS 610 (743)
Q Consensus 601 N~l~~~~p~~ 610 (743)
+++.+..|..
T Consensus 156 epl~~~~~~k 165 (177)
T KOG4579|consen 156 EPLGDETKKK 165 (177)
T ss_pred CcccccCccc
Confidence 7777776654
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.4e-08 Score=94.69 Aligned_cols=85 Identities=24% Similarity=0.171 Sum_probs=40.7
Q ss_pred CCEEECCCCcCcc-cCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCc-CcccCchhHHhcccCCcEEE
Q 041683 354 LRALNLGHNNFTG-SLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENE-LVGSIPSWIGERFSILKILN 431 (743)
Q Consensus 354 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~ 431 (743)
|++||||+-.|+. ..-..++.|.+|+.|.+.++++.+-+...++...+|+.|+++.+. ++..--..++..++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5555555544441 111223445555555555555554444455555555555555543 22111223334455555555
Q ss_pred ccCCcCc
Q 041683 432 LRSNKFH 438 (743)
Q Consensus 432 L~~n~l~ 438 (743)
++.|.+.
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 5555544
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.19 E-value=1e-07 Score=79.82 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=36.4
Q ss_pred CCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccc
Q 041683 398 NFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS 462 (743)
Q Consensus 398 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 462 (743)
....|+..+|++|.+. .+|..+...++.++.|++++|+++ .+|..+..++.|+.|+++.|++.
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 3344555566666665 555555545555666666666665 45555666666666666666554
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=2.7e-07 Score=87.66 Aligned_cols=82 Identities=23% Similarity=0.228 Sum_probs=46.0
Q ss_pred cccccEEEccCCcCcccC-chhhcccCCCCEEeCCCCcCcc-cCCCCCCCCCCccEEECcCCcCCCCCCc------cccC
Q 041683 518 LNLVRSIDVSKNIFSGEI-PVEVTNLQGLQSLNLSHNLLTG-RIPDNIGVMRSIESLDLSANQLSGQIPQ------SMSN 589 (743)
Q Consensus 518 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~------~l~~ 589 (743)
++++..+-+..|.+.... -..+..++.+-.|+|+.|+|.. ..-+++..+++|..|.+++|.+...+.. .++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 455566666666554322 2234556666677777777753 1124466677777777777777533221 1345
Q ss_pred cCCCCeeeCc
Q 041683 590 LSFLNHLNLS 599 (743)
Q Consensus 590 l~~L~~L~ls 599 (743)
+++++.|+=+
T Consensus 278 L~~v~vLNGs 287 (418)
T KOG2982|consen 278 LTKVQVLNGS 287 (418)
T ss_pred ccceEEecCc
Confidence 5666665543
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=1.8e-07 Score=87.64 Aligned_cols=62 Identities=24% Similarity=0.255 Sum_probs=27.5
Q ss_pred CCccEEECcCCcCcccCC-----ccccCCCCCCEEECCCCcCccc----CCccccCCCCCcEEEccCcccc
Q 041683 328 NNIEFLKLSKNNFSGDIP-----DCWMNWLRLRALNLGHNNFTGS----LPMSIGTLSSLLSLNLRNNILS 389 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~ 389 (743)
.+|+.+.+..|.|.-..- ..+..+.+|+.|||..|.++.. ...++...+.|++|.+.+|-++
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 356666666665541100 1122345555555555555421 1122333344555555555444
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=9.6e-07 Score=82.90 Aligned_cols=217 Identities=12% Similarity=0.152 Sum_probs=106.2
Q ss_pred CCCCCCEEEcCCCccccc----cCcccccCCCCCCEEEcCCCCcCCcc-----------cchhccCCCCCCEEEccCCcC
Q 041683 40 KVNDLEFLSVYSNRLQGN----VSSLGLENLTSIKRLYLSENDELGGK-----------IPTSFGKLCKLTSFSMRFTKL 104 (743)
Q Consensus 40 ~l~~L~~L~Ls~n~l~~~----~~~~~~~~l~~L~~L~Ls~~~~l~~~-----------~~~~l~~l~~L~~L~L~~n~l 104 (743)
.+..+..++||+|.|... +.. .+.+-.+|+..+++ . .+++. +..++.+|++|+..+|+.|.+
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~-~ia~~~~L~vvnfs-d-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCN-VIANVRNLRVVNFS-D-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHH-HHhhhcceeEeehh-h-hhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 355566666666655421 111 23444556666655 1 12221 123456777777777777777
Q ss_pred cccchhhhhcccccccCCccEEEccCCcCccc----chh---------hccCCCCCCEEECcCccCccccc----hhccC
Q 041683 105 SQDISEILGIFSACVANELESLRLGSSQIFGH----LTN---------QLRRFKRLNSLDLSNTILDGSIP----FSLGQ 167 (743)
Q Consensus 105 ~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~----~~~---------~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~ 167 (743)
....|+.++.+-. ....|++|.+++|.+--. +.. -...-|.|++.....|++..-.. ..|..
T Consensus 105 g~~~~e~L~d~is-~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 105 GSEFPEELGDLIS-SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred CcccchHHHHHHh-cCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 6665554443321 112677777777765211 111 12234567777777766642111 12222
Q ss_pred CCCCCEEEccCCCCccc----cChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCC
Q 041683 168 ISNLEYLDLSNNKLNGT----VSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRE 243 (743)
Q Consensus 168 l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 243 (743)
-..|+++.+.+|.|.-. +.-..+..+.+|+.||+..|.++..... .....+...+.
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~--------------------~La~al~~W~~ 243 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR--------------------YLADALCEWNL 243 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH--------------------HHHHHhcccch
Confidence 34666777777766411 1111234455566666666554422110 12223333445
Q ss_pred CCEEEccCCCCccccChhhhhh-----cccCceEecccCccc
Q 041683 244 LNDLDISSTRISAKIPRGFWNS-----IYQYFYLNISGNQIY 280 (743)
Q Consensus 244 L~~L~l~~n~i~~~~~~~~~~~-----l~~L~~L~l~~n~l~ 280 (743)
|++|.+.+|-++......++.. .++|..|-..+|.+.
