Query 041683
Match_columns 743
No_of_seqs 754 out of 4310
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 16:19:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.4E-72 2.5E-76 647.8 46.1 612 10-638 92-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.5E-65 2.6E-69 589.1 42.0 607 1-630 57-720 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.1E-57 1.4E-61 520.1 48.6 555 2-624 12-619 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.8E-56 9.6E-61 513.2 51.1 552 1-609 32-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 8.9E-56 3.1E-60 502.2 40.8 510 3-610 21-566 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-55 6.5E-60 515.5 36.7 546 2-637 12-591 (844)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-54 8E-59 490.5 34.4 527 2-610 19-564 (606)
8 3t6q_A CD180 antigen; protein- 100.0 6E-53 2E-57 479.0 41.3 490 1-584 40-564 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-52 1.3E-56 472.4 37.9 525 20-626 13-557 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-51 5.3E-56 482.4 40.6 526 21-631 7-565 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 2.5E-49 8.4E-54 446.3 34.1 506 3-613 16-540 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-48 7.3E-53 436.3 32.6 488 2-610 13-516 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 1.5E-47 5.1E-52 431.7 33.3 485 1-585 35-536 (570)
14 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-45 6.5E-50 420.5 37.3 526 5-609 42-585 (635)
15 2z81_A CD282 antigen, TOLL-lik 100.0 5.5E-46 1.9E-50 416.7 31.9 464 67-626 26-509 (549)
16 4eco_A Uncharacterized protein 100.0 4.1E-47 1.4E-51 430.2 21.0 358 155-608 193-604 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-46 5.4E-51 417.8 24.7 443 42-609 21-486 (520)
18 4eco_A Uncharacterized protein 100.0 4.5E-47 1.5E-51 429.8 20.6 427 18-583 81-603 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 2.7E-45 9.1E-50 421.0 28.4 462 18-604 323-864 (876)
20 4ecn_A Leucine-rich repeat pro 100.0 1.7E-44 5.7E-49 414.4 24.7 387 1-461 330-818 (876)
21 4g8a_A TOLL-like receptor 4; l 100.0 4.7E-43 1.6E-47 400.7 33.9 529 21-626 34-579 (635)
22 2z7x_B TOLL-like receptor 1, v 100.0 4.3E-44 1.5E-48 398.2 22.9 457 45-626 3-480 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-43 4.8E-48 397.2 25.9 461 17-610 30-516 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 7.7E-40 2.6E-44 357.7 32.4 374 145-613 30-417 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-40 4.3E-45 373.2 24.8 459 40-626 29-509 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 1.4E-38 4.8E-43 347.8 34.5 385 21-467 13-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1.6E-39 5.5E-44 351.6 21.6 403 16-609 9-416 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 2.3E-37 7.8E-42 334.7 26.9 400 65-628 9-410 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-36 5.5E-41 328.3 26.5 368 5-471 29-396 (457)
30 2id5_A Lingo-1, leucine rich r 100.0 5.4E-36 1.8E-40 329.0 25.4 346 148-630 14-360 (477)
31 1o6v_A Internalin A; bacterial 100.0 8.7E-35 3E-39 317.8 32.9 345 16-438 44-388 (466)
32 1o6v_A Internalin A; bacterial 100.0 9.9E-35 3.4E-39 317.3 31.8 344 122-606 47-390 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 4.7E-35 1.6E-39 316.8 28.4 361 83-610 33-393 (457)
34 2id5_A Lingo-1, leucine rich r 100.0 4.1E-34 1.4E-38 314.0 30.8 322 21-415 14-335 (477)
35 1ogq_A PGIP-2, polygalacturona 100.0 6E-35 2E-39 300.8 19.3 258 328-634 50-312 (313)
36 3o6n_A APL1; leucine-rich repe 100.0 3E-33 1E-37 298.6 27.1 332 169-629 45-377 (390)
37 3o6n_A APL1; leucine-rich repe 100.0 1.6E-32 5.6E-37 292.8 27.9 310 17-414 44-353 (390)
38 3oja_B Anopheles plasmodium-re 100.0 1.2E-32 4.2E-37 309.9 27.5 333 169-630 51-384 (597)
39 4fmz_A Internalin; leucine ric 100.0 1.5E-31 5.2E-36 280.8 28.4 307 141-604 40-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 2.1E-31 7.3E-36 279.7 29.4 196 14-256 40-235 (347)
41 3oja_B Anopheles plasmodium-re 100.0 1.1E-31 3.9E-36 302.0 28.3 308 42-413 51-358 (597)
42 1ogq_A PGIP-2, polygalacturona 100.0 1E-31 3.6E-36 276.6 17.0 232 325-606 73-306 (313)
43 1z7x_W Ribonuclease inhibitor; 100.0 2.2E-33 7.4E-38 307.3 3.9 188 329-557 200-412 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 9.4E-34 3.2E-38 310.1 0.7 384 122-605 4-441 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 8E-30 2.7E-34 265.5 25.4 199 352-602 123-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 1.4E-29 4.8E-34 263.6 26.6 200 352-602 121-330 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-29 7.1E-34 262.4 25.3 218 19-254 34-253 (332)
48 1xku_A Decorin; proteoglycan, 100.0 5.3E-29 1.8E-33 259.2 27.9 197 19-256 32-230 (330)
49 3ogk_B Coronatine-insensitive 100.0 5E-30 1.7E-34 289.9 5.6 236 327-605 269-527 (592)
50 3zyi_A Leucine-rich repeat-con 100.0 1.4E-27 4.9E-32 259.5 24.8 234 327-609 74-308 (452)
51 2z66_A Variable lymphocyte rec 100.0 5.3E-28 1.8E-32 248.8 20.1 236 327-609 27-266 (306)
52 3zyj_A Leucine-rich repeat-con 100.0 2.1E-27 7.3E-32 257.2 24.1 234 327-609 63-297 (440)
53 3ogk_B Coronatine-insensitive 100.0 1.4E-29 4.8E-34 286.3 6.9 204 327-578 317-549 (592)
54 1ozn_A Reticulon 4 receptor; N 100.0 7.7E-28 2.6E-32 244.8 17.6 244 331-624 14-258 (285)
55 2z80_A TOLL-like receptor 2, v 99.9 4.8E-28 1.6E-32 254.4 14.3 259 328-609 52-319 (353)
56 2z80_A TOLL-like receptor 2, v 99.9 6.5E-28 2.2E-32 253.4 15.2 271 2-284 39-318 (353)
57 4fcg_A Uncharacterized protein 99.9 1.8E-27 6E-32 246.4 18.0 227 327-604 80-314 (328)
58 2z66_A Variable lymphocyte rec 99.9 6.5E-27 2.2E-31 240.7 20.5 271 2-284 15-291 (306)
59 1ozn_A Reticulon 4 receptor; N 99.9 3.7E-27 1.3E-31 239.8 17.6 236 327-610 31-267 (285)
60 4fcg_A Uncharacterized protein 99.9 1.3E-26 4.3E-31 240.0 18.3 223 350-624 79-311 (328)
61 3o53_A Protein LRIM1, AGAP0063 99.9 8.5E-28 2.9E-32 248.1 8.4 249 326-635 32-284 (317)
62 3zyj_A Leucine-rich repeat-con 99.9 2.2E-25 7.6E-30 241.3 26.2 247 20-280 45-292 (440)
63 3zyi_A Leucine-rich repeat-con 99.9 2.4E-25 8.3E-30 241.9 25.8 227 18-254 75-302 (452)
64 2z62_A TOLL-like receptor 4, v 99.9 4.7E-25 1.6E-29 223.0 22.3 212 352-611 28-244 (276)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-26 4.7E-31 239.0 9.3 244 122-442 35-280 (317)
66 1wwl_A Monocyte differentiatio 99.9 6.3E-27 2.1E-31 241.0 6.7 245 328-628 43-310 (312)
67 2p1m_B Transport inhibitor res 99.9 4.2E-28 1.4E-32 274.4 -2.4 228 328-602 289-542 (594)
68 1wwl_A Monocyte differentiatio 99.9 6.1E-27 2.1E-31 241.1 6.4 224 330-606 65-311 (312)
69 2p1m_B Transport inhibitor res 99.9 3.7E-27 1.3E-31 266.6 4.6 157 375-579 371-543 (594)
70 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-24 9.5E-29 239.1 27.5 202 328-609 101-302 (622)
71 3oja_A Leucine-rich immune mol 99.9 1.4E-25 4.8E-30 244.9 16.3 227 318-605 24-251 (487)
72 2o6q_A Variable lymphocyte rec 99.9 2.9E-24 1E-28 216.2 22.2 207 330-610 18-224 (270)
73 3g06_A SSPH2 (leucine-rich rep 99.9 4.5E-24 1.5E-28 237.4 25.8 270 122-475 41-310 (622)
74 2z62_A TOLL-like receptor 4, v 99.9 8.8E-24 3E-28 213.6 20.7 212 328-584 28-241 (276)
75 3oja_A Leucine-rich immune mol 99.9 5.2E-25 1.8E-29 240.4 12.5 238 16-275 32-270 (487)
76 1p9a_G Platelet glycoprotein I 99.9 1.1E-23 3.9E-28 213.6 20.7 206 348-607 6-211 (290)
77 2o6q_A Variable lymphocyte rec 99.9 5.4E-23 1.8E-27 206.9 21.9 201 304-582 20-220 (270)
78 3rfs_A Internalin B, repeat mo 99.9 2.8E-23 9.7E-28 209.1 15.6 205 348-610 37-241 (272)
79 1p9a_G Platelet glycoprotein I 99.9 1.7E-22 5.8E-27 204.9 19.4 202 326-581 8-209 (290)
80 3goz_A Leucine-rich repeat-con 99.9 3.5E-24 1.2E-28 225.4 7.0 259 304-608 2-301 (362)
81 3rfs_A Internalin B, repeat mo 99.9 8E-23 2.7E-27 205.8 15.4 208 327-592 40-247 (272)
82 2ca6_A RAN GTPase-activating p 99.9 1.1E-24 3.8E-29 231.8 0.8 243 320-608 24-320 (386)
83 3m19_A Variable lymphocyte rec 99.9 2.5E-22 8.7E-27 199.6 15.5 211 353-637 15-232 (251)
84 3goz_A Leucine-rich repeat-con 99.9 1.6E-23 5.3E-28 220.5 6.6 259 1-262 5-304 (362)
85 2ca6_A RAN GTPase-activating p 99.9 1.4E-23 4.8E-28 223.2 6.1 264 10-276 24-339 (386)
86 2xwt_C Thyrotropin receptor; s 99.9 3.1E-22 1.1E-26 197.5 14.7 85 329-413 32-118 (239)
87 4glp_A Monocyte differentiatio 99.9 1.6E-22 5.6E-27 207.8 11.6 205 328-605 91-308 (310)
88 2xwt_C Thyrotropin receptor; s 99.9 6.7E-22 2.3E-26 195.1 15.6 198 352-602 31-237 (239)
89 2ast_B S-phase kinase-associat 99.9 2.9E-22 9.8E-27 209.0 12.0 250 19-285 48-311 (336)
90 2ast_B S-phase kinase-associat 99.9 1.4E-22 4.8E-27 211.4 8.9 231 328-610 70-312 (336)
91 1h6u_A Internalin H; cell adhe 99.9 1.7E-21 5.8E-26 199.6 16.4 193 350-605 39-231 (308)
92 1h6u_A Internalin H; cell adhe 99.9 3.9E-21 1.3E-25 197.0 17.4 192 327-581 40-231 (308)
93 4glp_A Monocyte differentiatio 99.9 1.2E-21 4.1E-26 201.4 13.3 225 353-628 65-308 (310)
94 3m19_A Variable lymphocyte rec 99.9 1.1E-20 3.6E-25 187.9 18.5 181 328-582 14-194 (251)
95 4ay9_X Follicle-stimulating ho 99.8 1.6E-20 5.3E-25 196.4 15.3 237 2-252 17-256 (350)
96 4ay9_X Follicle-stimulating ho 99.8 6.7E-20 2.3E-24 191.6 16.5 243 302-603 11-258 (350)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 3.3E-20 1.1E-24 179.8 11.4 158 403-610 14-172 (220)
98 2o6s_A Variable lymphocyte rec 99.8 1.1E-19 3.6E-24 175.1 13.5 82 522-610 103-184 (208)
99 2o6s_A Variable lymphocyte rec 99.8 2.1E-19 7.2E-24 173.0 14.4 128 331-462 10-137 (208)
100 2v9t_B SLIT homolog 2 protein 99.8 3.8E-19 1.3E-23 172.3 14.5 156 403-608 14-169 (220)
101 3cvr_A Invasion plasmid antige 99.8 7.1E-19 2.4E-23 193.1 18.1 115 329-463 60-174 (571)
102 3e6j_A Variable lymphocyte rec 99.8 1.4E-18 4.7E-23 169.6 14.8 158 402-610 21-178 (229)
103 3cvr_A Invasion plasmid antige 99.8 2E-18 6.7E-23 189.6 16.4 118 328-467 80-197 (571)
104 1h6t_A Internalin B; cell adhe 99.8 1.3E-18 4.4E-23 176.5 13.6 186 333-605 29-214 (291)
105 1h6t_A Internalin B; cell adhe 99.8 4.6E-18 1.6E-22 172.4 16.6 173 14-208 42-214 (291)
106 2xot_A Amphoterin-induced prot 99.8 1.1E-18 3.6E-23 183.2 12.1 179 355-607 21-205 (361)
107 1m9s_A Internalin B; cell inva 99.7 3.5E-18 1.2E-22 189.9 12.7 124 328-462 43-166 (605)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 2.5E-17 8.5E-22 159.5 16.5 156 21-185 14-169 (220)
109 1m9s_A Internalin B; cell inva 99.7 1.8E-17 6.3E-22 184.1 17.5 183 3-209 30-212 (605)
110 3e6j_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 159.2 16.7 154 355-583 22-175 (229)
111 2xot_A Amphoterin-induced prot 99.7 1.5E-17 5.1E-22 174.5 14.0 177 21-208 21-203 (361)
112 1w8a_A SLIT protein; signaling 99.7 8.7E-18 3E-22 159.0 10.6 111 521-631 56-167 (192)
113 4ezg_A Putative uncharacterize 99.7 2E-17 6.7E-22 157.5 12.6 153 39-207 41-194 (197)
114 2v9t_B SLIT homolog 2 protein 99.7 5E-17 1.7E-21 157.3 15.6 151 21-181 14-164 (220)
115 4ezg_A Putative uncharacterize 99.7 1.6E-17 5.5E-22 158.0 11.6 152 399-605 43-195 (197)
116 3sb4_A Hypothetical leucine ri 99.7 2E-17 6.7E-22 171.3 10.6 100 328-430 226-326 (329)
117 1xeu_A Internalin C; cellular 99.7 1.8E-17 6.1E-22 165.3 9.6 79 329-413 20-98 (263)
118 1xeu_A Internalin C; cellular 99.7 1.9E-17 6.4E-22 165.1 9.7 80 521-606 108-187 (263)
119 1dce_A Protein (RAB geranylger 99.7 3E-19 1E-23 197.3 -5.8 87 521-610 465-552 (567)
120 4b8c_D Glucose-repressible alc 99.7 1.8E-17 6E-22 189.2 5.1 192 332-580 205-404 (727)
121 3sb4_A Hypothetical leucine ri 99.7 1.6E-16 5.4E-21 164.5 11.4 245 17-273 48-327 (329)
122 1w8a_A SLIT protein; signaling 99.7 2.4E-16 8.2E-21 149.0 11.3 156 403-609 11-167 (192)
123 4fs7_A Uncharacterized protein 99.7 4E-15 1.4E-19 158.0 21.5 335 30-454 59-393 (394)
124 1dce_A Protein (RAB geranylger 99.7 6.5E-19 2.2E-23 194.7 -8.4 205 39-274 346-567 (567)
125 4b8c_D Glucose-repressible alc 99.7 3.2E-17 1.1E-21 187.1 5.1 221 328-607 173-407 (727)
126 2wfh_A SLIT homolog 2 protein 99.6 1.5E-15 5.2E-20 143.4 13.9 88 521-608 56-143 (193)
127 2ell_A Acidic leucine-rich nuc 99.6 1.2E-15 4.2E-20 141.0 11.3 133 425-605 24-161 (168)
128 4fdw_A Leucine rich hypothetic 99.6 2.1E-14 7.2E-19 151.5 21.4 241 18-280 113-358 (401)
129 2o6r_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 139.3 13.1 90 521-610 54-143 (177)
130 4fdw_A Leucine rich hypothetic 99.6 2.3E-14 7.7E-19 151.3 19.5 256 4-279 122-382 (401)
131 2je0_A Acidic leucine-rich nuc 99.6 1.5E-15 5.3E-20 137.2 8.5 129 424-600 16-149 (149)
132 2ell_A Acidic leucine-rich nuc 99.6 8.2E-15 2.8E-19 135.4 12.5 132 42-182 24-160 (168)
133 4fs7_A Uncharacterized protein 99.6 7.1E-14 2.4E-18 148.4 21.3 137 133-277 59-195 (394)
134 2je0_A Acidic leucine-rich nuc 99.6 1.3E-14 4.4E-19 131.1 11.5 127 18-177 17-148 (149)
135 2wfh_A SLIT homolog 2 protein 99.6 1.8E-14 6.1E-19 136.0 12.6 128 403-581 13-140 (193)
136 2o6r_A Variable lymphocyte rec 99.5 3.1E-14 1.1E-18 132.7 12.5 133 402-584 9-141 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.5 4.6E-14 1.6E-18 131.4 8.5 82 522-605 67-154 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 8.1E-14 2.8E-18 129.7 9.5 131 326-462 17-153 (176)
139 3g39_A Variable lymphocyte rec 99.5 1.7E-13 5.8E-18 126.4 11.3 90 521-610 32-121 (170)
140 1ds9_A Outer arm dynein; leuci 99.5 9.5E-16 3.3E-20 145.9 -5.1 129 423-604 46-185 (198)
141 2r9u_A Variable lymphocyte rec 99.4 5.2E-13 1.8E-17 123.5 11.4 90 521-610 35-124 (174)
142 1ds9_A Outer arm dynein; leuci 99.4 3.1E-15 1.1E-19 142.3 -4.8 135 16-162 16-157 (198)
143 4gt6_A Cell surface protein; l 99.4 3.7E-11 1.3E-15 127.4 24.4 157 10-179 55-215 (394)
144 3g39_A Variable lymphocyte rec 99.4 3E-12 1E-16 118.0 11.4 108 427-583 11-118 (170)
145 4gt6_A Cell surface protein; l 99.4 8.1E-11 2.8E-15 124.8 24.2 337 57-461 53-390 (394)
146 2r9u_A Variable lymphocyte rec 99.3 6.4E-12 2.2E-16 116.2 11.4 61 522-582 60-120 (174)
147 3un9_A NLR family member X1; l 99.3 6.9E-14 2.3E-18 146.1 -3.4 39 400-438 101-139 (372)
148 3un9_A NLR family member X1; l 99.3 7.4E-13 2.5E-17 138.3 3.5 164 42-208 72-253 (372)
149 2ifg_A High affinity nerve gro 99.2 3.9E-11 1.3E-15 125.0 10.4 103 429-580 12-116 (347)
150 2ifg_A High affinity nerve gro 99.1 7.8E-11 2.7E-15 122.7 9.5 68 404-474 12-81 (347)
151 4h09_A Hypothetical leucine ri 99.1 7.1E-09 2.4E-13 109.2 23.7 312 122-475 47-358 (379)
152 4h09_A Hypothetical leucine ri 99.1 1E-08 3.4E-13 108.1 24.0 278 140-457 41-318 (379)
153 2ra8_A Uncharacterized protein 98.8 2.7E-09 9.2E-14 110.2 6.2 82 519-602 252-341 (362)
154 2ra8_A Uncharacterized protein 98.8 6E-09 2.1E-13 107.6 6.9 64 143-207 250-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 3.5E-07 1.2E-11 85.0 6.4 60 122-181 94-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 3.3E-07 1.1E-11 85.2 5.7 117 35-158 29-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.3E-07 4.3E-12 92.4 2.5 89 519-609 141-238 (267)
158 3rw6_A Nuclear RNA export fact 98.2 7.1E-07 2.4E-11 87.1 4.9 79 517-597 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.2 8E-07 2.7E-11 80.2 3.8 85 18-103 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 5.6E-06 1.9E-10 74.6 3.8 85 376-460 61-150 (176)
161 3rfe_A Platelet glycoprotein I 97.3 0.00038 1.3E-08 59.8 7.0 60 547-608 12-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00095 3.3E-08 61.3 8.0 42 65-106 39-84 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00018 6E-09 66.2 2.6 65 398-462 96-170 (197)
164 3rfe_A Platelet glycoprotein I 96.6 0.0028 9.5E-08 54.3 6.0 57 522-580 11-68 (130)
165 2lz0_A Uncharacterized protein 73.3 7.9 0.00027 30.7 6.2 45 29-75 7-51 (100)
166 2lz0_A Uncharacterized protein 72.0 4.3 0.00015 32.2 4.4 50 3-53 5-54 (100)
167 2k1k_A Ephrin type-A receptor 70.5 3.9 0.00013 25.7 2.9 19 662-680 12-30 (38)
168 2ks1_B Epidermal growth factor 63.9 2.4 8.3E-05 27.6 1.1 19 670-688 21-39 (44)
169 2jwa_A Receptor tyrosine-prote 62.7 4.5 0.00015 26.2 2.1 27 662-688 13-39 (44)
170 2l2t_A Receptor tyrosine-prote 62.6 2.6 9E-05 27.3 1.1 19 670-688 20-38 (44)
171 2l9u_A Receptor tyrosine-prote 61.0 5.1 0.00017 23.9 2.0 25 664-688 10-34 (40)
172 1iij_A ERBB-2 receptor protein 35.4 15 0.0005 22.5 1.2 7 679-685 26-32 (35)
173 2klu_A T-cell surface glycopro 24.2 31 0.001 24.3 1.4 14 666-679 12-25 (70)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.4e-72 Score=647.84 Aligned_cols=612 Identities=30% Similarity=0.411 Sum_probs=478.1
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCch--hhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchh
Q 041683 10 IPSRLGNLTSLKYLDLSSNELNSTVLG--WLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTS 87 (743)
Q Consensus 10 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~ 87 (743)
+|+.|.++++|++|||++|.+.+..|. .|+++++|++|+|++|.+++.+|...+.++++|++||++ ++.+++..|..
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~ 170 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS-ANSISGANVVG 170 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC-SSCCEEETHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC-CCccCCcCChh
Confidence 347899999999999999999887777 899999999999999999877777444889999999999 66787777776
Q ss_pred ---ccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchh
Q 041683 88 ---FGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFS 164 (743)
Q Consensus 88 ---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 164 (743)
+.++++|++|++++|.+.+..+. ..++ +|++|++++|.+.+.+|. +.++++|++|++++|.+++.+|..
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~-----~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~ 242 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVDV--SRCV-----NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA 242 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCBC--TTCT-----TCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH
T ss_pred hhhhccCCCCCEEECCCCcccccCCc--ccCC-----cCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHH
Confidence 78899999999999988775543 4444 899999999999888877 999999999999999999889999
Q ss_pred ccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCC-ccccEEEcCCCcCCCCcchhhcCCCC
Q 041683 165 LGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPP-FQLTVLELRSCHLGPRFPLWLQSQRE 243 (743)
Q Consensus 165 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~ 243 (743)
|+++++|++|++++|++.+.++.. .+++|++|++++|.+.+.++..+... ++|++|++++|.+.+..|..+..+++
T Consensus 243 l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 243 ISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp TTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred HhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 999999999999999998777762 78899999999999988888877765 88999999999998888999999999
Q ss_pred CCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCC-C-C-CCCc-ccCCCCC--------------CCCeE
Q 041683 244 LNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFD-N-P-SMPL-ITTPSDL--------------LGPIF 305 (743)
Q Consensus 244 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~-~-~~~~-~~~~~~l--------------~~~~l 305 (743)
|++|++++|.+++.+|...+..+++|++|++++|.+.+.+|... . . .+.. .+..+.+ .-..+
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 99999999999888888767778899999999999887776521 1 0 1111 1111111 01256
Q ss_pred EecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccC
Q 041683 306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRN 385 (743)
Q Consensus 306 ~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 385 (743)
++++|.+.+.+|..+. .+++|++|++++|++.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus 400 ~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLS----NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp ECCSSEEEEECCGGGG----GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ECCCCccccccCHHHh----cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 6666666666554443 366777777777777777777777777777777777777777777777777777777777
Q ss_pred ccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccccc
Q 041683 386 NILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTI 465 (743)
Q Consensus 386 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 465 (743)
|.+++..|..+..+++|++|++++|++.+.+|.++. .+++|++|++++|++.+.+|..+..+++|+.|++++|++.|.+
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 777777777777777777777777777777776665 5777777777777777777777777777777777777777777
Q ss_pred CccccccccccccCccchhhhhh-c---------------cccCCCC--------cccccccceeeeceeeehhcccccc
Q 041683 466 PRCINNLSAMAITDSYDQAVILY-S---------------SLRSEGQ--------SEIFEDASLVMKGVLVEYNSILNLV 521 (743)
Q Consensus 466 p~~~~~l~~L~~~~~~~~~~~~~-~---------------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~L 521 (743)
|..+.....+............+ . .+.+... ..........+.|........++.|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 77665544432211100000000 0 0000000 0000111233455556666778899
Q ss_pred cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCC
Q 041683 522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN 601 (743)
Q Consensus 522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 601 (743)
+.||+++|+++|.+|..++++++|+.|+|++|+++|.+|+.|+.+++|++|||++|+++|.+|..+..+++|++||+++|
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcccCCCCCccccCC-CCCCCCCCCCCCCC
Q 041683 602 NLVGKIPSSTQLQSFGASSFAGN-DLCGDPLSNCTEKN 638 (743)
Q Consensus 602 ~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~~~~c~~~~ 638 (743)
+++|.||..+++.++...+|.|| .|||.|+..|....
T Consensus 715 ~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~ 752 (768)
T 3rgz_A 715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752 (768)
T ss_dssp EEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred cccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCc
Confidence 99999999999999999999999 89999988886443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.5e-65 Score=589.10 Aligned_cols=607 Identities=29% Similarity=0.416 Sum_probs=472.7
Q ss_pred CCCCcCCCC---CCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcc-cccCCCCCCEEEcCC
Q 041683 1 LSGNQFQGQ---IPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSL-GLENLTSIKRLYLSE 76 (743)
Q Consensus 1 Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~Ls~ 76 (743)
|+++.+.|. +|++|.++++|+.++++.+.+.. .|..|+.+++|++|+|++|.+++.+|.. .++++++|++|+++
T Consensus 57 L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls- 134 (768)
T 3rgz_A 57 LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS- 134 (768)
T ss_dssp CTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECC-
T ss_pred CCCCCcCCccCccChhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECc-
Confidence 567788887 88899999999999999998743 4578999999999999999999777652 58999999999999
Q ss_pred CCcCCcccchhc-cCCCCCCEEEccCCcCcccchhh---hhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEEC
Q 041683 77 NDELGGKIPTSF-GKLCKLTSFSMRFTKLSQDISEI---LGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDL 152 (743)
Q Consensus 77 ~~~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 152 (743)
++.+.+..|..+ .++++|++|++++|.+++..+.. +..++ +|++|++++|.+.+..+ +..+++|++|++
T Consensus 135 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 207 (768)
T 3rgz_A 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG-----ELKHLAISGNKISGDVD--VSRCVNLEFLDV 207 (768)
T ss_dssp SSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT-----TCCEEECCSSEEESCCB--CTTCTTCCEEEC
T ss_pred CCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC-----CCCEEECCCCcccccCC--cccCCcCCEEEC
Confidence 677877777766 89999999999999999887776 56666 99999999999987766 489999999999
Q ss_pred cCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCC
Q 041683 153 SNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGP 232 (743)
Q Consensus 153 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 232 (743)
++|.+++.+|. ++++++|++|++++|++++.++. .+..+++|++|++++|.+.+..+.. .+++|++|++++|.+.+
T Consensus 208 s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~ 283 (768)
T 3rgz_A 208 SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283 (768)
T ss_dssp CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEE
T ss_pred cCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCC
Confidence 99999987776 99999999999999999977776 7999999999999999998776654 78899999999999998
Q ss_pred CcchhhcCC-CCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCC--CCC-CCCCc-ccCCCCCC------
Q 041683 233 RFPLWLQSQ-RELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPK--FDN-PSMPL-ITTPSDLL------ 301 (743)
Q Consensus 233 ~~~~~l~~l-~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~-~~~~~-~~~~~~l~------ 301 (743)
.+|..+... ++|++|++++|.+++.+|..+ ..+++|++|++++|.+.+.+|. +.. ..++. .+..+.+.
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 888888775 999999999999988787765 5589999999999999877774 221 12221 22222111
Q ss_pred -------CCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccC
Q 041683 302 -------GPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGT 374 (743)
Q Consensus 302 -------~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 374 (743)
-..+++++|.+++.++..++. ..+++|++|++++|++.+.+|..+..+++|++|++++|++++..|..+..
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 440 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTC--STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhh--cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc
Confidence 115566666665555443321 11456777777777777777777777777777777777777777777777
Q ss_pred CCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEE
Q 041683 375 LSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQIL 454 (743)
Q Consensus 375 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 454 (743)
+++|++|++++|.+.+..|..+..+++|++|++++|++.+.+|..+. .+++|++|++++|++.+.+|..+..+++|++|
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 77777777777777777777777777777777777777777776654 57777777777777777777777777777777
Q ss_pred EccCCccccccCccccccccccccCccchhhhhhccccCCCCccccccccee----------------------------
Q 041683 455 DVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLV---------------------------- 506 (743)
Q Consensus 455 ~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 506 (743)
++++|++.+.+|..+.+++.|+..+...+ .+.+..+..........
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N------~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTN------LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSS------EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCC------ccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 77777777777777777776644222111 11111111222211000
Q ss_pred --eeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCC
Q 041683 507 --MKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIP 584 (743)
Q Consensus 507 --~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 584 (743)
+.+........++.+..++++.|.+.|.+|..+..+++|+.|||++|+++|.+|..++.+++|+.|+|++|+++|.+|
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 000011111223444556666777777777788888999999999999999999999999999999999999999999
Q ss_pred ccccCcCCCCeeeCcCCcccccCCCC-cccCCCCCccccCCCCCCCC
Q 041683 585 QSMSNLSFLNHLNLSNNNLVGKIPSS-TQLQSFGASSFAGNDLCGDP 630 (743)
Q Consensus 585 ~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~l~~~~ 630 (743)
..++.+++|+.|||++|+++|.+|.. ..++.+..+++++|.+.|..
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 99999999999999999999999976 56788899999999888754
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.1e-57 Score=520.10 Aligned_cols=555 Identities=19% Similarity=0.181 Sum_probs=379.3
Q ss_pred CCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCC
Q 041683 2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELG 81 (743)
Q Consensus 2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~ 81 (743)
++++++ .+|..+. +++++|+|++|.+.++.+..|.++++|++|+|++|.+++..|. .|+++++|++|+++ ++.++
T Consensus 12 s~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~-~n~l~ 86 (680)
T 1ziw_A 12 SHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQ-HNELS 86 (680)
T ss_dssp CSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECC-SSCCC
T ss_pred CCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHH-HHhcccCcCEEECC-CCccC
Confidence 345555 3454443 5666777777766666666666667777777776666644343 66666677777776 44555
Q ss_pred cccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCcccc
Q 041683 82 GKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSI 161 (743)
Q Consensus 82 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 161 (743)
+..+.+|+++++|++|++++|.+.+..+..++.++ +|++|++++|.+.+..+..+.++++|++|++++|.+++..
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK-----NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT-----TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccC-----CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence 44444566666777777766666655555555555 6667777766666666666666666777777666666555
Q ss_pred chhcc--CCCCCCEEEccCCCCccccChhhhcC---------------------------CCCCCEEECCCCcceeecCC
Q 041683 162 PFSLG--QISNLEYLDLSNNKLNGTVSEIHFVN---------------------------LTKLAFFRANGNSLIFKINP 212 (743)
Q Consensus 162 ~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~---------------------------l~~L~~L~l~~n~~~~~~~~ 212 (743)
+..+. .+++|++|++++|++++..+. .+.. .++|+.|++++|.+.+..+.
T Consensus 162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 162 SEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp HHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred HHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 55443 346666667666666543332 2332 36788889999998888888
Q ss_pred CCCCCcc--ccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCC-----C
Q 041683 213 NWVPPFQ--LTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIP-----K 285 (743)
Q Consensus 213 ~~~~~~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~ 285 (743)
.+..+.. |+.|++++|.+.+..+.++..+++|++|++++|.+.+..|..+ ..+++|+.|++++|...+.++ .
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------CCE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhh-cCCCCccEEeccchhhhcccccccccc
Confidence 8877754 9999999999988888889999999999999999987555544 568899999999876554322 1
Q ss_pred CCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCc--ccCCccccCC--CCCCEEECCC
Q 041683 286 FDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFS--GDIPDCWMNW--LRLRALNLGH 361 (743)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~~~~l--~~L~~L~Ls~ 361 (743)
+.... ......+. .+++++|.+.+..+.. +..+++|++|++++|.+. ......|..+ ++|+.|++++
T Consensus 320 i~~~~---~~~l~~L~--~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~ 390 (680)
T 1ziw_A 320 IDDFS---FQWLKCLE--HLNMEDNDIPGIKSNM----FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390 (680)
T ss_dssp ECTTT---TTTCTTCC--EEECCSCCBCCCCTTT----TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTT
T ss_pred cChhh---cccCCCCC--EEECCCCccCCCChhH----hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCC
Confidence 11100 01111222 7888999888765543 445788999999998754 2233344433 5799999999
Q ss_pred CcCcccCCccccCCCCCcEEEccCccccccCC-cccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCc--
Q 041683 362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIP-TSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFH-- 438 (743)
Q Consensus 362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~-- 438 (743)
|++++..|.+|..+++|++|++++|.+.+.++ ..|.++++|++|++++|++.+..+. .+..+++|+.|++++|.+.
T Consensus 391 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN-SFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT-TTTTCTTCCEEECTTSCCBCT
T ss_pred CCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh-hhhcCcccccchhcccccccc
Confidence 99988888888889999999999999876554 6788899999999999988744443 3447889999999998886
Q ss_pred ccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhccc
Q 041683 439 GDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSIL 518 (743)
Q Consensus 439 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (743)
+..|..|..+++|+.|++++|++++..+..|..++.|
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L------------------------------------------- 506 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL------------------------------------------- 506 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------------------------------------
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-------------------------------------------
Confidence 4677888889999999999999987777777776665
Q ss_pred ccccEEEccCCcCcccCc--------hhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCc
Q 041683 519 NLVRSIDVSKNIFSGEIP--------VEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNL 590 (743)
Q Consensus 519 ~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 590 (743)
++|++++|++++..+ ..|.++++|++|+|++|+++...+..|..+++|+.|++++|++++..+..|..+
T Consensus 507 ---~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 583 (680)
T 1ziw_A 507 ---EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583 (680)
T ss_dssp ---CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ---CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence 666777776664321 125666667777777777664333456666777777777777765555556666
Q ss_pred CCCCeeeCcCCcccccCCCCc--ccCCCCCccccCC
Q 041683 591 SFLNHLNLSNNNLVGKIPSST--QLQSFGASSFAGN 624 (743)
Q Consensus 591 ~~L~~L~ls~N~l~~~~p~~~--~~~~l~~~~~~~n 624 (743)
++|+.|++++|++++..|... .++.+..+++.||
T Consensus 584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred CCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence 677777777776666555432 3455666666666
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.8e-56 Score=513.21 Aligned_cols=552 Identities=21% Similarity=0.192 Sum_probs=464.0
Q ss_pred CCCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcC
Q 041683 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDEL 80 (743)
Q Consensus 1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l 80 (743)
|++|.|+++.+.+|.++++|++|+|++|.+.+..|.+|.++++|++|+|++|.++ .+|..+|+++++|++|+++ ++.+
T Consensus 32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~-~n~l 109 (680)
T 1ziw_A 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLM-SNSI 109 (680)
T ss_dssp CCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECC-SSCC
T ss_pred CCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECC-CCcc
Confidence 6889999888889999999999999999999999999999999999999999998 6776579999999999999 6678
Q ss_pred CcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhcc--CCCCCCEEECcCccCc
Q 041683 81 GGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLR--RFKRLNSLDLSNTILD 158 (743)
Q Consensus 81 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~--~l~~L~~L~Ls~n~l~ 158 (743)
.+..|.+|+++++|++|++++|.+++..+..+..++ +|++|++++|.+.+..+..+. .+++|++|++++|.++
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE-----NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT-----TCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CccChhHccccCCCCEEECCCCcccccCchhhcccc-----cCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 877788999999999999999999988777777777 999999999999888887665 5689999999999999
Q ss_pred cccchhccCC---------------------------CCCCEEEccCCCCccccChhhhcCCCC--CCEEECCCCcceee
Q 041683 159 GSIPFSLGQI---------------------------SNLEYLDLSNNKLNGTVSEIHFVNLTK--LAFFRANGNSLIFK 209 (743)
Q Consensus 159 ~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~~~~~~~~~l~~--L~~L~l~~n~~~~~ 209 (743)
+..|..|..+ ++|++|++++|.+.+..+. .+..++. |++|++++|.+.+.
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTGGGGGSCCCEEECTTSCCCEE
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-HhhccCcCCCCEEECCCCCcCcc
Confidence 8888776644 5678888888888855554 6777755 99999999999999
Q ss_pred cCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccc--------cChhhhhhcccCceEecccCcccc
Q 041683 210 INPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAK--------IPRGFWNSIYQYFYLNISGNQIYG 281 (743)
Q Consensus 210 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~--------~~~~~~~~l~~L~~L~l~~n~l~~ 281 (743)
.+..|..+++|++|++++|.+.+..|.++..+++|+.|++++|...+. ++...+..+++|++|++++|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 888999999999999999999988899999999999999998765431 223345678999999999999987
Q ss_pred CCCC-CCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECC
Q 041683 282 GIPK-FDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLG 360 (743)
Q Consensus 282 ~~~~-~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 360 (743)
..+. +... ..+. .+++++|.+...............++|+.|++++|++.+..+..|..+++|++|+++
T Consensus 344 ~~~~~~~~l--------~~L~--~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 413 (680)
T 1ziw_A 344 IKSNMFTGL--------INLK--YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413 (680)
T ss_dssp CCTTTTTTC--------TTCC--EEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CChhHhccc--------cCCc--EEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence 6554 2111 1122 788888876543221110000113589999999999999999999999999999999
Q ss_pred CCcCcccCC-ccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCc--ccCchhHHhcccCCcEEEccCCcC
Q 041683 361 HNNFTGSLP-MSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV--GSIPSWIGERFSILKILNLRSNKF 437 (743)
Q Consensus 361 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~~l~~L~~L~L~~n~l 437 (743)
+|.+.+.+| ..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+. +.+|..+. .+++|++|++++|++
T Consensus 414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNI 492 (680)
T ss_dssp SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCC
T ss_pred CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCC
Confidence 999987555 68999999999999999999999999999999999999999986 45666664 799999999999999
Q ss_pred cccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcc
Q 041683 438 HGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSI 517 (743)
Q Consensus 438 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (743)
++..+..|.++++|++|++++|++.+..+..+...+ ......