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 6666666666654444333322 345556666666544
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=1.1e-06 Score=83.59 Aligned_cols=212 Identities=18% Similarity=0.155 Sum_probs=97.8
Q ss_pred CCCCCEEECCCCCCCCCC-chhh-cCCCCCCEEEcCCCcccc--ccCcccccCCCCCCEEEcCCCCcCCcccchhccCCC
Q 041683 17 LTSLKYLDLSSNELNSTV-LGWL-SKVNDLEFLSVYSNRLQG--NVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLC 92 (743)
Q Consensus 17 l~~L~~L~Ls~n~l~~~~-~~~~-~~l~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~ 92 (743)
..-++.|-+.++.|..+. ...| ..+++++.|||.+|.|++ .+.. .+.++|.|++|+|+ +|.+...+..--....
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls-~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLS-CNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeecc-CCcCCCccccCccccc
Confidence 334445555666664432 1223 345677778888887762 1222 35677777777777 5555433322223455
Q ss_pred CCCEEEccCCcCcccch-hhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCC
Q 041683 93 KLTSFSMRFTKLSQDIS-EILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNL 171 (743)
Q Consensus 93 ~L~~L~L~~n~l~~~~~-~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (743)
+|+.|.|.+..+.-... ..+..++ .+++|+++.|.+ +.+++..+.+...- +.+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP-----~vtelHmS~N~~--------------rq~n~Dd~c~e~~s-------~~v 175 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLP-----KVTELHMSDNSL--------------RQLNLDDNCIEDWS-------TEV 175 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcch-----hhhhhhhccchh--------------hhhccccccccccc-------hhh
Confidence 66666666655543211 2223333 445555544422 11122222221110 122
Q ss_pred CEEEccCCCCccccChh-hhcCCCCCCEEECCCCcceeecC-CCCCCCccccEEEcCCCcCCC-CcchhhcCCCCCCEEE
Q 041683 172 EYLDLSNNKLNGTVSEI-HFVNLTKLAFFRANGNSLIFKIN-PNWVPPFQLTVLELRSCHLGP-RFPLWLQSQRELNDLD 248 (743)
Q Consensus 172 ~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~ 248 (743)
++|.+-.|......... .-.-.+++..+.+..|++..... ..+.+.+.+.-|+++.+++.. ...+.+.++++|..|.
T Consensus 176 ~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlR 255 (418)
T KOG2982|consen 176 LTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLR 255 (418)
T ss_pred hhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheee
Confidence 33333222211000000 01112344445555554432221 233444445556666666543 2234566777777777
Q ss_pred ccCCCCcc
Q 041683 249 ISSTRISA 256 (743)
Q Consensus 249 l~~n~i~~ 256 (743)
++++.+.+
T Consensus 256 v~~~Pl~d 263 (418)
T KOG2982|consen 256 VSENPLSD 263 (418)
T ss_pred ccCCcccc
Confidence 77777754
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=4.3e-05 Score=78.64 Aligned_cols=76 Identities=13% Similarity=0.197 Sum_probs=51.4
Q ss_pred ccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCC-cCcccCCccccCCCC
Q 041683 372 IGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSN-KFHGDFPIQLCGLAF 450 (743)
Q Consensus 372 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 450 (743)
+..+.+++.|++++|.++.. |. -.++|++|.+++|.-...+|..+ .++|+.|++++| .+. .+| .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cc
Confidence 44568899999999987743 41 23469999998865444667543 357889999988 444 344 34
Q ss_pred ccEEEccCCcc
Q 041683 451 LQILDVASNSL 461 (743)
Q Consensus 451 L~~L~Ls~N~l 461 (743)
|+.|+++++..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 77777776554
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=6.6e-06 Score=55.95 Aligned_cols=35 Identities=37% Similarity=0.664 Sum_probs=14.0
Q ss_pred CCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCC
Q 041683 545 LQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLS 580 (743)
Q Consensus 545 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (743)
|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444443
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=4.4e-05 Score=69.04 Aligned_cols=104 Identities=23% Similarity=0.205 Sum_probs=64.0
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCch-hHHhcccCCcEEE
Q 041683 353 RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS-WIGERFSILKILN 431 (743)
Q Consensus 353 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~~l~~L~~L~ 431 (743)
....+||++|.+... ..|..++.|.+|.+.+|+|+.+.|.--.-+++|..|.+.+|.|. .+.+ .-...++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 456677777776522 34666677777777777777666655555566777777777664 2211 1112467777777
Q ss_pred ccCCcCcccC---CccccCCCCccEEEccCC
Q 041683 432 LRSNKFHGDF---PIQLCGLAFLQILDVASN 459 (743)
Q Consensus 432 L~~n~l~~~~---~~~~~~l~~L~~L~Ls~N 459 (743)
+-+|.+...- -..+..+++|+.||..+=
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777765321 124667888888887654
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.9e-05 Score=52.82 Aligned_cols=36 Identities=44% Similarity=0.683 Sum_probs=19.3
Q ss_pred CCCEEECcCccCccccchhccCCCCCCEEEccCCCCc
Q 041683 146 RLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182 (743)
Q Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 182 (743)
+|++|++++|.|+ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666655 33444556666666666666555
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.58 E-value=0.00011 Score=66.56 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=61.6
Q ss_pred CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683 122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA 201 (743)
Q Consensus 122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 201 (743)
+...+||++|.+... ..|..++.|.+|.+.+|.|+.+.|.--.-+++|..|.|.+|.|...-.-..+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 667788888887433 237788888999999999987766554556788889999988873222234677778888888
Q ss_pred CCCccee
Q 041683 202 NGNSLIF 208 (743)
Q Consensus 202 ~~n~~~~ 208 (743)
-+|+++.
T Consensus 121 l~Npv~~ 127 (233)
T KOG1644|consen 121 LGNPVEH 127 (233)
T ss_pred cCCchhc
Confidence 8877653
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.57 E-value=0.00018 Score=63.22 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccC
Q 041683 11 PSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGK 90 (743)
Q Consensus 11 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~ 90 (743)
..+|.++++|+.+.+.. .+..+...+|.++++|+.+++..+ +. .++..+|.++++|+.+.+. + .+......+|..
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~-~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFP-N-NLKSIGDNAFSN 79 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEET-S-TT-EE-TTTTTT
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccc-c-cccccccccccc
Confidence 45777888888888774 566667777888877888888775 55 5666677777778888876 3 333333445666
Q ss_pred CCCCCEEEccC
Q 041683 91 LCKLTSFSMRF 101 (743)
Q Consensus 91 l~~L~~L~L~~ 101 (743)
+++|+.+++..
T Consensus 80 ~~~l~~i~~~~ 90 (129)
T PF13306_consen 80 CTNLKNIDIPS 90 (129)
T ss_dssp -TTECEEEETT
T ss_pred cccccccccCc
Confidence 66666666543
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.56 E-value=0.00021 Score=62.87 Aligned_cols=120 Identities=21% Similarity=0.189 Sum_probs=56.6
Q ss_pred CCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCE
Q 041683 325 NFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV 404 (743)
Q Consensus 325 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 404 (743)
..+++|+.+.+.. .+..+....|..+++|+.+.+.++ +......+|.++++++.+.+.+ .+.......|..+++|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 3455677777764 455566667777777777777664 5545556677776777777765 444455566777777777
Q ss_pred EeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCc
Q 041683 405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFL 451 (743)
Q Consensus 405 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 451 (743)
+++..+ +. .++...+.++ .|+.+.+.. .+..+....|.++++|
T Consensus 86 i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 777654 43 4555555454 667666665 3333444456555554
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.47 E-value=0.00035 Score=72.09 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=62.7
Q ss_pred ccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCC-cCcccCchhHHhcccC
Q 041683 348 WMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN-ELVGSIPSWIGERFSI 426 (743)
Q Consensus 348 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~ 426 (743)
+..+.+++.|++++|.++ .+|. + .++|++|.+++|.-....|+.+ .++|+.|++++| .+. .+| ++
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-------cc
Confidence 445688999999999888 4552 2 3479999999875444666655 368999999999 444 454 35
Q ss_pred CcEEEccCCcCcccCCccccCC-CCccEEEccC
Q 041683 427 LKILNLRSNKFHGDFPIQLCGL-AFLQILDVAS 458 (743)
Q Consensus 427 L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~ 458 (743)
|+.|+++++.... +..+ ++|+.|.+.+
T Consensus 114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~ 141 (426)
T PRK15386 114 VRSLEIKGSATDS-----IKNVPNGLTSLSINS 141 (426)
T ss_pred cceEEeCCCCCcc-----cccCcchHhheeccc
Confidence 7888887765531 1222 2566777654
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=6.9e-05 Score=84.11 Aligned_cols=186 Identities=23% Similarity=0.290 Sum_probs=107.7
Q ss_pred CCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccc-------cC-----cccc--cCCCCCCEEEcCCCCcCC
Q 041683 16 NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGN-------VS-----SLGL--ENLTSIKRLYLSENDELG 81 (743)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~-----~~~~--~~l~~L~~L~Ls~~~~l~ 81 (743)
..-++...++.+..+.....+...... |++|.|.+-..... +. ...+ ..-.+|++||+++...+.
T Consensus 58 ~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s 136 (699)
T KOG3665|consen 58 RKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFS 136 (699)
T ss_pred hhheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhh
Confidence 333556666666655444444444444 66666654321110 00 0011 123578888888654444
Q ss_pred cccchhcc-CCCCCCEEEccCCcCccc-chhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCcc
Q 041683 82 GKIPTSFG-KLCKLTSFSMRFTKLSQD-ISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDG 159 (743)
Q Consensus 82 ~~~~~~l~-~l~~L~~L~L~~n~l~~~-~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 159 (743)
..-|..++ .+|.|++|.+++-.+... .......++ +|..||+++.+++.. ..++++++|++|.+.+=.+..
T Consensus 137 ~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFp-----NL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~ 209 (699)
T KOG3665|consen 137 NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFP-----NLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFES 209 (699)
T ss_pred ccHHHHHhhhCcccceEEecCceecchhHHHHhhccC-----ccceeecCCCCccCc--HHHhccccHHHHhccCCCCCc
Confidence 33344443 468888888877665432 223334444 888888888887544 567888888888887766553
Q ss_pred -ccchhccCCCCCCEEEccCCCCcccc--Ch---hhhcCCCCCCEEECCCCcceee
Q 041683 160 -SIPFSLGQISNLEYLDLSNNKLNGTV--SE---IHFVNLTKLAFFRANGNSLIFK 209 (743)
Q Consensus 160 -~~~~~~~~l~~L~~L~L~~n~l~~~~--~~---~~~~~l~~L~~L~l~~n~~~~~ 209 (743)
..-..+.++++|+.||+|........ .. ..-..+|+|+.||.+++.+...
T Consensus 210 ~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 210 YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 12235667888888888876654111 11 0124578888888888766543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.43 E-value=5.4e-05 Score=84.95 Aligned_cols=127 Identities=20% Similarity=0.148 Sum_probs=57.6
Q ss_pred CCCCCEEECcCccCccc-cchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCccee-ecCCCCCCCcccc
Q 041683 144 FKRLNSLDLSNTILDGS-IPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIF-KINPNWVPPFQLT 221 (743)
Q Consensus 144 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~ 221 (743)
+|+|++|.+++-.+... .-....++++|..||+|+.+++ .+. .++++++|+.|.+.+-.+.. ..-..+..+.+|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~--GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLS--GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcH--HHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 45555555544433211 1112234455555555555544 221 24455555555444433221 1111233344444
Q ss_pred EEEcCCCcCCCCc------chhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEe
Q 041683 222 VLELRSCHLGPRF------PLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLN 273 (743)
Q Consensus 222 ~L~l~~n~l~~~~------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~ 273 (743)
+||+|........ -+.-..+|+|+.||.|++.+.+.+-+.+...-++|+.+.