T Consensus 493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~--------------------------------------~~~~~~ 534 (680)
T 1ziw_A 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP--------------------------------------IYFLKG 534 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC--------------------------------------CCTTTT
T ss_pred CcCChhhhccccccCEEeCCCCCccccchhhccCCc--------------------------------------chhhcC
Confidence 988888899999999999999999864332211100 001123
Q ss_pred cccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCcccc-CcCCCCee
Q 041683 518 LNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMS-NLSFLNHL 596 (743)
Q Consensus 518 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L 596 (743)
++.|+.|++++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++..|..+. .+++|+.+
T Consensus 535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l 614 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred CCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence 45579999999999966566799999999999999999977777889999999999999999988888777 78999999
Q ss_pred eCcCCcccccCCC
Q 041683 597 NLSNNNLVGKIPS 609 (743)
Q Consensus 597 ~ls~N~l~~~~p~ 609 (743)
++++|++.|.++.
T Consensus 615 ~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 615 DMRFNPFDCTCES 627 (680)
T ss_dssp ECTTCCCCBCCCC
T ss_pred EccCCCcccCCcc
Confidence 9999999999885
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.9e-56 Score=502.18 Aligned_cols=510 Identities=22% Similarity=0.217 Sum_probs=413.8
Q ss_pred CCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCc
Q 041683 3 GNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGG 82 (743)
Q Consensus 3 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~ 82 (743)
+.+++ .+|..+.. ++++|+|++|.++++.|..|.++++|++|+|++|.+++..|. +|+++++|++|+++ +|.+.+
T Consensus 21 ~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls-~n~l~~ 95 (606)
T 3t6q_A 21 NLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLT-ANPLIF 95 (606)
T ss_dssp TSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECT-TCCCSE
T ss_pred CCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChh-hccCccccCeeeCC-CCcccc
Confidence 44555 46666654 789999999999999899999999999999999999855555 89999999999999 777888
Q ss_pred ccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccc
Q 041683 83 KIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIP 162 (743)
Q Consensus 83 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 162 (743)
..|.+|+++++|++|++++|.++...+..+..++ +|++|++++|.+.+.....+..+++|++|++++|.+++..|
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQK-----TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT-----TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCC-----cccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 8899999999999999999999886667777777 99999999999987554456669999999999999998888
Q ss_pred hhccCCCCCC--EEEccCCCCccccChhhhcCCCCCCEEECCCCcceee--------------------------cCCCC
Q 041683 163 FSLGQISNLE--YLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFK--------------------------INPNW 214 (743)
Q Consensus 163 ~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------------~~~~~ 214 (743)
..|+.+++|+ +|++++|.+++..+. .+ ...+|++|++++|..... .+..+
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPG-AF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTT-TT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChh-Hh-hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence 8999999999 899999999865554 44 346899999988751100 00011
Q ss_pred CCC--ccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCC
Q 041683 215 VPP--FQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMP 292 (743)
Q Consensus 215 ~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 292 (743)
..+ .+++.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+..|
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~-------- 318 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQ-------- 318 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGG--------
T ss_pred chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCch--------
Confidence 111 15677777777777666666777777777777777775 455543 345667777777766653222
Q ss_pred cccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCC-ccccCCCCCCEEECCCCcCcccC--C
Q 041683 293 LITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIP-DCWMNWLRLRALNLGHNNFTGSL--P 369 (743)
Q Consensus 293 ~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~ 369 (743)
..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+.. +
T Consensus 319 -----------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 319 -----------------------------ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp -----------------------------GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred -----------------------------hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence 223347889999999999885554 45889999999999999998665 7
Q ss_pred ccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCC
Q 041683 370 MSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLA 449 (743)
Q Consensus 370 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 449 (743)
..+..+++|++|++++|.+.+..+..|..+++|++|++++|++.+..+...+..+++|++|++++|.+.+..|..+..++
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 449 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC
Confidence 78889999999999999999888899999999999999999998666655455789999999999999988888899999
Q ss_pred CccEEEccCCcccccc---CccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEc
Q 041683 450 FLQILDVASNSLSGTI---PRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDV 526 (743)
Q Consensus 450 ~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 526 (743)
+|++|++++|++.+.. +..+..++ .|++|++
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~----------------------------------------------~L~~L~L 483 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLG----------------------------------------------RLEILVL 483 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCT----------------------------------------------TCCEEEC
T ss_pred CCCEEECCCCCCCccccccchhhccCC----------------------------------------------CccEEEC
Confidence 9999999999987632 23344444 4699999
Q ss_pred cCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCccccc
Q 041683 527 SKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGK 606 (743)
Q Consensus 527 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 606 (743)
++|++++..|..|.++++|++|+|++|++++..|+.+..+++| .|++++|++++..|..+..+++|+.|++++|+++|.
T Consensus 484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred CCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 9999999889999999999999999999999999999999999 999999999988888899999999999999999998
Q ss_pred CCCC
Q 041683 607 IPSS 610 (743)
Q Consensus 607 ~p~~ 610 (743)
++..
T Consensus 563 c~~~ 566 (606)
T 3t6q_A 563 CSNI 566 (606)
T ss_dssp GGGH
T ss_pred CCcH
Confidence 7754
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-55 Score=515.54 Aligned_cols=546 Identities=21% Similarity=0.219 Sum_probs=376.4
Q ss_pred CCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCC
Q 041683 2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELG 81 (743)
Q Consensus 2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~ 81 (743)
++++++. +|. -.++|++|||++|.|+++.+..|.++++|++|+|++|...+.++..+|+++++|++|+|+ +|.+.
T Consensus 12 s~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls-~N~l~ 86 (844)
T 3j0a_A 12 RFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG-SSKIY 86 (844)
T ss_dssp SCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT-TCCCC
T ss_pred cCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC-CCcCc
Confidence 5677774 554 457899999999999999899999999999999999977667755589999999999999 77888
Q ss_pred cccchhccCCCCCCEEEccCCcCcccchhh--hhcccccccCCccEEEccCCcCcccch-hhccCCCCCCEEECcCccCc
Q 041683 82 GKIPTSFGKLCKLTSFSMRFTKLSQDISEI--LGIFSACVANELESLRLGSSQIFGHLT-NQLRRFKRLNSLDLSNTILD 158 (743)
Q Consensus 82 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~ 158 (743)
+..|.+|.++++|++|++++|.+++..+.. +..++ +|++|++++|.+.+..+ ..|+++++|++|++++|.++
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~-----~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK-----ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS-----SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccC-----CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 888999999999999999999998766554 67777 99999999999987655 57999999999999999999
Q ss_pred cccchhccCC--CCCCEEEccCCCCccccChhhhcCCCC------CCEEECCCCcceeecCCCCCC---CccccEEEcCC
Q 041683 159 GSIPFSLGQI--SNLEYLDLSNNKLNGTVSEIHFVNLTK------LAFFRANGNSLIFKINPNWVP---PFQLTVLELRS 227 (743)
Q Consensus 159 ~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~------L~~L~l~~n~~~~~~~~~~~~---~~~L~~L~l~~ 227 (743)
+..+..+..+ ++|++|++++|.+.+..+. .+..+++ |++|++++|.+....+..+.. ..+++.+.++.
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred eeCHHHcccccCCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 8888888877 8999999999999876655 4555544 999999999877665554433 24566776653
Q ss_pred Cc---------CCCCcchhhcCC--CCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCC-CCCCCCCccc
Q 041683 228 CH---------LGPRFPLWLQSQ--RELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPK-FDNPSMPLIT 295 (743)
Q Consensus 228 n~---------l~~~~~~~l~~l--~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~ 295 (743)
+. +.......+..+ ++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|. +...
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l------ 313 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-RVFETLKDLKVLNLAYNKINKIADEAFYGL------ 313 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS-CCSSSCCCCCEEEEESCCCCEECTTTTTTC------
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh-hhhhcCCCCCEEECCCCcCCCCChHHhcCC------
Confidence 32 222233334443 578888888887765433 3345577788888888777654432 1100
Q ss_pred CCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCC
Q 041683 296 TPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTL 375 (743)
Q Consensus 296 ~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 375 (743)
..+. .+++++|.+.+..+. .+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++. ..+
T Consensus 314 --~~L~--~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~ 380 (844)
T 3j0a_A 314 --DNLQ--VLNLSYNLLGELYSS----NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFI 380 (844)
T ss_dssp --SSCC--EEEEESCCCSCCCSC----SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSC
T ss_pred --CCCC--EEECCCCCCCccCHH----HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCC
Confidence 0011 445555544433322 233456666666666666665556666666666666666666532 225
Q ss_pred CCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCc-cccCCCCccEE
Q 041683 376 SSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI-QLCGLAFLQIL 454 (743)
Q Consensus 376 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L 454 (743)
++|+.|++++|.++.. |.. ..+++.|++++|.+.+.-.......+++|++|++++|++.+..+. .+..+++|+.|
T Consensus 381 ~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L 456 (844)
T 3j0a_A 381 PSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456 (844)
T ss_dssp CSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBC
T ss_pred CCcchhccCCCCcccc-ccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccc
Confidence 6666666666666632 221 345666677777665322222223566677777777766643322 34456667777
Q ss_pred EccCCcccccc-----CccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCC
Q 041683 455 DVASNSLSGTI-----PRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKN 529 (743)
Q Consensus 455 ~Ls~N~l~~~~-----p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 529 (743)
++++|.+.+.. +..|.. ++.|+.|+|++|
T Consensus 457 ~Ls~N~l~~~~~~~~~~~~~~~----------------------------------------------l~~L~~L~Ls~N 490 (844)
T 3j0a_A 457 FLGENMLQLAWETELCWDVFEG----------------------------------------------LSHLQVLYLNHN 490 (844)
T ss_dssp EEESCCCSSSCCSCCCSSCSSC----------------------------------------------BCCEECCCCCHH
T ss_pred cCCCCccccccccccchhhhcC----------------------------------------------cccccEEECCCC
Confidence 77777665222 222222 344688888888
Q ss_pred cCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683 530 IFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS 609 (743)
Q Consensus 530 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 609 (743)
++++..|..|.++++|++|+|++|++++..|..+. ++|+.|++++|++++..|..+ .+|+.+++++|++.|.++-
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred cccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence 88888888888888888888888888876666665 788888888888888888765 4788888888888888774
Q ss_pred CcccCCCCCccccCC-CCCCCCCC-CCCCC
Q 041683 610 STQLQSFGASSFAGN-DLCGDPLS-NCTEK 637 (743)
Q Consensus 610 ~~~~~~l~~~~~~~n-~l~~~~~~-~c~~~ 637 (743)
......+ ..++ .++|.+.. .|..+
T Consensus 566 ~~f~~~~----~~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 566 STFINWL----NHTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp CSHHHHH----HHTTTTTCCCGGGCCCSSC
T ss_pred HHHHHHH----HhcCcccccccccCccCCc
Confidence 3221111 1233 55665544 57543
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-54 Score=490.51 Aligned_cols=527 Identities=20% Similarity=0.180 Sum_probs=390.0
Q ss_pred CCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCC
Q 041683 2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELG 81 (743)
Q Consensus 2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~ 81 (743)
++++++ .+|..+. ++|++|+|++|.++++.+..|.++++|++|+|++|.+++..|. +|.++++|++|+++ ++.++
T Consensus 19 ~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~Ls-~n~l~ 93 (606)
T 3vq2_A 19 MDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLILT-GNPIQ 93 (606)
T ss_dssp TTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECT-TCCCC
T ss_pred cCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHH-HhhchhhcCEeECC-CCccc
Confidence 456666 4555554 6788888888888888777888888888888888888744444 78888888888888 66677
Q ss_pred cccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcc-cchhhccCCCCCCEEECcCccCccc
Q 041683 82 GKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFG-HLTNQLRRFKRLNSLDLSNTILDGS 160 (743)
Q Consensus 82 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~ 160 (743)
+..|.+|+++++|++|++++|.+....+..++.+. +|++|++++|.+.+ .+|..+.++++|++|++++|.+++.
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI-----TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT-----TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCC-----CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 77788888888888888888888776656677666 88888888888865 5577888888888888888888877
Q ss_pred cchhccCCCCCC----EEEccCCCCccccChhhhcCCCCCCEEECCCCcce-eecCCCCCCCccccEEEcCCCcCCC---
Q 041683 161 IPFSLGQISNLE----YLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLI-FKINPNWVPPFQLTVLELRSCHLGP--- 232 (743)
Q Consensus 161 ~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~--- 232 (743)
.|..|+.+++|+ +|++++|.++ .++...+... +|++|++++|.+. ...+..+..+..++.+++..+.+..
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 777676655544 7888888887 4554345444 7888888888765 2233344555556665554332211
Q ss_pred ---CcchhhcCCC--CCCEEEc-cCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEE
Q 041683 233 ---RFPLWLQSQR--ELNDLDI-SSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFD 306 (743)
Q Consensus 233 ---~~~~~l~~l~--~L~~L~l-~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ 306 (743)
..+..+..+. .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. +|.+... ..+. .++
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~~l~~~--------~~L~--~L~ 313 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LEDVPKH--------FKWQ--SLS 313 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CCCCCTT--------CCCS--EEE
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchh-hhhcccc--------ccCC--EEE
Confidence 1111222211 2444555 55566655554 4556777777777777642 3322111 1111 566
Q ss_pred ecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCccc--CCccccCCCCCcEEEcc
Q 041683 307 LSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGS--LPMSIGTLSSLLSLNLR 384 (743)
Q Consensus 307 ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~ 384 (743)
+++|.+ +.+|. + .+++|++|++++|...+.. .+..+++|++|++++|.+++. .+..+..+++|++|+++
T Consensus 314 l~~n~l-~~lp~-----~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~ 384 (606)
T 3vq2_A 314 IIRCQL-KQFPT-----L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384 (606)
T ss_dssp EESCCC-SSCCC-----C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC
T ss_pred cccccC-ccccc-----C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC
Confidence 777766 44442 1 4788999999999655433 567888999999999998865 37778889999999999
Q ss_pred CccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccc-
Q 041683 385 NNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG- 463 (743)
Q Consensus 385 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~- 463 (743)
+|.+++ .|..+..+++|++|++++|++.+..|...+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+
T Consensus 385 ~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 385 FNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp SCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence 999885 447888899999999999998866563444478899999999999988888889999999999999999887
Q ss_pred ccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccC
Q 041683 464 TIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQ 543 (743)
Q Consensus 464 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 543 (743)
.+|..+..++. |++|++++|++++..|..|.+++
T Consensus 464 ~~~~~~~~l~~----------------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 464 TLSNVFANTTN----------------------------------------------LTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp EECSCCTTCTT----------------------------------------------CCEEECTTSCCCEECTTTTTTCT
T ss_pred chHHhhccCCC----------------------------------------------CCEEECCCCcCCccChhhhcccc
Confidence 36777766665 48899999999988888899999
Q ss_pred CCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcC-CCCeeeCcCCcccccCCCC
Q 041683 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLS-FLNHLNLSNNNLVGKIPSS 610 (743)
Q Consensus 544 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~ 610 (743)
+|++|+|++|++++.+|..|..+++|++|++++|+++ .+|..+..++ +|++|++++|++.|.++..
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999999999999888899999999999999999998 5666688886 5999999999999888764
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6e-53 Score=478.96 Aligned_cols=490 Identities=19% Similarity=0.177 Sum_probs=424.1
Q ss_pred CCCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcC
Q 041683 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDEL 80 (743)
Q Consensus 1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l 80 (743)
|++|.|+++.|.+|.++++|++|+|++|++.++.|.+|.++++|++|+|++|.+++..|. .|+++++|++|+++ ++.+
T Consensus 40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~-~n~i 117 (606)
T 3t6q_A 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFI-QTGI 117 (606)
T ss_dssp CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEECT-TSCC
T ss_pred ccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEeecc-ccCc
Confidence 689999999999999999999999999999999999999999999999999999965566 89999999999999 7788
Q ss_pred CcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCC--EEECcCccCc
Q 041683 81 GGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLN--SLDLSNTILD 158 (743)
Q Consensus 81 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~--~L~Ls~n~l~ 158 (743)
++..+..+.++++|++|++++|.+.+.....+..++ +|++|++++|.+.+..+..+..+++|+ +|++++|.++
T Consensus 118 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE-----KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp SCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT-----TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred ccCCcchhccCCcccEEECCCCcccccCcccccCCc-----ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 877788899999999999999999874323333355 999999999999999899999999999 9999999999
Q ss_pred cccchhccCCCCCCEEEccCCCCc-------------------------cccChhhhcCCC--CCCEEECCCCcceeecC
Q 041683 159 GSIPFSLGQISNLEYLDLSNNKLN-------------------------GTVSEIHFVNLT--KLAFFRANGNSLIFKIN 211 (743)
Q Consensus 159 ~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~ 211 (743)
+..|..|.. .+|++|++++|... ..++...+..+. +|+.|++++|.+....+
T Consensus 193 ~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 193 GIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp EECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred ccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 877776654 68999999887511 012222333333 78999999999998888
Q ss_pred CCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCC
Q 041683 212 PNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSM 291 (743)
Q Consensus 212 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 291 (743)
..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+.+|.
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~------ 343 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGT------ 343 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCS------
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcccccch------
Confidence 88999999999999999998 67888999999999999999998654544 45689999999999988755442
Q ss_pred CcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccC--CccccCCCCCCEEECCCCcCcccCC
Q 041683 292 PLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDI--PDCWMNWLRLRALNLGHNNFTGSLP 369 (743)
Q Consensus 292 ~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~ 369 (743)
..+..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+..|
T Consensus 344 ------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 393 (606)
T 3t6q_A 344 ------------------------------GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393 (606)
T ss_dssp ------------------------------STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred ------------------------------hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence 12344789999999999999765 7789999999999999999998889
Q ss_pred ccccCCCCCcEEEccCccccccCCc-ccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCccc---CCccc
Q 041683 370 MSIGTLSSLLSLNLRNNILSGIIPT-SFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGD---FPIQL 445 (743)
Q Consensus 370 ~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~ 445 (743)
..|..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+. .+++|++|++++|++.+. .+..+
T Consensus 394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhh
Confidence 9999999999999999999877654 489999999999999999866665554 799999999999999863 33568
Q ss_pred cCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEE
Q 041683 446 CGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSID 525 (743)
Q Consensus 446 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 525 (743)
..+++|+.|++++|++.+..|..|..++.| ++|+
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~ 506 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMM----------------------------------------------NHVD 506 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------------------------------CEEE
T ss_pred ccCCCccEEECCCCccCccChhhhccccCC----------------------------------------------CEEE
Confidence 999999999999999998888888777664 9999
Q ss_pred ccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCC
Q 041683 526 VSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIP 584 (743)
Q Consensus 526 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 584 (743)
+++|++++..|..+.+++.| .|++++|++++.+|+.+..+++|+.|++++|++++..+
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999 99999999998888889999999999999999986544
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.8e-52 Score=472.36 Aligned_cols=525 Identities=16% Similarity=0.138 Sum_probs=415.7
Q ss_pred CCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEc
Q 041683 20 LKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSM 99 (743)
Q Consensus 20 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L 99 (743)
-++++.++++++.+.. .+. ++|++|+|++|.+++ ++...|.++++|++|+++ ++.+++..|.+|.++++|++|++
T Consensus 13 ~~~~~c~~~~l~~ip~-~~~--~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls-~n~l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPD-DIP--SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLS-RCEIETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTEEECTTSCCSSCCT-TSC--TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCceEccCCCcccCCC-CCC--CCcCEEECCCCCcCE-eChhhccCCccCcEEeCC-CCcccccCHHHhhchhhcCEeEC
Confidence 4689999999966544 343 789999999999995 444489999999999999 67888888999999999999999
Q ss_pred cCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCcc-ccchhccCCCCCCEEEccC
Q 041683 100 RFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDG-SIPFSLGQISNLEYLDLSN 178 (743)
Q Consensus 100 ~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~ 178 (743)
++|.+++..|..++.+. +|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..|+++++|++|++++
T Consensus 88 s~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLT-----SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp TTCCCCCCCTTSSTTCT-----TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred CCCcccccChhhcCCcc-----cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence 99999998898898888 99999999999988888889999999999999999986 4689999999999999999
Q ss_pred CCCccccChhhhcCCCCCC----EEECCCCcceeecCCCCCCCccccEEEcCCCcCC-CCcchhhcCCCCCCEEEccCCC
Q 041683 179 NKLNGTVSEIHFVNLTKLA----FFRANGNSLIFKINPNWVPPFQLTVLELRSCHLG-PRFPLWLQSQRELNDLDISSTR 253 (743)
Q Consensus 179 n~l~~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~ 253 (743)
|++++..+. .+..+.+|+ +|++++|.+....+..+... +|+.|++++|.+. ...|.++..++.++.+++..+.
T Consensus 163 n~l~~~~~~-~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 240 (606)
T 3vq2_A 163 NYIQTITVN-DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240 (606)
T ss_dssp SCCCEECTT-TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CcceecChh-hhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccc
Confidence 999854444 566666554 89999999987776666555 8999999999886 4678889999999998886554
Q ss_pred Ccc-----ccChhhhhhcc--cCceEec-ccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCC
Q 041683 254 ISA-----KIPRGFWNSIY--QYFYLNI-SGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGEN 325 (743)
Q Consensus 254 i~~-----~~~~~~~~~l~--~L~~L~l-~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~ 325 (743)
+.. .++...+..+. .++.+++ ..+.+.+.+|.+... ..+. .++++++.+... + .+.
T Consensus 241 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l--------~~L~--~L~l~~~~~~~l-~-----~l~ 304 (606)
T 3vq2_A 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL--------ANVS--AMSLAGVSIKYL-E-----DVP 304 (606)
T ss_dssp CTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGG--------TTCS--EEEEESCCCCCC-C-----CCC
T ss_pred cccCCcccccChHHhhhhhhccHhheeccccccccccccccccC--------CCCC--EEEecCccchhh-h-----hcc
Confidence 432 12222222222 3455666 556666655542111 1111 677777776432 2 345
Q ss_pred CCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCcccccc--CCcccCCCCCCC
Q 041683 326 FSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGI--IPTSFKNFSSLE 403 (743)
Q Consensus 326 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~ 403 (743)
.+++|++|++++|.+ +.+| .+ .+++|++|++++|+..+.. .+..+++|++|++++|.+++. .+..+..+++|+
T Consensus 305 ~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 305 KHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp TTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCC
T ss_pred ccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCccc
Confidence 577888888888888 4566 34 7888888888888655433 566788888888888888765 367778888888
Q ss_pred EEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCC-ccccCCCCccEEEccCCccccccCccccccccccccCccc
Q 041683 404 VLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD 482 (743)
Q Consensus 404 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 482 (743)
+|++++|.+. .+|..+. .+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..|..+..++.
T Consensus 380 ~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-------- 449 (606)
T 3vq2_A 380 HLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS-------- 449 (606)
T ss_dssp EEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT--------
T ss_pred EeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC--------
Confidence 8888888876 4554443 67888888888888887666 57788888888888888888777777666555
Q ss_pred hhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcc-cCchhhcccCCCCEEeCCCCcCcccCCC
Q 041683 483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG-EIPVEVTNLQGLQSLNLSHNLLTGRIPD 561 (743)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 561 (743)
|++|++++|++++ .+|..+..+++|++|+|++|++++..|.
T Consensus 450 --------------------------------------L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 491 (606)
T 3vq2_A 450 --------------------------------------LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491 (606)
T ss_dssp --------------------------------------CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred --------------------------------------CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence 5999999999998 4788899999999999999999999999
Q ss_pred CCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC-cccC-CCCCccccCCCC
Q 041683 562 NIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS-TQLQ-SFGASSFAGNDL 626 (743)
Q Consensus 562 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~-~l~~~~~~~n~l 626 (743)
.|..+++|++|++++|++++..|..+..+++|++||+++|+++. +|.. ..+. .++.+++.+|++
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCC
T ss_pred hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCc
Confidence 99999999999999999999999999999999999999999994 5543 4444 478888888844
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-51 Score=482.44 Aligned_cols=526 Identities=19% Similarity=0.198 Sum_probs=418.7
Q ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEcc
Q 041683 21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR 100 (743)
Q Consensus 21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~ 100 (743)
+..|.++++++.++. -.++|++|+|++|.+++..+. .|.++++|++|+|++|.......|.+|.++++|++|+++
T Consensus 7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 478889999976543 458999999999999955555 899999999999995544444448899999999999999
Q ss_pred CCcCcccchhhhhcccccccCCccEEEccCCcCcccchhh--ccCCCCCCEEECcCccCccccc-hhccCCCCCCEEEcc
Q 041683 101 FTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQ--LRRFKRLNSLDLSNTILDGSIP-FSLGQISNLEYLDLS 177 (743)
Q Consensus 101 ~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~ 177 (743)
+|.+.+..|..++.+. +|++|+|++|.+.+..+.. |.++++|++|+|++|.+++..+ ..|+++++|++|+++
T Consensus 82 ~N~l~~~~p~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLF-----HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp TCCCCEECTTSSCSCS-----SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred CCcCcccCHhHccCCc-----ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 9999998899999888 9999999999998866654 9999999999999999987655 579999999999999
Q ss_pred CCCCccccChhhhcCC--CCCCEEECCCCcceeecCCCCCCCcc------ccEEEcCCCcCCCCcchhhcCC---CCCCE
Q 041683 178 NNKLNGTVSEIHFVNL--TKLAFFRANGNSLIFKINPNWVPPFQ------LTVLELRSCHLGPRFPLWLQSQ---RELND 246 (743)
Q Consensus 178 ~n~l~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~------L~~L~l~~n~l~~~~~~~l~~l---~~L~~ 246 (743)
+|.+++..+. .+..+ ++|+.|++++|.+.+..+..+..+.+ |+.|++++|.+.+..+..+... .+++.
T Consensus 157 ~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~ 235 (844)
T 3j0a_A 157 SNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235 (844)
T ss_dssp SSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred CCcCCeeCHH-HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence 9999865555 67766 89999999999999888777766655 9999999999887777666543 67888
Q ss_pred EEccCCCC---------ccccChhhhhh--cccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccc
Q 041683 247 LDISSTRI---------SAKIPRGFWNS--IYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGS 315 (743)
Q Consensus 247 L~l~~n~i---------~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~ 315 (743)
+.++.+.. .+.... .+.. .++|+.|++++|.+.+..|..... ...+. .+++++|.+.+.
T Consensus 236 L~l~~~~~~~~~~~~~l~~~~~~-~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-------l~~L~--~L~L~~n~i~~~ 305 (844)
T 3j0a_A 236 LILAHHIMGAGFGFHNIKDPDQN-TFAGLARSSVRHLDLSHGFVFSLNSRVFET-------LKDLK--VLNLAYNKINKI 305 (844)
T ss_dssp EECCSSCCBCSSSCSSSTTGGGT-TTTTTTTSCCCEEECTTCCCCEECSCCSSS-------CCCCC--EEEEESCCCCEE
T ss_pred eecccccccccccccccCCCChh-hhhccccCCccEEECCCCcccccChhhhhc-------CCCCC--EEECCCCcCCCC
Confidence 98874433 221112 2222 368999999999988655432110 01112 788888888776
Q ss_pred cchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcc
Q 041683 316 IFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTS 395 (743)
Q Consensus 316 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 395 (743)
.+.. +..+++|++|++++|.+.+..+..|..+++|++|++++|++.+..+..|..+++|++|++++|.++++.
T Consensus 306 ~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~--- 378 (844)
T 3j0a_A 306 ADEA----FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH--- 378 (844)
T ss_dssp CTTT----TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS---
T ss_pred ChHH----hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc---
Confidence 5543 345788888888888888777888888888888888888888777778888888888888888887432
Q ss_pred cCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCC-ccccCCCCccEEEccCCccccccCc-cccccc
Q 041683 396 FKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLSGTIPR-CINNLS 473 (743)
Q Consensus 396 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~ 473 (743)
.+++|+.|++++|++. .+|.. ..+++.|++++|++.+... ..+..+++|+.|++++|++.+..+. .+..
T Consensus 379 --~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-- 449 (844)
T 3j0a_A 379 --FIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE-- 449 (844)
T ss_dssp --SCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS--
T ss_pred --CCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc--
Confidence 3778888888888887 66643 4578888999888885432 2356788899999999988754432 1222
Q ss_pred cccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCc-----ccCchhhcccCCCCEE
Q 041683 474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFS-----GEIPVEVTNLQGLQSL 548 (743)
Q Consensus 474 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L 548 (743)
++.|+.|++++|.++ +..+..|.++++|++|
T Consensus 450 --------------------------------------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L 485 (844)
T 3j0a_A 450 --------------------------------------------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485 (844)
T ss_dssp --------------------------------------------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECC
T ss_pred --------------------------------------------CCccccccCCCCccccccccccchhhhcCcccccEE
Confidence 344799999999997 4455678999999999
Q ss_pred eCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC-CCC
Q 041683 549 NLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-DLC 627 (743)
Q Consensus 549 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~ 627 (743)
+|++|++++.+|..|..+++|+.|+|++|++++..|..+. ++|+.||+++|++++.+|.. +..+..+++.|| -.|
T Consensus 486 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFIC 561 (844)
T ss_dssp CCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCC
T ss_pred ECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccc
Confidence 9999999999999999999999999999999988777766 89999999999999999975 567888899999 557
Q ss_pred CCCC
Q 041683 628 GDPL 631 (743)
Q Consensus 628 ~~~~ 631 (743)
..+.
T Consensus 562 ~c~~ 565 (844)
T 3j0a_A 562 ECEL 565 (844)
T ss_dssp SSSC
T ss_pred cccc
Confidence 6553
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-49 Score=446.27 Aligned_cols=506 Identities=21% Similarity=0.190 Sum_probs=386.7
Q ss_pred CCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCc
Q 041683 3 GNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGG 82 (743)
Q Consensus 3 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~ 82 (743)
+.+++ .+|..+. +++++|+|++|+++++.+.+|.++++|++|+|++|.++ .++...|+++++|++|+++ ++.+++
T Consensus 16 ~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~-~n~l~~ 90 (570)
T 2z63_A 16 ELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT-GNPIQS 90 (570)
T ss_dssp SSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECT-TCCCCE
T ss_pred CCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCc-CCcCCc
Confidence 34455 4565543 57999999999999888889999999999999999998 4554489999999999999 667877
Q ss_pred ccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcc-cchhhccCCCCCCEEECcCccCcccc
Q 041683 83 KIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFG-HLTNQLRRFKRLNSLDLSNTILDGSI 161 (743)
Q Consensus 83 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~ 161 (743)
..|.+|.++++|++|++++|.+....+..++.+. +|++|++++|.+.+ .+|..|.++++|++|++++|.+++..
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~-----~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-----TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT-----TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred cCHhhhcCccccccccccccccccCCCccccccc-----cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 7788999999999999999998775544566666 89999999999876 46888999999999999999998877
Q ss_pred chhccCCCCC----CEEEccCCCCccccChhhhcCCCCCCEEECCCCccee-ecCCCCCCCccccEEEcCCCcC------
Q 041683 162 PFSLGQISNL----EYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIF-KINPNWVPPFQLTVLELRSCHL------ 230 (743)
Q Consensus 162 ~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l------ 230 (743)
+..++.+++| ++|++++|.+.+..+. .+... +|++|++++|.... ..+..+..+..++.+.+....+
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~-~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 243 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred HHHccchhccchhhhhcccCCCCceecCHH-HhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence 8888888888 8999999999844443 56555 79999988874321 0111122333344333322111
Q ss_pred CCCcchhhcCCC--CCCEEEccCC-CCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEe
Q 041683 231 GPRFPLWLQSQR--ELNDLDISST-RISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDL 307 (743)
Q Consensus 231 ~~~~~~~l~~l~--~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~l 307 (743)
.......+..+. .++.++++++ .+.+..+.. +..+++|+.|++++|.+.+ +|.
T Consensus 244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~-l~~---------------------- 299 (570)
T 2z63_A 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIER-VKD---------------------- 299 (570)
T ss_dssp EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCEECS-CCB----------------------
T ss_pred hhcchhhhccccccchhhhhhhcchhhhhhchhh-hcCcCcccEEEecCccchh-hhh----------------------
Confidence 111112222222 3566777776 555444444 4557888888888887752 221
Q ss_pred cCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCcc
Q 041683 308 SNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNI 387 (743)
Q Consensus 308 s~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 387 (743)
.+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.
T Consensus 300 ---------------~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 300 ---------------FSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG 358 (570)
T ss_dssp ---------------CCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC
T ss_pred ---------------hhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc
Confidence 12224 6888888888887 4443 4678888888888888765544 678888999999888
Q ss_pred ccccC--CcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCC-ccccCCCCccEEEccCCccccc
Q 041683 388 LSGII--PTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLSGT 464 (743)
Q Consensus 388 i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~ 464 (743)
+++.. +..+..+++|++|++++|.+. .++.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 436 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC
T ss_pred cCccccccccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc
Confidence 87654 567788889999999999887 44544 3468889999999998886655 4688889999999999998887
Q ss_pred cCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCc-ccCchhhcccC
Q 041683 465 IPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFS-GEIPVEVTNLQ 543 (743)
Q Consensus 465 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~ 543 (743)
.|..+..++. |++|++++|.++ +.+|..+..++
T Consensus 437 ~~~~~~~l~~----------------------------------------------L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 437 FNGIFNGLSS----------------------------------------------LEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp CTTTTTTCTT----------------------------------------------CCEEECTTCEEGGGEECSCCTTCT
T ss_pred chhhhhcCCc----------------------------------------------CcEEECcCCcCccccchhhhhccc
Confidence 7777776665 488999999987 57888899999
Q ss_pred CCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCccc
Q 041683 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQL 613 (743)
Q Consensus 544 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 613 (743)
+|++|+|++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|+++|.+|....+
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 9999999999999888999999999999999999999988888999999999999999999999986443
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-48 Score=436.27 Aligned_cols=488 Identities=20% Similarity=0.249 Sum_probs=373.4
Q ss_pred CCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCC
Q 041683 2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELG 81 (743)
Q Consensus 2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~ 81 (743)
++|+++ .+|..+. ++|++|+|++|+++++.+..|.++++|++|+|++|.+++..+. +|.++++|++|+++ ++.+.
T Consensus 13 ~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls-~n~l~ 87 (549)
T 2z81_A 13 RSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLS-DNHLS 87 (549)
T ss_dssp TTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECT-TSCCC
T ss_pred CCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh-hccccccCCEEECC-CCccC
Confidence 467777 4565554 7899999999999888888899999999999999999854444 78899999999999 66788
Q ss_pred cccchhccCCCCCCEEEccCCcCcc-cchhhhhcccccccCCccEEEccCCcCcccc-hhhccCCCCCCEEECcCccCcc
Q 041683 82 GKIPTSFGKLCKLTSFSMRFTKLSQ-DISEILGIFSACVANELESLRLGSSQIFGHL-TNQLRRFKRLNSLDLSNTILDG 159 (743)
Q Consensus 82 ~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~ 159 (743)
+..|.+|+++++|++|++++|.+++ ..+..++.++ +|++|++++|.+.+.+ +..|.++++|++|++++|.+++
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-----~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-----NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-----TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-----CccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 7777789999999999999998876 3456666666 8899999888844444 4678888899999999998888
Q ss_pred ccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhc
Q 041683 160 SIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 239 (743)
Q Consensus 160 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 239 (743)
..|..++.+++|++|++++|.+. .++...+..+++|++|++++|.+.+.... ......
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~~~ 220 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS---------------------PLPVDE 220 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------CCSSCC
T ss_pred cChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccccc---------------------ccchhh
Confidence 88888888888999999888876 55554556788888888888776542100 011123
Q ss_pred CCCCCCEEEccCCCCccccChhhh---hhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCcccccc
Q 041683 240 SQRELNDLDISSTRISAKIPRGFW---NSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSI 316 (743)
Q Consensus 240 ~l~~L~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~ 316 (743)
.+++|+.|++++|.+++..+..+. ..+++|+.+++++|.+.+.. .+...
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~--------------------------- 272 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG-DFNPS--------------------------- 272 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS-CCCCC---------------------------
T ss_pred hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc-ccccc---------------------------
Confidence 456677777777777654443332 33567777888877765421 11000
Q ss_pred chhhccCCCCCCCccEEECcCCcCccc-----CCccccCCCCCCEEECCCCcCcccCCccc-cCCCCCcEEEccCccccc
Q 041683 317 FHLICQGENFSNNIEFLKLSKNNFSGD-----IPDCWMNWLRLRALNLGHNNFTGSLPMSI-GTLSSLLSLNLRNNILSG 390 (743)
Q Consensus 317 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~ 390 (743)
....+..+++++.|++.++.+... .+..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|.+++
T Consensus 273 ---~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~ 348 (549)
T 2z81_A 273 ---ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE 348 (549)
T ss_dssp ---TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCH
T ss_pred ---chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccc
Confidence 001223356788888888876532 1222344578999999999998 566555 579999999999999987
Q ss_pred cCC---cccCCCCCCCEEeCCCCcCcccCch--hHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccccc
Q 041683 391 IIP---TSFKNFSSLEVLDLGENELVGSIPS--WIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTI 465 (743)
Q Consensus 391 ~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 465 (743)
..| ..+..+++|++|++++|+++ .++. ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+ +
T Consensus 349 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l 425 (549)
T 2z81_A 349 EYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-V 425 (549)
T ss_dssp HHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-C
T ss_pred ccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-c
Confidence 654 34788999999999999997 4443 34557999999999999999 678888999999999999999873 3
Q ss_pred CccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCC
Q 041683 466 PRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGL 545 (743)
Q Consensus 466 p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 545 (743)
|..+ .+.|++||+++|++++.+ ..+++|
T Consensus 426 ~~~~------------------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L 453 (549)
T 2z81_A 426 KTCI------------------------------------------------PQTLEVLDVSNNNLDSFS----LFLPRL 453 (549)
T ss_dssp CTTS------------------------------------------------CTTCSEEECCSSCCSCCC----CCCTTC
T ss_pred cchh------------------------------------------------cCCceEEECCCCChhhhc----ccCChh
Confidence 3221 123799999999999753 578999
Q ss_pred CEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683 546 QSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS 610 (743)
Q Consensus 546 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 610 (743)
++|+|++|+++ .+|. ...+++|+.|++++|++++..|..+..+++|+.|++++|+++|.+|..
T Consensus 454 ~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 454 QELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp CEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred cEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 99999999999 7776 567999999999999999999989999999999999999999998853
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-47 Score=431.72 Aligned_cols=485 Identities=20% Similarity=0.200 Sum_probs=408.1
Q ss_pred CCCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcC
Q 041683 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDEL 80 (743)
Q Consensus 1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l 80 (743)
|++|.++++.+.+|.++++|++|+|++|++.++.+..|.++++|++|+|++|.++ .++...|.++++|++|+++ ++.+
T Consensus 35 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~-~n~l 112 (570)
T 2z63_A 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV-ETNL 112 (570)
T ss_dssp CCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECT-TSCC
T ss_pred ccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccccc-cccc
Confidence 6889999988999999999999999999999998999999999999999999998 4554489999999999999 6677
Q ss_pred CcccchhccCCCCCCEEEccCCcCcc-cchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCC----CEEECcCc
Q 041683 81 GGKIPTSFGKLCKLTSFSMRFTKLSQ-DISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRL----NSLDLSNT 155 (743)
Q Consensus 81 ~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~Ls~n 155 (743)
.+..+..++++++|++|++++|.+.. .+|..++.++ +|++|++++|.+.+..+..+..+++| ++|++++|
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred ccCCCccccccccccEEecCCCccceecChhhhcccC-----CCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 76666679999999999999999987 4688888888 99999999999998888888888888 89999999
Q ss_pred cCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCc------ceeecCCCCCCCc--cccEEEcCC
Q 041683 156 ILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNS------LIFKINPNWVPPF--QLTVLELRS 227 (743)
Q Consensus 156 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~------~~~~~~~~~~~~~--~L~~L~l~~ 227 (743)
.+++..|..|..+ +|++|++++|..........+..++.++...+.... +.......+..+. .++.+++++
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 9998888888766 899999999865432222357778877776654322 2222223333333 466777877
Q ss_pred C-cCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEE
Q 041683 228 C-HLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFD 306 (743)
Q Consensus 228 n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ 306 (743)
+ .+.+..+..+..+++|++|++++|.+. .+|..+.. + +|+.|++++|.+. .+|.
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~-~-~L~~L~l~~n~~~-~l~~--------------------- 321 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN-F-GWQHLELVNCKFG-QFPT--------------------- 321 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSC-C-CCSEEEEESCBCS-SCCB---------------------
T ss_pred chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhcc-C-CccEEeeccCccc-ccCc---------------------
Confidence 7 666778888999999999999999997 57776544 4 8999999999876 2221
Q ss_pred ecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccC--CccccCCCCCcEEEcc
Q 041683 307 LSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSL--PMSIGTLSSLLSLNLR 384 (743)
Q Consensus 307 ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~ 384 (743)
..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|+++
T Consensus 322 ------------------~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 381 (570)
T 2z63_A 322 ------------------LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381 (570)
T ss_dssp ------------------CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred ------------------ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence 1257899999999998866554 78899999999999998654 6778899999999999
Q ss_pred CccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccc-c
Q 041683 385 NNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS-G 463 (743)
Q Consensus 385 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 463 (743)
+|.+.+..+. +..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..|..+.++++|+.|++++|++. +
T Consensus 382 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 460 (570)
T 2z63_A 382 FNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460 (570)
T ss_dssp SCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence 9999876555 9999999999999999986656444557999999999999999888999999999999999999997 5
Q ss_pred ccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccC
Q 041683 464 TIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQ 543 (743)
Q Consensus 464 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 543 (743)
.+|..+..++. |++|++++|++++..|..|..++
T Consensus 461 ~~p~~~~~l~~----------------------------------------------L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 461 FLPDIFTELRN----------------------------------------------LTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp EECSCCTTCTT----------------------------------------------CCEEECTTSCCCEECTTTTTTCT
T ss_pred cchhhhhcccC----------------------------------------------CCEEECCCCccccCChhhhhccc
Confidence 67877776666 49999999999999899999999
Q ss_pred CCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCc
Q 041683 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQ 585 (743)
Q Consensus 544 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 585 (743)
+|++|++++|++++..|..|..+++|+.|++++|++++..|.
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999999988888899999999999999999987764
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.9e-45 Score=420.52 Aligned_cols=526 Identities=20% Similarity=0.177 Sum_probs=392.3
Q ss_pred cCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCccc
Q 041683 5 QFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKI 84 (743)
Q Consensus 5 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~ 84 (743)
+++ .+|..+. +++++|||++|+|+++.+.+|.++++|++|+|++|.|+ .++..+|+++++|++|+|+ +|.+++..
T Consensus 42 ~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls-~N~l~~l~ 116 (635)
T 4g8a_A 42 NFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT-GNPIQSLA 116 (635)
T ss_dssp CCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECT-TCCCCEEC
T ss_pred CcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEcc-CCcCCCCC
Confidence 455 4666553 37999999999999998999999999999999999998 6666589999999999999 66788777
Q ss_pred chhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcc-cchhhccCCCCCCEEECcCccCccccch
Q 041683 85 PTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFG-HLTNQLRRFKRLNSLDLSNTILDGSIPF 163 (743)
Q Consensus 85 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 163 (743)
+.+|.++++|++|++++|++++..+..++.++ +|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+.
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~-----~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLK-----TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT-----TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCc-----ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 78899999999999999999886666778777 99999999999965 4678889999999999999999988888
Q ss_pred hccCCCC----CCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeec-CCCCCCCccccEEEcCCCc------CCC
Q 041683 164 SLGQISN----LEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKI-NPNWVPPFQLTVLELRSCH------LGP 232 (743)
Q Consensus 164 ~~~~l~~----L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~------l~~ 232 (743)
.|..+.+ ...++++.|.+. .++...+ ....++.+++.+|...... ...+..+..++...+..+. +..
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred cccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 7765544 347889999987 4544233 3445667777776443211 1122333344433332211 112
Q ss_pred CcchhhcCCCCCCEEEccCCCCccc--cChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCC
Q 041683 233 RFPLWLQSQRELNDLDISSTRISAK--IPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNN 310 (743)
Q Consensus 233 ~~~~~l~~l~~L~~L~l~~n~i~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n 310 (743)
.....+.....+...++..+..... .....+....+++.+++.++.+....+ +... ..+ ..++++++
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~--------~~L--~~L~l~~~ 338 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYN--------FGW--QHLELVNC 338 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSC--------CCC--SEEEEESC
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccc--------hhh--hhhhcccc
Confidence 2223333344444444433322111 111122334556666666655442211 1000 001 14555555
Q ss_pred ccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcc--cCCccccCCCCCcEEEccCccc
Q 041683 311 ALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTG--SLPMSIGTLSSLLSLNLRNNIL 388 (743)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i 388 (743)
.+.+..+. .+..|+.+++++|.+.... ....+++|+.|++++|.+.. ..+..+..+.+|+.+++..|.+
T Consensus 339 ~~~~~~~~-------~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~ 409 (635)
T 4g8a_A 339 KFGQFPTL-------KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV 409 (635)
T ss_dssp EESSCCCC-------BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSE
T ss_pred cccCcCcc-------cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccc
Confidence 55443221 2467899999998876433 34578999999999999863 4455667788999999999988
Q ss_pred cccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccc-cccCc
Q 041683 389 SGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS-GTIPR 467 (743)
Q Consensus 389 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~ 467 (743)
... +..+..+++|+.+++++|......+...+..+++++.+++++|.+.+..+..+..+++|+.|++++|.+. +..|.
T Consensus 410 ~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~ 488 (635)
T 4g8a_A 410 ITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 488 (635)
T ss_dssp EEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred ccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCch
Confidence 754 4568889999999999998876666666667899999999999999888889999999999999999854 34666
Q ss_pred cccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCE
Q 041683 468 CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQS 547 (743)
Q Consensus 468 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 547 (743)
.|..++. |++|||++|++++..|..|.++++|++
T Consensus 489 ~~~~l~~----------------------------------------------L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 489 IFTELRN----------------------------------------------LTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp CCTTCTT----------------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred hhhhccc----------------------------------------------cCEEECCCCccCCcChHHHcCCCCCCE
Confidence 6766655 599999999999999999999999999
Q ss_pred EeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCc-CCCCeeeCcCCcccccCCC
Q 041683 548 LNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNL-SFLNHLNLSNNNLVGKIPS 609 (743)
Q Consensus 548 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~ 609 (743)
|+|++|+|++..|..|..+++|++|||++|++++..|..+..+ ++|++|+|++|+++|.+.-
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 9999999998889999999999999999999999999999988 6899999999999998764
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.5e-46 Score=416.70 Aligned_cols=464 Identities=17% Similarity=0.180 Sum_probs=323.4
Q ss_pred CCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCC
Q 041683 67 TSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKR 146 (743)
Q Consensus 67 ~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~ 146 (743)
++|++|+++ ++.+++..|.+|.++++|++|++++|++++..+..+..++ +|++|++++|.+.+..+..|+++++
T Consensus 26 ~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-----SLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECC-SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECc-CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-----cCCEEECCCCccCccCHHHhccCCC
Confidence 344555554 3334444444455555555555555555444444444444 5566666666665556666677777
Q ss_pred CCEEECcCccCccc-cchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEc
Q 041683 147 LNSLDLSNTILDGS-IPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLEL 225 (743)
Q Consensus 147 L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 225 (743)
|++|++++|.+++. .|..++++++|++|++++|++.+.++...+.++++|++|++++|.+.+..+..+..+.+|++|++
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 77777777777642 35567777777777777777444565546777777777777777777766666767777777777
Q ss_pred CCCcCCCCcchhhcCCCCCCEEEccCCCCcccc--ChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCC
Q 041683 226 RSCHLGPRFPLWLQSQRELNDLDISSTRISAKI--PRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGP 303 (743)
Q Consensus 226 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~ 303 (743)
++|.+.......+..+++|+.|++++|.+++.. +..+...+++|+.|++++|.+
T Consensus 180 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l------------------------ 235 (549)
T 2z81_A 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL------------------------ 235 (549)
T ss_dssp ECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE------------------------
T ss_pred ccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc------------------------
Confidence 777665333333456777888888877776421 222223345566666655544
Q ss_pred eEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccC------CccccCCCCCCEEECCCCcCcccC-----Cccc
Q 041683 304 IFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDI------PDCWMNWLRLRALNLGHNNFTGSL-----PMSI 372 (743)
Q Consensus 304 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~ 372 (743)
.+..+..+...+..+++|+.+++++|.+.+.. ...+..+.+|+.|+++++.+.... +..+
T Consensus 236 ---------~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~ 306 (549)
T 2z81_A 236 ---------TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306 (549)
T ss_dssp ---------EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred ---------chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhh
Confidence 34444444444555788999999999887532 134567889999999999876321 1223
Q ss_pred cCCCCCcEEEccCccccccCCccc-CCCCCCCEEeCCCCcCcccCchhH--HhcccCCcEEEccCCcCcccCC--ccccC
Q 041683 373 GTLSSLLSLNLRNNILSGIIPTSF-KNFSSLEVLDLGENELVGSIPSWI--GERFSILKILNLRSNKFHGDFP--IQLCG 447 (743)
Q Consensus 373 ~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~~~ 447 (743)
...++|++|++++|.+.. +|..+ ..+++|++|++++|++.+.+|... ...+++|++|++++|++++..+ ..+..
T Consensus 307 ~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 307 SLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385 (549)
T ss_dssp HHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred hhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence 345789999999999984 45444 689999999999999987665432 2368999999999999986532 45889
Q ss_pred CCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEcc
Q 041683 448 LAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVS 527 (743)
Q Consensus 448 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 527 (743)
+++|++|++++|++. .+|..+..++. |++|+++
T Consensus 386 l~~L~~L~Ls~N~l~-~lp~~~~~~~~----------------------------------------------L~~L~Ls 418 (549)
T 2z81_A 386 LKNLTSLDISRNTFH-PMPDSCQWPEK----------------------------------------------MRFLNLS 418 (549)
T ss_dssp CTTCCEEECTTCCCC-CCCSCCCCCTT----------------------------------------------CCEEECT
T ss_pred CCCCCEEECCCCCCc-cCChhhccccc----------------------------------------------ccEEECC
Confidence 999999999999998 56766655544 5999999
Q ss_pred CCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccC
Q 041683 528 KNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKI 607 (743)
Q Consensus 528 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 607 (743)
+|++++ +|..+ .++|++|+|++|++++.+ ..+++|++|++++|+++ .+|. ...+++|++||+++|++++.+
T Consensus 419 ~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 419 STGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp TSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCC
T ss_pred CCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcC
Confidence 999984 44433 268999999999999643 57899999999999999 6666 467899999999999999988
Q ss_pred CCC-cccCCCCCccccCCCC
Q 041683 608 PSS-TQLQSFGASSFAGNDL 626 (743)
Q Consensus 608 p~~-~~~~~l~~~~~~~n~l 626 (743)
|.. ..+..++.+++.+|++
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 490 DGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp TTGGGGCTTCCEEECCSSCB
T ss_pred HHHHhcCcccCEEEecCCCc
Confidence 874 5678888889998854
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.1e-47 Score=430.15 Aligned_cols=358 Identities=16% Similarity=0.240 Sum_probs=256.3
Q ss_pred ccCccccchhccCCCCCCEEEccCCCCccc-----------------cChhhhc--CCCCCCEEECCCCcceeecCCCCC
Q 041683 155 TILDGSIPFSLGQISNLEYLDLSNNKLNGT-----------------VSEIHFV--NLTKLAFFRANGNSLIFKINPNWV 215 (743)
Q Consensus 155 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~ 215 (743)
|.+++ +|..|+++++|++|+|++|.+++. +|. .+. ++++|++|++++|.+.+.++..+.
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 44444 444555555555555555555432 443 333 555555555555555555555555
Q ss_pred CCccccEEEcCCCc-CCC-CcchhhcCC------CCCCEEEccCCCCccccCh-hhhhhcccCceEecccCccccCCCCC
Q 041683 216 PPFQLTVLELRSCH-LGP-RFPLWLQSQ------RELNDLDISSTRISAKIPR-GFWNSIYQYFYLNISGNQIYGGIPKF 286 (743)
Q Consensus 216 ~~~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~i~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 286 (743)
.+++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. ..+..+++|++|++++|.++|.+|.
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~- 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPA- 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCC-
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhh-
Confidence 55555555555555 544 455555544 66777777777666 4555 2334466666666666666544441
Q ss_pred CCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCC-CCEEECCCCcCc
Q 041683 287 DNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLR-LRALNLGHNNFT 365 (743)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~ 365 (743)
+..+++|++|++++|++. .+|..+..+++ |++|++++|.++
T Consensus 349 -------------------------------------~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 349 -------------------------------------FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp -------------------------------------CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred -------------------------------------hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence 112457888888888888 66777888888 899999988888
Q ss_pred ccCCccccCCC--CCcEEEccCccccccCCcccC-------CCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCc
Q 041683 366 GSLPMSIGTLS--SLLSLNLRNNILSGIIPTSFK-------NFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNK 436 (743)
Q Consensus 366 ~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~-------~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 436 (743)
.+|..+..++ +|++|++++|.+++..|..+. .+++|++|++++|.+. .+|..++..+++|++|++++|+
T Consensus 391 -~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 391 -YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSC
T ss_pred -ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCC
Confidence 6777776654 889999999988888888777 7788999999999998 7888877678899999999999
Q ss_pred CcccCCc-cccCC-------CCccEEEccCCccccccCcccc--ccccccccCccchhhhhhccccCCCCccccccccee
Q 041683 437 FHGDFPI-QLCGL-------AFLQILDVASNSLSGTIPRCIN--NLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLV 506 (743)
Q Consensus 437 l~~~~~~-~~~~l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (743)
+. .+|. .+... ++|+.|++++|++. .+|..+. .++.
T Consensus 469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~-------------------------------- 514 (636)
T 4eco_A 469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY-------------------------------- 514 (636)
T ss_dssp CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT--------------------------------
T ss_pred CC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCC--------------------------------
Confidence 88 4444 33333 38999999999998 6666554 5544
Q ss_pred eeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeC------CCCcCcccCCCCCCCCCCccEEECcCCcCC
Q 041683 507 MKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNL------SHNLLTGRIPDNIGVMRSIESLDLSANQLS 580 (743)
Q Consensus 507 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (743)
|+.|++++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|++++|++
T Consensus 515 --------------L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l- 578 (636)
T 4eco_A 515 --------------LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI- 578 (636)
T ss_dssp --------------CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred --------------cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-
Confidence 5899999999997 8888899999999999 56788889999999999999999999999
Q ss_pred CCCCccccCcCCCCeeeCcCCcccccCC
Q 041683 581 GQIPQSMSNLSFLNHLNLSNNNLVGKIP 608 (743)
Q Consensus 581 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p 608 (743)
+.+|..+. ++|+.||+++|++.+.-+
T Consensus 579 ~~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 579 RKVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred CccCHhHh--CcCCEEECcCCCCccccH
Confidence 57787765 799999999999886543
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-46 Score=417.84 Aligned_cols=443 Identities=17% Similarity=0.200 Sum_probs=241.3
Q ss_pred CCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccC
Q 041683 42 NDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVAN 121 (743)
Q Consensus 42 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~ 121 (743)
++|++|+|++|.++ .++...|.++++|++|+++ +|.+++..|.+|.++++|++|++++|+++. +|.. .++
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~----- 90 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIIS-HNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTV----- 90 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECC-SSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCC-----
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecC-CCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccC-----
Confidence 44444444444444 2222244444444444444 333444444444444444444444444442 2222 222
Q ss_pred CccEEEccCCcCcc-cchhhccCCCCCCEEECcCccCccccchhccCCCCC--CEEEccCCCC--ccccChhhhcCCC-C
Q 041683 122 ELESLRLGSSQIFG-HLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNL--EYLDLSNNKL--NGTVSEIHFVNLT-K 195 (743)
Q Consensus 122 ~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~-~ 195 (743)
+|++|++++|.+.+ ..|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..+. .+..+. .
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~-~l~~l~~~ 166 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPE-GLQDFNTE 166 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTT-TTTTCCEE
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccc-cccccccc
Confidence 45555555555544 234455555555555555555543 234444444 5555555555 333332 233332 1
Q ss_pred CCEEECCCCcceeecCC-CCCCCccccEEEcCCCc-------CCCCcchhhcCCCCCCEEEccCCCCccccChhhhh--h
Q 041683 196 LAFFRANGNSLIFKINP-NWVPPFQLTVLELRSCH-------LGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWN--S 265 (743)
Q Consensus 196 L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~--~ 265 (743)
...+++++|.+.+..+. .+..+.+|+.+++++|. +.+..+ .+..+++|+.|++++|.+++..+..+.. .
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 245 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhh
Confidence 22344455544432222 33445555555555554 222333 5677788888888887776543332221 1
Q ss_pred cccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCC
Q 041683 266 IYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIP 345 (743)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 345 (743)
.++|++|++++|.+.+.+|...+. .....+++|+.+++++|.+ .+|
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~--------------------------------~~~~~l~~L~~l~l~~n~~--~~p 291 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFD--------------------------------YSGTSLKALSIHQVVSDVF--GFP 291 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCC--------------------------------CCSCCCCEEEEEEEEECCC--CSC
T ss_pred hCcccEEEeecccccCccccchhh--------------------------------cccccCceeEeccccccce--ecc
Confidence 246777777777766555531100 0012356677777777776 233
Q ss_pred -ccccCC---CCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcc--cCchh
Q 041683 346 -DCWMNW---LRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVG--SIPSW 419 (743)
Q Consensus 346 -~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~ 419 (743)
..+..+ .+|+.|++++|.+.... .+..+++|++|++++|.+++..|..+..+++|++|++++|++.+ .+|..
T Consensus 292 ~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 369 (520)
T 2z7x_B 292 QSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369 (520)
T ss_dssp THHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred hhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH
Confidence 333333 45777777777665321 12456667777777777666666666666666666666666653 22222
Q ss_pred HHhcccCCcEEEccCCcCcccCCc-cccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcc
Q 041683 420 IGERFSILKILNLRSNKFHGDFPI-QLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSE 498 (743)
Q Consensus 420 ~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 498 (743)
+. .+++|++|++++|.+.+.+|. .+..+++|
T Consensus 370 ~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L----------------------------------------------- 401 (520)
T 2z7x_B 370 TT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSL----------------------------------------------- 401 (520)
T ss_dssp HT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTC-----------------------------------------------
T ss_pred Hh-hCCCCCEEECCCCcCCcccccchhccCccC-----------------------------------------------
Confidence 22 455555555555555542332 23444444
Q ss_pred cccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCc
Q 041683 499 IFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQ 578 (743)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 578 (743)
++|++++|++++..|..+. ++|++|+|++|+++ .+|..+..+++|++|++++|+
T Consensus 402 -----------------------~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 402 -----------------------LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp -----------------------CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred -----------------------CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCc
Confidence 5555555555544444443 67888888888888 777777788889999999998
Q ss_pred CCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683 579 LSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS 609 (743)
Q Consensus 579 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 609 (743)
++...+..+..+++|++|++++|+++|.++.
T Consensus 456 l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 456 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 8843333488889999999999999987764
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.5e-47 Score=429.82 Aligned_cols=427 Identities=19% Similarity=0.238 Sum_probs=246.7
Q ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccc------c------ccCcc--------------------cc--
Q 041683 18 TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQ------G------NVSSL--------------------GL-- 63 (743)
Q Consensus 18 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~------~~~~~--------------------~~-- 63 (743)
.+++.|+|+++++.+.+|..|+++++|++|+|++|.+. + .+|.. .+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47889999999999888999999999999999999762 1 11110 00
Q ss_pred -----------------cCCCCCCEEEcCC-CCcCCcccchhccCCCCCCEEEccCCcCccc-----------------c
Q 041683 64 -----------------ENLTSIKRLYLSE-NDELGGKIPTSFGKLCKLTSFSMRFTKLSQD-----------------I 108 (743)
Q Consensus 64 -----------------~~l~~L~~L~Ls~-~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~ 108 (743)
.....++.+.+.. ++.+++ +|.+++++++|++|++++|.+++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 0011122222221 234444 555566666666666666665553 4
Q ss_pred hhhhh--cccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCcc-Ccc-ccchhccCC------CCCCEEEccC
Q 041683 109 SEILG--IFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTI-LDG-SIPFSLGQI------SNLEYLDLSN 178 (743)
Q Consensus 109 ~~~l~--~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~L~~ 178 (743)
|..++ .++ +|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|++|++++
T Consensus 240 p~~l~~~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 240 TEDLKWDNLK-----DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp TSCCCGGGCT-----TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred chhhhhcccC-----CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 55444 444 55555555555555555555555555555555555 554 455555444 5555555555
Q ss_pred CCCccccCh-hhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCC-CCEEEccCCCCcc
Q 041683 179 NKLNGTVSE-IHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRE-LNDLDISSTRISA 256 (743)
Q Consensus 179 n~l~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~i~~ 256 (743)
|+++ .+|. ..+.++++|++|++++|.+.+.++ .+..+++|++|++++|++. .+|.++..+++ |++|++++|.++
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 5555 4443 235555555555555555554444 4444444555555444444 33434444444 444444444443
Q ss_pred ccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECc
Q 041683 257 KIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLS 336 (743)
Q Consensus 257 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls 336 (743)
.+|..+.. . .+++|++|+++
T Consensus 391 ~lp~~~~~-~-----------------------------------------------------------~l~~L~~L~Ls 410 (636)
T 4eco_A 391 YIPNIFDA-K-----------------------------------------------------------SVSVMSAIDFS 410 (636)
T ss_dssp SCCSCCCT-T-----------------------------------------------------------CSSCEEEEECC
T ss_pred ccchhhhh-c-----------------------------------------------------------ccCccCEEECc
Confidence 23321110 0 02345666666
Q ss_pred CCcCcccCCcccc-------CCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCC-------CCCC
Q 041683 337 KNNFSGDIPDCWM-------NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKN-------FSSL 402 (743)
Q Consensus 337 ~n~l~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-------l~~L 402 (743)
+|.+.+..|..+. .+++|++|++++|++++..+..+..+++|++|++++|.++.+.+..+.. +++|
T Consensus 411 ~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L 490 (636)
T 4eco_A 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490 (636)
T ss_dssp SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGC
T ss_pred CCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCc
Confidence 6666555555555 4455666666666655333333444555666666666555333222222 2266
Q ss_pred CEEeCCCCcCcccCchhHH-hcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCcc
Q 041683 403 EVLDLGENELVGSIPSWIG-ERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSY 481 (743)
Q Consensus 403 ~~L~Ls~n~i~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 481 (743)
++|++++|+++ .+|..++ ..+++|+.|++++|++.+ +|..+..+++|+.|++++|+
T Consensus 491 ~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~--------------------- 547 (636)
T 4eco_A 491 TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR--------------------- 547 (636)
T ss_dssp CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB---------------------
T ss_pred cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc---------------------
Confidence 66666666665 5555443 245666666666666664 55555566666666665553
Q ss_pred chhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCC
Q 041683 482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD 561 (743)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 561 (743)
++++|++.+.+|..+.++++|++|+|++|+++ .+|.
T Consensus 548 -------------------------------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~ 583 (636)
T 4eco_A 548 -------------------------------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNE 583 (636)
T ss_dssp -------------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCS
T ss_pred -------------------------------------------ccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCH
Confidence 12567788888999999999999999999994 8888
Q ss_pred CCCCCCCccEEECcCCcCCCCC
Q 041683 562 NIGVMRSIESLDLSANQLSGQI 583 (743)
Q Consensus 562 ~~~~l~~L~~L~Ls~N~l~~~~ 583 (743)
.+. ++|+.|++++|++....
T Consensus 584 ~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 584 KIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCC--TTCCEEECCSCTTCEEE
T ss_pred hHh--CcCCEEECcCCCCcccc
Confidence 766 79999999999887543
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.7e-45 Score=420.97 Aligned_cols=462 Identities=18% Similarity=0.186 Sum_probs=225.7
Q ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEEc-CCCccccccCcccc---------------------------------
Q 041683 18 TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSV-YSNRLQGNVSSLGL--------------------------------- 63 (743)
Q Consensus 18 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~--------------------------------- 63 (743)
.+++.|+|++|++.+.+|..|+++++|++|+| ++|.+.|..+....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46888999999998888888999999999999 88877655332100
Q ss_pred -----------------cCCCCCCEEEcCC-CCcCCcccchhccCCCCCCEEEccCCcCccc-chhhhhcccccccCCcc
Q 041683 64 -----------------ENLTSIKRLYLSE-NDELGGKIPTSFGKLCKLTSFSMRFTKLSQD-ISEILGIFSACVANELE 124 (743)
Q Consensus 64 -----------------~~l~~L~~L~Ls~-~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~~~~~~L~ 124 (743)
.....++.+.++. +|.+++ +|..++++++|++|++++|.+++. ++...
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~------------ 469 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW------------ 469 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC------------
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc------------
Confidence 0011122222221 233443 555555555555555555555541 00000
Q ss_pred EEEccCCcCcccchhhcc--CCCCCCEEECcCccCccccchhccCCCCCCEEEccCCC-Ccc-ccChhhhc-------CC
Q 041683 125 SLRLGSSQIFGHLTNQLR--RFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK-LNG-TVSEIHFV-------NL 193 (743)
Q Consensus 125 ~L~L~~n~~~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~-------~l 193 (743)
+..+.|...+.+|..++ ++++|++|+|++|.+.+.+|..|+++++|++|++++|+ +++ .+|. .+. .+
T Consensus 470 -~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l 547 (876)
T 4ecn_A 470 -EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTG 547 (876)
T ss_dssp -SCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTT
T ss_pred -cccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhccccc
Confidence 00000000002444443 45555555555555444455455555555555555554 443 3333 122 22
Q ss_pred CCCCEEECCCCcceeecCC--CCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhccc-Cc
Q 041683 194 TKLAFFRANGNSLIFKINP--NWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQ-YF 270 (743)
Q Consensus 194 ~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~-L~ 270 (743)
++|++|++++|.+. .++. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.++ .+|..+.. +++ |+
T Consensus 548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~ 622 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVE 622 (876)
T ss_dssp TTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCC
T ss_pred CCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCC
Confidence 35555555555544 3333 4444555555555555554 344 4555555555555555554 34443222 333 44
Q ss_pred eEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccc--
Q 041683 271 YLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCW-- 348 (743)
Q Consensus 271 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-- 348 (743)
.|++++|.++ .+|.... ....++|+.|++++|++.+.+|...
T Consensus 623 ~L~Ls~N~L~-~lp~~~~-----------------------------------~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 623 GLGFSHNKLK-YIPNIFN-----------------------------------AKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp EEECCSSCCC-SCCSCCC-----------------------------------TTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred EEECcCCCCC-cCchhhh-----------------------------------ccccCCCCEEECcCCcCCCccccchhh
Confidence 4444444433 2221000 0001235555555555544333211
Q ss_pred -c--CCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccC-------CCCCCCEEeCCCCcCcccCch
Q 041683 349 -M--NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFK-------NFSSLEVLDLGENELVGSIPS 418 (743)
Q Consensus 349 -~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-------~l~~L~~L~Ls~n~i~~~~~~ 418 (743)
. .+++|+.|++++|.++...+..+..+++|++|++++|.++.+.+..+. ++++|+.|+|++|++. .+|.
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~ 745 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence 1 122444444444444422111222344444444444444422222221 1224555555555554 4444
Q ss_pred hHH-hcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCc
Q 041683 419 WIG-ERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQS 497 (743)
Q Consensus 419 ~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 497 (743)
.++ ..+++|+.|+|++|++.+ +|..+..+++|+.|+|++|+
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------------------------- 787 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------------------------- 787 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-------------------------------------
T ss_pred HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-------------------------------------
Confidence 432 234455555555555553 34444455555555555443
Q ss_pred ccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCC
Q 041683 498 EIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSAN 577 (743)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 577 (743)
++++|++.+.+|..+.++++|+.|+|++|++ +.+|..+. ++|+.|||++|
T Consensus 788 ---------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 788 ---------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp ---------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSC
T ss_pred ---------------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCC
Confidence 1234666667777777777777777777777 46676654 57777777777
Q ss_pred cCCCCCCccccCcCCCCeeeCcCCccc
Q 041683 578 QLSGQIPQSMSNLSFLNHLNLSNNNLV 604 (743)
Q Consensus 578 ~l~~~~p~~l~~l~~L~~L~ls~N~l~ 604 (743)
++....+..+.....+..+.+.+|++.
T Consensus 838 ~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 838 PNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp TTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCCccChHHccccccchheeecCCCcc
Confidence 777666665555555666666666554
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.7e-44 Score=414.37 Aligned_cols=387 Identities=21% Similarity=0.275 Sum_probs=257.8
Q ss_pred CCCCcCCCCCCCCCCCCCCCCEEEC-CCCCCCCCCchh------------------------------------------
Q 041683 1 LSGNQFQGQIPSRLGNLTSLKYLDL-SSNELNSTVLGW------------------------------------------ 37 (743)
Q Consensus 1 Ls~n~i~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~------------------------------------------ 37 (743)
|++|+++|.+|++|++|++|++|+| ++|.+.+..+-.
T Consensus 330 Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~ 409 (876)
T 4ecn_A 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409 (876)
T ss_dssp CTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred CccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence 6789999999999999999999999 888664431100
Q ss_pred ---------hcCCCCCCEEEcCC--CccccccCcccccCCCCCCEEEcCCCCcCCc-----------------ccchhcc
Q 041683 38 ---------LSKVNDLEFLSVYS--NRLQGNVSSLGLENLTSIKRLYLSENDELGG-----------------KIPTSFG 89 (743)
Q Consensus 38 ---------~~~l~~L~~L~Ls~--n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~-----------------~~~~~l~ 89 (743)
......++.+.+.. |.+++ +|. .|+++++|++|+|+ +|.+++ .+|..++
T Consensus 410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls-~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~ 486 (876)
T 4ecn_A 410 RNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFA-NSPFTYDNIAVDWEDANSDYAKQYENEELS 486 (876)
T ss_dssp TCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred hCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECc-CCcCCCCcccccccccccccccccCChhhh
Confidence 01122344444443 88886 888 89999999999999 667877 2666655
Q ss_pred --CCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCc-Ccc-cchhhccCCC-------CCCEEECcCccCc
Q 041683 90 --KLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQ-IFG-HLTNQLRRFK-------RLNSLDLSNTILD 158 (743)
Q Consensus 90 --~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~-~~~-~~~~~l~~l~-------~L~~L~Ls~n~l~ 158 (743)
++++|++|++++|.+.+.+|..++.++ +|++|++++|+ +++ .+|..+..++ +|++|++++|.++
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~-----~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLP-----ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCS-----SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCC-----CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 777777777777766666666666666 66666666666 555 5555444333 6666666666666
Q ss_pred cccch--hccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcch
Q 041683 159 GSIPF--SLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPL 236 (743)
Q Consensus 159 ~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 236 (743)
.+|. .|+++++|++|++++|+++ .+| .+..+++|++|++++|.+. .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-------------------------~lp~ 612 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-------------------------EIPE 612 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-------------------------CCCT
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-------------------------cchH
Confidence 5555 5666666666666666665 555 3555555555555555544 4444
Q ss_pred hhcCCCC-CCEEEccCCCCccccChhhhhh-cccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCcccc
Q 041683 237 WLQSQRE-LNDLDISSTRISAKIPRGFWNS-IYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSG 314 (743)
Q Consensus 237 ~l~~l~~-L~~L~l~~n~i~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~ 314 (743)
.+..+++ |+.|++++|.++ .+|..+... .++|+.|++++|++.+.+|.+....
T Consensus 613 ~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l------------------------ 667 (876)
T 4ecn_A 613 DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM------------------------ 667 (876)
T ss_dssp TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT------------------------
T ss_pred HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh------------------------
Confidence 5555555 666666666665 455433221 1236777777777766555322100
Q ss_pred ccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCcc-ccCC-------CCCcEEEccCc
Q 041683 315 SIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMS-IGTL-------SSLLSLNLRNN 386 (743)
Q Consensus 315 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l-------~~L~~L~L~~n 386 (743)
.....++|+.|++++|.+....+..+..+++|+.|+|++|+++ .+|.. +... ++|++|+|++|
T Consensus 668 --------~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 668 --------DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp --------TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred --------ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC
Confidence 0011357999999999999544444558899999999999999 44543 3322 38999999999
Q ss_pred cccccCCcccC--CCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCc------CcccCCccccCCCCccEEEccC
Q 041683 387 ILSGIIPTSFK--NFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNK------FHGDFPIQLCGLAFLQILDVAS 458 (743)
Q Consensus 387 ~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~ 458 (743)
.++ .+|..+. .+++|+.|+|++|++.+ +|..++ .+++|+.|+|++|+ +.+.+|..+..+++|+.|+|++
T Consensus 739 ~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~-~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 739 KLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL-NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp CCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG-GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred CCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhh-cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence 999 5677776 89999999999999985 888776 79999999998854 4444444444444444444444
Q ss_pred Ccc
Q 041683 459 NSL 461 (743)
Q Consensus 459 N~l 461 (743)
|++
T Consensus 816 N~L 818 (876)
T 4ecn_A 816 NDI 818 (876)
T ss_dssp SCC
T ss_pred CCC
Confidence 444
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.7e-43 Score=400.69 Aligned_cols=529 Identities=18% Similarity=0.163 Sum_probs=389.1
Q ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEcc
Q 041683 21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR 100 (743)
Q Consensus 21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~ 100 (743)
++.+-++-+++.+ |..+. +++++|||++|.|+ .++..+|.++++|++|||+ +|.+++..+.+|.++++|++|+|+
T Consensus 34 ~~~~c~~~~l~~v-P~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls-~N~i~~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 34 ITYQCMELNFYKI-PDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp TEEECTTSCCSSC-CSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECT
T ss_pred CEEECCCCCcCcc-CCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECC-CCcCCCcChhHhcCCCCCCEEEcc
Confidence 4567777777554 43332 47999999999999 6666689999999999999 778888888899999999999999
Q ss_pred CCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccc-cchhccCCCCCCEEEccCC
Q 041683 101 FTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGS-IPFSLGQISNLEYLDLSNN 179 (743)
Q Consensus 101 ~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n 179 (743)
+|+++...+..|..+. +|++|++++|++++..+..|+++++|++|++++|.+++. .|..++.+++|++|++++|
T Consensus 109 ~N~l~~l~~~~f~~L~-----~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLS-----SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TCCCCEECGGGGTTCT-----TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCcCCCCCHHHhcCCC-----CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 9999987777888888 999999999999988888899999999999999999764 5788899999999999999
Q ss_pred CCccccChhhhcCCCC----CCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCC-CcchhhcCCCCCCEEEccCCCC
Q 041683 180 KLNGTVSEIHFVNLTK----LAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGP-RFPLWLQSQRELNDLDISSTRI 254 (743)
Q Consensus 180 ~l~~~~~~~~~~~l~~----L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i 254 (743)
++++..+. .+..+.+ ...++++.|.+....+..+ ....++.+++.+|.... ..+..+..+..++...+..+..
T Consensus 184 ~l~~~~~~-~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 184 KIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp CCCEECGG-GGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred cccccccc-cccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 99854433 5655444 3478999999887655444 44567889998886542 3345677788887766643322
Q ss_pred cc-----ccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCC
Q 041683 255 SA-----KIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNN 329 (743)
Q Consensus 255 ~~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~ 329 (743)
.. ......+.....+...++..+............ ......+ ..+++..+.+..... +.....
T Consensus 262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~----~~~~~~l--~~l~~~~~~~~~~~~------~~~~~~ 329 (635)
T 4g8a_A 262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL----FNCLTNV--SSFSLVSVTIERVKD------FSYNFG 329 (635)
T ss_dssp TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT----TGGGTTC--SEEEEESCEEEECGG------GGSCCC
T ss_pred ccccccccccccccccccchhhhhhhhhhhcccccchhhh----hhhhccc--ccccccccccccccc------cccchh
Confidence 11 122222333455555555544332111110000 0000001 145555554443221 223567
Q ss_pred ccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccc--cCCcccCCCCCCCEEeC
Q 041683 330 IEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSG--IIPTSFKNFSSLEVLDL 407 (743)
Q Consensus 330 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L 407 (743)
++.|++.+|.+....+ ..+..|+.++++.|.+... .....+++|+.|++++|.+.. ..+..+..+.+|+.+++
T Consensus 330 L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~ 404 (635)
T 4g8a_A 330 WQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404 (635)
T ss_dssp CSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred hhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence 8888888887765433 3456788888888877633 234567888888888887753 34455667788888888
Q ss_pred CCCcCcccCchhHHhcccCCcEEEccCCcCcccCC-ccccCCCCccEEEccCCccccccCccccccccccccCccchhhh
Q 041683 408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVI 486 (743)
Q Consensus 408 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 486 (743)
+.|.+. .++..+. .+++|+.+++.++......+ ..|..+++++.+++++|.+.+..+..+..++.