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 5554443322111 111234678888888888777655555544444554443
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.16 E-value=4.5e-05 Score=76.55 Aligned_cols=81 Identities=26% Similarity=0.256 Sum_probs=40.9
Q ss_pred CCCCCCEEECCCCcCc-cc----CCccccCCCCCcEEEccCcccc-ccCCcccCCCCCCCEEeCCCCcCcccCc-hhHHh
Q 041683 350 NWLRLRALNLGHNNFT-GS----LPMSIGTLSSLLSLNLRNNILS-GIIPTSFKNFSSLEVLDLGENELVGSIP-SWIGE 422 (743)
Q Consensus 350 ~l~~L~~L~Ls~n~l~-~~----~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~ 422 (743)
+++.|+.|.++++... .. ....-.++..|+.+.++++... +..-..+..+++|+.+++-+++-...-+ ..+..
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence 4455566655555432 11 0112234556777777777543 2333455667778887777775321211 12223
Q ss_pred cccCCcEE
Q 041683 423 RFSILKIL 430 (743)
Q Consensus 423 ~l~~L~~L 430 (743)
+++++++.
T Consensus 450 ~lp~i~v~ 457 (483)
T KOG4341|consen 450 HLPNIKVH 457 (483)
T ss_pred hCccceeh
Confidence 45555543
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.00 E-value=4.2e-05 Score=76.76 Aligned_cols=300 Identities=16% Similarity=0.045 Sum_probs=162.8
Q ss_pred CccEEEccCCcCcccch--hhccCCCCCCEEECcCccC-ccccchhc-cCCCCCCEEEccCCC-CccccChhhhcCCCCC
Q 041683 122 ELESLRLGSSQIFGHLT--NQLRRFKRLNSLDLSNTIL-DGSIPFSL-GQISNLEYLDLSNNK-LNGTVSEIHFVNLTKL 196 (743)
Q Consensus 122 ~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L 196 (743)
.|+.|.++++.-.+.-+ ....+++++++|++.++.. ++..-..+ ..+++|++|++..|. ++...-...-..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57777777766433322 2345677788887777652 22211122 346778888887743 3322211123467778
Q ss_pred CEEECCCCcceee--cCCCCCCCccccEEEcCCCcCCCC--cchhhcCCCCCCEEEccCCC-CccccChhhhhhcccCce
Q 041683 197 AFFRANGNSLIFK--INPNWVPPFQLTVLELRSCHLGPR--FPLWLQSQRELNDLDISSTR-ISAKIPRGFWNSIYQYFY 271 (743)
Q Consensus 197 ~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~ 271 (743)
++++++.+.-... +..-+.+...++.+.+.+|.-.+. +...-..+..+..+++.+|. +++.---.+...+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 8888877643211 111223344456665665532110 11111334556677766663 332221223334567788
Q ss_pred EecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCccc-CCcc-cc
Q 041683 272 LNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGD-IPDC-WM 349 (743)
Q Consensus 272 L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~-~~ 349 (743)
++.+++.-.+..+ +..--..+++|+.|-++.++.-+. --.. -.
T Consensus 299 l~~s~~t~~~d~~-----------------------------------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 299 LCYSSCTDITDEV-----------------------------------LWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred hcccCCCCCchHH-----------------------------------HHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 8877664221110 000112357888888888863211 1111 13
Q ss_pred CCCCCCEEECCCCcCc--ccCCccccCCCCCcEEEccCccccccC-----CcccCCCCCCCEEeCCCCcCcccCchhHHh
Q 041683 350 NWLRLRALNLGHNNFT--GSLPMSIGTLSSLLSLNLRNNILSGII-----PTSFKNFSSLEVLDLGENELVGSIPSWIGE 422 (743)
Q Consensus 350 ~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 422 (743)
+++.|+.+++..+... +.+...-.+++.|+.|.+++|...... ...-..+..|+.+.+++++...+-.-....
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 5678999999887644 122233346889999999998643221 222345678999999999865222222234
Q ss_pred cccCCcEEEccCCcCccc--CCccccCCCCccEEEc
Q 041683 423 RFSILKILNLRSNKFHGD--FPIQLCGLAFLQILDV 456 (743)
Q Consensus 423 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L 456 (743)
.+++|+.+++-+++-... +...-..+|+++..-+
T Consensus 424 ~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 678999999988764322 2223346777766543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.001 Score=63.18 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=27.0
Q ss_pred CCCCCEEECCCCcCcccCCccccCCCCCcEEEccCc--cccccCCcccCCCCCCCEEeCCCCcCc
Q 041683 351 WLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNN--ILSGIIPTSFKNFSSLEVLDLGENELV 413 (743)
Q Consensus 351 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~ 413 (743)
+..|+.|++.+..++.. ..|..+++|++|.++.| ++.+-++.....+++|+++++++|+|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33444444444444321 12333445555555555 333333333334455555555555543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=9.3e-05 Score=70.17 Aligned_cols=101 Identities=23% Similarity=0.206 Sum_probs=76.3
Q ss_pred CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCC-cccCCCCCCCEE
Q 041683 327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIP-TSFKNFSSLEVL 405 (743)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L 405 (743)
+.+.++|+..+|.+..+ .....++.|+.|.||-|+|+.. ..+..|++|++|+|..|.|.++.. ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45688999999998854 3456789999999999999854 347889999999999999875422 346788999999
Q ss_pred eCCCCcCcccCchh----HHhcccCCcEEE
Q 041683 406 DLGENELVGSIPSW----IGERFSILKILN 431 (743)
Q Consensus 406 ~Ls~n~i~~~~~~~----~~~~l~~L~~L~ 431 (743)
+|..|+-.+.-+.. +...+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999876655432 233467777765
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.50 E-value=0.0017 Score=61.76 Aligned_cols=57 Identities=26% Similarity=0.322 Sum_probs=29.8
Q ss_pred CccEEEccCCcCcc-cchhhccCCCCCCEEECcCccCcccc---chhccCCCCCCEEEccC
Q 041683 122 ELESLRLGSSQIFG-HLTNQLRRFKRLNSLDLSNTILDGSI---PFSLGQISNLEYLDLSN 178 (743)
Q Consensus 122 ~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~ 178 (743)
+|++|++++|++.. .--..+..+++|..|++.+|..+... -..|.-+++|++||-..