T Consensus 405 ~~~~~~-~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~------------ 470 (635)
T 4g8a_A 405 SFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS------------ 470 (635)
T ss_dssp CSCSEE-EECSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT------------
T ss_pred cccccc-ccccccc-ccccccchhhhhccccccccccccccccccccccccccccccccccccccchh------------
Confidence 888776 3333333 57888888888877664443 35777888888888888888777766655554
Q ss_pred hhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcC-cccCchhhcccCCCCEEeCCCCcCcccCCCCCCC
Q 041683 487 LYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIF-SGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV 565 (743)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 565 (743)
++.|++++|.+ .+..|..|..+++|++|+|++|++++.+|..|.+
T Consensus 471 ----------------------------------L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~ 516 (635)
T 4g8a_A 471 ----------------------------------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516 (635)
T ss_dssp ----------------------------------CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred ----------------------------------hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC
Confidence 59999999975 4467888999999999999999999999999999
Q ss_pred CCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCc-cc-CCCCCccccCCCC
Q 041683 566 MRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSST-QL-QSFGASSFAGNDL 626 (743)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~-~~-~~l~~~~~~~n~l 626 (743)
+++|++|+|++|+|++..|..|..+++|++|||++|++++..|... .+ .+++.+++.+|++
T Consensus 517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 9999999999999999999999999999999999999999998763 23 5678888888854
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.3e-44 Score=398.20 Aligned_cols=457 Identities=18% Similarity=0.175 Sum_probs=328.6
Q ss_pred CEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCcc
Q 041683 45 EFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELE 124 (743)
Q Consensus 45 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~ 124 (743)
++|++++|.++ .+|. .+. ++|++|+++ ++.+.+..|.+|.++++|++|++++|++++..|..+..++ +|+
T Consensus 3 ~~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPK-DLS--QKTTILNIS-QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-----ELE 72 (520)
T ss_dssp CEEECTTSCCS-SCCC-SCC--TTCSEEECC-SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-----TCC
T ss_pred ceEecCCCCcc-cccc-ccc--ccccEEECC-CCcccccChhhccccccccEEecCCCccCCcChHHhhccc-----CCC
Confidence 57999999998 7887 444 889999999 7778877788899999999999999998887788888877 899
Q ss_pred EEEccCCcCcccchhhccCCCCCCEEECcCccCcc-ccchhccCCCCCCEEEccCCCCccccChhhhcCCCCC--CEEEC
Q 041683 125 SLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDG-SIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKL--AFFRA 201 (743)
Q Consensus 125 ~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l 201 (743)
+|++++|++.. +|.. .+++|++|++++|.+++ ..|..|+++++|++|++++|++++ ..+..+++| ++|++
T Consensus 73 ~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 73 YLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLL 145 (520)
T ss_dssp EEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEE
T ss_pred EEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEe
Confidence 99999998874 5544 78889999999998886 367888888899999998888874 246666666 77777
Q ss_pred CCCcc--eeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcc
Q 041683 202 NGNSL--IFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQI 279 (743)
Q Consensus 202 ~~n~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l 279 (743)
++|.+ .+..+..+..+.. ....+++++|.+.+.++...+..+++|+.+++++|..
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~-----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNT-----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCE-----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred eccccccccccccccccccc-----------------------ceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence 77666 4433333333220 1223445555555445544445555666666665541
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccc---cCCCCCCE
Q 041683 280 YGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCW---MNWLRLRA 356 (743)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~ 356 (743)
.... ..+.+.++ .+..+++|+.|++++|.+.+..+..+ ...++|++
T Consensus 203 ~~~~--------------------------~~~~~~~~-----~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 203 DNKC--------------------------SYFLSILA-----KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp TTTT--------------------------HHHHHHHH-----GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred cccc--------------------------ceeecchh-----hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 0000 00011111 22335667777777766653221111 11357888
Q ss_pred EECCCCcCcccCCccc-----cCCCCCcEEEccCccccccCCcccCCC---CCCCEEeCCCCcCcccCchhHHhcccCCc
Q 041683 357 LNLGHNNFTGSLPMSI-----GTLSSLLSLNLRNNILSGIIPTSFKNF---SSLEVLDLGENELVGSIPSWIGERFSILK 428 (743)
Q Consensus 357 L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~ 428 (743)
|++++|++++.+|..+ ..+++|+.+++++|.+ ......+..+ .+|+.|++++|.+. ..+. ...+++|+
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~ 327 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC--PSKISPFL 327 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCC-CCCC--CSSCCCCC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccc-cccc--hhhCCccc
Confidence 8888888777777776 7788888888888887 2222344333 57888888888876 3331 13578899
Q ss_pred EEEccCCcCcccCCccccCCCCccEEEccCCcccc--ccCccccccccccccCccchhhhhhccccCCCCccccccccee
Q 041683 429 ILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG--TIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLV 506 (743)
Q Consensus 429 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (743)
+|++++|++.+..|..+..+++|++|++++|++.+ .+|..+..++.
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~-------------------------------- 375 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS-------------------------------- 375 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT--------------------------------
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC--------------------------------
Confidence 99999999988788888899999999999999885 34455555554
Q ss_pred eeceeeehhcccccccEEEccCCcCcccCch-hhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCc
Q 041683 507 MKGVLVEYNSILNLVRSIDVSKNIFSGEIPV-EVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQ 585 (743)
Q Consensus 507 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 585 (743)
|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|.
T Consensus 376 --------------L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~ 438 (520)
T 2z7x_B 376 --------------LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPK 438 (520)
T ss_dssp --------------CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCG
T ss_pred --------------CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccch
Confidence 58999999999975665 488899999999999999988887765 79999999999999 7888
Q ss_pred cccCcCCCCeeeCcCCcccccCCCC--cccCCCCCccccCCCC
Q 041683 586 SMSNLSFLNHLNLSNNNLVGKIPSS--TQLQSFGASSFAGNDL 626 (743)
Q Consensus 586 ~l~~l~~L~~L~ls~N~l~~~~p~~--~~~~~l~~~~~~~n~l 626 (743)
.+..+++|++|++++|+++. +|.. ..+..+..+++.+|++
T Consensus 439 ~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 439 QVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp GGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred hhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCC
Confidence 77899999999999999995 5543 4567788888888855
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-43 Score=397.24 Aligned_cols=461 Identities=17% Similarity=0.155 Sum_probs=287.6
Q ss_pred CCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCE
Q 041683 17 LTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTS 96 (743)
Q Consensus 17 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~ 96 (743)
+...+++|+++|+++++ |..+. ++|++|+|++|.++ .++...|.++++|++|+++ +|.+++..|.+|.++++|++
T Consensus 30 ~~~~~~l~ls~~~L~~i-p~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLTHV-PKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLS-HNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCCSC-CTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECC-SCCCCEECTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCccC-CCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECC-CCCCCcCCHHHhCCCCCCCE
Confidence 33458899999999764 44343 78999999999998 5554489999999999999 66888888889999999999
Q ss_pred EEccCCcCcccchhhhhcccccccCCccEEEccCCcCccc-chhhccCCCCCCEEECcCccCccccchhccCCCCC--CE
Q 041683 97 FSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGH-LTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNL--EY 173 (743)
Q Consensus 97 L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~ 173 (743)
|++++|.++. +|.. .++ +|++|++++|++.+. .|..|.++++|++|++++|.+++. .+..+++| ++
T Consensus 105 L~Ls~N~l~~-lp~~--~l~-----~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~ 173 (562)
T 3a79_B 105 LDVSHNRLQN-ISCC--PMA-----SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSC 173 (562)
T ss_dssp EECTTSCCCE-ECSC--CCT-----TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEE
T ss_pred EECCCCcCCc-cCcc--ccc-----cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeE
Confidence 9999999874 5544 444 899999999999773 467899999999999999998853 45555555 99
Q ss_pred EEccCCCC--ccccChhhhcCCC--CCCEEECCCCcceeecCC-CCCCCccccEEEcCCCcCC----CCcchhhcCCCCC
Q 041683 174 LDLSNNKL--NGTVSEIHFVNLT--KLAFFRANGNSLIFKINP-NWVPPFQLTVLELRSCHLG----PRFPLWLQSQREL 244 (743)
Q Consensus 174 L~L~~n~l--~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~----~~~~~~l~~l~~L 244 (743)
|++++|.+ ++..+. .+..+. .+ .+++++|.+.+..+. .+..+.+|+.+++++|... ......+..+++|
T Consensus 174 L~L~~n~l~~~~~~~~-~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 174 ILLDLVSYHIKGGETE-SLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251 (562)
T ss_dssp EEEEESSCCCCSSSCC-EEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred EEeecccccccccCcc-cccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence 99999988 655554 455544 22 456677766543222 2334455666666665321 0112234455555
Q ss_pred CEEEccCCCCccccChhhhh--hcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhcc
Q 041683 245 NDLDISSTRISAKIPRGFWN--SIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQ 322 (743)
Q Consensus 245 ~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~ 322 (743)
+.++++++.+.+.....+.. ..++|++|++++|.+++
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----------------------------------------- 290 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE----------------------------------------- 290 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECS-----------------------------------------
T ss_pred eEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeec-----------------------------------------
Confidence 55555555443321111110 11244444444444443
Q ss_pred CCCCCCCccEEECcCCcCcccCCccc-----cCCCCCCEEECCCCcCcccCC-ccccC---CCCCcEEEccCccccccCC
Q 041683 323 GENFSNNIEFLKLSKNNFSGDIPDCW-----MNWLRLRALNLGHNNFTGSLP-MSIGT---LSSLLSLNLRNNILSGIIP 393 (743)
Q Consensus 323 ~~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~-~~~~~---l~~L~~L~L~~n~i~~~~~ 393 (743)
.+|..+ ..++.|+.++++.+.+ .+| ..+.. ..+|++|++++|.+....
T Consensus 291 --------------------~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~- 347 (562)
T 3a79_B 291 --------------------RIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV- 347 (562)
T ss_dssp --------------------CCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred --------------------cccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc-
Confidence 333333 2333333333333333 111 11111 134555555555443211
Q ss_pred cccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCccc--CCccccCCCCccEEEccCCccccccCc-ccc
Q 041683 394 TSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGD--FPIQLCGLAFLQILDVASNSLSGTIPR-CIN 470 (743)
Q Consensus 394 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~ 470 (743)
....+++|++|++++|.+.+.+|..+. .+++|++|++++|++.+. .|..+..+++|++|++++|++.+.+|. .+.
T Consensus 348 -~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 348 -CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp -CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred -CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 113445555555555555543443332 455555555555555532 223455666666666666666653433 233
Q ss_pred ccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeC
Q 041683 471 NLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNL 550 (743)
Q Consensus 471 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 550 (743)
.++. |++|++++|++++..|..+. ++|++|+|
T Consensus 426 ~l~~----------------------------------------------L~~L~l~~n~l~~~~~~~l~--~~L~~L~L 457 (562)
T 3a79_B 426 WAES----------------------------------------------ILVLNLSSNMLTGSVFRCLP--PKVKVLDL 457 (562)
T ss_dssp CCTT----------------------------------------------CCEEECCSSCCCGGGGSSCC--TTCSEEEC
T ss_pred Cccc----------------------------------------------CCEEECCCCCCCcchhhhhc--CcCCEEEC
Confidence 3333 46677777777665555443 68999999
Q ss_pred CCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683 551 SHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS 610 (743)
Q Consensus 551 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 610 (743)
++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|++.|.+|..
T Consensus 458 ~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 458 HNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp CSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred CCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 999998 77777779999999999999999544344899999999999999999988754
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.7e-40 Score=357.73 Aligned_cols=374 Identities=18% Similarity=0.173 Sum_probs=256.5
Q ss_pred CCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEE
Q 041683 145 KRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLE 224 (743)
Q Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 224 (743)
++|++|+|++|.+++..|..|+++++|++|++++|.+.+.++...|.++++|++|++++|.+....+..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45556666666655555555555666666666666555444444555566666666666665555555555566666666
Q ss_pred cCCCcCCCCcchh--hcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCC
Q 041683 225 LRSCHLGPRFPLW--LQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLG 302 (743)
Q Consensus 225 l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~ 302 (743)
+++|.+.+..+.. +..+++|++|++++|.+++..|..++..+++|++|++++|.+.+..+....
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-------------- 175 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL-------------- 175 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG--------------
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh--------------
Confidence 6666655433333 666677777777777776555655555666677666666666543332000
Q ss_pred CeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCcc--------ccCCCCCCEEECCCCcCcccCCccccC
Q 041683 303 PIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDC--------WMNWLRLRALNLGHNNFTGSLPMSIGT 374 (743)
Q Consensus 303 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 374 (743)
. + ...+++.|++++|.+.+..+.. +..+++|++|++++|++++..|..+..
T Consensus 176 -------------------~-l-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 176 -------------------N-F-QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp -------------------G-G-TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred -------------------c-c-ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 0 0 0145677777777776544332 224566777777777777665555543
Q ss_pred C---CCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHH-hcccCCcEEEccCCcCcccCCccccCCCC
Q 041683 375 L---SSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIG-ERFSILKILNLRSNKFHGDFPIQLCGLAF 450 (743)
Q Consensus 375 l---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 450 (743)
. ++|+.|++++|...+... ..+.+.+..+..+. ...++|++|++++|.+.+..|..+..+++
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 300 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTT
T ss_pred cccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCC
Confidence 2 677777777776553211 11111111111111 12468999999999999888888999999
Q ss_pred ccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCc
Q 041683 451 LQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNI 530 (743)
Q Consensus 451 L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 530 (743)
|++|++++|++.+..|..|.+++. |++|++++|+
T Consensus 301 L~~L~Ls~n~l~~~~~~~~~~l~~----------------------------------------------L~~L~Ls~N~ 334 (455)
T 3v47_A 301 LEQLTLAQNEINKIDDNAFWGLTH----------------------------------------------LLKLNLSQNF 334 (455)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTT----------------------------------------------CCEEECCSSC
T ss_pred CCEEECCCCcccccChhHhcCccc----------------------------------------------CCEEECCCCc
Confidence 999999999999887877777666 4899999999
Q ss_pred CcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683 531 FSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS 610 (743)
Q Consensus 531 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 610 (743)
+++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|+++|.+|..
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 99888999999999999999999999888999999999999999999999877788899999999999999999999975
Q ss_pred ccc
Q 041683 611 TQL 613 (743)
Q Consensus 611 ~~~ 613 (743)
..+
T Consensus 415 ~~l 417 (455)
T 3v47_A 415 DYL 417 (455)
T ss_dssp HHH
T ss_pred hHH
Confidence 433
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-40 Score=373.22 Aligned_cols=459 Identities=18% Similarity=0.191 Sum_probs=313.3
Q ss_pred CCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccc
Q 041683 40 KVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119 (743)
Q Consensus 40 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 119 (743)
.+...+++++++|.++ .+|. .+. ++|++|+++ ++.+++..|.+|.++++|++|++++|.+++..|..+..++
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~-~~~--~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--- 100 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPK-DLP--PRTKALSLS-QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ--- 100 (562)
T ss_dssp ----CCEEECTTSCCC-SCCT-TSC--TTCCEEECC-SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT---
T ss_pred ccCCCcEEEcCCCCCc-cCCC-CCC--CCcCEEECC-CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC---
Confidence 3445578888888887 5776 332 678888888 6667776677788888888888888777766666666666
Q ss_pred cCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccc-cchhccCCCCCCEEEccCCCCccccChhhhcCCCCC--
Q 041683 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGS-IPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKL-- 196 (743)
Q Consensus 120 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L-- 196 (743)
+|++|++++|.+.. +|.. .+++|++|++++|.+++. .|..|+++++|++|++++|++++ . .+..+++|
T Consensus 101 --~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L 171 (562)
T 3a79_B 101 --DLEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHLHL 171 (562)
T ss_dssp --TCCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTSCE
T ss_pred --CCCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-C---chhhhhhcee
Confidence 77777777777753 4433 667777777777777653 34667777777777777776652 1 23333443
Q ss_pred CEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCC-CCCEEEccCCCCccccChhhhhhcccCceEecc
Q 041683 197 AFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQR-ELNDLDISSTRISAKIPRGFWNSIYQYFYLNIS 275 (743)
Q Consensus 197 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~ 275 (743)
++|++++|.+.. .+..|..+..+. ..-.+++++|.+.+.++...+..+++|+.++++
T Consensus 172 ~~L~L~~n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 229 (562)
T 3a79_B 172 SCILLDLVSYHI----------------------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229 (562)
T ss_dssp EEEEEEESSCCC----------------------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEE
T ss_pred eEEEeecccccc----------------------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccc
Confidence 555555555400 333444443332 111445566666555555555556666666666
Q ss_pred cCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCccc----CCccccCC
Q 041683 276 GNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGD----IPDCWMNW 351 (743)
Q Consensus 276 ~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l 351 (743)
+|+... ..+.+. ...+...+.++.|+++++.+.+. .+.. ...
T Consensus 230 ~n~~~~----------------------------~~l~~~-----~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~ 275 (562)
T 3a79_B 230 LNDENC----------------------------QRLMTF-----LSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWP 275 (562)
T ss_dssp CCSTTH----------------------------HHHHHH-----HHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTT
T ss_pred cccccc----------------------------chHHHH-----HHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhc
Confidence 663110 000000 01122345677777766655432 1111 234
Q ss_pred CCCCEEECCCCcCcccCCccc-----cCCCCCcEEEccCccccccCC-cccC---CCCCCCEEeCCCCcCcccCchhHHh
Q 041683 352 LRLRALNLGHNNFTGSLPMSI-----GTLSSLLSLNLRNNILSGIIP-TSFK---NFSSLEVLDLGENELVGSIPSWIGE 422 (743)
Q Consensus 352 ~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~~-~~~~---~l~~L~~L~Ls~n~i~~~~~~~~~~ 422 (743)
++|++|++++|.+++.+|..+ ..++.|+.++++.+.+ ..| ..+. ...+|++|++++|.+. ..+. ..
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~~--~~ 350 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFI-HMVC--PP 350 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCC-CCCC--CS
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcc-cccC--cc
Confidence 589999999999998888876 6666667777777766 233 2222 2267999999999986 3331 13
Q ss_pred cccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccc--cCccccccccccccCccchhhhhhccccCCCCcccc
Q 041683 423 RFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGT--IPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIF 500 (743)
Q Consensus 423 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (743)
.+++|++|++++|++.+..|..+.++++|+.|++++|++.+. +|..+..++.
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~-------------------------- 404 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS-------------------------- 404 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT--------------------------
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC--------------------------
Confidence 688999999999999988899999999999999999999863 2344555554
Q ss_pred cccceeeeceeeehhcccccccEEEccCCcCcccCch-hhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcC
Q 041683 501 EDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPV-EVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQL 579 (743)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 579 (743)
|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|+.|++++|++
T Consensus 405 --------------------L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l 462 (562)
T 3a79_B 405 --------------------LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI 462 (562)
T ss_dssp --------------------CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCC
T ss_pred --------------------CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcC
Confidence 59999999999985554 588999999999999999988887665 7999999999999
Q ss_pred CCCCCccccCcCCCCeeeCcCCcccccCCC--CcccCCCCCccccCCCC
Q 041683 580 SGQIPQSMSNLSFLNHLNLSNNNLVGKIPS--STQLQSFGASSFAGNDL 626 (743)
Q Consensus 580 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~--~~~~~~l~~~~~~~n~l 626 (743)
+ .+|..+..+++|++|++++|++++ +|. ...++.++.+++.+|++
T Consensus 463 ~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 463 M-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp C-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCB
T ss_pred c-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCc
Confidence 9 677777799999999999999995 554 35677788888888854
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-38 Score=347.75 Aligned_cols=385 Identities=20% Similarity=0.219 Sum_probs=263.8
Q ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCccc-chhccCCCCCCEEEc
Q 041683 21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKI-PTSFGKLCKLTSFSM 99 (743)
Q Consensus 21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~-~~~l~~l~~L~~L~L 99 (743)
+.++.++++++.+. . + .++|++|+|++|.+++..+. .|.++++|++|+++ ++.+.+.+ +.+|.++++|++|++
T Consensus 13 ~~~~c~~~~l~~lp-~-l--~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~-~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 13 YNAICINRGLHQVP-E-L--PAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVE-QQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TEEECCSSCCSSCC-C-C--CTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECC-CCSTTCEECTTTTTTCTTCCEEEC
T ss_pred cccCcCCCCcccCC-C-C--CCccCEEEecCCccCcCChh-HhccCccccEEECc-CCcccceECcccccccccCCEEeC
Confidence 45667777664433 2 2 26677777777777744344 67777777777777 44444333 455666666666666
Q ss_pred cCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhh--ccCCCCCCEEECcCccCccccchh-ccCCCCCCEEEc
Q 041683 100 RFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQ--LRRFKRLNSLDLSNTILDGSIPFS-LGQISNLEYLDL 176 (743)
Q Consensus 100 ~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L 176 (743)
++|.+++..|..++.++ +|++|++++|.+.+..+.. +..+++|++|++++|.+++..|.. +.++++|++|++
T Consensus 87 s~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLA-----NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp TTCTTCEECTTTTTTCT-----TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred CCCccCccChhhccCcc-----cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 66666555555555554 5555555555555433332 555555555555555555444443 455555555555
Q ss_pred cCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCC--ccccEEEcCCCcCCCCcchh--------hcCCCCCCE
Q 041683 177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPP--FQLTVLELRSCHLGPRFPLW--------LQSQRELND 246 (743)
Q Consensus 177 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~--------l~~l~~L~~ 246 (743)
++|+++ +..+..+..+ .+++.|++++|.+....+.+ +..+++|++
T Consensus 162 ~~n~l~-------------------------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~ 216 (455)
T 3v47_A 162 TFNKVK-------------------------SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216 (455)
T ss_dssp TTCCBS-------------------------CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEE
T ss_pred CCCccc-------------------------ccChhhhhccccccccccccccCcccccchhhccccccccccccceeee
Confidence 555554 3333333322 34555556655555433332 235577888
Q ss_pred EEccCCCCccccChhhhhhc--ccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCC
Q 041683 247 LDISSTRISAKIPRGFWNSI--YQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGE 324 (743)
Q Consensus 247 L~l~~n~i~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~ 324 (743)
|++++|.+++..|..+.... .+++.|++++|...+..... +.+.+.....+..
T Consensus 217 L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~-- 271 (455)
T 3v47_A 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH-----------------------TNFKDPDNFTFKG-- 271 (455)
T ss_dssp EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC-----------------------CSSCCCCTTTTGG--
T ss_pred EecCCCcccccchhhhhccccccceeeEeeccccccccccch-----------------------hhhccCccccccc--
Confidence 88888888877776665532 67888888888765422110 0111100000000
Q ss_pred CCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCE
Q 041683 325 NFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV 404 (743)
Q Consensus 325 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 404 (743)
...++|++|++++|.+.+..|..+..+++|++|++++|++++..|..|.++++|++|++++|.+++..+..|..+++|++
T Consensus 272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 01468999999999999999999999999999999999999888999999999999999999999988999999999999
Q ss_pred EeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCc
Q 041683 405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR 467 (743)
Q Consensus 405 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 467 (743)
|++++|++.+..|..+. .+++|++|++++|++++..+..+..+++|++|++++|++.+..|.
T Consensus 352 L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp EECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999999866666654 799999999999999987777889999999999999999987773
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-39 Score=351.59 Aligned_cols=403 Identities=24% Similarity=0.256 Sum_probs=197.1
Q ss_pred CCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCC
Q 041683 16 NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLT 95 (743)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~ 95 (743)
..++|++|++++|.+ +.+|..|+++++|++|++++|.+++.+|. .++++++|+.+++.++ . ..+++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c-~-----------~~~l~ 74 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDC-L-----------DRQAH 74 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHH-H-----------HHTCS
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhh-h-----------ccCCC
Confidence 357888888888888 66777788888888888888888777777 6777777655555411 1 13455
Q ss_pred EEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEE
Q 041683 96 SFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLD 175 (743)
Q Consensus 96 ~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 175 (743)
+|++++|.+++ +|.. .+ +|++|++++|.+.+ +|.. .++|++|++++|.+++ +|.. .++|++|+
T Consensus 75 ~L~l~~~~l~~-lp~~---~~-----~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~ 137 (454)
T 1jl5_A 75 ELELNNLGLSS-LPEL---PP-----HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLG 137 (454)
T ss_dssp EEECTTSCCSC-CCSC---CT-----TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEE
T ss_pred EEEecCCcccc-CCCC---cC-----CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEE
Confidence 66666665544 2211 11 56666666666654 3322 2556666666666653 2211 14566666
Q ss_pred ccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCc
Q 041683 176 LSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRIS 255 (743)
Q Consensus 176 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 255 (743)
+++|+++ .+|. +.++++|++|++++|++.+. +.. ..+|++|++++|++.+ +| .+..+
T Consensus 138 L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l-------------- 194 (454)
T 1jl5_A 138 VSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNL-------------- 194 (454)
T ss_dssp CCSSCCS-SCCC--CTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTC--------------
T ss_pred CcCCCCC-CCcc--cCCCCCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCC--------------
Confidence 6666665 3442 55666666666666655431 111 1244444444444432 22 23444
Q ss_pred cccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEEC
Q 041683 256 AKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKL 335 (743)
Q Consensus 256 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L 335 (743)
++|++|++++|.+++ +|. ..++|++|++
T Consensus 195 -----------~~L~~L~l~~N~l~~-l~~----------------------------------------~~~~L~~L~l 222 (454)
T 1jl5_A 195 -----------PFLTAIYADNNSLKK-LPD----------------------------------------LPLSLESIVA 222 (454)
T ss_dssp -----------TTCCEEECCSSCCSS-CCC----------------------------------------CCTTCCEEEC
T ss_pred -----------CCCCEEECCCCcCCc-CCC----------------------------------------CcCcccEEEC
Confidence 444444444444432 110 0135667777
Q ss_pred cCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCccc
Q 041683 336 SKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGS 415 (743)
Q Consensus 336 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 415 (743)
++|.+. .+| .+..+++|++|++++|++++ +|.. +++|++|++++|.+++ +|.. +++|++|++++|.+.+
T Consensus 223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~- 291 (454)
T 1jl5_A 223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG- 291 (454)
T ss_dssp CSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-
T ss_pred cCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-
Confidence 777666 344 36667777777777777764 3332 3567777777777765 3322 3667777777777763
Q ss_pred CchhHHhcccCCcEEEccCCcCcccCCccccCC-CCccEEEccCCccccccCccccccccccccCccchhhhhhccccCC
Q 041683 416 IPSWIGERFSILKILNLRSNKFHGDFPIQLCGL-AFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSE 494 (743)
Q Consensus 416 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~ 494 (743)
+|. ..++|++|++++|++.+. ..+ ++|++|++++|++.+ +|..
T Consensus 292 l~~----~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~-------------------------- 335 (454)
T 1jl5_A 292 LSE----LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL-------------------------- 335 (454)
T ss_dssp ESC----CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC--------------------------
T ss_pred ccC----cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc--------------------------
Confidence 331 124677777777777642 122 467777777777764 3332
Q ss_pred CCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcc--cCCCCCCCCCCccEE
Q 041683 495 GQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG--RIPDNIGVMRSIESL 572 (743)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L 572 (743)
++.|++|++++|++++ +|. .+++|++|++++|++++ .+|..++.
T Consensus 336 -----------------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~------- 381 (454)
T 1jl5_A 336 -----------------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED------- 381 (454)
T ss_dssp -----------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-------
T ss_pred -----------------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh-------
Confidence 1225777777777773 444 36778888888888876 55555442
Q ss_pred ECcCCcCCCCCCccccCcCCCCeeeCcCCcccc--cCCC
Q 041683 573 DLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVG--KIPS 609 (743)
Q Consensus 573 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~--~~p~ 609 (743)
++.|.+.+.+|.. +++|++||+++|++++ .+|.
T Consensus 382 -L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 382 -LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp -EECCC---------------------------------
T ss_pred -hhhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence 2346666666653 4788888899888887 6664
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.3e-37 Score=334.74 Aligned_cols=400 Identities=23% Similarity=0.287 Sum_probs=246.3
Q ss_pred CCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCC
Q 041683 65 NLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRF 144 (743)
Q Consensus 65 ~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l 144 (743)
+.+.|++|+++ ++.+ +.+|.+++++++|++|++++|.+.+.+|..++.+. +|+.+++++|..
T Consensus 9 ~~~~L~~L~l~-~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~-----~L~~l~l~~c~~----------- 70 (454)
T 1jl5_A 9 SNTFLQEPLRH-SSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQR-----EMAVSRLRDCLD----------- 70 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCH-----HHHHHHHHHHHH-----------
T ss_pred ccccchhhhcc-cCch-hhCChhHhcccchhhhhccCCcccccCCcccccch-----hcchhhhhhhhc-----------
Confidence 35788888888 5566 77888888888888888888888877777777665 554444443321
Q ss_pred CCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEE
Q 041683 145 KRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLE 224 (743)
Q Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 224 (743)
.++++|++++|.+++ +|.. .++|++|++++|.+++ +|. ..++|++|++++|.+.+... + .++|++|+
T Consensus 71 ~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~--~--~~~L~~L~ 137 (454)
T 1jl5_A 71 RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSD--L--PPLLEYLG 137 (454)
T ss_dssp HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCS--C--CTTCCEEE
T ss_pred cCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccC--C--CCCCCEEE
Confidence 345667777766664 3321 2567777777777663 443 13567777777766654211 1 14677777
Q ss_pred cCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCe
Q 041683 225 LRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPI 304 (743)
Q Consensus 225 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (743)
+++|++.+ +| .+..+++|++|++++|.+++ +|.. ..+|++|++++|++++ +|.
T Consensus 138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~~------------------- 190 (454)
T 1jl5_A 138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LPE------------------- 190 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CCC-------------------
T ss_pred CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Ccc-------------------
Confidence 77777765 55 47788888888888888864 5543 2478888888887763 221
Q ss_pred EEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEcc
Q 041683 305 FDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLR 384 (743)
Q Consensus 305 l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 384 (743)
+..+++|++|++++|++.+ +|.. .++|++|++++|.+. .+| .+..+++|++|+++
T Consensus 191 -------------------~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 191 -------------------LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp -------------------CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECC
T ss_pred -------------------ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECC
Confidence 2346789999999999885 3432 258999999999988 566 48889999999999
Q ss_pred CccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccc
Q 041683 385 NNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGT 464 (743)
Q Consensus 385 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 464 (743)
+|.+++. |. .+++|++|++++|++. .+|.. +++|++|++++|++.+. +.. .++|+.|++++|++.+.
T Consensus 246 ~N~l~~l-~~---~~~~L~~L~l~~N~l~-~l~~~----~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i 312 (454)
T 1jl5_A 246 NNLLKTL-PD---LPPSLEALNVRDNYLT-DLPEL----PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL 312 (454)
T ss_dssp SSCCSSC-CS---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE
T ss_pred CCcCCcc-cc---cccccCEEECCCCccc-ccCcc----cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc
Confidence 9998863 33 2478999999999987 46642 57899999999998863 211 26889999999988741
Q ss_pred cCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCC
Q 041683 465 IPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQG 544 (743)
Q Consensus 465 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 544 (743)
+. + .+.|++|++++|++++ +|.. +++
T Consensus 313 -~~----~---------------------------------------------~~~L~~L~Ls~N~l~~-lp~~---~~~ 338 (454)
T 1jl5_A 313 -CD----L---------------------------------------------PPSLEELNVSNNKLIE-LPAL---PPR 338 (454)
T ss_dssp -CC----C---------------------------------------------CTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred -cC----C---------------------------------------------cCcCCEEECCCCcccc-cccc---CCc
Confidence 11 1 1236899999999986 5543 588
Q ss_pred CCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCC--CCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCcccc
Q 041683 545 LQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSG--QIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFA 622 (743)
Q Consensus 545 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~ 622 (743)
|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+.. ++.|.+.|.+|.. +..++.++++
T Consensus 339 L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~--~~~L~~L~ls 404 (454)
T 1jl5_A 339 LERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL--PQNLKQLHVE 404 (454)
T ss_dssp CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------------------
T ss_pred CCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc--cCcCCEEECC
Confidence 999999999998 5666 47899999999999997 56665543 3457888888873 5678888999
Q ss_pred CCCCCC
Q 041683 623 GNDLCG 628 (743)
Q Consensus 623 ~n~l~~ 628 (743)
+|.+.+
T Consensus 405 ~N~l~~ 410 (454)
T 1jl5_A 405 TNPLRE 410 (454)
T ss_dssp ------
T ss_pred CCcCCc
Confidence 997765
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-36 Score=328.34 Aligned_cols=368 Identities=18% Similarity=0.166 Sum_probs=299.4
Q ss_pred cCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCccc
Q 041683 5 QFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKI 84 (743)
Q Consensus 5 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~ 84 (743)
.+.+..+..+.++++|++|++++|.+++. | .|..+++|++|++++|.+++ ++ ++.+++|++|+++ ++.+++.
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls-~N~l~~~- 100 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACD-SNKLTNL- 100 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECC-SSCCSCC-
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECc-CCCCcee-
Confidence 34445566788999999999999999876 4 69999999999999999984 43 8899999999999 6677764
Q ss_pred chhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchh
Q 041683 85 PTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFS 164 (743)
Q Consensus 85 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 164 (743)
+ ++++++|++|++++|++++. + ++.++ +|++|++++|++++. + +..+++|++|++++|...+.+ .
T Consensus 101 ~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~-----~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~ 165 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNKLTKL-D--VSQNP-----LLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--D 165 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC-C--CTTCT-----TCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--C
T ss_pred e--cCCCCcCCEEECCCCcCCee-c--CCCCC-----cCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--c
Confidence 3 88999999999999999873 3 56666 999999999999874 3 889999999999999655454 5
Q ss_pred ccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCC
Q 041683 165 LGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQREL 244 (743)
Q Consensus 165 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 244 (743)
++.+++|++|++++|++++ ++ +..+++|++|++++|.+++. .+..+++|+.|++++|++.+ +| +..+++|
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L 235 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQL 235 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred cccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCC
Confidence 7889999999999999984 54 78899999999999998875 47888999999999999987 45 7889999
Q ss_pred CEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCC
Q 041683 245 NDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGE 324 (743)
Q Consensus 245 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~ 324 (743)
+.|++++|.+++. |. ..+++|+.|++++|.+. .+++++|.+.+.+| .
T Consensus 236 ~~L~l~~N~l~~~-~~---~~l~~L~~L~l~~n~L~-----------------------~L~l~~n~~~~~~~------~ 282 (457)
T 3bz5_A 236 TYFDCSVNPLTEL-DV---STLSKLTTLHCIQTDLL-----------------------EIDLTHNTQLIYFQ------A 282 (457)
T ss_dssp SEEECCSSCCSCC-CC---TTCTTCCEEECTTCCCS-----------------------CCCCTTCTTCCEEE------C
T ss_pred CEEEeeCCcCCCc-CH---HHCCCCCEEeccCCCCC-----------------------EEECCCCccCCccc------c
Confidence 9999999999864 32 34678999999988776 67788888777665 2
Q ss_pred CCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCE
Q 041683 325 NFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV 404 (743)
Q Consensus 325 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 404 (743)
..+++|+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|++++. .+..+++|+.
T Consensus 283 ~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~ 343 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKS 343 (457)
T ss_dssp TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSE
T ss_pred cccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcE
Confidence 3468899999999987666553 3445555555444 7899999999999975 3889999999
Q ss_pred EeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccc
Q 041683 405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINN 471 (743)
Q Consensus 405 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 471 (743)
|++++|++++ ++.|..|++++|.+.|. ..+..|+.+++++|+++|.+|..+..
T Consensus 344 L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 344 LSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp EECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred EECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 9999999983 34567778899988865 34567888999999999999876543
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-36 Score=329.03 Aligned_cols=346 Identities=20% Similarity=0.184 Sum_probs=193.6
Q ss_pred CEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCC
Q 041683 148 NSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRS 227 (743)
Q Consensus 148 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 227 (743)
+.++.+++.++ .+|..+. +++++|+|++|++++ ++...|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45666666666 3454442 466677777776663 3322566666666666666666555444444444444444444
Q ss_pred CcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEe
Q 041683 228 CHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDL 307 (743)
Q Consensus 228 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~l 307 (743)
|.+....+..|..+++|++|++++|.+.+..+.
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----------------------------------------------- 122 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDY----------------------------------------------- 122 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-----------------------------------------------
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChh-----------------------------------------------
Confidence 444433333333334444444433333221111
Q ss_pred cCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCcc
Q 041683 308 SNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNI 387 (743)
Q Consensus 308 s~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 387 (743)
.+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 123 ---------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 123 ---------------MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp ---------------TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred ---------------HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 11224456666666666665555566666666666666666665444455566666666666666
Q ss_pred ccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCc
Q 041683 388 LSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR 467 (743)
Q Consensus 388 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 467 (743)
+.+..+..|..+++|+.|++++|...+.+|...+ ...+|+.|++++|++.+..+..+..+++|
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------- 250 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYL---------------- 250 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTC----------------
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCcccc----------------
Confidence 6655555566666666666666555444444433 22345555555554443222334444444
Q ss_pred cccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCE
Q 041683 468 CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQS 547 (743)
Q Consensus 468 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 547 (743)
+.|++++|.+++..+..|.++++|++
T Consensus 251 ------------------------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 251 ------------------------------------------------------RFLNLSYNPISTIEGSMLHELLRLQE 276 (477)
T ss_dssp ------------------------------------------------------CEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred ------------------------------------------------------CeeECCCCcCCccChhhccccccCCE
Confidence 55555555555555556666777777
Q ss_pred EeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC-CC
Q 041683 548 LNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-DL 626 (743)
Q Consensus 548 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l 626 (743)
|+|++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.|.++..+.+.......+.++ ..
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~ 356 (477)
T 2id5_A 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPT 356 (477)
T ss_dssp EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCB
T ss_pred EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCce
Confidence 77777777777777777777777777777777766666677777777777777777776554333333333444555 44
Q ss_pred CCCC
Q 041683 627 CGDP 630 (743)
Q Consensus 627 ~~~~ 630 (743)
|..|
T Consensus 357 C~~p 360 (477)
T 2id5_A 357 CATP 360 (477)
T ss_dssp EEES
T ss_pred eCCc
Confidence 5443
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.7e-35 Score=317.76 Aligned_cols=345 Identities=24% Similarity=0.317 Sum_probs=194.0
Q ss_pred CCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCC
Q 041683 16 NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLT 95 (743)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~ 95 (743)
.+++|+.|+++++.+..+ + .+..+++|++|+|++|.++ .++. +.++++|++|+++ ++.+.+..+ +.++++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~-~n~l~~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMN-NNQIADITP--LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECC-SSCCCCCGG--GTTCTTCC
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECC-CCccccChh--hcCCCCCC
Confidence 456777888887777553 3 3677778888888888777 4443 7777788888887 556655444 77777777
Q ss_pred EEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEE
Q 041683 96 SFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLD 175 (743)
Q Consensus 96 ~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 175 (743)
+|++++|.+....+ +..++ +|++|++++|.+.+. + .+..+++|++|+++ |.+.+.. .+.++++|++|+
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~-----~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~ 183 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLT-----NLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLD 183 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCT-----TCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEE
T ss_pred EEECCCCCCCCChH--HcCCC-----CCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEE
Confidence 77777777765432 45555 777777777776543 2 36777777777775 4444332 366777777777
Q ss_pred ccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCc
Q 041683 176 LSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRIS 255 (743)
Q Consensus 176 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 255 (743)
+++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+.
T Consensus 184 l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 184 ISSNKVS-DIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp CCSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CcCCcCC-CCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 7777766 333 36666777777777776654433 44455566666666655432 23455555555555555554
Q ss_pred cccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEEC
Q 041683 256 AKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKL 335 (743)
Q Consensus 256 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L 335 (743)
+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++
T Consensus 257 ~~~~---~~~l~~L~~L~l~~n~l~~~~~---------------------------------------~~~l~~L~~L~L 294 (466)
T 1o6v_A 257 NLAP---LSGLTKLTELKLGANQISNISP---------------------------------------LAGLTALTNLEL 294 (466)
T ss_dssp CCGG---GTTCTTCSEEECCSSCCCCCGG---------------------------------------GTTCTTCSEEEC
T ss_pred cchh---hhcCCCCCEEECCCCccCcccc---------------------------------------ccCCCccCeEEc
Confidence 3222 2334445555555444432110 112344555555
Q ss_pred cCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCccc
Q 041683 336 SKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGS 415 (743)
Q Consensus 336 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 415 (743)
++|++.+..+ +..+++|++|++++|++++..| +..+++|++|++++|.+++. ..+..+++|+.|++++|++.+.
T Consensus 295 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC
T ss_pred CCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc
Confidence 5555543322 4444555555555555543332 34445555555555554433 2344455555555555555433
Q ss_pred CchhHHhcccCCcEEEccCCcCc
Q 041683 416 IPSWIGERFSILKILNLRSNKFH 438 (743)
Q Consensus 416 ~~~~~~~~l~~L~~L~L~~n~l~ 438 (743)
.| ...+++|+.|++++|+++
T Consensus 369 ~~---~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 369 TP---LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp GG---GTTCTTCCEEECCCEEEE
T ss_pred ch---hhcCCCCCEEeccCCccc
Confidence 33 123445555555555444
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.9e-35 Score=317.33 Aligned_cols=344 Identities=25% Similarity=0.333 Sum_probs=248.2
Q ss_pred CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683 122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA 201 (743)
Q Consensus 122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 201 (743)
+++.|+++++.+.. +| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+ ++. +.++++|++|++
T Consensus 47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGLTL 119 (466)
T ss_dssp TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEEC
T ss_pred cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCCEEEC
Confidence 67778887777754 33 36677778888888777775433 7777777777777777763 332 666777777777
Q ss_pred CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcccc
Q 041683 202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYG 281 (743)
Q Consensus 202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~ 281 (743)
++|.+....+ +..+++|++|++++|.+.+ ++. +..+++|+.|+++ |.+.+
T Consensus 120 ~~n~l~~~~~--------------------------~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~-~~~~~ 169 (466)
T 1o6v_A 120 FNNQITDIDP--------------------------LKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFG-NQVTD 169 (466)
T ss_dssp CSSCCCCCGG--------------------------GTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEE-ESCCC
T ss_pred CCCCCCCChH--------------------------HcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecC-CcccC
Confidence 7666543321 4455555555555555543 221 3345556666554 22211
Q ss_pred CCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCC
Q 041683 282 GIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH 361 (743)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 361 (743)
. ..+..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 170 ~---------------------------------------~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 170 L---------------------------------------KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATN 208 (466)
T ss_dssp C---------------------------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred c---------------------------------------hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecC
Confidence 0 0123356788888888887643 3477788888888888
Q ss_pred CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccC
Q 041683 362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDF 441 (743)
Q Consensus 362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 441 (743)
|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+..
T Consensus 209 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 209 NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCSEEECCSSCCCCCG
T ss_pred Cccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc-hh--hhcCCCCCEEECCCCccCccc
Confidence 88876544 66788888888888888754 4577888899999999888743 33 346888999999999888654
Q ss_pred CccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccc
Q 041683 442 PIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLV 521 (743)
Q Consensus 442 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 521 (743)
+ +..+++|+.|++++|++.+..+ +..+ +.|
T Consensus 282 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l----------------------------------------------~~L 311 (466)
T 1o6v_A 282 P--LAGLTALTNLELNENQLEDISP--ISNL----------------------------------------------KNL 311 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCSCCGG--GGGC----------------------------------------------TTC
T ss_pred c--ccCCCccCeEEcCCCcccCchh--hcCC----------------------------------------------CCC
Confidence 3 7888899999999998875433 3333 346
Q ss_pred cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCC
Q 041683 522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN 601 (743)
Q Consensus 522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 601 (743)
+.|++++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 899999999987665 78899999999999999864 468899999999999999998877 789999999999999
Q ss_pred ccccc
Q 041683 602 NLVGK 606 (743)
Q Consensus 602 ~l~~~ 606 (743)
++++.
T Consensus 386 ~~~~~ 390 (466)
T 1o6v_A 386 AWTNA 390 (466)
T ss_dssp EEECC
T ss_pred cccCC
Confidence 99974
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.7e-35 Score=316.85 Aligned_cols=361 Identities=18% Similarity=0.170 Sum_probs=213.2
Q ss_pred ccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccc
Q 041683 83 KIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIP 162 (743)
Q Consensus 83 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 162 (743)
..+..++++++|++|++++|.+++. | .++.++ +|++|++++|.+.+. + +..+++|++|++++|.+++. +
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~-----~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDM-T-GIEKLT-----GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCT-----TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C
T ss_pred ccccChhHcCCCCEEEccCCCcccC-h-hhcccC-----CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e
Confidence 3444566677777777777776653 3 345554 677777777776553 2 66667777777777776653 2
Q ss_pred hhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCC
Q 041683 163 FSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQR 242 (743)
Q Consensus 163 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 242 (743)
++++++|++|++++|++++ ++ +..+++|++|++++|.+++. .+..+++|++|++++|...+.. .+..++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred --cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCC
Confidence 6666777777777776663 32 55666666666666665542 2444445555555555322222 233444
Q ss_pred CCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhcc
Q 041683 243 ELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQ 322 (743)
Q Consensus 243 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~ 322 (743)
+|++|++++|.+++ +| +..
T Consensus 171 ~L~~L~ls~n~l~~-l~---l~~--------------------------------------------------------- 189 (457)
T 3bz5_A 171 QLTTLDCSFNKITE-LD---VSQ--------------------------------------------------------- 189 (457)
T ss_dssp TCCEEECCSSCCCC-CC---CTT---------------------------------------------------------
T ss_pred cCCEEECCCCccce-ec---ccc---------------------------------------------------------
Confidence 44444444444432 22 122
Q ss_pred CCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCC
Q 041683 323 GENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSL 402 (743)
Q Consensus 323 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 402 (743)
+++|+.|++++|++++. .+..+++|++|++++|++++ +| +..+++|++|++++|.+++.. +..+++|
T Consensus 190 ----l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L 256 (457)
T 3bz5_A 190 ----NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKL 256 (457)
T ss_dssp ----CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTC
T ss_pred ----CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCC
Confidence 34455555555555543 24555555555555555554 23 455555556666555555432 2344455
Q ss_pred CEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccc
Q 041683 403 EVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD 482 (743)
Q Consensus 403 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 482 (743)
+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|+..+.+|.....+..+.
T Consensus 257 ~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~------ 313 (457)
T 3bz5_A 257 TTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD------ 313 (457)
T ss_dssp CEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC------
T ss_pred CEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec------
Confidence 55554443 23344555555444443 34455666666666655555543332222221
Q ss_pred hhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCC
Q 041683 483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN 562 (743)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 562 (743)
...++.|++|++++|++++. + +.++++|+.|++++|++++
T Consensus 314 --------------------------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~----- 353 (457)
T 3bz5_A 314 --------------------------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD----- 353 (457)
T ss_dssp --------------------------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-----
T ss_pred --------------------------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-----
Confidence 01134478999999999974 3 8889999999999999984
Q ss_pred CCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683 563 IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS 610 (743)
Q Consensus 563 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 610 (743)
++.|+.|++++|.++|. ..+..|+.+++++|+++|.+|..
T Consensus 354 ---l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 354 ---FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp ---CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ---ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 35677778999999876 35677889999999999999974
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=314.02 Aligned_cols=322 Identities=19% Similarity=0.212 Sum_probs=210.9
Q ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEcc
Q 041683 21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR 100 (743)
Q Consensus 21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~ 100 (743)
+.++.++++++.+ |..+ .+++++|+|++|.+++..+. .|.++++|++|+|+ ++.+.+..|.+|.++++|++|+++
T Consensus 14 ~~v~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFVAV-PEGI--PTETRLLDLGKNRIKTLNQD-EFASFPHLEELELN-ENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCSSC-CSCC--CTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCcC-CCCC--CCCCcEEECCCCccceECHh-HccCCCCCCEEECC-CCccCEeChhhhhCCccCCEEECC
Confidence 4566666666443 3222 24667777777777633333 66677777777776 556666666667777777777777
Q ss_pred CCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCC
Q 041683 101 FTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180 (743)
Q Consensus 101 ~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 180 (743)
+|.++...+..+..++ +|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus 89 ~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLS-----NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp SSCCCSCCTTSSTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred CCcCCccCcccccCCC-----CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 7766654444455555 67777777777777667777777777777777777777667777777777777777777
Q ss_pred CccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccCh
Q 041683 181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPR 260 (743)
Q Consensus 181 l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 260 (743)
++ .++...+..+++|+.|++++|.+....+..|..+++|+.|++++|...+..+.......+|++|++++|.++ .+|.
T Consensus 164 l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~ 241 (477)
T 2id5_A 164 LT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPY 241 (477)
T ss_dssp CS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCH
T ss_pred Cc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCH
Confidence 76 455546777777777777777776655555555555555555555444333333333334555555555443 2222
Q ss_pred hhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcC
Q 041683 261 GFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNF 340 (743)
Q Consensus 261 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 340 (743)
..+. .+++|++|++++|.+
T Consensus 242 ~~~~-------------------------------------------------------------~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 242 LAVR-------------------------------------------------------------HLVYLRFLNLSYNPI 260 (477)
T ss_dssp HHHT-------------------------------------------------------------TCTTCCEEECCSSCC
T ss_pred HHhc-------------------------------------------------------------CccccCeeECCCCcC
Confidence 2211 245677777777777
Q ss_pred cccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCccc
Q 041683 341 SGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGS 415 (743)
Q Consensus 341 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 415 (743)
.+..+..|..+++|++|++++|++++..|..|..+++|++|++++|.++++.+..|..+++|++|++++|++...
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 766666777777788888888887777777777788888888888888777767777778888888888877644
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6e-35 Score=300.80 Aligned_cols=258 Identities=32% Similarity=0.560 Sum_probs=242.3
Q ss_pred CCccEEECcCCcCcc--cCCccccCCCCCCEEECCC-CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCE
Q 041683 328 NNIEFLKLSKNNFSG--DIPDCWMNWLRLRALNLGH-NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV 404 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 404 (743)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8899999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCC-CccEEEccCCccccccCccccccccccccCccch
Q 041683 405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLA-FLQILDVASNSLSGTIPRCINNLSAMAITDSYDQ 483 (743)
Q Consensus 405 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~ 483 (743)
|++++|.+.+.+|..+. .+++|++|++++|++.+.+|..+..++ +|+.|++++|++.+.+|..+..+.
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~---------- 198 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---------- 198 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC----------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc----------
Confidence 99999999988888776 799999999999999999999999998 999999999999999998877654
Q ss_pred hhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCC
Q 041683 484 AVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNI 563 (743)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 563 (743)
|++|++++|.+++..|..|..+++|+.|+|++|.+++.+|. +
T Consensus 199 -------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~ 240 (313)
T 1ogq_A 199 -------------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V 240 (313)
T ss_dssp -------------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C
T ss_pred -------------------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c
Confidence 49999999999999999999999999999999999977766 8
Q ss_pred CCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC-CCCCCCCCCC
Q 041683 564 GVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-DLCGDPLSNC 634 (743)
Q Consensus 564 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~~~~c 634 (743)
..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|....++.++.+++.+| .+||.|...|
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence 8899999999999999999999999999999999999999999999988999999999999 6999988777
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3e-33 Score=298.59 Aligned_cols=332 Identities=19% Similarity=0.223 Sum_probs=193.5
Q ss_pred CCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEE
Q 041683 169 SNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLD 248 (743)
Q Consensus 169 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 248 (743)
+++++|++++|.++ .+|...+..+++|++|++++|.+....+..|..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34444444444443 33333344444444444444444444434444444555555555555555555666667777777
Q ss_pred ccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCC
Q 041683 249 ISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN 328 (743)
Q Consensus 249 l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~ 328 (743)
+++|.++ .+|...+..+ +
T Consensus 124 L~~n~l~-~l~~~~~~~l-------------------------------------------------------------~ 141 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNT-------------------------------------------------------------P 141 (390)
T ss_dssp CCSSCCC-CCCTTTTTTC-------------------------------------------------------------T
T ss_pred CCCCccC-cCCHHHhcCC-------------------------------------------------------------C
Confidence 7777665 3444333333 3
Q ss_pred CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCC
Q 041683 329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG 408 (743)
Q Consensus 329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 408 (743)
+|++|++++|.+.+..+..|..+++|++|++++|++++. .+..+++|++|++++|.+++. ...++|++|+++
T Consensus 142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~ 213 (390)
T 3o6n_A 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDAS 213 (390)
T ss_dssp TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECC
T ss_pred CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECC
Confidence 444444444444444444455555555555555555532 133445555555555555432 223456666666
Q ss_pred CCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhh
Q 041683 409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILY 488 (743)
Q Consensus 409 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 488 (743)
+|.+. .+|.. ..++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..++.
T Consensus 214 ~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-------------- 273 (390)
T 3o6n_A 214 HNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR-------------- 273 (390)
T ss_dssp SSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS--------------
T ss_pred CCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccccc--------------
Confidence 66665 33332 235566666666666642 35666666777777777666655655555444
Q ss_pred ccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCC
Q 041683 489 SSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRS 568 (743)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 568 (743)
|++|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++
T Consensus 274 --------------------------------L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~ 319 (390)
T 3o6n_A 274 --------------------------------LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 319 (390)
T ss_dssp --------------------------------CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred --------------------------------CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCc
Confidence 3667777777764 4555667888999999999988 56667888899
Q ss_pred ccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC-CCCCC
Q 041683 569 IESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-DLCGD 629 (743)
Q Consensus 569 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~ 629 (743)
|+.|++++|+++.. | +..+++|+.|++++|++.+..... .+..+....+.++ ..|+.
T Consensus 320 L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 320 LENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCSCCCT
T ss_pred CCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHHH-HHHHHHhhcccccCceecc
Confidence 99999999999854 3 667889999999999998864322 2334444445555 45554
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-32 Score=292.84 Aligned_cols=310 Identities=17% Similarity=0.192 Sum_probs=151.0
Q ss_pred CCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCE
Q 041683 17 LTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTS 96 (743)
Q Consensus 17 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~ 96 (743)
++++++|++++|.+..+.+..|..+++|++|++++|.++ .++...|.++++|++|+++ ++.+.+..|..+.++++|++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECC-CCCCCcCCHHHhcCCCCCCE
Confidence 345555555555555544444555555555555555555 2332245555555555555 44454444555555555555
Q ss_pred EEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEc
Q 041683 97 FSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDL 176 (743)
Q Consensus 97 L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 176 (743)
|++++|.++...+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|++|++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l 193 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTP-----KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 193 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred EECCCCccCcCCHHHhcCCC-----CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence 55555555432222233333 455555555555444444444455555555555544432 1333444445555
Q ss_pred cCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCcc
Q 041683 177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISA 256 (743)
Q Consensus 177 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 256 (743)
++|.++ ... ...+|+.|++++|.+... +. ...++|+.|++++|.+++
T Consensus 194 ~~n~l~-------------------------~~~-----~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 194 SYNLLS-------------------------TLA-----IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTD 240 (390)
T ss_dssp CSSCCS-------------------------EEE-----CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCC
T ss_pred cccccc-------------------------ccC-----CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCcc
Confidence 444443 321 122455555555554422 11 123456666666666653
Q ss_pred ccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECc
Q 041683 257 KIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLS 336 (743)
Q Consensus 257 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls 336 (743)
. . .+..+++|++|++++|.+.+..| ..+..+++|++|+++
T Consensus 241 ~--~-~l~~l~~L~~L~Ls~n~l~~~~~-------------------------------------~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 241 T--A-WLLNYPGLVEVDLSYNELEKIMY-------------------------------------HPFVKMQRLERLYIS 280 (390)
T ss_dssp C--G-GGGGCTTCSEEECCSSCCCEEES-------------------------------------GGGTTCSSCCEEECC
T ss_pred c--H-HHcCCCCccEEECCCCcCCCcCh-------------------------------------hHccccccCCEEECC
Confidence 2 1 22233444444444443332111 111224455555555
Q ss_pred CCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 041683 337 KNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVG 414 (743)
Q Consensus 337 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~ 414 (743)
+|++.+ ++..+..+++|++|++++|++. .+|..+..+++|++|++++|.++... +..+++|+.|++++|++.+
T Consensus 281 ~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 281 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 555553 2333445556666666666665 34444555566666666666655431 4455566666666666553
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-32 Score=309.94 Aligned_cols=333 Identities=19% Similarity=0.228 Sum_probs=209.2
Q ss_pred CCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEE
Q 041683 169 SNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLD 248 (743)
Q Consensus 169 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 248 (743)
.+++.+++++|.+. .+|...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34444444444443 33333344444444444444444444444444444555555555555555555666667777777
Q ss_pred ccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCC
Q 041683 249 ISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN 328 (743)
Q Consensus 249 l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~ 328 (743)
+++|.++ .+|..++.. ++
T Consensus 130 L~~n~l~-~l~~~~~~~-------------------------------------------------------------l~ 147 (597)
T 3oja_B 130 LERNDLS-SLPRGIFHN-------------------------------------------------------------TP 147 (597)
T ss_dssp CCSSCCC-CCCTTTTTT-------------------------------------------------------------CT
T ss_pred eeCCCCC-CCCHHHhcc-------------------------------------------------------------CC
Confidence 7777665 244333232 34
Q ss_pred CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCC
Q 041683 329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG 408 (743)
Q Consensus 329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 408 (743)
+|++|++++|.+.+..|..|..+++|++|++++|.+++. .+..+++|+.|++++|.+++. ...++|+.|+++
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls 219 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDAS 219 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECC
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhheeecc
Confidence 455555555555555555566666666666666666543 134456666666666665532 234566677777
Q ss_pred CCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhh
Q 041683 409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILY 488 (743)
Q Consensus 409 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 488 (743)
+|.+. .++... .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..|..++.|
T Consensus 220 ~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------- 280 (597)
T 3oja_B 220 HNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------- 280 (597)
T ss_dssp SSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-------------
T ss_pred CCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC-------------
Confidence 76665 333322 3567777777777764 2456777777777777777777666666655553
Q ss_pred ccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCC
Q 041683 489 SSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRS 568 (743)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 568 (743)
+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++
T Consensus 281 ---------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~ 325 (597)
T 3oja_B 281 ---------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 325 (597)
T ss_dssp ---------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred ---------------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCC
Confidence 777777777775 4666677899999999999998 67777888999
Q ss_pred ccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC-CCCCCC
Q 041683 569 IESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-DLCGDP 630 (743)
Q Consensus 569 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~ 630 (743)
|+.|++++|++++.. +..+++|+.|++++|+++|..+.. .+..+....+.++ ..|+.+
T Consensus 326 L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 326 LENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred CCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCcc
Confidence 999999999998653 567889999999999999875432 3445555566777 778764
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-31 Score=280.76 Aligned_cols=307 Identities=23% Similarity=0.340 Sum_probs=159.0
Q ss_pred ccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccc
Q 041683 141 LRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQL 220 (743)
Q Consensus 141 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L 220 (743)
+..+++|++|++++|.+... + .+..+++|++|++++|+++ .++. +..+++|++|++++|.+...
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~----------- 103 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI----------- 103 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC-----------
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc-----------
Confidence 45667788888888877743 3 4777778888888887776 3433 66667777777766655421
Q ss_pred cEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCC
Q 041683 221 TVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDL 300 (743)
Q Consensus 221 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l 300 (743)
..+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.....++
T Consensus 104 ---------------~~~~~l~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~~---------------- 149 (347)
T 4fmz_A 104 ---------------SALQNLTNLRELYLNEDNISD-ISP--LANLTKMYSLNLGANHNLSDLS---------------- 149 (347)
T ss_dssp ---------------GGGTTCTTCSEEECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCCCCG----------------
T ss_pred ---------------hHHcCCCcCCEEECcCCcccC-chh--hccCCceeEEECCCCCCccccc----------------
Confidence 134555555555555555543 221 2233344444444332211110
Q ss_pred CCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcE
Q 041683 301 LGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLS 380 (743)
Q Consensus 301 ~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 380 (743)
.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++
T Consensus 150 ----------------------~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 203 (347)
T 4fmz_A 150 ----------------------PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203 (347)
T ss_dssp ----------------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred ----------------------chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccce
Confidence 01123445555555554443221 4444555555555555442211 444444555
Q ss_pred EEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCc
Q 041683 381 LNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNS 460 (743)
Q Consensus 381 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 460 (743)
|++++|.+.+..+ +..+++|++|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|
T Consensus 204 L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L--------- 267 (347)
T 4fmz_A 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKL--------- 267 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC---------
T ss_pred eecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCc---------
Confidence 5555444443322 444444444444444444 2222 12344444444444444421 223344444
Q ss_pred cccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhc
Q 041683 461 LSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVT 540 (743)
Q Consensus 461 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 540 (743)
++|++++|++++. ..+.
T Consensus 268 -------------------------------------------------------------~~L~l~~n~l~~~--~~~~ 284 (347)
T 4fmz_A 268 -------------------------------------------------------------KMLNVGSNQISDI--SVLN 284 (347)
T ss_dssp -------------------------------------------------------------CEEECCSSCCCCC--GGGG
T ss_pred -------------------------------------------------------------CEEEccCCccCCC--hhhc
Confidence 5555555555432 2355
Q ss_pred ccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCccc
Q 041683 541 NLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLV 604 (743)
Q Consensus 541 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 604 (743)
.+++|++|++++|++++..|..++.+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 66667777777776666666666666777777777777665544 556677777777777654
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.1e-31 Score=279.68 Aligned_cols=196 Identities=23% Similarity=0.424 Sum_probs=110.2
Q ss_pred CCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCC
Q 041683 14 LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCK 93 (743)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~ 93 (743)
+..+++|++|++++|.+..+. .+..+++|++|++++|.++ .++. +.++++|++|+++ ++.+++ + .++.++++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~-~n~i~~-~-~~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIG-TNKITD-I-SALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECC-SSCCCC-C-GGGTTCTT
T ss_pred chhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEcc-CCcccC-c-hHHcCCCc
Confidence 446666777777777665432 3666777777777777666 4443 6667777777776 444543 2 24666666
Q ss_pred CCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCE
Q 041683 94 LTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEY 173 (743)
Q Consensus 94 L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 173 (743)
|++|++++|.+....+ +..++ +|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~-----~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLT-----KMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCT-----TCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred CCEEECcCCcccCchh--hccCC-----ceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 6666666666554222 33333 566666666544333332 5555556666665555553322 555555555
Q ss_pred EEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCC
Q 041683 174 LDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTR 253 (743)
Q Consensus 174 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 253 (743)
|++++|.+. .++. +..+++|++|+++ +|.+....+ +..+++|++|++++|.
T Consensus 182 L~l~~n~l~-~~~~--~~~l~~L~~L~l~------------------------~n~l~~~~~--~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 182 LSLNYNQIE-DISP--LASLTSLHYFTAY------------------------VNQITDITP--VANMTRLNSLKIGNNK 232 (347)
T ss_dssp EECTTSCCC-CCGG--GGGCTTCCEEECC------------------------SSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred EEccCCccc-cccc--ccCCCccceeecc------------------------cCCCCCCch--hhcCCcCCEEEccCCc
Confidence 555555554 2222 4444555555544 444443332 5666777777777777
Q ss_pred Ccc
Q 041683 254 ISA 256 (743)
Q Consensus 254 i~~ 256 (743)
+++
T Consensus 233 l~~ 235 (347)
T 4fmz_A 233 ITD 235 (347)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-31 Score=302.00 Aligned_cols=308 Identities=16% Similarity=0.158 Sum_probs=152.0
Q ss_pred CCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccC
Q 041683 42 NDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVAN 121 (743)
Q Consensus 42 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~ 121 (743)
++++.|++++|.++ .+|...|.++++|++|+|+ ++.+.+..|.+|..+++|++|++++|.+++..+..++.++
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----- 123 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP----- 123 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECC-CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC-----
Confidence 44555555555554 3443344555555555555 3344444444555555555555555555554444444444
Q ss_pred CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683 122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA 201 (743)
Q Consensus 122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 201 (743)
+|++|+|++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++ ++ +..+++|+.|++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l 199 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANV 199 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhc
Confidence 55555555555554444445555555555555555555555555555555555555555542 21 344555555555
Q ss_pred CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcccc
Q 041683 202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYG 281 (743)
Q Consensus 202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~ 281 (743)
++|.+.+.. .+..|+.|++++|.+....+.. .++|+.|++++|.+++. . .+..+++|+.|++++|.+.+
T Consensus 200 ~~n~l~~l~-----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~-~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 200 SYNLLSTLA-----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--A-WLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp CSSCCSEEE-----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCE
T ss_pred ccCcccccc-----CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--h-hhccCCCCCEEECCCCccCC
Confidence 555554321 2235566666666554322211 24677777777777541 1 12233344444444443332
Q ss_pred CCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCC
Q 041683 282 GIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH 361 (743)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 361 (743)
..| ..+..+++|+.|++++|.+.+. |..+..+++|++|+|++
T Consensus 269 ~~~-------------------------------------~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 269 IMY-------------------------------------HPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp EES-------------------------------------GGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCS
T ss_pred CCH-------------------------------------HHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCC
Confidence 111 1112234455555555555432 33334455555555555
Q ss_pred CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCc
Q 041683 362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413 (743)
Q Consensus 362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~ 413 (743)
|.++ .+|..+..+++|++|++++|.+++.. +..+++|+.|++++|++.
T Consensus 311 N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 311 NHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred CCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCC
Confidence 5555 34444455555555555555554331 344455555555555554
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1e-31 Score=276.57 Aligned_cols=232 Identities=26% Similarity=0.467 Sum_probs=214.7
Q ss_pred CCCCCccEEECcC-CcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCC
Q 041683 325 NFSNNIEFLKLSK-NNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLE 403 (743)
Q Consensus 325 ~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 403 (743)
..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 3478999999995 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcCcccCchhHHhccc-CCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccc
Q 041683 404 VLDLGENELVGSIPSWIGERFS-ILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD 482 (743)
Q Consensus 404 ~L~Ls~n~i~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 482 (743)
+|++++|++.+.+|..+. .++ +|++|++++|++.+..|..+..++ |+.|++++|++.+..|..+..++.
T Consensus 153 ~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~-------- 222 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN-------- 222 (313)
T ss_dssp EEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSC--------
T ss_pred eEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCC--------
Confidence 999999999989998887 576 999999999999999999999987 999999999999888888877666
Q ss_pred hhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCC
Q 041683 483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN 562 (743)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 562 (743)
|+.|++++|++++.+|. +..+++|++|+|++|++++.+|..
T Consensus 223 --------------------------------------L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 223 --------------------------------------TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp --------------------------------------CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred --------------------------------------CCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence 49999999999977665 888999999999999999999999
Q ss_pred CCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCccccc
Q 041683 563 IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGK 606 (743)
Q Consensus 563 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 606 (743)
+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+..+.
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 999999999999999999999986 8899999999999994443
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.2e-33 Score=307.26 Aligned_cols=188 Identities=23% Similarity=0.209 Sum_probs=101.2
Q ss_pred CccEEECcCCcCccc----CCccccCCCCCCEEECCCCcCcccC-----CccccCCCCCcEEEccCcccccc----CCcc
Q 041683 329 NIEFLKLSKNNFSGD----IPDCWMNWLRLRALNLGHNNFTGSL-----PMSIGTLSSLLSLNLRNNILSGI----IPTS 395 (743)
Q Consensus 329 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~i~~~----~~~~ 395 (743)
+|++|++++|.+... ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 344445554444432 2334445556666666666555321 11222456666666666666543 3445
Q ss_pred cCCCCCCCEEeCCCCcCcccCchhHHh----cccCCcEEEccCCcCccc----CCccccCCCCccEEEccCCccccccCc
Q 041683 396 FKNFSSLEVLDLGENELVGSIPSWIGE----RFSILKILNLRSNKFHGD----FPIQLCGLAFLQILDVASNSLSGTIPR 467 (743)
Q Consensus 396 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 467 (743)
+..+++|++|++++|.+.+..+..+.. ..++|++|++++|.+++. ++..+..+++|++|++++|++.+..+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 556677777777777765433333322 124677777777776643 344455667777777777766643333
Q ss_pred cccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcc----cCchhhcccC
Q 041683 468 CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG----EIPVEVTNLQ 543 (743)
Q Consensus 468 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~ 543 (743)
.+...-. ...+.|++|++++|++++ .+|..+..++
T Consensus 360 ~l~~~l~-----------------------------------------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 360 ELCQGLG-----------------------------------------QPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp HHHHHHT-----------------------------------------STTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHc-----------------------------------------CCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 2221000 002235666666666664 4555666666
Q ss_pred CCCEEeCCCCcCcc
Q 041683 544 GLQSLNLSHNLLTG 557 (743)
Q Consensus 544 ~L~~L~Ls~N~l~~ 557 (743)
+|++|++++|++++
T Consensus 399 ~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 399 SLRELDLSNNCLGD 412 (461)
T ss_dssp CCCEEECCSSSCCH
T ss_pred CccEEECCCCCCCH
Confidence 66666666666653
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=9.4e-34 Score=310.12 Aligned_cols=384 Identities=18% Similarity=0.127 Sum_probs=221.2
Q ss_pred CccEEEccCCcCcccchhh-ccCCCCCCEEECcCccCccc----cchhccCCCCCCEEEccCCCCccccChhhhcCCC--
Q 041683 122 ELESLRLGSSQIFGHLTNQ-LRRFKRLNSLDLSNTILDGS----IPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLT-- 194 (743)
Q Consensus 122 ~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-- 194 (743)
+|++|++++|++....... +..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+......+..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4556666666554333222 45566666666666666532 3445556666666666666665322221222233
Q ss_pred --CCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhh----ccc
Q 041683 195 --KLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNS----IYQ 268 (743)
Q Consensus 195 --~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~----l~~ 268 (743)
+|++|++++|.+..... ..++..+..+++|++|++++|.+++..+..+... .++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 143 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143 (461)
T ss_dssp TCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCc
Confidence 34444444443321000 1234555666666666666666654333333222 234
Q ss_pred CceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccc
Q 041683 269 YFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCW 348 (743)
Q Consensus 269 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 348 (743)
|++|++++|.+++. ....++..+..+++|++|++++|.+....+..+
T Consensus 144 L~~L~L~~n~l~~~---------------------------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 190 (461)
T 1z7x_W 144 LEKLQLEYCSLSAA---------------------------------SCEPLASVLRAKPDFKELTVSNNDINEAGVRVL 190 (461)
T ss_dssp CCEEECTTSCCBGG---------------------------------GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred ceEEECCCCCCCHH---------------------------------HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence 55555555554321 111112222235678888888887765433333
Q ss_pred c-----CCCCCCEEECCCCcCccc----CCccccCCCCCcEEEccCccccccC-----CcccCCCCCCCEEeCCCCcCcc
Q 041683 349 M-----NWLRLRALNLGHNNFTGS----LPMSIGTLSSLLSLNLRNNILSGII-----PTSFKNFSSLEVLDLGENELVG 414 (743)
Q Consensus 349 ~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~ 414 (743)
. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++
T Consensus 191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 2 356888888888888753 4566677888888888888876532 2233457888888888888874
Q ss_pred c----CchhHHhcccCCcEEEccCCcCcccCCccccC-----CCCccEEEccCCcccccc----CccccccccccccCcc
Q 041683 415 S----IPSWIGERFSILKILNLRSNKFHGDFPIQLCG-----LAFLQILDVASNSLSGTI----PRCINNLSAMAITDSY 481 (743)
Q Consensus 415 ~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~~~~~ 481 (743)
. ++..+. .+++|++|++++|.+.+..+..+.. .++|+.|++++|.+++.. +..+..
T Consensus 271 ~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~---------- 339 (461)
T 1z7x_W 271 KGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ---------- 339 (461)
T ss_dssp HHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH----------
T ss_pred HHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh----------
Confidence 3 444443 5778888888888876443333322 257888888888776432 222222
Q ss_pred chhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcc-----cCCCCEEeCCCCcCc
Q 041683 482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTN-----LQGLQSLNLSHNLLT 556 (743)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~ 556 (743)
++.|++|++++|.+++..+..+.. .++|++|+|++|.++
T Consensus 340 ------------------------------------~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 340 ------------------------------------NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp ------------------------------------CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred ------------------------------------CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 233577888888777655544432 567888888888877
Q ss_pred c----cCCCCCCCCCCccEEECcCCcCCCCCCcccc-----CcCCCCeeeCcCCcccc
Q 041683 557 G----RIPDNIGVMRSIESLDLSANQLSGQIPQSMS-----NLSFLNHLNLSNNNLVG 605 (743)
Q Consensus 557 ~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~~ 605 (743)
+ .+|..+..+++|++|++++|++++.....+. ....|+.|++.++.+..
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 5 5666677777888888888877643211111 12356666666665543
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=8e-30 Score=265.52 Aligned_cols=199 Identities=20% Similarity=0.232 Sum_probs=140.9
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCcEEEccCcccc--ccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcE
Q 041683 352 LRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILS--GIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKI 429 (743)
Q Consensus 352 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~ 429 (743)
++|++|++++|++.+..+..|..+++|++|++++|.++ +..+..+..+ +|++|++++|.+. .+|..+ .++|++
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~ 197 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNE 197 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCE
Confidence 45555555555555444444555556666666666554 2445555555 6777777777766 455443 256777
Q ss_pred EEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeec
Q 041683 430 LNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKG 509 (743)
Q Consensus 430 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (743)
|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..++.
T Consensus 198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~----------------------------------- 242 (332)
T 2ft3_A 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT----------------------------------- 242 (332)
T ss_dssp CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT-----------------------------------
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC-----------------------------------
Confidence 888888877766677888888888888888887766666665554
Q ss_pred eeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCC------CCCccEEECcCCcCC--C
Q 041683 510 VLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV------MRSIESLDLSANQLS--G 581 (743)
Q Consensus 510 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~--~ 581 (743)
|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. ..+|+.|++++|++. +
T Consensus 243 -----------L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 243 -----------LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp -----------CCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred -----------CCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 488888888888 67777888999999999999999777776655 367899999999987 6
Q ss_pred CCCccccCcCCCCeeeCcCCc
Q 041683 582 QIPQSMSNLSFLNHLNLSNNN 602 (743)
Q Consensus 582 ~~p~~l~~l~~L~~L~ls~N~ 602 (743)
..|..|..+++|+.+++++|+
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 778889999999999999885
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.4e-29 Score=263.56 Aligned_cols=200 Identities=20% Similarity=0.255 Sum_probs=121.9
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccc--cCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcE
Q 041683 352 LRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSG--IIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKI 429 (743)
Q Consensus 352 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~ 429 (743)
++|++|++++|.+++..+..|.++++|++|++++|.+.. ..+..+..+++|++|++++|.+. .+|..+ .++|++
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~ 196 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTE 196 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCE
Confidence 344444444444444434444445555555555554432 34445555566666666666655 444432 256666
Q ss_pred EEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeec
Q 041683 430 LNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKG 509 (743)
Q Consensus 430 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (743)
|++++|++.+..+..+..+++|+.|++++|++.+..+..+..++.
T Consensus 197 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~----------------------------------- 241 (330)
T 1xku_A 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH----------------------------------- 241 (330)
T ss_dssp EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT-----------------------------------
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC-----------------------------------
Confidence 666666666666666667777777777777776555555544444
Q ss_pred eeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCC------CCCccEEECcCCcCCC--
Q 041683 510 VLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV------MRSIESLDLSANQLSG-- 581 (743)
Q Consensus 510 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~-- 581 (743)
|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .++|+.|++++|.+..
T Consensus 242 -----------L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 242 -----------LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp -----------CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred -----------CCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 367777777776 56667777788888888888887666665643 3677888888888763
Q ss_pred CCCccccCcCCCCeeeCcCCc
Q 041683 582 QIPQSMSNLSFLNHLNLSNNN 602 (743)
Q Consensus 582 ~~p~~l~~l~~L~~L~ls~N~ 602 (743)
..|..|..+..++.+++++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 456677778888888888774
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.1e-29 Score=262.40 Aligned_cols=218 Identities=18% Similarity=0.215 Sum_probs=127.2
Q ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEE
Q 041683 19 SLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFS 98 (743)
Q Consensus 19 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~ 98 (743)
++++++++++.+..+ |..+ .++|++|++++|.++ .++...|.++++|++|+++ ++.+++..|.+|.++++|++|+
T Consensus 34 ~l~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-PKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLV-NNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC-SSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcccc-CCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECC-CCccCccCHhHhhCcCCCCEEE
Confidence 577777777777543 3333 257777777777777 3433367777777777777 5566666677777777777777
Q ss_pred ccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCcc--ccchhccCCCCCCEEEc
Q 041683 99 MRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDG--SIPFSLGQISNLEYLDL 176 (743)
Q Consensus 99 L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L 176 (743)
+++|.++. +|..+. + +|++|++++|.+....+..|..+++|++|++++|.++. ..+..+..+ +|++|++
T Consensus 109 L~~n~l~~-l~~~~~--~-----~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 109 ISKNHLVE-IPPNLP--S-----SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CCSSCCCS-CCSSCC--T-----TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred CCCCcCCc-cCcccc--c-----cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 77777653 333222 2 67777777777766655666677777777777776642 445556555 6666677
Q ss_pred cCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCC
Q 041683 177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRI 254 (743)
Q Consensus 177 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 254 (743)
++|+++ .+|.. + .++|++|++++|.+....+..+..+++|+.|++++|.+.+..+.++..+++|++|++++|.+
T Consensus 180 ~~n~l~-~l~~~-~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 180 SEAKLT-GIPKD-L--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp CSSBCS-SCCSS-S--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred cCCCCC-ccCcc-c--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 666665 34431 1 14555555555555444434444444444444444444433333344444444444444443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.3e-29 Score=259.16 Aligned_cols=197 Identities=19% Similarity=0.273 Sum_probs=124.8
Q ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEE
Q 041683 19 SLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFS 98 (743)
Q Consensus 19 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~ 98 (743)
++++++++++.+..+ |..+. ++|++|++++|.++ .++...|.++++|++|+++ ++.+.+..|.+|.++++|++|+
T Consensus 32 ~l~~l~~~~~~l~~l-p~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV-PKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSC-CCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCcccc-CccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECC-CCcCCeeCHHHhcCCCCCCEEE
Confidence 677778877777543 33332 57777888888777 4444367777778888887 5567666677777777777777
Q ss_pred ccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCcc--ccchhccCCCCCCEEEc
Q 041683 99 MRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDG--SIPFSLGQISNLEYLDL 176 (743)
Q Consensus 99 L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L 176 (743)
+++|.++. +|..+. + +|++|++++|.+.+..+..+.++++|++|++++|.++. ..+..|.++++|++|++
T Consensus 107 Ls~n~l~~-l~~~~~--~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 107 LSKNQLKE-LPEKMP--K-----TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CCSSCCSB-CCSSCC--T-----TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCCCcCCc-cChhhc--c-----cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 77777653 332221 2 67777777777766666666777777777777776643 44556666666677766
Q ss_pred cCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCcc
Q 041683 177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISA 256 (743)
Q Consensus 177 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 256 (743)
++|.++ .++... .++|++| ++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 179 ~~n~l~-~l~~~~---~~~L~~L------------------------~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 179 ADTNIT-TIPQGL---PPSLTEL------------------------HLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp CSSCCC-SCCSSC---CTTCSEE------------------------ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCCccc-cCCccc---cccCCEE------------------------ECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 666665 344311 1444444 444555444445556666666666666666654
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5e-30 Score=289.94 Aligned_cols=236 Identities=11% Similarity=-0.000 Sum_probs=123.6
Q ss_pred CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCC-ccccCCCCCcEEEccCccccccCCcccCCCCCCCEE
Q 041683 327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLP-MSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVL 405 (743)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 405 (743)
+++|+.|+++++... .+|..+..+++|++|++++|.+++... ..+..+++|++|+++++......+..+..+++|++|
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 455666666654322 344555566666666666666543222 224556667777666332222222333456667777
Q ss_pred eCCC-----------CcCcccCchhHHhcccCCcEEEccCCcCcccCCccccC-CCCccEEEcc----CCccccccCc-c
Q 041683 406 DLGE-----------NELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCG-LAFLQILDVA----SNSLSGTIPR-C 468 (743)
Q Consensus 406 ~Ls~-----------n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls----~N~l~~~~p~-~ 468 (743)
++++ |.+++.....+...+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++...+ .