T Consensus 92 ~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 92 NLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred ceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 45555555554421 00012445666777777777665421 12455567777776443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0002 Score=68.02 Aligned_cols=83 Identities=23% Similarity=0.263 Sum_probs=42.7
Q ss_pred CCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCc-ccchhccCCCCCC
Q 041683 17 LTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGG-KIPTSFGKLCKLT 95 (743)
Q Consensus 17 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~-~~~~~l~~l~~L~ 95 (743)
+.+.+.|++=++.++++ ....+++.|++|.||-|.|+ .+. .|.+|++|+.|+|..|+ +.. ..-..+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence 34455566666655443 22445666666666666665 444 25666666666666332 221 1122345555555
Q ss_pred EEEccCCcCc
Q 041683 96 SFSMRFTKLS 105 (743)
Q Consensus 96 ~L~L~~n~l~ 105 (743)
.|.|..|.-.
T Consensus 92 ~LWL~ENPCc 101 (388)
T KOG2123|consen 92 TLWLDENPCC 101 (388)
T ss_pred hHhhccCCcc
Confidence 5555555433
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.57 E-value=0.003 Score=69.83 Aligned_cols=59 Identities=31% Similarity=0.289 Sum_probs=25.3
Q ss_pred CccEEEccCCc-Ccccchhhcc-CCCCCCEEECcCcc-Cccccchh-ccCCCCCCEEEccCCC
Q 041683 122 ELESLRLGSSQ-IFGHLTNQLR-RFKRLNSLDLSNTI-LDGSIPFS-LGQISNLEYLDLSNNK 180 (743)
Q Consensus 122 ~L~~L~L~~n~-~~~~~~~~l~-~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n~ 180 (743)
+|+.|+++++. ++...-..+. .+++|++|.+.++. +++..-.. ...++.|++|+++++.
T Consensus 244 ~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 244 KLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 45555555554 3222222222 24555555554444 33221111 2234555555555554
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.55 E-value=0.0033 Score=69.46 Aligned_cols=112 Identities=19% Similarity=0.037 Sum_probs=48.3
Q ss_pred CCCCCEEEcCCCccccc--cCcccccCCCCCCEEEcCCCCcCCccc----chhccCCCCCCEEEccCCc-Ccccchhhhh
Q 041683 41 VNDLEFLSVYSNRLQGN--VSSLGLENLTSIKRLYLSENDELGGKI----PTSFGKLCKLTSFSMRFTK-LSQDISEILG 113 (743)
Q Consensus 41 l~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~~L~Ls~~~~l~~~~----~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~ 113 (743)
+++|+.|.+..+.-... +.. ....++.|+.|+++++....... ......+.+|+.|+++.+. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDA-LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHH-HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 45566665555532212 111 34455566666665311111111 1123344556666665555 3322222222
Q ss_pred cccccccCCccEEEccCCc-Ccccch-hhccCCCCCCEEECcCccC
Q 041683 114 IFSACVANELESLRLGSSQ-IFGHLT-NQLRRFKRLNSLDLSNTIL 157 (743)
Q Consensus 114 ~l~~~~~~~L~~L~L~~n~-~~~~~~-~~l~~l~~L~~L~Ls~n~l 157 (743)
.. +++|++|.+.+|. ++...- .....+++|++|+++++..
T Consensus 266 ~~----c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SR----CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hh----CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 21 1156666655555 322221 1223455666666665544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.25 E-value=0.0071 Score=34.01 Aligned_cols=11 Identities=55% Similarity=0.549 Sum_probs=4.5
Q ss_pred CEEeCCCCcCc
Q 041683 546 QSLNLSHNLLT 556 (743)
Q Consensus 546 ~~L~Ls~N~l~ 556 (743)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.11 E-value=0.0083 Score=33.73 Aligned_cols=21 Identities=57% Similarity=0.835 Sum_probs=12.3
Q ss_pred CccEEECcCCcCCCCCCccccC
Q 041683 568 SIESLDLSANQLSGQIPQSMSN 589 (743)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~l~~ 589 (743)
+|++||+++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 45554543
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.08 E-value=0.00044 Score=74.28 Aligned_cols=89 Identities=25% Similarity=0.203 Sum_probs=47.8
Q ss_pred CCCCCcEEEccCccccccC----CcccCCCCC-CCEEeCCCCcCcccCchhHHh---cc-cCCcEEEccCCcCcccCC--
Q 041683 374 TLSSLLSLNLRNNILSGII----PTSFKNFSS-LEVLDLGENELVGSIPSWIGE---RF-SILKILNLRSNKFHGDFP-- 442 (743)
Q Consensus 374 ~l~~L~~L~L~~n~i~~~~----~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~---~l-~~L~~L~L~~n~l~~~~~-- 442 (743)
...++++|.+++|.++... ...+...++ +..+++..|.+.+..-..... .+ ..++.++++.|.+...-.
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 3556666666666655211 122333444 556777777665332222211 12 345677777777764322
Q ss_pred --ccccCCCCccEEEccCCccc
Q 041683 443 --IQLCGLAFLQILDVASNSLS 462 (743)
Q Consensus 443 --~~~~~l~~L~~L~Ls~N~l~ 462 (743)
..+..++.++++.+++|.+.
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHhhhHHHHHhhcccCccc
Confidence 23445567777777777665
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.90 E-value=0.0022 Score=59.51 Aligned_cols=84 Identities=20% Similarity=0.236 Sum_probs=74.4
Q ss_pred cccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeee
Q 041683 518 LNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLN 597 (743)
Q Consensus 518 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 597 (743)
....+.||++.|++. .....|+-++.|..||++.|.+. ..|+.++.+..+..+++..|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 445688999999987 44556788899999999999998 88999999999999999999998 7899999999999999
Q ss_pred CcCCccc
Q 041683 598 LSNNNLV 604 (743)
Q Consensus 598 ls~N~l~ 604 (743)
+-+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999975
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.89 E-value=0.0011 Score=71.16 Aligned_cols=164 Identities=25% Similarity=0.219 Sum_probs=104.6
Q ss_pred EecCCccccccchhhccCCCCCCCccEEECcCCcCcccCC----ccccCC-CCCCEEECCCCcCccc----CCccccCCC
Q 041683 306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIP----DCWMNW-LRLRALNLGHNNFTGS----LPMSIGTLS 376 (743)
Q Consensus 306 ~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l-~~L~~L~Ls~n~l~~~----~~~~~~~l~ 376 (743)
++.+|.+.......++..+...+.|+.|++++|.+..... ..+... ..+++|++..|.++.. +...+....