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 7762 44443322333335666777777666666544444443 6667777775 3444421100 0
Q ss_pred ccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCc--CcccCchhhc-ccCCC
Q 041683 469 INNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNI--FSGEIPVEVT-NLQGL 545 (743)
Q Consensus 469 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L 545 (743)
+.. ....+++|+.|++++|. +++..+..+. .+++|
T Consensus 428 ~~~------------------------------------------~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L 465 (592)
T 3ogk_B 428 VRS------------------------------------------LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465 (592)
T ss_dssp HHH------------------------------------------HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred HHH------------------------------------------HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence 000 01113345666665433 4544444443 36667
Q ss_pred CEEeCCCCcCcc-cCCCCCCCCCCccEEECcCCcCCCC-CCccccCcCCCCeeeCcCCcccc
Q 041683 546 QSLNLSHNLLTG-RIPDNIGVMRSIESLDLSANQLSGQ-IPQSMSNLSFLNHLNLSNNNLVG 605 (743)
Q Consensus 546 ~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~~ 605 (743)
++|+|++|++++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++.
T Consensus 466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 777777776664 2333345566777777777776533 23333456677777777776654
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.4e-27 Score=259.51 Aligned_cols=234 Identities=25% Similarity=0.264 Sum_probs=210.2
Q ss_pred CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683 327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD 406 (743)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 406 (743)
.+++++|++++|++.+..+..|..+++|++|+|++|.+++..+..|.++++|++|++++|.++.+.+..|..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 36899999999999998899999999999999999999988889999999999999999999988888899999999999
Q ss_pred CCCCcCcccCchhHHhcccCCcEEEccCC-cCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhh
Q 041683 407 LGENELVGSIPSWIGERFSILKILNLRSN-KFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAV 485 (743)
Q Consensus 407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 485 (743)
+++|++. .++...+..+++|++|++++| .+....+..|.++++|++|++++|++.+. | .+..
T Consensus 154 L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~-------------- 216 (452)
T 3zyi_A 154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTP-------------- 216 (452)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTT--------------
T ss_pred CCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccc--------------
Confidence 9999998 667666668999999999995 55544455799999999999999999843 3 2333
Q ss_pred hhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCC
Q 041683 486 ILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV 565 (743)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 565 (743)
+++|++|++++|++++..|..|.++++|+.|+|++|++++..|..|..
T Consensus 217 --------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 217 --------------------------------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp --------------------------------CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred --------------------------------cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence 334699999999999999999999999999999999999999999999
Q ss_pred CCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683 566 MRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS 609 (743)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 609 (743)
+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.+.-
T Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99999999999999988888899999999999999999987653
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=5.3e-28 Score=248.80 Aligned_cols=236 Identities=23% Similarity=0.244 Sum_probs=206.8
Q ss_pred CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCccc--CCccccCCCCCcEEEccCccccccCCcccCCCCCCCE
Q 041683 327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGS--LPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV 404 (743)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 404 (743)
.+++++|++++|++....+..|..+++|++|++++|.++.. .+..+..+++|++|++++|.+.. .|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCE
Confidence 36899999999999976667789999999999999999843 35677789999999999999985 5667899999999
Q ss_pred EeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccc-ccCccccccccccccCccch
Q 041683 405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG-TIPRCINNLSAMAITDSYDQ 483 (743)
Q Consensus 405 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~ 483 (743)
|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..++.
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~--------- 176 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN--------- 176 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT---------
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC---------
Confidence 99999999843332344578999999999999998888889999999999999999986 56777766655
Q ss_pred hhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCC
Q 041683 484 AVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNI 563 (743)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 563 (743)
|++|++++|++++..|..+..+++|++|+|++|++++..+..+
T Consensus 177 -------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 177 -------------------------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp -------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred -------------------------------------CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 5999999999999889999999999999999999998777789
Q ss_pred CCCCCccEEECcCCcCCCCCCccccCc-CCCCeeeCcCCcccccCCC
Q 041683 564 GVMRSIESLDLSANQLSGQIPQSMSNL-SFLNHLNLSNNNLVGKIPS 609 (743)
Q Consensus 564 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~ 609 (743)
..+++|+.|++++|++++..|..+..+ ++|++|++++|+++|.++.
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 999999999999999999999999988 4999999999999987653
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=257.19 Aligned_cols=234 Identities=24% Similarity=0.252 Sum_probs=209.4
Q ss_pred CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683 327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD 406 (743)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 406 (743)
.++++.|++++|++.+..+..|..+++|++|+|++|.+++..+..|.++++|++|++++|.++.+.+..|..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 36799999999999988889999999999999999999988888999999999999999999988888899999999999
Q ss_pred CCCCcCcccCchhHHhcccCCcEEEccCC-cCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhh
Q 041683 407 LGENELVGSIPSWIGERFSILKILNLRSN-KFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAV 485 (743)
Q Consensus 407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 485 (743)
+++|.+. .++...+..+++|++|++++| .+....+..|.++++|++|++++|.+. .+|. +..
T Consensus 143 L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~-------------- 205 (440)
T 3zyj_A 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP-------------- 205 (440)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTT--------------
T ss_pred CCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCC--------------
Confidence 9999998 666656668999999999995 455445557999999999999999998 3342 333
Q ss_pred hhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCC
Q 041683 486 ILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV 565 (743)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 565 (743)
+++|++|++++|++++..|..|.++++|++|+|++|++++..+..|..
T Consensus 206 --------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 206 --------------------------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp --------------------------------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred --------------------------------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 334699999999999999999999999999999999999999999999
Q ss_pred CCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683 566 MRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS 609 (743)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 609 (743)
+++|+.|+|++|++++..+..|..+++|+.|+|++|++.|.+.-
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99999999999999988888899999999999999999987653
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.4e-29 Score=286.28 Aligned_cols=204 Identities=12% Similarity=0.012 Sum_probs=114.3
Q ss_pred CCCccEEECcCCcCc-ccCCccccCCCCCCEEECCC-----------CcCccc-CCccccCCCCCcEEEccCccccccCC
Q 041683 327 SNNIEFLKLSKNNFS-GDIPDCWMNWLRLRALNLGH-----------NNFTGS-LPMSIGTLSSLLSLNLRNNILSGIIP 393 (743)
Q Consensus 327 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~-----------n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~ 393 (743)
+++|++|+++ +.+. ..++..+..+++|++|++++ |.+++. .+.....+++|++|+++.|.+++..+
T Consensus 317 ~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~ 395 (592)
T 3ogk_B 317 CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395 (592)
T ss_dssp CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence 4556666665 2222 22223334556666666662 344422 11123346677777776666665444
Q ss_pred cccCC-CCCCCEEeCC----CCcCccc-----CchhHHhcccCCcEEEccCCc--CcccCCccc-cCCCCccEEEccCCc
Q 041683 394 TSFKN-FSSLEVLDLG----ENELVGS-----IPSWIGERFSILKILNLRSNK--FHGDFPIQL-CGLAFLQILDVASNS 460 (743)
Q Consensus 394 ~~~~~-l~~L~~L~Ls----~n~i~~~-----~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~-~~l~~L~~L~Ls~N~ 460 (743)
..+.. +++|+.|+++ .|.+++. ++. +...+++|++|++++|. +++.....+ ..+++|++|++++|+
T Consensus 396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 44443 6677777775 4555532 222 23357777777776543 443333333 236778888888777
Q ss_pred cccc-cCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCccc-Cchh
Q 041683 461 LSGT-IPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGE-IPVE 538 (743)
Q Consensus 461 l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~ 538 (743)
+++. ++..+.. +++|++|++++|.+++. ++..
T Consensus 475 l~~~~~~~~~~~----------------------------------------------~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 475 ESDEGLMEFSRG----------------------------------------------CPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp SSHHHHHHHHTC----------------------------------------------CTTCCEEEEESCCCBHHHHHHH
T ss_pred CCHHHHHHHHhc----------------------------------------------CcccCeeeccCCCCcHHHHHHH
Confidence 6642 2222222 23357888888887654 3344
Q ss_pred hcccCCCCEEeCCCCcCcccCCCCC-CCCCCccEEECcCCc
Q 041683 539 VTNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQ 578 (743)
Q Consensus 539 ~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~ 578 (743)
+..+++|++|+|++|++++.....+ ..++.+....+..++
T Consensus 509 ~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~ 549 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC-
T ss_pred HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCcc
Confidence 5678899999999999875533333 346767666666553
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=7.7e-28 Score=244.75 Aligned_cols=244 Identities=21% Similarity=0.185 Sum_probs=180.1
Q ss_pred cEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCC
Q 041683 331 EFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN 410 (743)
Q Consensus 331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n 410 (743)
+.++.+++.+.. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|.++++.+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 567777777763 34322 357778888888777666667777778888888888777777777777888888888888
Q ss_pred c-CcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhc
Q 041683 411 E-LVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYS 489 (743)
Q Consensus 411 ~-i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~ 489 (743)
. +. .++...+..+++|++|++++|.+.+..+..+.++++|++|++++|++.+..+..+..++.
T Consensus 91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--------------- 154 (285)
T 1ozn_A 91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN--------------- 154 (285)
T ss_dssp TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---------------
T ss_pred CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC---------------
Confidence 6 55 443333346778888888888887766777778888888888888887655555555554
Q ss_pred cccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCc
Q 041683 490 SLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSI 569 (743)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 569 (743)
|++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|
T Consensus 155 -------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 203 (285)
T 1ozn_A 155 -------------------------------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203 (285)
T ss_dssp -------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred -------------------------------ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence 4788888888887666678888899999999999888888888888999
Q ss_pred cEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC
Q 041683 570 ESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN 624 (743)
Q Consensus 570 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n 624 (743)
+.|++++|++++..+..+..+++|+.|++++|++.+.++.......++......+
T Consensus 204 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~ 258 (285)
T 1ozn_A 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 258 (285)
T ss_dssp CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEEC
T ss_pred cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccC
Confidence 9999999999877667788888999999999998887765433333333333333
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.8e-28 Score=254.41 Aligned_cols=259 Identities=20% Similarity=0.216 Sum_probs=151.0
Q ss_pred CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683 328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL 407 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 407 (743)
++|++|++++|++.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 35666666666666555555666666666666666666555555666666666666666666544444566666666666
Q ss_pred CCCcCcccCch-hHHhcccCCcEEEccCC-cCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhh
Q 041683 408 GENELVGSIPS-WIGERFSILKILNLRSN-KFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAV 485 (743)
Q Consensus 408 s~n~i~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 485 (743)
++|++. .+|. ..+..+++|++|++++| .+.+..+..|.++++|++|++++|++.+..|..+..++.|+..+.....
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~- 209 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ- 209 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-
Confidence 666665 4443 23334566666666665 3444444556666666666666666665555555554443211000000
Q ss_pred hhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhh---cccCCCCEEeCCCCcCcc----c
Q 041683 486 ILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV---TNLQGLQSLNLSHNLLTG----R 558 (743)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~----~ 558 (743)
...........++.|+.|++++|++++..+..+ ...+.++.++|+++.+++ .
T Consensus 210 ---------------------l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 210 ---------------------HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ---------------------STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred ---------------------cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 000000011124456777777777776544333 234566777777777664 3
Q ss_pred CCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683 559 IPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS 609 (743)
Q Consensus 559 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 609 (743)
+|+.+..+++|++|++++|+++...+..|..+++|++|++++|+++|.+|.
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 566677888888999999988844334468888888999999988888774
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=6.5e-28 Score=253.36 Aligned_cols=271 Identities=19% Similarity=0.213 Sum_probs=227.5
Q ss_pred CCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCC
Q 041683 2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELG 81 (743)
Q Consensus 2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~ 81 (743)
++|+++ .+|..+. ++|++|++++|+++++.+..|.++++|++|++++|.+++..+. .|.++++|++|+++ +|.++
T Consensus 39 ~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls-~n~l~ 113 (353)
T 2z80_A 39 SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLS-YNYLS 113 (353)
T ss_dssp CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECC-SSCCS
T ss_pred CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECC-CCcCC
Confidence 567777 4566554 5899999999999988888999999999999999999854444 89999999999999 77787
Q ss_pred cccchhccCCCCCCEEEccCCcCcccch-hhhhcccccccCCccEEEccCC-cCcccchhhccCCCCCCEEECcCccCcc
Q 041683 82 GKIPTSFGKLCKLTSFSMRFTKLSQDIS-EILGIFSACVANELESLRLGSS-QIFGHLTNQLRRFKRLNSLDLSNTILDG 159 (743)
Q Consensus 82 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~~~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 159 (743)
+..+..+.++++|++|++++|.+....+ ..+..++ +|++|++++| .+....+..+..+++|++|++++|.+++
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~-----~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT-----KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT-----TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC-----CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 7666679999999999999999886433 3566676 9999999999 4666677889999999999999999998
Q ss_pred ccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCC---CCccccEEEcCCCcCCC----
Q 041683 160 SIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWV---PPFQLTVLELRSCHLGP---- 232 (743)
Q Consensus 160 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l~~n~l~~---- 232 (743)
..|..+.++++|++|++++|++. .++...+..+++|++|++++|.+.+.....+. ....++.++++++.+.+
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 88999999999999999999997 66665677899999999999998765544332 34568888999888865
Q ss_pred CcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCC
Q 041683 233 RFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIP 284 (743)
Q Consensus 233 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 284 (743)
.+|.++..+++|+.|++++|+++ .+|..++..+++|++|++++|++.+..|
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 36778899999999999999997 6888877888999999999999886544
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.8e-27 Score=246.39 Aligned_cols=227 Identities=18% Similarity=0.246 Sum_probs=180.0
Q ss_pred CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683 327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD 406 (743)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 406 (743)
.+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 367899999999998 66777888999999999999998 78888889999999999999988 6678888999999999
Q ss_pred CCCCcCcccCchhHH--------hcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCcccccccccccc
Q 041683 407 LGENELVGSIPSWIG--------ERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAIT 478 (743)
Q Consensus 407 Ls~n~i~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~ 478 (743)
+++|.+.+.+|..+. ..+++|++|++++|+++ .+|..+..+++|++|++++|++.+ +|..+..++.
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~---- 230 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK---- 230 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTT----
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCC----
Confidence 999888778887653 13777888888888877 667777778888888888888774 4444554444
Q ss_pred CccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCccc
Q 041683 479 DSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGR 558 (743)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 558 (743)
|++|++++|.+.+.+|..+.++++|++|+|++|.+.+.
T Consensus 231 ------------------------------------------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 231 ------------------------------------------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp ------------------------------------------CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred ------------------------------------------CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence 47788888777777777777788888888888777777
Q ss_pred CCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCccc
Q 041683 559 IPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLV 604 (743)
Q Consensus 559 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 604 (743)
+|..+..+++|+.|++++|++.+.+|+.+..+++|+.+++..|.+.
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 7777777888888888888877778887888888888877766553
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.5e-27 Score=240.65 Aligned_cols=271 Identities=21% Similarity=0.225 Sum_probs=209.4
Q ss_pred CCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccc--cCcccccCCCCCCEEEcCCCCc
Q 041683 2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGN--VSSLGLENLTSIKRLYLSENDE 79 (743)
Q Consensus 2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~~L~Ls~~~~ 79 (743)
++++++ .+|..+. ++|++|+|++|++..+.+..|.++++|++|+|++|.++.. .+. .+..+++|++|+++ ++.
T Consensus 15 ~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~Ls-~n~ 89 (306)
T 2z66_A 15 NSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ-SDFGTTSLKYLDLS-FNG 89 (306)
T ss_dssp CSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH-HHHSCSCCCEEECC-SCS
T ss_pred CCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc-ccccccccCEEECC-CCc
Confidence 456666 4555443 6899999999999877777789999999999999988722 234 56788999999999 556
Q ss_pred CCcccchhccCCCCCCEEEccCCcCcccch-hhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCc
Q 041683 80 LGGKIPTSFGKLCKLTSFSMRFTKLSQDIS-EILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILD 158 (743)
Q Consensus 80 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 158 (743)
+. .+|..+.++++|++|++++|.+....+ ..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-----NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT-----TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhcc-----CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 65 467778889999999999998876544 4566666 8999999999998888888889999999999999988
Q ss_pred c-ccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchh
Q 041683 159 G-SIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLW 237 (743)
Q Consensus 159 ~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 237 (743)
+ ..|..+..+++|++|++++|++++..+. .+..+++|++|++++|.+....+..+..+++|+.|++++|++.+..+..
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 6 5778888899999999999998854444 6888899999999999988776667788888999999999988888888
Q ss_pred hcCCC-CCCEEEccCCCCccccC-hhhhhhcccCceEecccCccccCCC
Q 041683 238 LQSQR-ELNDLDISSTRISAKIP-RGFWNSIYQYFYLNISGNQIYGGIP 284 (743)
Q Consensus 238 l~~l~-~L~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~ 284 (743)
+..++ +|+.|++++|.++...+ .++...+...+.+....+.+....|
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred HHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 88874 89999999998875433 2333334444445555555444333
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.7e-27 Score=239.75 Aligned_cols=236 Identities=19% Similarity=0.212 Sum_probs=206.6
Q ss_pred CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCcc-ccccCCcccCCCCCCCEE
Q 041683 327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNI-LSGIIPTSFKNFSSLEVL 405 (743)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L 405 (743)
.+++++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. +....+..|..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4689999999999998888889999999999999999998889999999999999999997 887778899999999999
Q ss_pred eCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhh
Q 041683 406 DLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAV 485 (743)
Q Consensus 406 ~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 485 (743)
++++|.+.+..+..+ ..+++|++|++++|++.+..+..|..+++|++|++++|++.+..+..+..++.
T Consensus 111 ~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------- 178 (285)
T 1ozn_A 111 HLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS----------- 178 (285)
T ss_dssp ECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-----------
T ss_pred ECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc-----------
Confidence 999999985445444 47999999999999999777778999999999999999998766666766655
Q ss_pred hhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCC
Q 041683 486 ILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV 565 (743)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 565 (743)
|+.|++++|++++..|..|.++++|++|++++|++++..++.+..
T Consensus 179 -----------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 179 -----------------------------------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp -----------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred -----------------------------------cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence 599999999999999999999999999999999999777777999
Q ss_pred CCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683 566 MRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS 610 (743)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 610 (743)
+++|+.|++++|++....+.. .-...++.+..+.+.+.|..|..
T Consensus 224 l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred CcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 999999999999998654421 22345667778899999999874
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.3e-26 Score=239.95 Aligned_cols=223 Identities=22% Similarity=0.296 Sum_probs=199.0
Q ss_pred CCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcE
Q 041683 350 NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKI 429 (743)
Q Consensus 350 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~ 429 (743)
..++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+. .+++|++
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCE
Confidence 3478999999999999 77888888999999999999999 78889999999999999999998 8898776 7999999
Q ss_pred EEccCCcCcccCCccccC---------CCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccc
Q 041683 430 LNLRSNKFHGDFPIQLCG---------LAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIF 500 (743)
Q Consensus 430 L~L~~n~l~~~~~~~~~~---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (743)
|++++|++.+.+|..+.. +++|++|++++|++. .+|..+..++.
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~-------------------------- 207 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN-------------------------- 207 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTT--------------------------
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCC--------------------------
Confidence 999999988888887654 999999999999998 77877776665
Q ss_pred cccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCC
Q 041683 501 EDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLS 580 (743)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (743)
|++|++++|++++ +|..+..+++|++|+|++|.+.+.+|..++.+++|+.|++++|++.
T Consensus 208 --------------------L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 208 --------------------LKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp --------------------CCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred --------------------CCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence 4999999999995 6667999999999999999999999999999999999999999999
Q ss_pred CCCCccccCcCCCCeeeCcCCcccccCCCC-cccCCCCCccccCC
Q 041683 581 GQIPQSMSNLSFLNHLNLSNNNLVGKIPSS-TQLQSFGASSFAGN 624 (743)
Q Consensus 581 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n 624 (743)
+.+|..+..+++|++|+|++|++.+.+|.. ..+..+..+.+..+
T Consensus 267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 999999999999999999999999999976 45555555544433
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=8.5e-28 Score=248.07 Aligned_cols=249 Identities=21% Similarity=0.222 Sum_probs=201.7
Q ss_pred CCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEE
Q 041683 326 FSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVL 405 (743)
Q Consensus 326 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 405 (743)
.+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 36789999999999998878899999999999999999986654 889999999999999998643 34899999
Q ss_pred eCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCcccc-ccccccccCccchh
Q 041683 406 DLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCIN-NLSAMAITDSYDQA 484 (743)
Q Consensus 406 ~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~~~~~~~~ 484 (743)
++++|.+.+ ++.. .+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+. .++.
T Consensus 105 ~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~---------- 170 (317)
T 3o53_A 105 HAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT---------- 170 (317)
T ss_dssp ECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT----------
T ss_pred ECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc----------
Confidence 999999984 4432 478899999999999988888899999999999999999876665542 3333
Q ss_pred hhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCC
Q 041683 485 VILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIG 564 (743)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 564 (743)
|++|++++|.+++. + ....+++|++|+|++|++++ +|..+.
T Consensus 171 ------------------------------------L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~ 211 (317)
T 3o53_A 171 ------------------------------------LEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQ 211 (317)
T ss_dssp ------------------------------------CCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGG
T ss_pred ------------------------------------CCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhc
Confidence 69999999999865 3 23458999999999999995 555599
Q ss_pred CCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCccc-ccCCCC-cccCCCCCccccCC-CCCCCCCCCCC
Q 041683 565 VMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLV-GKIPSS-TQLQSFGASSFAGN-DLCGDPLSNCT 635 (743)
Q Consensus 565 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~~p~~-~~~~~l~~~~~~~n-~l~~~~~~~c~ 635 (743)
.+++|+.|++++|+++ .+|..+..+++|+.|++++|+++ +.+|.. ..+..+..+++.++ .+.|.+...|.
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~ 284 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCS
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccC
Confidence 9999999999999999 56778999999999999999999 434432 23444555555655 55555444453
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.2e-25 Score=241.34 Aligned_cols=247 Identities=17% Similarity=0.212 Sum_probs=144.0
Q ss_pred CCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEc
Q 041683 20 LKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSM 99 (743)
Q Consensus 20 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L 99 (743)
.+.++.++.+++.+ |..+. +++++|+|++|.++ .++...|.++++|++|+|+ ++.+.+..+.+|.++++|++|++
T Consensus 45 ~~~v~c~~~~l~~i-P~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLREV-PDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLS-RNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCSSC-CSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECC-SSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcCcC-CCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECC-CCcCCccChhhccCCccCCEEEC
Confidence 34555555555433 22222 45666666666665 3332256666666666666 44555555555666666666666
Q ss_pred cCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcC-ccCccccchhccCCCCCCEEEccC
Q 041683 100 RFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSN-TILDGSIPFSLGQISNLEYLDLSN 178 (743)
Q Consensus 100 ~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~ 178 (743)
++|+++...+..+..++ +|++|++++|.+....+..|..+++|++|++++ +.+....+..|.++++|++|++++
T Consensus 120 ~~n~l~~~~~~~~~~l~-----~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLS-----KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp CSSCCSSCCTTTSCSCS-----SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CCCcCCeeCHhHhhccc-----cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 66665554444455544 666666666666555555566666666666665 333333334566666666666666
Q ss_pred CCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCcccc
Q 041683 179 NKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKI 258 (743)
Q Consensus 179 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 258 (743)
|+++ .++. +..+++|++|++++|.+....+..|..+++|+.|++++|++....+..|..+++|+.|++++|+++ .+
T Consensus 195 n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~ 270 (440)
T 3zyj_A 195 CNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LL 270 (440)
T ss_dssp SCCS-SCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CC
T ss_pred CcCc-cccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-cc
Confidence 6665 4443 556666666666666666666666666666666666666666666666666666666666666665 34
Q ss_pred ChhhhhhcccCceEecccCccc
Q 041683 259 PRGFWNSIYQYFYLNISGNQIY 280 (743)
Q Consensus 259 ~~~~~~~l~~L~~L~l~~n~l~ 280 (743)
+...+..+++|+.|++++|++.
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSCEE
T ss_pred ChhHhccccCCCEEEcCCCCcc
Confidence 4444455666666666666654
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.4e-25 Score=241.93 Aligned_cols=227 Identities=19% Similarity=0.191 Sum_probs=116.2
Q ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEE
Q 041683 18 TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSF 97 (743)
Q Consensus 18 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L 97 (743)
+++++|+|++|++.++.+..|.++++|++|+|++|.+++ ++...|.++++|++|+|+ +|.+++..+..|.++++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELF-DNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECC-SSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECC-CCcCCccChhhhcccCCCCEE
Confidence 355555555555555555555555555555555555552 222255555555555555 444544444455555555555
Q ss_pred EccCCcCcccchhhhhcccccccCCccEEEccCC-cCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEc
Q 041683 98 SMRFTKLSQDISEILGIFSACVANELESLRLGSS-QIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDL 176 (743)
Q Consensus 98 ~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 176 (743)
++++|.+....+..+..++ +|++|++++| .+....+..|..+++|++|++++|.+++. | .+..+++|++|++
T Consensus 153 ~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVP-----SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEM 225 (452)
T ss_dssp ECCSCCCCEECTTTTTTCT-----TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEEC
T ss_pred ECCCCCcceeCHhHHhcCC-----cccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEEC
Confidence 5555555543334444444 5555555552 22222233455555555555555555532 2 3445555555555
Q ss_pred cCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCC
Q 041683 177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRI 254 (743)
Q Consensus 177 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 254 (743)
++|++++..+ ..|.++++|++|++++|.+....+..|..+++|+.|++++|++....+..+..+++|+.|++++|.+
T Consensus 226 s~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 226 SGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTSCCSEECG-GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCCcCcccCc-ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 5555552222 2455555555555555555555444555555555555555555544444444455555555555544
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.7e-25 Score=223.05 Aligned_cols=212 Identities=21% Similarity=0.219 Sum_probs=147.6
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEE
Q 041683 352 LRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILN 431 (743)
Q Consensus 352 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ 431 (743)
++|++|++++|.+++..+..|..+++|++|++++|.++++.+..|..+++|++|++++|.+.+..+..+ ..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh-cCCccccEEE
Confidence 356666666666665555556666666666666666665555566666666666666666653322322 3566666666
Q ss_pred ccCCcCcccCCccccCCCCccEEEccCCccccc-cCccccccccccccCccchhhhhhccccCCCCcccccccceeeece
Q 041683 432 LRSNKFHGDFPIQLCGLAFLQILDVASNSLSGT-IPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGV 510 (743)
Q Consensus 432 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (743)
+++|.+.+..+..+..+++|++|++++|.+.+. +|..+.+++.
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~------------------------------------ 150 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN------------------------------------ 150 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT------------------------------------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC------------------------------------
Confidence 666666655555566777777777777777653 4555555544
Q ss_pred eeehhcccccccEEEccCCcCcccCchhhcccCCCC----EEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCcc
Q 041683 511 LVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQ----SLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQS 586 (743)
Q Consensus 511 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 586 (743)
|++|++++|++++..+..+..+++|+ +|++++|.+++..+..+. ..+|+.|++++|++++..+..
T Consensus 151 ----------L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~ 219 (276)
T 2z62_A 151 ----------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGI 219 (276)
T ss_dssp ----------CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTT
T ss_pred ----------CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhH
Confidence 37777777777776666777777776 899999999966666554 458999999999999877777
Q ss_pred ccCcCCCCeeeCcCCcccccCCCCc
Q 041683 587 MSNLSFLNHLNLSNNNLVGKIPSST 611 (743)
Q Consensus 587 l~~l~~L~~L~ls~N~l~~~~p~~~ 611 (743)
+..+++|+.|++++|+++|.+|...
T Consensus 220 ~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 220 FDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp TTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred hcccccccEEEccCCcccccCCchH
Confidence 8999999999999999999988653
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=239.05 Aligned_cols=244 Identities=20% Similarity=0.212 Sum_probs=150.1
Q ss_pred CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683 122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA 201 (743)
Q Consensus 122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 201 (743)
+|++|++++|.+.+..|..|..+++|++|++++|.+++..+ +..+++|++|++++|+++ .++ ..++|++|++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~L~~L~l 106 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHA 106 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTTCCEEEC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCCcCEEEC
Confidence 56666666666665555666666666666666666654433 566666666666666655 222 2356666666
Q ss_pred CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcccc
Q 041683 202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYG 281 (743)
Q Consensus 202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~ 281 (743)
++|.+....+.. +++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+...
T Consensus 107 ~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---------------- 167 (317)
T 3o53_A 107 ANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS---------------- 167 (317)
T ss_dssp CSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG----------------
T ss_pred CCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc----------------
Confidence 666655443332 2345555555555554444445555555555555555544333332222
Q ss_pred CCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCC
Q 041683 282 GIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH 361 (743)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 361 (743)
+++|++|++++|.+++.. ....+++|++|++++
T Consensus 168 ---------------------------------------------l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 168 ---------------------------------------------SDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSS 200 (317)
T ss_dssp ---------------------------------------------TTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCS
T ss_pred ---------------------------------------------cCcCCEEECCCCcCcccc--cccccccCCEEECCC
Confidence 345666666666666442 223477888888888
Q ss_pred CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCc-ccCchhHHhcccCCcEEEccCC-cCcc
Q 041683 362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV-GSIPSWIGERFSILKILNLRSN-KFHG 439 (743)
Q Consensus 362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~~l~~L~~L~L~~n-~l~~ 439 (743)
|++++. |..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++. +.++.++. .++.|+.++++++ .+.+
T Consensus 201 N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~-~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 201 NKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp SCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHH-TCHHHHHHHHHHHHHHHS
T ss_pred CcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHh-ccccceEEECCCchhccC
Confidence 888754 4457778888888888888884 4667888888999999999887 55555554 6888888888854 4444
Q ss_pred cCC
Q 041683 440 DFP 442 (743)
Q Consensus 440 ~~~ 442 (743)
..+
T Consensus 278 ~~~ 280 (317)
T 3o53_A 278 QNE 280 (317)
T ss_dssp SSS
T ss_pred Cch
Confidence 433
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=6.3e-27 Score=240.99 Aligned_cols=245 Identities=22% Similarity=0.281 Sum_probs=144.4
Q ss_pred CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCc-ccCCcccc-------CCCCCcEEEccCccccccCCccc--C
Q 041683 328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFT-GSLPMSIG-------TLSSLLSLNLRNNILSGIIPTSF--K 397 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~~--~ 397 (743)
++|++|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|.+++..|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4566666666666 444444332 666666666663 23343333 46677777777777766666554 6
Q ss_pred CCCCCCEEeCCCCcCcccCchhHHhcc-----cCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccccc--Cccc-
Q 041683 398 NFSSLEVLDLGENELVGSIPSWIGERF-----SILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTI--PRCI- 469 (743)
Q Consensus 398 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~- 469 (743)
.+++|++|++++|.+.+. |..+. .+ ++|++|++++|++.+..+..|..+++|++|++++|++.+.+ |..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred cCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 667777777777776643 54443 34 66777777777776666666677777777777777665431 1111
Q ss_pred -cccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcc---cCchhhcccCCC
Q 041683 470 -NNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG---EIPVEVTNLQGL 545 (743)
Q Consensus 470 -~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L 545 (743)
..+ +.|++|++++|++++ .....+..+++|
T Consensus 197 ~~~l----------------------------------------------~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 197 PLKF----------------------------------------------PTLQVLALRNAGMETPSGVCSALAAARVQL 230 (312)
T ss_dssp TTSC----------------------------------------------TTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred hccC----------------------------------------------CCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence 222 234666666666662 112233456666
Q ss_pred CEEeCCCCcCcccCC-CCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC
Q 041683 546 QSLNLSHNLLTGRIP-DNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN 624 (743)
Q Consensus 546 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n 624 (743)
++|+|++|++++.+| ..+..+++|++|++++|+++ .+|..+. ++|++||+++|++++. |....++.++.+++.+|
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGN 306 (312)
T ss_dssp SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTC
T ss_pred CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCC
Confidence 666666666665553 34455666666666666666 5555444 6666666666666655 44445555666666666
Q ss_pred CCCC
Q 041683 625 DLCG 628 (743)
Q Consensus 625 ~l~~ 628 (743)
.+.+
T Consensus 307 ~l~~ 310 (312)
T 1wwl_A 307 PFLD 310 (312)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 5543
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=4.2e-28 Score=274.36 Aligned_cols=228 Identities=14% Similarity=0.046 Sum_probs=111.8
Q ss_pred CCccEEECcCCcCcccC-CccccCCCCCCEEECCCCcCccc-CCccccCCCCCcEEEccC---------ccccccCCccc
Q 041683 328 NNIEFLKLSKNNFSGDI-PDCWMNWLRLRALNLGHNNFTGS-LPMSIGTLSSLLSLNLRN---------NILSGIIPTSF 396 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~i~~~~~~~~ 396 (743)
++|++|++++|.+.+.. ...+..+++|++|++++| +... ++.....+++|++|++.+ +.+++.....+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 44555555555543221 112334555555555555 2211 111122355566665532 23332211122
Q ss_pred -CCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEcc--C----CcCccc-----CCccccCCCCccEEEccCCccccc
Q 041683 397 -KNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLR--S----NKFHGD-----FPIQLCGLAFLQILDVASNSLSGT 464 (743)
Q Consensus 397 -~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~ 464 (743)
..+++|++|+++.|.+++.....+...+++|+.|+++ + +.++.. ++..+..+++|+.|++++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 2356666666666666544444444446667777766 2 333311 111244566677777755 34322
Q ss_pred cCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhh-cccC
Q 041683 465 IPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV-TNLQ 543 (743)
Q Consensus 465 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~ 543 (743)
.+..+.. .+++|+.|++++|.+++.....+ .+++
T Consensus 447 ~~~~l~~---------------------------------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 481 (594)
T 2p1m_B 447 VFEYIGT---------------------------------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCD 481 (594)
T ss_dssp HHHHHHH---------------------------------------------HCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred HHHHHHH---------------------------------------------hchhccEeeccCCCCcHHHHHHHHhcCC
Confidence 2222211 12335777777777665444444 5567
Q ss_pred CCCEEeCCCCcCcccCCC-CCCCCCCccEEECcCCcCCCCCCccc-cCcCCCCeeeCcCCc
Q 041683 544 GLQSLNLSHNLLTGRIPD-NIGVMRSIESLDLSANQLSGQIPQSM-SNLSFLNHLNLSNNN 602 (743)
Q Consensus 544 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~ 602 (743)
+|++|+|++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus 482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 777777777777543332 33446777777777777643322222 234555444444443
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=6.1e-27 Score=241.07 Aligned_cols=224 Identities=24% Similarity=0.299 Sum_probs=168.2
Q ss_pred ccEEECcCCcCc-ccCCcccc-------CCCCCCEEECCCCcCcccCCccc--cCCCCCcEEEccCccccccCCcccCCC
Q 041683 330 IEFLKLSKNNFS-GDIPDCWM-------NWLRLRALNLGHNNFTGSLPMSI--GTLSSLLSLNLRNNILSGIIPTSFKNF 399 (743)
Q Consensus 330 L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l 399 (743)
++.|++++|.+. ..++..+. .+++|++|++++|++++..|..+ ..+++|++|++++|.+++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 777788887774 33444443 57788888888888887777765 7788888888888888766 6666655
Q ss_pred -----CCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCccc--CCccc--cCCCCccEEEccCCccccc--cC-c
Q 041683 400 -----SSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGD--FPIQL--CGLAFLQILDVASNSLSGT--IP-R 467 (743)
Q Consensus 400 -----~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~Ls~N~l~~~--~p-~ 467 (743)
++|++|++++|++.+..|..+. .+++|++|++++|++.+. .+..+ ..+++|++|++++|++.+. ++ .
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 7888888888888744434443 678888888888887654 22233 7788889999998888731 11 1
Q ss_pred cccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCc-hhhcccCCCC
Q 041683 468 CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIP-VEVTNLQGLQ 546 (743)
Q Consensus 468 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~ 546 (743)
.+.. ++.|++|++++|++++..| ..+..+++|+
T Consensus 223 ~~~~----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 223 LAAA----------------------------------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp HHHT----------------------------------------------TCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred HHhc----------------------------------------------CCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 1122 3346889999999987765 4567789999
Q ss_pred EEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCccccc
Q 041683 547 SLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGK 606 (743)
Q Consensus 547 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 606 (743)
+|+|++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 9999999999 7888776 8999999999999976 66 88999999999999999863
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=3.7e-27 Score=266.58 Aligned_cols=157 Identities=15% Similarity=0.091 Sum_probs=85.9
Q ss_pred CCCCcEEEccCccccccCCcccC-CCCCCCEEeCC--C----CcCcccCch-----hHHhcccCCcEEEccCCcCcccCC
Q 041683 375 LSSLLSLNLRNNILSGIIPTSFK-NFSSLEVLDLG--E----NELVGSIPS-----WIGERFSILKILNLRSNKFHGDFP 442 (743)
Q Consensus 375 l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls--~----n~i~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~ 442 (743)
+++|++|.+..|.+++.....+. .+++|+.|+++ + +.++ ..|. .+...+++|+.|++++ .+++...
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 56666666666666544333333 35666666666 2 3343 1111 1233566777777765 4443333
Q ss_pred ccccC-CCCccEEEccCCccccccCccc-cccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhccccc
Q 041683 443 IQLCG-LAFLQILDVASNSLSGTIPRCI-NNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNL 520 (743)
Q Consensus 443 ~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (743)
..+.. +++|+.|++++|.+++..+..+ .. +++
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~----------------------------------------------~~~ 482 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG----------------------------------------------CDS 482 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHH----------------------------------------------CTT
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhc----------------------------------------------CCC
Confidence 33333 6677777777777654322222 11 333
Q ss_pred ccEEEccCCcCcccCch-hhcccCCCCEEeCCCCcCcccCCCCC-CCCCCccEEECcCCcC
Q 041683 521 VRSIDVSKNIFSGEIPV-EVTNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQL 579 (743)
Q Consensus 521 L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l 579 (743)
|++|++++|.+++.... ....+++|++|++++|+++......+ ..++.|+...+..+.-
T Consensus 483 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 57777777777544333 23457778888888887754333333 3456776666665544
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.8e-24 Score=239.08 Aligned_cols=202 Identities=27% Similarity=0.282 Sum_probs=129.1
Q ss_pred CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683 328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL 407 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 407 (743)
++|++|++++|.+.+. |. .+++|+.|++++|++++ +|.. +++|++|++++|.++++ |. .+++|+.|++
T Consensus 101 ~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L 168 (622)
T 3g06_A 101 PGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWA 168 (622)
T ss_dssp TTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEEC
T ss_pred CCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEEC
Confidence 4566666666666532 22 34566666666666663 3332 35666666666666643 22 2356666777
Q ss_pred CCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhh
Q 041683 408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVIL 487 (743)
Q Consensus 408 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 487 (743)
++|.++ .+| ..+++|+.|++++|.+.+ +|.. +++|+.|++++|.+. .+|..
T Consensus 169 ~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~------------------- 219 (622)
T 3g06_A 169 YNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL------------------- 219 (622)
T ss_dssp CSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC-------------------
T ss_pred CCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC-------------------
Confidence 777666 455 235667777777777664 3322 356777777777665 22221
Q ss_pred hccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCC
Q 041683 488 YSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMR 567 (743)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 567 (743)
+++|+.|++++|.+++ +| ..+++|+.|+|++|.++ .+|. .++
T Consensus 220 ------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~ 261 (622)
T 3g06_A 220 ------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPS 261 (622)
T ss_dssp ------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCT
T ss_pred ------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccc
Confidence 1235777777777774 44 44577888888888887 5555 567
Q ss_pred CccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683 568 SIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS 609 (743)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 609 (743)
+|+.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|.
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 8888888888888 6677788888888888888888877665
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-25 Score=244.92 Aligned_cols=227 Identities=21% Similarity=0.173 Sum_probs=194.6
Q ss_pred hhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccC
Q 041683 318 HLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFK 397 (743)
Q Consensus 318 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 397 (743)
..+......+++|++|++++|.+.+..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+
T Consensus 24 ~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~---- 97 (487)
T 3oja_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV---- 97 (487)
T ss_dssp HHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----
T ss_pred HHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----
Confidence 3333333446689999999999998888899999999999999999997665 8899999999999999986543
Q ss_pred CCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCcccc-cccccc
Q 041683 398 NFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCIN-NLSAMA 476 (743)
Q Consensus 398 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~ 476 (743)
.++|++|++++|.+.+..+ . .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .++.
T Consensus 98 -~~~L~~L~L~~N~l~~~~~-~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~-- 170 (487)
T 3oja_A 98 -GPSIETLHAANNNISRVSC-S---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-- 170 (487)
T ss_dssp -CTTCCEEECCSSCCCCEEE-C---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT--
T ss_pred -CCCcCEEECcCCcCCCCCc-c---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc--
Confidence 3899999999999985433 2 478999999999999998888999999999999999999987777664 4444
Q ss_pred ccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCc
Q 041683 477 ITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLT 556 (743)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 556 (743)
|+.|++++|.+++..+ +..+++|+.|+|++|.++
T Consensus 171 --------------------------------------------L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 171 --------------------------------------------LEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp --------------------------------------------CCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCC
T ss_pred --------------------------------------------ccEEecCCCccccccc--cccCCCCCEEECCCCCCC
Confidence 5999999999997633 446999999999999999
Q ss_pred ccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccc
Q 041683 557 GRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVG 605 (743)
Q Consensus 557 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 605 (743)
+.+ ..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+
T Consensus 205 ~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 205 FMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp EEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred CCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 654 459999999999999999995 67779999999999999999983
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.9e-24 Score=216.16 Aligned_cols=207 Identities=21% Similarity=0.216 Sum_probs=132.4
Q ss_pred ccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCC
Q 041683 330 IEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGE 409 (743)
Q Consensus 330 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 409 (743)
.+.+++++++++. +|..+. +++++|++++|++++..+..|..+++|++|++++|.++.+.+..|..+++|
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L------- 87 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL------- 87 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC-------
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC-------
Confidence 4555555555552 332221 345555555555554444445555555555555555544444444444444
Q ss_pred CcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhc
Q 041683 410 NELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYS 489 (743)
Q Consensus 410 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~ 489 (743)
++|++++|++.+..+..|..+++|++|++++|++.+..+..|..++.
T Consensus 88 ------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--------------- 134 (270)
T 2o6q_A 88 ------------------ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK--------------- 134 (270)
T ss_dssp ------------------CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT---------------
T ss_pred ------------------CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC---------------
Confidence 44555555444443444455555555555555555444444444333
Q ss_pred cccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCc
Q 041683 490 SLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSI 569 (743)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 569 (743)
|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|
T Consensus 135 -------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 183 (270)
T 2o6q_A 135 -------------------------------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183 (270)
T ss_dssp -------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred -------------------------------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc
Confidence 3666666666665555667888999999999999997777789999999
Q ss_pred cEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683 570 ESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS 610 (743)
Q Consensus 570 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 610 (743)
+.|++++|++++..+..+..+++|+.|++++|++.+.++..
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 224 (270)
T 2o6q_A 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred CEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence 99999999999777778889999999999999999887643
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=4.5e-24 Score=237.41 Aligned_cols=270 Identities=24% Similarity=0.280 Sum_probs=197.6
Q ss_pred CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683 122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA 201 (743)
Q Consensus 122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 201 (743)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|+++ .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence 5777777777775 4444443 67777777777777 3443 4577777777777776 4544 5677777777
Q ss_pred CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcccc
Q 041683 202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYG 281 (743)
Q Consensus 202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~ 281 (743)
++|.+..... .+.+|+.|++++|++.. +|. .+++|++|++++|.+++ +|. .+.+|+.|++++|.+++
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-cCC----ccCCCCEEECCCCCCCC
Confidence 7777765332 45567777777777764 333 24778888888888864 443 24577888888877753
Q ss_pred CCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCC
Q 041683 282 GIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH 361 (743)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 361 (743)
+| ..+++|+.|++++|.+.+ +|. .+++|+.|++++
T Consensus 176 -l~----------------------------------------~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~ 210 (622)
T 3g06_A 176 -LP----------------------------------------MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYN 210 (622)
T ss_dssp -CC----------------------------------------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred -Cc----------------------------------------ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcC
Confidence 11 114679999999999885 333 247899999999
Q ss_pred CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccC
Q 041683 362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDF 441 (743)
Q Consensus 362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 441 (743)
|.++ .+|.. +++|++|++++|.++++ | ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+
T Consensus 211 N~l~-~l~~~---~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~l 276 (622)
T 3g06_A 211 NRLT-SLPAL---PSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RL 276 (622)
T ss_dssp SCCS-SCCCC---CTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SC
T ss_pred Cccc-ccCCC---CCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cC
Confidence 9988 44432 47899999999999863 4 45688999999999998 6776 4788999999999999 67
Q ss_pred CccccCCCCccEEEccCCccccccCccccccccc
Q 041683 442 PIQLCGLAFLQILDVASNSLSGTIPRCINNLSAM 475 (743)
Q Consensus 442 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 475 (743)
|..+.++++|+.|++++|++++..|..+..++..
T Consensus 277 p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 277 PESLIHLSSETTVNLEGNPLSERTLQALREITSA 310 (622)
T ss_dssp CGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred CHHHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence 8889999999999999999998888877766643
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=8.8e-24 Score=213.64 Aligned_cols=212 Identities=23% Similarity=0.227 Sum_probs=184.6
Q ss_pred CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683 328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL 407 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 407 (743)
+++++|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999999888889999999999999999999888888999999999999999999988899999999999999
Q ss_pred CCCcCcccCchhHHhcccCCcEEEccCCcCccc-CCccccCCCCccEEEccCCccccccCccccccccccccCccchhhh
Q 041683 408 GENELVGSIPSWIGERFSILKILNLRSNKFHGD-FPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVI 486 (743)
Q Consensus 408 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 486 (743)
++|.+.+ ++...+..+++|++|++++|.+.+. +|..+..+++|++|++++|++.+..+..+..+..+..
T Consensus 108 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--------- 177 (276)
T 2z62_A 108 VETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL--------- 177 (276)
T ss_dssp TTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT---------
T ss_pred CCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc---------
Confidence 9999984 4443344799999999999999864 5889999999999999999999877777776665421
Q ss_pred hhccccCCCCcccccccceeeeceeeehhccccccc-EEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCC
Q 041683 487 LYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVR-SIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV 565 (743)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 565 (743)
+. .|++++|++++..+..+. ..+|++|+|++|++++..+..|..
T Consensus 178 ----------------------------------l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 178 ----------------------------------LNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp ----------------------------------CCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTT
T ss_pred ----------------------------------cceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcc
Confidence 22 899999999976666555 458999999999999777777899
Q ss_pred CCCccEEECcCCcCCCCCC
Q 041683 566 MRSIESLDLSANQLSGQIP 584 (743)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~p 584 (743)
+++|+.|++++|++++..|
T Consensus 223 l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCSCCEEECCSSCBCCCTT
T ss_pred cccccEEEccCCcccccCC
Confidence 9999999999999996543
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=5.2e-25 Score=240.41 Aligned_cols=238 Identities=21% Similarity=0.183 Sum_probs=200.8
Q ss_pred CCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCC
Q 041683 16 NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLT 95 (743)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~ 95 (743)
.+++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..+ +..+++|++|+|+ +|.+++.. ..++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls-~N~l~~l~-----~~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLN-NNYVQELL-----VGPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECC-SSEEEEEE-----ECTTCC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEec-CCcCCCCC-----CCCCcC
Confidence 44589999999999999999999999999999999999985433 8899999999999 66775433 348999
Q ss_pred EEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhcc-CCCCCCEE
Q 041683 96 SFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLG-QISNLEYL 174 (743)
Q Consensus 96 ~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L 174 (743)
+|++++|.+++..+.. ++ +|++|++++|.+.+..|..+..+++|++|+|++|.+++..|..+. .+++|++|
T Consensus 103 ~L~L~~N~l~~~~~~~---l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 103 TLHAANNNISRVSCSR---GQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp EEECCSSCCCCEEECC---CS-----SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred EEECcCCcCCCCCccc---cC-----CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 9999999998755432 33 899999999999998898999999999999999999988888886 79999999
Q ss_pred EccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCC
Q 041683 175 DLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRI 254 (743)
Q Consensus 175 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 254 (743)
+|++|.+++. +. ...+++|++|++++|.+++..+ .+..+++|+.|++++|.+.+ +|.++..+++|+.|++++|.+
T Consensus 175 ~Ls~N~l~~~-~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 175 NLQYNFIYDV-KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp ECTTSCCCEE-EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred ecCCCccccc-cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 9999999854 33 4568999999999999987654 48889999999999999984 677789999999999999999
Q ss_pred ccccChhhhhhcccCceEecc
Q 041683 255 SAKIPRGFWNSIYQYFYLNIS 275 (743)
Q Consensus 255 ~~~~~~~~~~~l~~L~~L~l~ 275 (743)
....+..++..++.++.+++.
T Consensus 250 ~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 250 HCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHTTCHHHHHHHHH
T ss_pred cCcchHHHHHhCCCCcEEecc
Confidence 733333344556777777776
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.1e-23 Score=213.55 Aligned_cols=206 Identities=22% Similarity=0.271 Sum_probs=147.7
Q ss_pred ccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCC
Q 041683 348 WMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSIL 427 (743)
Q Consensus 348 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L 427 (743)
+..++++++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++ .++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 344556666666666665 3333332 45666666666666665666666666666666666665 33332 256677
Q ss_pred cEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceee
Q 041683 428 KILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVM 507 (743)
Q Consensus 428 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (743)
++|++++|++. .+|..+..+++|++|++++|++++..|..|..++.
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~--------------------------------- 125 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE--------------------------------- 125 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT---------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC---------------------------------
Confidence 77777777776 45666677777777777777777665566665555
Q ss_pred eceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccc
Q 041683 508 KGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSM 587 (743)
Q Consensus 508 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 587 (743)
|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+
T Consensus 126 -------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 126 -------------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191 (290)
T ss_dssp -------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred -------------CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence 377888888887777777888999999999999999666667788999999999999998 677777
Q ss_pred cCcCCCCeeeCcCCcccccC
Q 041683 588 SNLSFLNHLNLSNNNLVGKI 607 (743)
Q Consensus 588 ~~l~~L~~L~ls~N~l~~~~ 607 (743)
..+.+|+.+++++|++.|.+
T Consensus 192 ~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 192 FGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTTCCCSEEECCSCCBCCSG
T ss_pred cccccCCeEEeCCCCccCcC
Confidence 78889999999999998765
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=5.4e-23 Score=206.89 Aligned_cols=201 Identities=22% Similarity=0.235 Sum_probs=156.2
Q ss_pred eEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 041683 304 IFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383 (743)
Q Consensus 304 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 383 (743)
.++++++.++. +|..+ .+++++|++++|++.+..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 20 ~l~~~~~~l~~-ip~~~------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 20 SVDCSSKKLTA-IPSNI------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp EEECTTSCCSS-CCSCC------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred EEEccCCCCCc-cCCCC------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 78999998875 44332 357999999999999887789999999999999999999777777899999999999
Q ss_pred cCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccc
Q 041683 384 RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG 463 (743)
Q Consensus 384 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 463 (743)
++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..|..+++|+.|++++|++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~- 170 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK- 170 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-
Confidence 999999887778888889999999888887 444443345667777777777666554444555666666655555554
Q ss_pred ccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccC
Q 041683 464 TIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQ 543 (743)
Q Consensus 464 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 543 (743)
+..+..|..++
T Consensus 171 ---------------------------------------------------------------------~~~~~~~~~l~ 181 (270)
T 2o6q_A 171 ---------------------------------------------------------------------RVPEGAFDKLT 181 (270)
T ss_dssp ---------------------------------------------------------------------CCCTTTTTTCT
T ss_pred ---------------------------------------------------------------------EeChhHhccCC
Confidence 34444567778
Q ss_pred CCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCC
Q 041683 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQ 582 (743)
Q Consensus 544 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 582 (743)
+|++|+|++|++++..+..|..+++|+.|++++|++...
T Consensus 182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 888888888888866666788888888888888888754
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.8e-23 Score=209.07 Aligned_cols=205 Identities=21% Similarity=0.200 Sum_probs=143.7
Q ss_pred ccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCC
Q 041683 348 WMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSIL 427 (743)
Q Consensus 348 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L 427 (743)
...+++|+.|++++|.+.. . ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+. .++...+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCC
Confidence 3445566666666666652 2 2355666666666666666543 35666666777777777666 3443333356677
Q ss_pred cEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceee
Q 041683 428 KILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVM 507 (743)
Q Consensus 428 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (743)
++|++++|++.+..+..|..+++|++|++++|++.+..+..+..++.
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--------------------------------- 158 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN--------------------------------- 158 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---------------------------------
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc---------------------------------
Confidence 77777777776655556677777777777777777555555554444
Q ss_pred eceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccc
Q 041683 508 KGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSM 587 (743)
Q Consensus 508 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 587 (743)
|+.|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+.
T Consensus 159 -------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----- 220 (272)
T 3rfs_A 159 -------------LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----- 220 (272)
T ss_dssp -------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-----
T ss_pred -------------CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-----
Confidence 47777777777766677778889999999999999988777788899999999999988754
Q ss_pred cCcCCCCeeeCcCCcccccCCCC
Q 041683 588 SNLSFLNHLNLSNNNLVGKIPSS 610 (743)
Q Consensus 588 ~~l~~L~~L~ls~N~l~~~~p~~ 610 (743)
++.|+.++++.|.++|.+|..
T Consensus 221 --~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 221 --CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp --TTTTHHHHHHHHHTGGGBBCT
T ss_pred --CcHHHHHHHHHHhCCCcccCc
Confidence 446888899999999998874
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.7e-22 Score=204.88 Aligned_cols=202 Identities=21% Similarity=0.169 Sum_probs=178.0
Q ss_pred CCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEE
Q 041683 326 FSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVL 405 (743)
Q Consensus 326 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 405 (743)
.++++++++++++.++. +|..+. ++++.|++++|.+++..+..|..+++|++|++++|.++++.+ ...+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence 46789999999999985 454443 689999999999998888899999999999999999997644 3789999999
Q ss_pred eCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhh
Q 041683 406 DLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAV 485 (743)
Q Consensus 406 ~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 485 (743)
++++|.+. .+|..+. .+++|++|++++|++++..+..|.++++|++|++++|++.+..+..|..+++
T Consensus 83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~----------- 149 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK----------- 149 (290)
T ss_dssp ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-----------
T ss_pred ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC-----------
Confidence 99999998 7887654 7999999999999999887788999999999999999999776666666655
Q ss_pred hhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCC
Q 041683 486 ILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV 565 (743)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 565 (743)
|+.|++++|++++..+..|..+++|+.|+|++|+++ .+|..+..
T Consensus 150 -----------------------------------L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~ 193 (290)
T 1p9a_G 150 -----------------------------------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193 (290)
T ss_dssp -----------------------------------CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred -----------------------------------CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence 599999999999777777899999999999999999 78888888
Q ss_pred CCCccEEECcCCcCCC
Q 041683 566 MRSIESLDLSANQLSG 581 (743)
Q Consensus 566 l~~L~~L~Ls~N~l~~ 581 (743)
+.+|+.|+|++|++..
T Consensus 194 ~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 194 SHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TCCCSEEECCSCCBCC
T ss_pred cccCCeEEeCCCCccC
Confidence 9999999999999974
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.5e-24 Score=225.40 Aligned_cols=259 Identities=19% Similarity=0.204 Sum_probs=197.2
Q ss_pred eEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCC----ccccCCC-CCCEEECCCCcCcccCCccccCC---
Q 041683 304 IFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIP----DCWMNWL-RLRALNLGHNNFTGSLPMSIGTL--- 375 (743)
Q Consensus 304 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l--- 375 (743)
..+++.+.+++.++.... ..++|++|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~----~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTS----IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCCHHHHHHT----SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccchHHHHHHHh----CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 356677777777665543 25669999999999997766 7788888 89999999999997777666664
Q ss_pred --CCCcEEEccCccccccCCcc----cCCC-CCCCEEeCCCCcCcccCchhHHhc----ccCCcEEEccCCcCcccCC--
Q 041683 376 --SSLLSLNLRNNILSGIIPTS----FKNF-SSLEVLDLGENELVGSIPSWIGER----FSILKILNLRSNKFHGDFP-- 442 (743)
Q Consensus 376 --~~L~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~Ls~n~i~~~~~~~~~~~----l~~L~~L~L~~n~l~~~~~-- 442 (743)
++|++|++++|.+++..+.. +..+ ++|++|++++|.+.+..+..+... .++|++|++++|.+.....
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 89999999999998776654 4444 899999999999986555544322 3689999999999985433
Q ss_pred --ccccCCC-CccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhccc-
Q 041683 443 --IQLCGLA-FLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSIL- 518 (743)
Q Consensus 443 --~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 518 (743)
..+..++ +|++|++++|++++..+..+...- ...
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------------------------------------~~~~ 195 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFL------------------------------------------ASIP 195 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH------------------------------------------HTSC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHH------------------------------------------HhCC
Confidence 3345555 999999999999876655443220 012
Q ss_pred ccccEEEccCCcCccc----Cchhhcc-cCCCCEEeCCCCcCcccCC----CCCCCCCCccEEECcCCcCCCCCC-----
Q 041683 519 NLVRSIDVSKNIFSGE----IPVEVTN-LQGLQSLNLSHNLLTGRIP----DNIGVMRSIESLDLSANQLSGQIP----- 584 (743)
Q Consensus 519 ~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p----- 584 (743)
+.|++||+++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|+.|++++|.+.+..+
T Consensus 196 ~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~ 275 (362)
T 3goz_A 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA 275 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHH
T ss_pred CCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHH
Confidence 2479999999999863 4555655 4599999999999986544 446778999999999999654433
Q ss_pred --ccccCcCCCCeeeCcCCcccccCC
Q 041683 585 --QSMSNLSFLNHLNLSNNNLVGKIP 608 (743)
Q Consensus 585 --~~l~~l~~L~~L~ls~N~l~~~~p 608 (743)
..+..+++|+.||+++|++....|
T Consensus 276 l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 276 LGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHhccCCceEEEecCCCcCCCcch
Confidence 457788899999999999876633
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=8e-23 Score=205.78 Aligned_cols=208 Identities=22% Similarity=0.232 Sum_probs=182.2
Q ss_pred CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683 327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD 406 (743)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 406 (743)
+++|+.|++++|.+... ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 57899999999998743 3588899999999999999863 4788999999999999999988888899999999999
Q ss_pred CCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhh
Q 041683 407 LGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVI 486 (743)
Q Consensus 407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 486 (743)
+++|++. .++...+..+++|++|++++|++.+..+..+..+++|+.|++++|++++..+..+..++.
T Consensus 116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------------ 182 (272)
T 3rfs_A 116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ------------ 182 (272)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT------------
T ss_pred CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCcc------------
Confidence 9999998 555554457999999999999999877778899999999999999999777766666665
Q ss_pred hhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCC
Q 041683 487 LYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVM 566 (743)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 566 (743)
|+.|++++|++++..+..+..+++|+.|++++|.+.+. +
T Consensus 183 ----------------------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~ 221 (272)
T 3rfs_A 183 ----------------------------------LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------C 221 (272)
T ss_dssp ----------------------------------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------T
T ss_pred ----------------------------------CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------C
Confidence 59999999999988888899999999999999998744 4
Q ss_pred CCccEEECcCCcCCCCCCccccCcCC
Q 041683 567 RSIESLDLSANQLSGQIPQSMSNLSF 592 (743)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~l~~l~~ 592 (743)
++|+.|+++.|.++|.+|..++.+..
T Consensus 222 ~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 222 PGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cHHHHHHHHHHhCCCcccCcccccCC
Confidence 57999999999999999998776543
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.1e-24 Score=231.76 Aligned_cols=243 Identities=15% Similarity=0.205 Sum_probs=191.5
Q ss_pred hccCCCCCCCccEEECcCCcCcccCC----ccccCCCCCCEEECCCCcC---cccCCccc-------cCCCCCcEEEccC
Q 041683 320 ICQGENFSNNIEFLKLSKNNFSGDIP----DCWMNWLRLRALNLGHNNF---TGSLPMSI-------GTLSSLLSLNLRN 385 (743)
Q Consensus 320 ~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l---~~~~~~~~-------~~l~~L~~L~L~~ 385 (743)
++..+..+++|++|++++|.+....+ ..+..+++|++|+|++|.+ .+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 33444457889999999999986533 4477899999999999744 44455444 6889999999999
Q ss_pred ccccc----cCCcccCCCCCCCEEeCCCCcCcccCchhHHh---cc---------cCCcEEEccCCcCc-ccCC---ccc
Q 041683 386 NILSG----IIPTSFKNFSSLEVLDLGENELVGSIPSWIGE---RF---------SILKILNLRSNKFH-GDFP---IQL 445 (743)
Q Consensus 386 n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~---~l---------~~L~~L~L~~n~l~-~~~~---~~~ 445 (743)
|.+.. .++..+..+++|++|+|++|.+.+..+..+.. .+ ++|++|++++|++. +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99987 46677889999999999999997444433332 23 89999999999997 3344 457
Q ss_pred cCCCCccEEEccCCcccc-----ccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhccccc
Q 041683 446 CGLAFLQILDVASNSLSG-----TIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNL 520 (743)
Q Consensus 446 ~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (743)
..+++|++|++++|++.. ..|..+..+ +.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~----------------------------------------------~~ 217 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC----------------------------------------------QE 217 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC----------------------------------------------TT
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC----------------------------------------------CC
Confidence 788999999999999872 222233333 44
Q ss_pred ccEEEccCCcCc----ccCchhhcccCCCCEEeCCCCcCccc----CCCCC--CCCCCccEEECcCCcCCC----CCCcc
Q 041683 521 VRSIDVSKNIFS----GEIPVEVTNLQGLQSLNLSHNLLTGR----IPDNI--GVMRSIESLDLSANQLSG----QIPQS 586 (743)
Q Consensus 521 L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~ 586 (743)
|+.|+|++|.++ ..+|..+..+++|++|+|++|.+++. ++..+ +.+++|+.|+|++|.+++ .+|..
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~ 297 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence 699999999996 67888899999999999999999865 56666 348999999999999997 47777
Q ss_pred c-cCcCCCCeeeCcCCcccccCC
Q 041683 587 M-SNLSFLNHLNLSNNNLVGKIP 608 (743)
Q Consensus 587 l-~~l~~L~~L~ls~N~l~~~~p 608 (743)
+ .++++|++|++++|++++..|
T Consensus 298 l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 298 IDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHhcCCCceEEEccCCcCCcchh
Confidence 6 568999999999999998765
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.5e-22 Score=199.58 Aligned_cols=211 Identities=19% Similarity=0.222 Sum_probs=131.5
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEc
Q 041683 353 RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNL 432 (743)
Q Consensus 353 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L 432 (743)
..++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+.+ ++...+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEEC
Confidence 4566777777766 4444443 466666666666666666566666666666666666653 22222224445555555
Q ss_pred cCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceee
Q 041683 433 RSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLV 512 (743)
Q Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (743)
++|++.+..+..|..+++|
T Consensus 91 ~~n~l~~~~~~~~~~l~~L------------------------------------------------------------- 109 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQL------------------------------------------------------------- 109 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTC-------------------------------------------------------------
T ss_pred CCCcccccChhHhcccCCC-------------------------------------------------------------
Confidence 5555544333344444444
Q ss_pred ehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCC
Q 041683 513 EYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSF 592 (743)
Q Consensus 513 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 592 (743)
++|++++|++++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++
T Consensus 110 ---------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 110 ---------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp ---------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ---------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 55555555555555556778889999999999999777778999999999999999999888888999999
Q ss_pred CCeeeCcCCcccccCCCCcccC------CCCCccccCCCCCCCCCC-CCCCC
Q 041683 593 LNHLNLSNNNLVGKIPSSTQLQ------SFGASSFAGNDLCGDPLS-NCTEK 637 (743)
Q Consensus 593 L~~L~ls~N~l~~~~p~~~~~~------~l~~~~~~~n~l~~~~~~-~c~~~ 637 (743)
|+.|++++|+++|..+....+. ........|+.+++.|.. .|...
T Consensus 181 L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 181 LQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG 232 (251)
T ss_dssp CCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred CCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence 9999999999998754432211 111223445666666554 56543
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.6e-23 Score=220.47 Aligned_cols=259 Identities=17% Similarity=0.090 Sum_probs=174.3
Q ss_pred CCCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCc----hhhcCCC-CCCEEEcCCCccccccCcccccCC-----CCCC
Q 041683 1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVL----GWLSKVN-DLEFLSVYSNRLQGNVSSLGLENL-----TSIK 70 (743)
Q Consensus 1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l-----~~L~ 70 (743)
|+.|++++.+|..+...++|++|||++|.+.+..+ +.|..++ +|++|+|++|.+++..+. .+..+ ++|+
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPANVT 83 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCC
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCCCcc
Confidence 56788888777766777778888888888877776 7778888 888888888888744333 55554 8888
Q ss_pred EEEcCCCCcCCcccchh----ccCC-CCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccc----hhhc
Q 041683 71 RLYLSENDELGGKIPTS----FGKL-CKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHL----TNQL 141 (743)
Q Consensus 71 ~L~Ls~~~~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~----~~~l 141 (743)
+|+|+ +|.+++..+.. +..+ ++|++|++++|.++...+..+...-.....+|++|++++|.+.... +..+
T Consensus 84 ~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 84 SLNLS-GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp EEECC-SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred EEECc-CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888 66676666554 3444 7888888888888776665554321111127888888888886533 3344
Q ss_pred cCCC-CCCEEECcCccCccccchhc----cCC-CCCCEEEccCCCCccc----cChhhhcC-CCCCCEEECCCCcceeec
Q 041683 142 RRFK-RLNSLDLSNTILDGSIPFSL----GQI-SNLEYLDLSNNKLNGT----VSEIHFVN-LTKLAFFRANGNSLIFKI 210 (743)
Q Consensus 142 ~~l~-~L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~~~~~~~~-l~~L~~L~l~~n~~~~~~ 210 (743)
..++ +|++|+|++|.+++..+..+ ..+ ++|++|+|++|.+++. ++. .+.. .++|++|++++|.+....
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHHSCTTCCEEECCSSCCCCCC
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-HHhcCCCCceEEECcCCCCCcHH
Confidence 5555 88888888888876665443 344 5888888888888731 333 2333 457888888888776533
Q ss_pred C----CCCCCCccccEEEcCCCcCCCCc-------chhhcCCCCCCEEEccCCCCccccChhh
Q 041683 211 N----PNWVPPFQLTVLELRSCHLGPRF-------PLWLQSQRELNDLDISSTRISAKIPRGF 262 (743)
Q Consensus 211 ~----~~~~~~~~L~~L~l~~n~l~~~~-------~~~l~~l~~L~~L~l~~n~i~~~~~~~~ 262 (743)
. ..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+..+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 2 23455667777777777744322 2244566667777777777765544433
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.4e-23 Score=223.19 Aligned_cols=264 Identities=14% Similarity=0.149 Sum_probs=181.0
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCch----hhcCCCCCCEEEcCCCcc---ccccCcc------cccCCCCCCEEEcCC
Q 041683 10 IPSRLGNLTSLKYLDLSSNELNSTVLG----WLSKVNDLEFLSVYSNRL---QGNVSSL------GLENLTSIKRLYLSE 76 (743)
Q Consensus 10 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l---~~~~~~~------~~~~l~~L~~L~Ls~ 76 (743)
++.++..+++|++|+|++|.+....+. .|..+++|++|+|++|.+ ++.+|.. .+.++++|++|+|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls- 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS- 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC-
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC-
Confidence 455677788899999999888765443 466888899999988643 3344441 13678889999998
Q ss_pred CCcCCc----ccchhccCCCCCCEEEccCCcCcccchhhhhccccccc---------CCccEEEccCCcCc-ccch---h
Q 041683 77 NDELGG----KIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA---------NELESLRLGSSQIF-GHLT---N 139 (743)
Q Consensus 77 ~~~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~---------~~L~~L~L~~n~~~-~~~~---~ 139 (743)
++.+.+ .+|..+.++++|++|++++|.++...+..+...- ... ++|++|++++|++. ...+ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL-QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHH-HHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHH-HHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 666766 4677788888899999988888654443333220 000 27888888888886 3344 4
Q ss_pred hccCCCCCCEEECcCccCcc-----ccchhccCCCCCCEEEccCCCCc----cccChhhhcCCCCCCEEECCCCcceee-
Q 041683 140 QLRRFKRLNSLDLSNTILDG-----SIPFSLGQISNLEYLDLSNNKLN----GTVSEIHFVNLTKLAFFRANGNSLIFK- 209 (743)
Q Consensus 140 ~l~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~l~~n~~~~~- 209 (743)
.+..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ ..++. .+..+++|++|++++|.+...
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhh
Confidence 56778888888888888873 23447778888888888888885 35555 577888888888888887654
Q ss_pred ---cCCCC--CCCccccEEEcCCCcCCC----Ccchhh-cCCCCCCEEEccCCCCccccC--hhhhhhcccCceEeccc
Q 041683 210 ---INPNW--VPPFQLTVLELRSCHLGP----RFPLWL-QSQRELNDLDISSTRISAKIP--RGFWNSIYQYFYLNISG 276 (743)
Q Consensus 210 ---~~~~~--~~~~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~i~~~~~--~~~~~~l~~L~~L~l~~ 276 (743)
++..+ ..+++|+.|++++|.++. .+|..+ .++++|+.|++++|.+++..+ ..+...+++++.+++..
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 22333 236677888888887765 355555 556778888888887776553 44455555555444443
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.1e-22 Score=197.45 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=41.4
Q ss_pred CccEEECcCCcCcccCCccccCCCCCCEEECCCCc-CcccCCccccCCCCCcEEEccC-ccccccCCcccCCCCCCCEEe
Q 041683 329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN-FTGSLPMSIGTLSSLLSLNLRN-NILSGIIPTSFKNFSSLEVLD 406 (743)
Q Consensus 329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~ 406 (743)
++++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.++++.+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444444455555555555554 4433334444455555555554 444444444444444455555
Q ss_pred CCCCcCc
Q 041683 407 LGENELV 413 (743)
Q Consensus 407 Ls~n~i~ 413 (743)
+++|+++
T Consensus 112 l~~n~l~ 118 (239)
T 2xwt_C 112 IFNTGLK 118 (239)
T ss_dssp EEEECCC
T ss_pred CCCCCCc
Confidence 5444444
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.6e-22 Score=207.83 Aligned_cols=205 Identities=21% Similarity=0.259 Sum_probs=123.1
Q ss_pred CCccEEECcCCcCcccCCccc--cCCCCCCEEECCCCcCcccCC----ccccCCCCCcEEEccCccccccCCcccCCCCC
Q 041683 328 NNIEFLKLSKNNFSGDIPDCW--MNWLRLRALNLGHNNFTGSLP----MSIGTLSSLLSLNLRNNILSGIIPTSFKNFSS 401 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 401 (743)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..|..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 346666666666666666555 566666666666666664333 22334566666666666666555566666666
Q ss_pred CCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCc----cccccccccc
Q 041683 402 LEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR----CINNLSAMAI 477 (743)
Q Consensus 402 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~ 477 (743)
|++|++++|++.+... + ..+..+..+++|++|++++|+++. ++. .+..
T Consensus 171 L~~L~Ls~N~l~~~~~--~-------------------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~------ 222 (310)
T 4glp_A 171 LTSLDLSDNPGLGERG--L-------------------MAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA------ 222 (310)
T ss_dssp CCEEECCSCTTCHHHH--H-------------------HTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH------
T ss_pred CCEEECCCCCCccchh--h-------------------hHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc------
Confidence 6666666666542100 0 001122345555566666665541 111 0111
Q ss_pred cCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhccc---CCCCEEeCCCCc
Q 041683 478 TDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNL---QGLQSLNLSHNL 554 (743)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~N~ 554 (743)
++.|++||+++|++++..|..+..+ ++|++|+|++|+
T Consensus 223 ----------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 223 ----------------------------------------GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp ----------------------------------------TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred ----------------------------------------CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC
Confidence 2224666666666665555555554 688888888888
Q ss_pred CcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccc
Q 041683 555 LTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVG 605 (743)
Q Consensus 555 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 605 (743)
++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 263 l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 263 LE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 88 6677664 7888888888888854 33 5677888888888888764
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=6.7e-22 Score=195.07 Aligned_cols=198 Identities=19% Similarity=0.243 Sum_probs=169.8
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCcEEEccCcc-ccccCCcccCCCCCCCEEeCCC-CcCcccCchhHHhcccCCcE
Q 041683 352 LRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNI-LSGIIPTSFKNFSSLEVLDLGE-NELVGSIPSWIGERFSILKI 429 (743)
Q Consensus 352 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~l~~L~~ 429 (743)
++|++|++++|++++..+..|.++++|++|++++|. ++.+.+..|.++++|++|++++ |.++ .++...+..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 489999999999998878799999999999999997 9888888999999999999999 9998 666555557999999
Q ss_pred EEccCCcCcccCCccccCCCCcc---EEEccCC-ccccccCccccccccccccCccchhhhhhccccCCCCcccccccce
Q 041683 430 LNLRSNKFHGDFPIQLCGLAFLQ---ILDVASN-SLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASL 505 (743)
Q Consensus 430 L~L~~n~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (743)
|++++|++.+ +|. |..+++|+ +|++++| .+.+..+..|.+++.|
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------------------ 157 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------------------ 157 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS------------------------------
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc------------------------------
Confidence 9999999996 665 88888888 9999999 9987666677766664
Q ss_pred eeeceeeehhccccccc-EEEccCCcCcccCchhhcccCCCCEEeCCCCc-CcccCCCCCCCC-CCccEEECcCCcCCCC
Q 041683 506 VMKGVLVEYNSILNLVR-SIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNL-LTGRIPDNIGVM-RSIESLDLSANQLSGQ 582 (743)
Q Consensus 506 ~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~ 582 (743)
+ +|++++|+++...+..|.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|++++.
T Consensus 158 ----------------~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 158 ----------------TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp ----------------EEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred ----------------eeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC
Confidence 8 9999999999555555555 899999999995 997777889999 9999999999999954
Q ss_pred CCccccCcCCCCeeeCcCCc
Q 041683 583 IPQSMSNLSFLNHLNLSNNN 602 (743)
Q Consensus 583 ~p~~l~~l~~L~~L~ls~N~ 602 (743)
|.. .+++|+.|+++++.
T Consensus 221 -~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 221 -PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp -CCT--TCTTCSEEECTTC-
T ss_pred -Chh--HhccCceeeccCcc
Confidence 443 67889999998874
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.9e-22 Score=209.03 Aligned_cols=250 Identities=18% Similarity=0.180 Sum_probs=201.3
Q ss_pred CCCEEECCCCCCCCCCchhhcCC--CCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcc-cchhccCCCCCC
Q 041683 19 SLKYLDLSSNELNSTVLGWLSKV--NDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGK-IPTSFGKLCKLT 95 (743)
Q Consensus 19 ~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~-~~~~l~~l~~L~ 95 (743)
.++.++++++.+. +..+..+ +++++|++++|.+.+..+. +.++++|++|+++ ++.+.+. ++..+..+++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~-~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECT-TCEECHHHHHHHHTTBCCCS
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEcc-CCCcCHHHHHHHHhhCCCCC
Confidence 4789999999875 5667777 8999999999999866554 6689999999999 5667655 788899999999
Q ss_pred EEEccCCcCcccchhhhhcccccccCCccEEEccCC-cCcc-cchhhccCCCCCCEEECcCc-cCccc-cchhccCCC-C
Q 041683 96 SFSMRFTKLSQDISEILGIFSACVANELESLRLGSS-QIFG-HLTNQLRRFKRLNSLDLSNT-ILDGS-IPFSLGQIS-N 170 (743)
Q Consensus 96 ~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n-~~~~-~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~-~ 170 (743)
+|++++|.+++..+..+..++ +|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~-----~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNS-----NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCT-----TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred EEeCcCcccCHHHHHHHhcCC-----CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 999999999887888887777 9999999999 5765 36777889999999999999 88864 577788899 9
Q ss_pred CCEEEccCC--CCc-cccChhhhcCCCCCCEEECCCCc-ceeecCCCCCCCccccEEEcCCCc-CCCCcchhhcCCCCCC
Q 041683 171 LEYLDLSNN--KLN-GTVSEIHFVNLTKLAFFRANGNS-LIFKINPNWVPPFQLTVLELRSCH-LGPRFPLWLQSQRELN 245 (743)
Q Consensus 171 L~~L~L~~n--~l~-~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~ 245 (743)
|++|++++| .++ +.++. .+..+++|++|++++|. ++......+..+++|+.|++++|. +.......+..+++|+
T Consensus 197 L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence 999999999 454 34444 57789999999999998 666666678888999999999995 3333333678899999
Q ss_pred EEEccCCCCccccChhhhhhc-ccCceEecccCccccCCCC
Q 041683 246 DLDISSTRISAKIPRGFWNSI-YQYFYLNISGNQIYGGIPK 285 (743)
Q Consensus 246 ~L~l~~n~i~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~ 285 (743)
.|++++| ++. ..+..+ ..+..|++++|++++..|.