T Consensus 93 ~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~ 172 (478)
T KOG4308|consen 93 SLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNE 172 (478)
T ss_pred hhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhccc
Confidence 3444444444556666777778889999999998873221 223332 5677788888887743 334555678
Q ss_pred CCcEEEccCccccc----cCCcccC----CCCCCCEEeCCCCcCcccCchhH---HhcccC-CcEEEccCCcCccc----
Q 041683 377 SLLSLNLRNNILSG----IIPTSFK----NFSSLEVLDLGENELVGSIPSWI---GERFSI-LKILNLRSNKFHGD---- 440 (743)
Q Consensus 377 ~L~~L~L~~n~i~~----~~~~~~~----~l~~L~~L~Ls~n~i~~~~~~~~---~~~l~~-L~~L~L~~n~l~~~---- 440 (743)
.++.++++.|.+.. ..+..+. ...++++|.+++|.++...-..+ ....+. +..+++..|.+...
T Consensus 173 ~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~ 252 (478)
T KOG4308|consen 173 HLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEK 252 (478)
T ss_pred chhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHH
Confidence 89999999998741 1222333 46789999999998863222111 112334 66789999988743
Q ss_pred CCccccCC-CCccEEEccCCccccccCccc
Q 041683 441 FPIQLCGL-AFLQILDVASNSLSGTIPRCI 469 (743)
Q Consensus 441 ~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~ 469 (743)
....+..+ ..++.++++.|.|...-...+
T Consensus 253 L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 253 LLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred HHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 22234555 678999999999886544433
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.58 E-value=0.076 Score=27.59 Aligned_cols=11 Identities=55% Similarity=0.794 Sum_probs=3.5
Q ss_pred CCEEeCCCCcC
Q 041683 545 LQSLNLSHNLL 555 (743)
Q Consensus 545 L~~L~Ls~N~l 555 (743)
|++|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.12 E-value=0.1 Score=27.13 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=4.9
Q ss_pred CCCEEEcCCCccc
Q 041683 43 DLEFLSVYSNRLQ 55 (743)
Q Consensus 43 ~L~~L~Ls~n~l~ 55 (743)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3445555555443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.02 E-value=0.15 Score=29.93 Aligned_cols=21 Identities=43% Similarity=0.524 Sum_probs=11.5
Q ss_pred CCCCEEECCCCCCCCCCchhh
Q 041683 18 TSLKYLDLSSNELNSTVLGWL 38 (743)
Q Consensus 18 ~~L~~L~Ls~n~l~~~~~~~~ 38 (743)
++|++|+|++|+|..+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455566666665555544444
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.02 E-value=0.15 Score=29.93 Aligned_cols=21 Identities=43% Similarity=0.524 Sum_probs=11.5
Q ss_pred CCCCEEECCCCCCCCCCchhh
Q 041683 18 TSLKYLDLSSNELNSTVLGWL 38 (743)
Q Consensus 18 ~~L~~L~Ls~n~l~~~~~~~~ 38 (743)
++|++|+|++|+|..+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455566666665555544444
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.18 E-value=0.045 Score=50.16 Aligned_cols=85 Identities=16% Similarity=0.092 Sum_probs=63.4
Q ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCccccc-CCCCCCEEEcCCCCcCCcccchhccCCCCCCEE
Q 041683 19 SLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLE-NLTSIKRLYLSENDELGGKIPTSFGKLCKLTSF 97 (743)
Q Consensus 19 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L 97 (743)
.++.+|-++..|..+.-+-+.+++.++.|.+.+|.--+..--..++ -.++|+.|++++|..+++.--..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4688999999888877778888899999999888643221100121 347899999998888888777788888888888
Q ss_pred EccCCc
Q 041683 98 SMRFTK 103 (743)
Q Consensus 98 ~L~~n~ 103 (743)
.+.+-.
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 876543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.69 E-value=0.26 Score=28.89 Aligned_cols=14 Identities=57% Similarity=0.731 Sum_probs=7.3
Q ss_pred CCccEEECcCCcCC
Q 041683 567 RSIESLDLSANQLS 580 (743)
Q Consensus 567 ~~L~~L~Ls~N~l~ 580 (743)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.69 E-value=0.26 Score=28.89 Aligned_cols=14 Identities=57% Similarity=0.731 Sum_probs=7.3
Q ss_pred CCccEEECcCCcCC
Q 041683 567 RSIESLDLSANQLS 580 (743)
Q Consensus 567 ~~L~~L~Ls~N~l~ 580 (743)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.10 E-value=0.0081 Score=55.89 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=70.7
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCC
Q 041683 12 SRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKL 91 (743)
Q Consensus 12 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l 91 (743)
..+..+...+.||++.|++... -.-|..++.|..||++.|.+. ..|. .+.....++++++.+||. ...|.++++.
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~--~~~p~s~~k~ 110 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNH--SQQPKSQKKE 110 (326)
T ss_pred hhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccch--hhCCcccccc
Confidence 5677888889999999887443 345777888899999999987 7777 788888888888884443 3678889999
Q ss_pred CCCCEEEccCCcCcc
Q 041683 92 CKLTSFSMRFTKLSQ 106 (743)
Q Consensus 92 ~~L~~L~L~~n~l~~ 106 (743)
++++++++..+.+..
T Consensus 111 ~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFFR 125 (326)
T ss_pred CCcchhhhccCcchH
Confidence 999999988887543
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.97 E-value=0.18 Score=46.43 Aligned_cols=82 Identities=13% Similarity=0.107 Sum_probs=35.8
Q ss_pred CCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCc-hhHHhcccCCcEEEccCC-cCcccCCccccCCCCccEE
Q 041683 377 SLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIP-SWIGERFSILKILNLRSN-KFHGDFPIQLCGLAFLQIL 454 (743)
Q Consensus 377 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 454 (743)
.++.++.++..|..+.-+.+.+++.++.|.+.+|.-.+..- ..+..-.++|+.|++++| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34445555555544444444555555555555553211100 011112345555555554 2332222234455555555
Q ss_pred EccC
Q 041683 455 DVAS 458 (743)
Q Consensus 455 ~Ls~ 458 (743)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5544
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.61 E-value=0.28 Score=28.09 Aligned_cols=13 Identities=46% Similarity=0.687 Sum_probs=4.9
Q ss_pred CCCEEECcCccCc
Q 041683 146 RLNSLDLSNTILD 158 (743)
Q Consensus 146 ~L~~L~Ls~n~l~ 158 (743)
+|++|+|++|.|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=81.27 E-value=4.6 Score=42.40 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=17.1
Q ss_pred ccEEEccCCcCcccCch---hhcccCCCCEEeCCCCcCc
Q 041683 521 VRSIDVSKNIFSGEIPV---EVTNLQGLQSLNLSHNLLT 556 (743)
Q Consensus 521 L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~ 556 (743)
+..+.++.|.+...... .+..-+.+..|++++|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 34555555555422111 1233455666666666554
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.78 E-value=2.3 Score=24.96 Aligned_cols=13 Identities=54% Similarity=0.738 Sum_probs=6.2
Q ss_pred CCCCEEECCCCCC
Q 041683 18 TSLKYLDLSSNEL 30 (743)
Q Consensus 18 ~~L~~L~Ls~n~l 30 (743)
++|++|+|++|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3444455555544
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.53 E-value=3.1 Score=24.33 Aligned_cols=13 Identities=54% Similarity=0.713 Sum_probs=6.6
Q ss_pred CCCEEeCCCCcCc
Q 041683 544 GLQSLNLSHNLLT 556 (743)
Q Consensus 544 ~L~~L~Ls~N~l~ 556 (743)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555554
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=69.45 E-value=25 Score=37.26 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=32.3
Q ss_pred CCEEECCCCcCcccCC---ccccCCCCCcEEEccCccccc----cCCcccCCCCCCCEEeCCCCcCc
Q 041683 354 LRALNLGHNNFTGSLP---MSIGTLSSLLSLNLRNNILSG----IIPTSFKNFSSLEVLDLGENELV 413 (743)
Q Consensus 354 L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~ 413 (743)
+..+.++.|....... .....-+.+.+|++++|.... .+|........++.+..+.|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 5556666666552111 123344567777777776542 33444554555666666666543
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.60 E-value=5.4 Score=23.82 Aligned_cols=14 Identities=43% Similarity=0.574 Sum_probs=7.8
Q ss_pred CCCCEEeCCCCcCc
Q 041683 543 QGLQSLNLSHNLLT 556 (743)
Q Consensus 543 ~~L~~L~Ls~N~l~ 556 (743)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34556666666554
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=59.17 E-value=6.3 Score=33.49 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=11.7
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhc
Q 041683 662 LYISMALGFVVGFWCFIGSLLIN 684 (743)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~ 684 (743)
.++++++|+++|++.+++.++|+
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYC 87 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHH
Confidence 34555566666555444443333
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=58.68 E-value=5.3 Score=51.47 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=25.9
Q ss_pred eCCCCcCcccCCCCCCCCCCccEEECcCCcCCC
Q 041683 549 NLSHNLLTGRIPDNIGVMRSIESLDLSANQLSG 581 (743)
Q Consensus 549 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 581 (743)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578888886666678888888888888888764
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=55.50 E-value=7.4 Score=33.91 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=10.3
Q ss_pred HHHHHHhhhhhhccchhhh
Q 041683 672 VGFWCFIGSLLINRRWRCK 690 (743)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~ 690 (743)
+.++++++.+.++||||.+
T Consensus 70 lLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 70 LLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHheeEEeecccC
Confidence 3344445555566777654
No 94
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=54.76 E-value=6.1 Score=25.88 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=8.1
Q ss_pred hhhhhhHHHHHHHHhhhhhh
Q 041683 664 ISMALGFVVGFWCFIGSLLI 683 (743)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~ 683 (743)
.++++.+++++.++..++++
T Consensus 15 ~~VvVPV~vI~~vl~~~l~~ 34 (40)
T PF08693_consen 15 VGVVVPVGVIIIVLGAFLFF 34 (40)
T ss_pred EEEEechHHHHHHHHHHhhe
Confidence 33444444444333333443
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.76 E-value=7.4 Score=41.84 Aligned_cols=14 Identities=36% Similarity=0.328 Sum_probs=7.5
Q ss_pred CCccEEECcCCcCc
Q 041683 328 NNIEFLKLSKNNFS 341 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~ 341 (743)
+.+..+.|++|++.
T Consensus 218 p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY 231 (585)
T ss_pred cceeeeecccchhh
Confidence 44555555555554
No 96
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=51.94 E-value=4.1 Score=35.64 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=7.4
Q ss_pred hhhhhhhhHHHHHHHH
Q 041683 662 LYISMALGFVVGFWCF 677 (743)
Q Consensus 662 ~~~~~~~~~~~~~~~~ 677 (743)
+++++++|+.+.++++
T Consensus 50 IVIGvVVGVGg~ill~ 65 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLG 65 (154)
T ss_pred EEEEEEecccHHHHHH
Confidence 4455555544443333
No 97
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=50.72 E-value=17 Score=23.39 Aligned_cols=9 Identities=33% Similarity=0.482 Sum_probs=3.5
Q ss_pred hhhHHHHHH
Q 041683 667 ALGFVVGFW 675 (743)
Q Consensus 667 ~~~~~~~~~ 675 (743)
.+|+++|+.
T Consensus 9 Iv~V~vg~~ 17 (38)
T PF02439_consen 9 IVAVVVGMA 17 (38)
T ss_pred HHHHHHHHH
Confidence 333444433
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.17 E-value=13 Score=40.09 Aligned_cols=80 Identities=25% Similarity=0.230 Sum_probs=47.8
Q ss_pred CCCCCCEEECCCCcCcccC--CccccCCCCCcEEEccCc--cccccCCcccC--CCCCCCEEeCCCCcCcccCch-----
Q 041683 350 NWLRLRALNLGHNNFTGSL--PMSIGTLSSLLSLNLRNN--ILSGIIPTSFK--NFSSLEVLDLGENELVGSIPS----- 418 (743)
Q Consensus 350 ~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~----- 418 (743)
+.+.+..++|++|++.... ...-...|+|+.|+|++| .+... ..+. +...|++|.+.+|++......
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 4567888889999876321 111223578999999999 44322 1222 234578899999988654422
Q ss_pred -hHHhcccCCcEEE
Q 041683 419 -WIGERFSILKILN 431 (743)
Q Consensus 419 -~~~~~l~~L~~L~ 431 (743)
.+.+.+|+|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 2223456665543
No 99
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=38.67 E-value=17 Score=21.12 Aligned_cols=9 Identities=22% Similarity=0.132 Sum_probs=3.5
Q ss_pred CCEEEcCCC
Q 041683 44 LEFLSVYSN 52 (743)
Q Consensus 44 L~~L~Ls~n 52 (743)
|++|+|++|
T Consensus 4 L~~L~l~~C 12 (26)
T smart00367 4 LRELDLSGC 12 (26)
T ss_pred CCEeCCCCC
Confidence 333333333
No 100
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=36.82 E-value=30 Score=27.43 Aligned_cols=28 Identities=7% Similarity=0.090 Sum_probs=16.7
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhccchhh
Q 041683 662 LYISMALGFVVGFWCFIGSLLINRRWRC 689 (743)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (743)
.+++.+.|+++.+++++++++++.||+.
T Consensus 43 pyLA~GGG~iLilIii~Lv~CC~~K~K~ 70 (98)
T PF07204_consen 43 PYLAAGGGLILILIIIALVCCCRAKHKT 70 (98)
T ss_pred HHhhccchhhhHHHHHHHHHHhhhhhhh
Confidence 4555555666666666666666666653
No 101
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=34.10 E-value=18 Score=29.49 Aligned_cols=10 Identities=10% Similarity=0.238 Sum_probs=4.3
Q ss_pred hhhhhhhhHH
Q 041683 662 LYISMALGFV 671 (743)
Q Consensus 662 ~~~~~~~~~~ 671 (743)
.+++++++.+
T Consensus 67 aiagi~vg~~ 76 (96)
T PTZ00382 67 AIAGISVAVV 76 (96)
T ss_pred cEEEEEeehh
Confidence 3444444443
No 102
>PTZ00370 STEVOR; Provisional
Probab=29.13 E-value=46 Score=32.79 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=12.0
Q ss_pred HHhhhhhhccchhhhHhHHHhh
Q 041683 676 CFIGSLLINRRWRCKYCHFLDR 697 (743)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~ 697 (743)
+++..+|.+||++..|++...+
T Consensus 271 liilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 271 LIILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred HHHHHHHHHHhhcchhHHHHHh
Confidence 3344455566666667665443
No 103
>PF15179 Myc_target_1: Myc target protein 1
Probab=27.72 E-value=47 Score=30.08 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=10.5
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhc
Q 041683 662 LYISMALGFVVGFWCFIGSLLIN 684 (743)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~ 684 (743)
+.++++||+++|.++.++..+..
T Consensus 25 F~vSm~iGLviG~li~~LltwlS 47 (197)
T PF15179_consen 25 FCVSMAIGLVIGALIWALLTWLS 47 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544443333333
No 104
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=24.44 E-value=51 Score=30.88 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=9.4
Q ss_pred hhhhhhhhHHHHHHHHhhhhh
Q 041683 662 LYISMALGFVVGFWCFIGSLL 682 (743)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~ 682 (743)
+++++++|+++++++++++++
T Consensus 39 I~iaiVAG~~tVILVI~i~v~ 59 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVL 59 (221)
T ss_pred eeeeeecchhhhHHHHHHHHH
Confidence 445555555444444333333
No 105
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.30 E-value=50 Score=43.37 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=24.9
Q ss_pred CCCCcCCCCCCCCCCCCCCCCEEECCCCCCC
Q 041683 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELN 31 (743)
Q Consensus 1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 31 (743)
|++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 6788888777778888888888888888764
No 106
>PRK01844 hypothetical protein; Provisional
Probab=22.75 E-value=87 Score=23.71 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=8.0
Q ss_pred hhhhhhccchhhhHhH
Q 041683 678 IGSLLINRRWRCKYCH 693 (743)
Q Consensus 678 ~~~~~~~~~~~~~~~~ 693 (743)
++.+++.+++..+|..
T Consensus 19 ~~Gff~ark~~~k~lk 34 (72)
T PRK01844 19 ALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555565555433
No 107
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=22.40 E-value=77 Score=24.41 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=7.2
Q ss_pred hhhhHHHHHHHHhhhhhhc
Q 041683 666 MALGFVVGFWCFIGSLLIN 684 (743)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~ 684 (743)
+++|+++.+++++.+++++
T Consensus 6 ~~~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhheeEEEEE
Confidence 3344433333333333333
No 108
>PRK00523 hypothetical protein; Provisional
Probab=22.24 E-value=91 Score=23.60 Aligned_cols=17 Identities=12% Similarity=0.004 Sum_probs=8.7
Q ss_pred HhhhhhhccchhhhHhH
Q 041683 677 FIGSLLINRRWRCKYCH 693 (743)
Q Consensus 677 ~~~~~~~~~~~~~~~~~ 693 (743)
+++.+++.+++..+|..
T Consensus 19 ~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 19 GIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555665555433
No 109
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=21.45 E-value=65 Score=21.11 Aligned_cols=13 Identities=38% Similarity=0.940 Sum_probs=7.1
Q ss_pred hhhhhhccchhhh
Q 041683 678 IGSLLINRRWRCK 690 (743)
Q Consensus 678 ~~~~~~~~~~~~~ 690 (743)
+.+.+.+++|..+
T Consensus 24 iva~~iYRKw~aR 36 (43)
T PF08114_consen 24 IVALFIYRKWQAR 36 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3445566677443
No 110
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.63 E-value=60 Score=31.93 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=7.4
Q ss_pred hhhhhhccchhhhHhH
Q 041683 678 IGSLLINRRWRCKYCH 693 (743)
Q Consensus 678 ~~~~~~~~~~~~~~~~ 693 (743)
+..+|.+||++..|++
T Consensus 277 iLYiWlyrrRK~swkh 292 (295)
T TIGR01478 277 ILYIWLYRRRKKSWKH 292 (295)
T ss_pred HHHHHHHHhhcccccc
Confidence 3344445554445543
Done!