T Consensus 276 ~L~l~~~-i~~----~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 276 TLQVFGI-VPD----GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp EEECTTS-SCT----TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred EEeccCc-cCH----HHHHHHHhhCcceEEecccCccccCC
Confidence 9999999 433 222222 3477778899999887765
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.4e-22 Score=211.41 Aligned_cols=231 Identities=16% Similarity=0.224 Sum_probs=159.2
Q ss_pred CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCccc-CCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683 328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGS-LPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD 406 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 406 (743)
++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5688888888888766554 45678888888888887754 666677788888888888887777777777888888888
Q ss_pred CCCC-cCccc-CchhHHhcccCCcEEEccCC-cCccc-CCccccCCC-CccEEEccCCc--cc-cccCcccccccccccc
Q 041683 407 LGEN-ELVGS-IPSWIGERFSILKILNLRSN-KFHGD-FPIQLCGLA-FLQILDVASNS--LS-GTIPRCINNLSAMAIT 478 (743)
Q Consensus 407 Ls~n-~i~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~Ls~N~--l~-~~~p~~~~~l~~L~~~ 478 (743)
+++| .+++. ++..+ ..+++|++|++++| .+++. ++..+..++ +|++|++++|. ++ +.+|..+..+
T Consensus 149 L~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~------ 221 (336)
T 2ast_B 149 LSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC------ 221 (336)
T ss_dssp CTTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC------
T ss_pred CCCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC------
Confidence 8888 56542 34333 36788888888888 77643 455677777 88888888884 33 2233333333
Q ss_pred CccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCc-CcccCchhhcccCCCCEEeCCCCc-Cc
Q 041683 479 DSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNI-FSGEIPVEVTNLQGLQSLNLSHNL-LT 556 (743)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~ 556 (743)
++|++|++++|. +++..+..+..+++|++|++++|. ++
T Consensus 222 ----------------------------------------~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 222 ----------------------------------------PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp ----------------------------------------TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ----------------------------------------CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 335788888887 666667777788888888888884 32
Q ss_pred ccCCCCCCCCCCccEEECcCCcCCCCCCccccCc-CCCCeeeCcCCcccccCCCC
Q 041683 557 GRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNL-SFLNHLNLSNNNLVGKIPSS 610 (743)
Q Consensus 557 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~~ 610 (743)
......++.+++|+.|++++| ++ .+.+..+ ..|+.|++++|++++..|..
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence 222224677788888888887 33 2234444 34777778888888777653
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.7e-21 Score=199.61 Aligned_cols=193 Identities=24% Similarity=0.395 Sum_probs=119.9
Q ss_pred CCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcE
Q 041683 350 NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKI 429 (743)
Q Consensus 350 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~ 429 (743)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++ .+ ..+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~-~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AI-AGLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GG-TTCTTCCE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hh-cCCCCCCE
Confidence 44555566666655553 22 35555666666666666554333 556666666666666655 333 22 24566666
Q ss_pred EEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeec
Q 041683 430 LNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKG 509 (743)
Q Consensus 430 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (743)
|++++|++.+. + .+..+++|+.|++++|++.+..+ +..++
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~------------------------------------ 151 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLT------------------------------------ 151 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCT------------------------------------
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCC------------------------------------
Confidence 66666666542 2 25666666666666666653322 32222
Q ss_pred eeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccC
Q 041683 510 VLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSN 589 (743)
Q Consensus 510 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 589 (743)
.|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..| +..
T Consensus 152 ----------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~ 215 (308)
T 1h6u_A 152 ----------NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN 215 (308)
T ss_dssp ----------TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred ----------CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccC
Confidence 24677777777764333 7777888888888888874433 7778888888888888875543 677
Q ss_pred cCCCCeeeCcCCcccc
Q 041683 590 LSFLNHLNLSNNNLVG 605 (743)
Q Consensus 590 l~~L~~L~ls~N~l~~ 605 (743)
+++|+.|++++|++++
T Consensus 216 l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 216 TSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEEEEEEEEEC
T ss_pred CCCCCEEEccCCeeec
Confidence 8888888888888865
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=3.9e-21 Score=196.96 Aligned_cols=192 Identities=22% Similarity=0.332 Sum_probs=164.5
Q ss_pred CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683 327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD 406 (743)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 406 (743)
+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 5689999999999985 34 68899999999999999996544 89999999999999999865 3689999999999
Q ss_pred CCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhh
Q 041683 407 LGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVI 486 (743)
Q Consensus 407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 486 (743)
+++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..++.
T Consensus 114 l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~------------ 174 (308)
T 1h6u_A 114 LTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK------------ 174 (308)
T ss_dssp CTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT------------
T ss_pred CCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCC------------
Confidence 9999998 5664 3479999999999999996543 8899999999999999985433 444444
Q ss_pred hhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCC
Q 041683 487 LYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVM 566 (743)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 566 (743)
|+.|++++|++++..+ +..+++|++|+|++|++++.. .+..+
T Consensus 175 ----------------------------------L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l 216 (308)
T 1h6u_A 175 ----------------------------------LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANT 216 (308)
T ss_dssp ----------------------------------CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTC
T ss_pred ----------------------------------CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCC
Confidence 6999999999986544 889999999999999999655 38899
Q ss_pred CCccEEECcCCcCCC
Q 041683 567 RSIESLDLSANQLSG 581 (743)
Q Consensus 567 ~~L~~L~Ls~N~l~~ 581 (743)
++|+.|++++|++++
T Consensus 217 ~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 217 SNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEEEEEEEEEC
T ss_pred CCCCEEEccCCeeec
Confidence 999999999999985
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=201.40 Aligned_cols=225 Identities=21% Similarity=0.234 Sum_probs=171.6
Q ss_pred CCCEEECCCCcCcccCCc---cccCCCCCcEEEccCccccccCCccc--CCCCCCCEEeCCCCcCcccCch---hHHhcc
Q 041683 353 RLRALNLGHNNFTGSLPM---SIGTLSSLLSLNLRNNILSGIIPTSF--KNFSSLEVLDLGENELVGSIPS---WIGERF 424 (743)
Q Consensus 353 ~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~~---~~~~~l 424 (743)
.++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+. .....+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466677776665421100 12234568888888888887777777 7888888888888888754441 222268
Q ss_pred cCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccc--c--CccccccccccccCccchhhhhhccccCCCCcccc
Q 041683 425 SILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGT--I--PRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIF 500 (743)
Q Consensus 425 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (743)
++|++|++++|++.+..+..|..+++|++|++++|++.+. + +.++..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~----------------------------- 195 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK----------------------------- 195 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS-----------------------------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc-----------------------------
Confidence 8999999999999988888999999999999999998642 1 112233
Q ss_pred cccceeeeceeeehhcccccccEEEccCCcCcccCch----hhcccCCCCEEeCCCCcCcccCCCCCCCC---CCccEEE
Q 041683 501 EDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPV----EVTNLQGLQSLNLSHNLLTGRIPDNIGVM---RSIESLD 573 (743)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~ 573 (743)
+++|++|++++|+++. ++. .+..+++|++|+|++|++++..|..+..+ ++|++|+
T Consensus 196 -----------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~ 257 (310)
T 4glp_A 196 -----------------FPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN 257 (310)
T ss_dssp -----------------SCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE
T ss_pred -----------------CCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE
Confidence 3346999999999973 232 35788999999999999998888888777 6999999
Q ss_pred CcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCCCCCC
Q 041683 574 LSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGNDLCG 628 (743)
Q Consensus 574 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~l~~ 628 (743)
+++|+++ .+|..+. ++|++||+++|++++. |....++.++.+++.+|.+..
T Consensus 258 Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 258 LSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred CCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence 9999999 6677664 8999999999999974 444567888889999987653
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.1e-20 Score=187.87 Aligned_cols=181 Identities=21% Similarity=0.240 Sum_probs=149.4
Q ss_pred CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683 328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL 407 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 407 (743)
...++++++++.+.. +|..+. +.++.|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 457899999999984 555444 68999999999999888889999999999999999999998889999999999999
Q ss_pred CCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhh
Q 041683 408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVIL 487 (743)
Q Consensus 408 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 487 (743)
++|.+. .++...+..+++|++|++++|++.+..+..|..+++|+.|++++|++.+
T Consensus 91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------------ 145 (251)
T 3m19_A 91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS------------------------ 145 (251)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------------------
T ss_pred CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc------------------------
Confidence 999998 6665555689999999999999997766667888888888887777763
Q ss_pred hccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCC
Q 041683 488 YSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMR 567 (743)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 567 (743)
..+..|..+++|++|+|++|++++..+..|..++
T Consensus 146 ----------------------------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 146 ----------------------------------------------IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp ----------------------------------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ----------------------------------------------cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 2333466677777888888888766666777788
Q ss_pred CccEEECcCCcCCCC
Q 041683 568 SIESLDLSANQLSGQ 582 (743)
Q Consensus 568 ~L~~L~Ls~N~l~~~ 582 (743)
+|+.|++++|++++.
T Consensus 180 ~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 180 KLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSCCBCTT
T ss_pred CCCEEEeeCCceeCC
Confidence 888888888888755
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.6e-20 Score=196.43 Aligned_cols=237 Identities=17% Similarity=0.110 Sum_probs=178.3
Q ss_pred CCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCC
Q 041683 2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELG 81 (743)
Q Consensus 2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~ 81 (743)
++++++ .+|..+ .+++++|+|++|+|+.+.+++|.++++|++|+|++|.+.+.++..+|.++++++++...+++.+.
T Consensus 17 ~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 17 QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp ESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred cCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 456777 567666 36899999999999888888999999999999999998767887789999998865544377888
Q ss_pred cccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccC-CcCcccchhhccCCC-CCCEEECcCccCcc
Q 041683 82 GKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGS-SQIFGHLTNQLRRFK-RLNSLDLSNTILDG 159 (743)
Q Consensus 82 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~-n~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~ 159 (743)
...|.+|..+++|++|++++|.+....+..+.... ++..|++.+ +.+....+..|..+. .+++|++++|.|+.
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~-----~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL-----QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS-----SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccc-----hhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 88888999999999999999998765444443333 678888865 566666666777764 68899999999985
Q ss_pred ccchhccCCCCCCEEEccC-CCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhh
Q 041683 160 SIPFSLGQISNLEYLDLSN-NKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWL 238 (743)
Q Consensus 160 ~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 238 (743)
+ |.......+|++|++++ |.++ .++...|..+++|++|++++|+++...+..+. +|+.|.+.++.--..+|. +
T Consensus 169 i-~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~-l 242 (350)
T 4ay9_X 169 I-HNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT-L 242 (350)
T ss_dssp E-CTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC-T
T ss_pred C-ChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC-c
Confidence 4 44444567899999975 5555 78877889999999999999988766554443 455555555443334553 6
Q ss_pred cCCCCCCEEEccCC
Q 041683 239 QSQRELNDLDISST 252 (743)
Q Consensus 239 ~~l~~L~~L~l~~n 252 (743)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 77788888887654
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=6.7e-20 Score=191.64 Aligned_cols=243 Identities=14% Similarity=0.144 Sum_probs=185.0
Q ss_pred CCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCC-ccccCCCCCcE
Q 041683 302 GPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLP-MSIGTLSSLLS 380 (743)
Q Consensus 302 ~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~ 380 (743)
+..++++++.++. +|..+ .+++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+| .+|.+++++++
T Consensus 11 ~~~v~C~~~~Lt~-iP~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 11 NRVFLCQESKVTE-IPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TTEEEEESTTCCS-CCTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CCEEEecCCCCCc-cCcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 3478888888874 44333 3579999999999998777889999999999999999876544 57889988775
Q ss_pred -EEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccC-CcCcccCCccccCCC-CccEEEcc
Q 041683 381 -LNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRS-NKFHGDFPIQLCGLA-FLQILDVA 457 (743)
Q Consensus 381 -L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls 457 (743)
+.+++|+++.+.|..|..+++|++|++++|++. .+|...+....++..|++.+ +.+....+..|..+. .++.|+++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred hhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 666779999888999999999999999999998 55554443566788888866 567766666777765 58899999
Q ss_pred CCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccC-CcCcccCc
Q 041683 458 SNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSK-NIFSGEIP 536 (743)
Q Consensus 458 ~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~ 536 (743)
+|++....+..|. ... ++++++++ |.++...+
T Consensus 163 ~N~i~~i~~~~f~-~~~----------------------------------------------L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 163 KNGIQEIHNSAFN-GTQ----------------------------------------------LDELNLSDNNNLEELPN 195 (350)
T ss_dssp SSCCCEECTTSST-TEE----------------------------------------------EEEEECTTCTTCCCCCT
T ss_pred cccccCCChhhcc-ccc----------------------------------------------hhHHhhccCCcccCCCH
Confidence 9999854444443 222 58899975 66765555
Q ss_pred hhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcc
Q 041683 537 VEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603 (743)
Q Consensus 537 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 603 (743)
..|.++++|++|||++|+|+...+.. +.+|+.|.+.++.-...+|. +..+++|+.++++++.-
T Consensus 196 ~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 196 DVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPSH 258 (350)
T ss_dssp TTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHHH
T ss_pred HHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCcc
Confidence 67899999999999999999444433 45666666666554446774 78899999999987643
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=179.79 Aligned_cols=158 Identities=22% Similarity=0.208 Sum_probs=128.4
Q ss_pred CEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCC-ccccCCCCccEEEccCCccccccCccccccccccccCcc
Q 041683 403 EVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSY 481 (743)
Q Consensus 403 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 481 (743)
+.+++++|.++ .+|..+ ...+++|++++|++.+..+ ..|..+++|+.|++++|++++..+..|..++.
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~------- 82 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG------- 82 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT-------
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC-------
Confidence 46777777765 566543 2346777777777776543 34777888888888888887666666666555
Q ss_pred chhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCC
Q 041683 482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD 561 (743)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 561 (743)
|++|++++|++++..+..|..+++|++|+|++|++++..|.
T Consensus 83 ---------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 123 (220)
T 2v70_A 83 ---------------------------------------VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123 (220)
T ss_dssp ---------------------------------------CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred ---------------------------------------CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence 48888888888878888899999999999999999988899
Q ss_pred CCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683 562 NIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS 610 (743)
Q Consensus 562 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 610 (743)
.|..+++|+.|+|++|++++..|..|..+++|+.|++++|+++|.++-.
T Consensus 124 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 9999999999999999999998999999999999999999999987744
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.1e-19 Score=175.08 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=50.7
Q ss_pred cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCC
Q 041683 522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN 601 (743)
Q Consensus 522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 601 (743)
++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+.+. +++|+.|+++.|
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n 175 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWIN 175 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHH
Confidence 3334444444433344456666777777777777755555566777777777777766532 346677777777
Q ss_pred cccccCCCC
Q 041683 602 NLVGKIPSS 610 (743)
Q Consensus 602 ~l~~~~p~~ 610 (743)
.++|.+|..
T Consensus 176 ~~~g~ip~~ 184 (208)
T 2o6s_A 176 KHSGVVRNS 184 (208)
T ss_dssp HCTTTBBCT
T ss_pred hCCceeecc
Confidence 777777753
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.1e-19 Score=172.98 Aligned_cols=128 Identities=23% Similarity=0.248 Sum_probs=60.0
Q ss_pred cEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCC
Q 041683 331 EFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN 410 (743)
Q Consensus 331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n 410 (743)
+.++.+++.+.. +|..+ .++|++|++++|++++..+..|..+++|++|++++|.++++.+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 344555555442 22221 235555555555555444444555555555555555555444444455555555555555
Q ss_pred cCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccc
Q 041683 411 ELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS 462 (743)
Q Consensus 411 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 462 (743)
.+. .++...+..+++|++|++++|++.+..+..|..+++|++|++++|++.
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 554 333332223444444444444444333333444444444444444443
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=3.8e-19 Score=172.34 Aligned_cols=156 Identities=19% Similarity=0.224 Sum_probs=128.5
Q ss_pred CEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccc
Q 041683 403 EVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD 482 (743)
Q Consensus 403 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 482 (743)
+.++++++.++ .+|..+ .++++.|++++|++.+..+..|..+++|+.|+|++|++.+..|..|.+++.|
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 46677777776 566543 2567788888888876666678888888888888888887777777766654
Q ss_pred hhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCC
Q 041683 483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN 562 (743)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 562 (743)
++|+|++|+++...+..|.++++|++|+|++|++++..|..
T Consensus 83 ---------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 123 (220)
T 2v9t_B 83 ---------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA 123 (220)
T ss_dssp ---------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ---------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHH
Confidence 88888888888666667889999999999999999888999
Q ss_pred CCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCC
Q 041683 563 IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIP 608 (743)
Q Consensus 563 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 608 (743)
|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 124 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 9999999999999999998888889999999999999999998654
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=7.1e-19 Score=193.11 Aligned_cols=115 Identities=30% Similarity=0.402 Sum_probs=71.2
Q ss_pred CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCC
Q 041683 329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG 408 (743)
Q Consensus 329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 408 (743)
+++.|++++|.+.+ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67777777777775 44433 256777777777776 444 335677777777777765 343 443 67777777
Q ss_pred CCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccc
Q 041683 409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG 463 (743)
Q Consensus 409 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 463 (743)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++
T Consensus 129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 777663 554 35666666666666664 333 34566666666666553
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.4e-18 Score=169.61 Aligned_cols=158 Identities=23% Similarity=0.218 Sum_probs=129.6
Q ss_pred CCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCcc
Q 041683 402 LEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSY 481 (743)
Q Consensus 402 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 481 (743)
-+.++.+++.+. .+|..+ .++|++|++++|.+.+..+..|..+++|+.|++++|++....+..|..++.
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~------- 89 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ------- 89 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC-------
Confidence 456777777776 666543 367888888888888777777888888888888888887555555555555
Q ss_pred chhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCC
Q 041683 482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD 561 (743)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 561 (743)
|+.|++++|++++..+..|..+++|++|+|++|+++ .+|.
T Consensus 90 ---------------------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 129 (229)
T 3e6j_A 90 ---------------------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR 129 (229)
T ss_dssp ---------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT
T ss_pred ---------------------------------------cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc
Confidence 488888888888777777899999999999999999 8888
Q ss_pred CCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683 562 NIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS 610 (743)
Q Consensus 562 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 610 (743)
.+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++..
T Consensus 130 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 130 GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence 9999999999999999999877788999999999999999999987743
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=2e-18 Score=189.60 Aligned_cols=118 Identities=29% Similarity=0.428 Sum_probs=97.2
Q ss_pred CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683 328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL 407 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 407 (743)
++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 57899999999998 455 457899999999999996 665 654 99999999999987 444 6789999999
Q ss_pred CCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCc
Q 041683 408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR 467 (743)
Q Consensus 408 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 467 (743)
++|.++ .+|. .+++|++|++++|++++ +|. |. ++|+.|++++|+|+ .+|.
T Consensus 148 s~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 148 DNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA 197 (571)
T ss_dssp CSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC
T ss_pred CCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh
Confidence 999998 4776 47899999999999996 666 65 88999999999887 4444
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.3e-18 Score=176.45 Aligned_cols=186 Identities=23% Similarity=0.324 Sum_probs=106.7
Q ss_pred EECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcC
Q 041683 333 LKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL 412 (743)
Q Consensus 333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i 412 (743)
+.+..+.+.+.. .+..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 344444444322 234456666777776666633 2 35566666666666666665433 66666666666666666
Q ss_pred cccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhcccc
Q 041683 413 VGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLR 492 (743)
Q Consensus 413 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~ 492 (743)
. .++. + ..+++|++|++++|++.+. ..+..+++|+.|++++|++
T Consensus 103 ~-~~~~-l-~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l------------------------------- 146 (291)
T 1h6t_A 103 K-DLSS-L-KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKI------------------------------- 146 (291)
T ss_dssp C-CGGG-G-TTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCC-------------------------------
T ss_pred C-CChh-h-ccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcC-------------------------------
Confidence 5 3332 2 2455555555555555532 2344445555555555544
Q ss_pred CCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEE
Q 041683 493 SEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESL 572 (743)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 572 (743)
++. ..+..+++|++|++++|++++..| +..+++|+.|
T Consensus 147 ---------------------------------------~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 147 ---------------------------------------TDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp ---------------------------------------CCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred ---------------------------------------Ccc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence 332 345566667777777777764433 6667777777
Q ss_pred ECcCCcCCCCCCccccCcCCCCeeeCcCCcccc
Q 041683 573 DLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVG 605 (743)
Q Consensus 573 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 605 (743)
++++|++++ +| .+..+++|+.|++++|+++.
T Consensus 184 ~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 184 YLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 777777764 33 36667777777777777664
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=4.6e-18 Score=172.40 Aligned_cols=173 Identities=23% Similarity=0.382 Sum_probs=124.8
Q ss_pred CCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCC
Q 041683 14 LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCK 93 (743)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~ 93 (743)
+..+++|++|++++|.+... ..+..+++|++|++++|.++ .++. +.++++|++|+++ +|.+.+ + ..+..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~-~n~l~~-~-~~l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLD-ENKVKD-L-SSLKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECC-SSCCCC-G-GGGTTCTT
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECC-CCcCCC-C-hhhccCCC
Confidence 45677888888888887665 23777888888888888887 4443 7788888888888 555654 2 34778888
Q ss_pred CCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCE
Q 041683 94 LTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEY 173 (743)
Q Consensus 94 L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 173 (743)
|++|++++|.++.. ..+..++ +|++|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~-----~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLP-----QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCT-----TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCEEECCCCcCCCC--hhhcCCC-----CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 88888888877663 3455555 788888888877654 457777888888888888875544 777788888
Q ss_pred EEccCCCCccccChhhhcCCCCCCEEECCCCccee
Q 041683 174 LDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIF 208 (743)
Q Consensus 174 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 208 (743)
|++++|.++ .++. +..+++|+.|++++|++..
T Consensus 183 L~L~~N~i~-~l~~--l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCC-BCGG--GTTCTTCSEEEEEEEEEEC
T ss_pred EECCCCcCC-CChh--hccCCCCCEEECcCCcccC
Confidence 888888776 4443 6777777777777776653
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.1e-18 Score=183.23 Aligned_cols=179 Identities=26% Similarity=0.218 Sum_probs=107.0
Q ss_pred CEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccC-CCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEcc
Q 041683 355 RALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFK-NFSSLEVLDLGENELVGSIPSWIGERFSILKILNLR 433 (743)
Q Consensus 355 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~ 433 (743)
+.++++++.++ .+|..+. +.++.|+|++|.++++.+..|. .+++|++|+|++|++. .++...+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 56777777777 3454442 3567777777777766666665 6666666666666665 3332222345555555555
Q ss_pred CCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeee
Q 041683 434 SNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVE 513 (743)
Q Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (743)
+|++.+..+..|..+++|+.|+|
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L--------------------------------------------------------- 119 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLL--------------------------------------------------------- 119 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEEC---------------------------------------------------------
T ss_pred CCcCCcCCHHHhCCCcCCCEEEC---------------------------------------------------------
Confidence 55555444444445555555544
Q ss_pred hhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCC---CCCCCccEEECcCCcCCCCCCccccCc
Q 041683 514 YNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNI---GVMRSIESLDLSANQLSGQIPQSMSNL 590 (743)
Q Consensus 514 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l 590 (743)
++|++++..|..|.++++|+.|+|++|++++..+..| ..+++|+.|+|++|+|+...+..+..+
T Consensus 120 -------------~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 186 (361)
T 2xot_A 120 -------------YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186 (361)
T ss_dssp -------------CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred -------------CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence 4555544555566667777777777777774333334 457777777777777775555566666
Q ss_pred CC--CCeeeCcCCcccccC
Q 041683 591 SF--LNHLNLSNNNLVGKI 607 (743)
Q Consensus 591 ~~--L~~L~ls~N~l~~~~ 607 (743)
+. |+.|++++|++.|.+
T Consensus 187 ~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 187 PAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp CHHHHTTEECCSSCEECCH
T ss_pred cHhhcceEEecCCCccCCc
Confidence 65 377777887777654
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=3.5e-18 Score=189.94 Aligned_cols=124 Identities=24% Similarity=0.297 Sum_probs=52.5
Q ss_pred CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683 328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL 407 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 407 (743)
++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+. ..+..+++|+.|+|
T Consensus 43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEe
Confidence 3444444444444422 1 24444444444444444443222 44444444444444444432 13444444444444
Q ss_pred CCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccc
Q 041683 408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS 462 (743)
Q Consensus 408 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 462 (743)
++|.+. .++. + ..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.
T Consensus 117 s~N~l~-~l~~-l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 117 EHNGIS-DING-L-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp TTSCCC-CCGG-G-GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred cCCCCC-CCcc-c-cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 444444 2221 1 1344444444444444432 23444444444444444444
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.5e-17 Score=159.48 Aligned_cols=156 Identities=15% Similarity=0.184 Sum_probs=114.5
Q ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEcc
Q 041683 21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR 100 (743)
Q Consensus 21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~ 100 (743)
+++++++|.++.+ |..+ .+.+++|+|++|.+++..+...|.++++|++|+++ ++.+++..+.+|.++++|++|+++
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECC-CCcCCEECHHHhCCCCCCCEEECC
Confidence 5788888888654 4333 24567888888888854454467888888888888 667777767778888888888888
Q ss_pred CCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCC
Q 041683 101 FTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180 (743)
Q Consensus 101 ~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 180 (743)
+|.+++..+..+..++ +|++|+|++|++.+..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.
T Consensus 90 ~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLENVQHKMFKGLE-----SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCCCCGGGGTTCS-----SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCccCHhHhcCCc-----CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 8887776666666666 77777777777777777777777777777777777776667777777777777777777
Q ss_pred Ccccc
Q 041683 181 LNGTV 185 (743)
Q Consensus 181 l~~~~ 185 (743)
+....
T Consensus 165 l~c~c 169 (220)
T 2v70_A 165 FNCNC 169 (220)
T ss_dssp EECSG
T ss_pred CcCCC
Confidence 66433
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.8e-17 Score=184.11 Aligned_cols=183 Identities=22% Similarity=0.372 Sum_probs=140.4
Q ss_pred CCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCc
Q 041683 3 GNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGG 82 (743)
Q Consensus 3 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~ 82 (743)
.+.+....+ +..+++|++|++++|.+..+. .|..+++|++|+|++|.++ .++. +..+++|++|+|+ +|.+.+
T Consensus 30 ~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls-~N~l~~ 101 (605)
T 1m9s_A 30 KKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLD-ENKIKD 101 (605)
T ss_dssp CSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECC-SSCCCC
T ss_pred CCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECc-CCCCCC
Confidence 444444332 567888888999988886653 4888899999999999887 4453 7888899999998 556654
Q ss_pred ccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccc
Q 041683 83 KIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIP 162 (743)
Q Consensus 83 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 162 (743)
+ ..+..+++|++|+|++|.+... ..+..++ +|+.|+|++|.+.+. ..+..+++|++|+|++|.+++..|
T Consensus 102 -l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-----~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 102 -L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLP-----QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp -C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCT-----TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred -C-hhhccCCCCCEEEecCCCCCCC--ccccCCC-----ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 2 3688888899999988888763 3455555 888888888888765 568888888888888888886655
Q ss_pred hhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceee
Q 041683 163 FSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFK 209 (743)
Q Consensus 163 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 209 (743)
+..+++|++|+|++|++. .++ .+..+++|+.|++++|.+...
T Consensus 171 --l~~l~~L~~L~Ls~N~i~-~l~--~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHIS-DLR--ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GTTCTTCCEEECCSSCCC-BCG--GGTTCTTCSEEECCSEEEECC
T ss_pred --hccCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEccCCcCcCC
Confidence 888888888888888887 444 478888888888888887654
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=4e-17 Score=159.22 Aligned_cols=154 Identities=23% Similarity=0.302 Sum_probs=92.9
Q ss_pred CEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccC
Q 041683 355 RALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRS 434 (743)
Q Consensus 355 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~ 434 (743)
+.++.+++.+. .+|..+. ++|++|++++|.++++.+..|..+++|++|++++|++. .+|...+..+++|++|+|++
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence 34555555554 3333222 45555555555555555555555566666666666554 44433333455555555555
Q ss_pred CcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeeh
Q 041683 435 NKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEY 514 (743)
Q Consensus 435 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (743)
|++++..+..|..+++|+.|++++|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~---------------------------------------------------- 125 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT---------------------------------------------------- 125 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC----------------------------------------------------
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc----------------------------------------------------
Confidence 5555444444555555555555555554
Q ss_pred hcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCC
Q 041683 515 NSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQI 583 (743)
Q Consensus 515 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 583 (743)
.+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.+..
T Consensus 126 -------------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 126 -------------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp -------------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred -------------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 44555667788888888888888666677888888888888888887543
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.5e-17 Score=174.47 Aligned_cols=177 Identities=21% Similarity=0.183 Sum_probs=143.5
Q ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCccccc-CCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEc
Q 041683 21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLE-NLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSM 99 (743)
Q Consensus 21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L 99 (743)
+++++++++++.+ |..+. +.+++|+|++|.++ .++...|. ++++|++|+|+ +|.+++..+.+|.++++|++|++
T Consensus 21 ~~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSC-CSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCcc-CccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECC-CCcCCccChhhccCCCCCCEEEC
Confidence 6888998888664 43332 45888999999998 45544676 88999999998 67787777788899999999999
Q ss_pred cCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhc---cCCCCCCEEEc
Q 041683 100 RFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSL---GQISNLEYLDL 176 (743)
Q Consensus 100 ~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L 176 (743)
++|+++...+..+..+. +|++|+|++|.+....+..|..+++|++|+|++|.+++..+..| ..+++|++|+|
T Consensus 96 s~N~l~~~~~~~~~~l~-----~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQ-----ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CSSCCCEECTTTTTTCT-----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CCCcCCcCCHHHhCCCc-----CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 99998876666777777 89999999999988888899999999999999999996555555 56899999999
Q ss_pred cCCCCccccChhhhcCCCC--CCEEECCCCccee
Q 041683 177 SNNKLNGTVSEIHFVNLTK--LAFFRANGNSLIF 208 (743)
Q Consensus 177 ~~n~l~~~~~~~~~~~l~~--L~~L~l~~n~~~~ 208 (743)
++|+++ .++...+..++. ++.|++++|++..
T Consensus 171 ~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 171 SSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCCC-ccCHHHhhhccHhhcceEEecCCCccC
Confidence 999998 666667888887 4889999998864
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=8.7e-18 Score=158.96 Aligned_cols=111 Identities=23% Similarity=0.322 Sum_probs=81.9
Q ss_pred ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683 521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN 600 (743)
Q Consensus 521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 600 (743)
|++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|++++
T Consensus 56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 36677777777767777788888888888888888877777788888888888888888888888888888888888888
Q ss_pred CcccccCCCCcccCCCCCccccCC-CCCCCCC
Q 041683 601 NNLVGKIPSSTQLQSFGASSFAGN-DLCGDPL 631 (743)
Q Consensus 601 N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~~ 631 (743)
|+++|.++.......+....+.++ ..|+.|.
T Consensus 136 N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 136 NPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 888887764332222222234444 5565543
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2e-17 Score=157.46 Aligned_cols=153 Identities=18% Similarity=0.256 Sum_probs=86.1
Q ss_pred cCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhccccc
Q 041683 39 SKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSAC 118 (743)
Q Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 118 (743)
..+++|++|++++|.++ .++ .+..+++|++|+++ ++.+. .+..+..+++|++|++++|.+++..+..+..++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~-~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-- 112 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTIN-NIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT-- 112 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEE-SCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT--
T ss_pred hhcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEcc-CCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC--
Confidence 44455555666655555 444 25555566666665 33332 223455566666666666665554444455444
Q ss_pred ccCCccEEEccCCcCcccchhhccCCCCCCEEECcCcc-CccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCC
Q 041683 119 VANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTI-LDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLA 197 (743)
Q Consensus 119 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 197 (743)
+|++|++++|.+.+..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|+++ .++ .+..+++|+
T Consensus 113 ---~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-~~~--~l~~l~~L~ 184 (197)
T 4ezg_A 113 ---SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-DYR--GIEDFPKLN 184 (197)
T ss_dssp ---TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-CCT--TGGGCSSCC
T ss_pred ---CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-ChH--HhccCCCCC
Confidence 56666666666655555666666666666666665 44 333 4666666666666666665 333 356666666
Q ss_pred EEECCCCcce
Q 041683 198 FFRANGNSLI 207 (743)
Q Consensus 198 ~L~l~~n~~~ 207 (743)
+|++++|++.
T Consensus 185 ~L~l~~N~i~ 194 (197)
T 4ezg_A 185 QLYAFSQTIG 194 (197)
T ss_dssp EEEECBC---
T ss_pred EEEeeCcccC
Confidence 6666666653
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=5e-17 Score=157.34 Aligned_cols=151 Identities=17% Similarity=0.241 Sum_probs=76.2
Q ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEcc
Q 041683 21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR 100 (743)
Q Consensus 21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~ 100 (743)
+.+++++++++.+. ..+. ++|++|++++|.++ .++...|.++++|++|+|+ +|.+.+..|.+|.++++|++|+++
T Consensus 14 ~~v~c~~~~l~~iP-~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIP-TNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCC-SSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECC-SSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCC-CccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECC-CCcCCCcCHHHhhCCcCCCEEECC
Confidence 45666666664432 2222 46666666666666 3443356666666666666 455555555566666555555555
Q ss_pred CCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCC
Q 041683 101 FTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180 (743)
Q Consensus 101 ~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 180 (743)
+|.++...+..+..++ +|++|+|++|++.+..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.
T Consensus 89 ~N~l~~l~~~~f~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 89 GNKITELPKSLFEGLF-----SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp SSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCccCHhHccCCC-----CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 5555433333333333 44444444444444444444444444444444444443333334444444444444444
Q ss_pred C
Q 041683 181 L 181 (743)
Q Consensus 181 l 181 (743)
+
T Consensus 164 ~ 164 (220)
T 2v9t_B 164 F 164 (220)
T ss_dssp E
T ss_pred c
Confidence 3
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.6e-17 Score=158.03 Aligned_cols=152 Identities=18% Similarity=0.275 Sum_probs=90.7
Q ss_pred CCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCcccccccccccc
Q 041683 399 FSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAIT 478 (743)
Q Consensus 399 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~ 478 (743)
+++|+.|++++|.+. .+| .+ ..+++|++|++++|.+.. +..+..+++|++|++++|++.+..|..+..++.
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---- 113 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GI-EYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS---- 113 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TG-GGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT----
T ss_pred cCCccEEeccCCCcc-ChH-HH-hcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCC----
Confidence 344444444444444 333 22 234555555555554431 124555666666666666665544544444433
Q ss_pred CccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCc-Ccc
Q 041683 479 DSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNL-LTG 557 (743)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 557 (743)
|++|++++|++++..+..+..+++|++|++++|+ ++
T Consensus 114 ------------------------------------------L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~- 150 (197)
T 4ezg_A 114 ------------------------------------------LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT- 150 (197)
T ss_dssp ------------------------------------------CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-
T ss_pred ------------------------------------------CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-
Confidence 3666666666666666777777888888888887 55
Q ss_pred cCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccc
Q 041683 558 RIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVG 605 (743)
Q Consensus 558 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 605 (743)
.+| .+..+++|+.|++++|++++. + .+..+++|++|++++|++.+
T Consensus 151 ~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 151 DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 454 577788888888888888753 3 56777888888888887653
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=2e-17 Score=171.32 Aligned_cols=100 Identities=16% Similarity=0.089 Sum_probs=48.7
Q ss_pred CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCc-EEEccCccccccCCcccCCCCCCCEEe
Q 041683 328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLL-SLNLRNNILSGIIPTSFKNFSSLEVLD 406 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~L~ 406 (743)
++|+.+++++|++..+.+.+|.++++|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 44555555555555444445555555555555554 4434444455555555 555544 44444444455555555555
Q ss_pred CCCCcCcccCchhHHhcccCCcEE
Q 041683 407 LGENELVGSIPSWIGERFSILKIL 430 (743)
Q Consensus 407 Ls~n~i~~~~~~~~~~~l~~L~~L 430 (743)
+++|.+. .++...|.++++|+.+
T Consensus 304 l~~n~i~-~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 304 ATGDKIT-TLGDELFGNGVPSKLI 326 (329)
T ss_dssp ECSSCCC-EECTTTTCTTCCCCEE
T ss_pred eCCCccC-ccchhhhcCCcchhhh
Confidence 5444444 3444333344444444
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.8e-17 Score=165.27 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=43.6
Q ss_pred CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCC
Q 041683 329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG 408 (743)
Q Consensus 329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 408 (743)
++..++++++.+.+.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4555566666665332 35556666666666666653 23 45555566666666665554333 5555555555555
Q ss_pred CCcCc
Q 041683 409 ENELV 413 (743)
Q Consensus 409 ~n~i~ 413 (743)
+|++.
T Consensus 94 ~N~l~ 98 (263)
T 1xeu_A 94 RNRLK 98 (263)
T ss_dssp SSCCS
T ss_pred CCccC
Confidence 55554
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.9e-17 Score=165.08 Aligned_cols=80 Identities=20% Similarity=0.376 Sum_probs=58.3
Q ss_pred ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683 521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN 600 (743)
Q Consensus 521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 600 (743)
|+.|++++|++++. +.+..+++|++|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++
T Consensus 108 L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 108 LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 46666666666642 2467778888888888888743 3 577788888888888888765 5577788888888888
Q ss_pred Cccccc
Q 041683 601 NNLVGK 606 (743)
Q Consensus 601 N~l~~~ 606 (743)
|++++.
T Consensus 182 N~~~~~ 187 (263)
T 1xeu_A 182 QKCVNE 187 (263)
T ss_dssp EEEECC
T ss_pred CcccCC
Confidence 888765
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=3e-19 Score=197.30 Aligned_cols=87 Identities=25% Similarity=0.334 Sum_probs=62.9
Q ss_pred ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCC-CccccCcCCCCeeeCc
Q 041683 521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQI-PQSMSNLSFLNHLNLS 599 (743)
Q Consensus 521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls 599 (743)
|+.|++++|.++ .+|..++.+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|+|+
T Consensus 465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 366777777776 566677777777777777777774 55 6777777777777777777665 7777777777777777
Q ss_pred CCcccccCCCC
Q 041683 600 NNNLVGKIPSS 610 (743)
Q Consensus 600 ~N~l~~~~p~~ 610 (743)
+|++++.+|..
T Consensus 542 ~N~l~~~~~~~ 552 (567)
T 1dce_A 542 GNSLCQEEGIQ 552 (567)
T ss_dssp TSGGGGSSSCT
T ss_pred CCcCCCCccHH
Confidence 77777766644
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.8e-17 Score=189.18 Aligned_cols=192 Identities=23% Similarity=0.205 Sum_probs=110.5
Q ss_pred EEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCc
Q 041683 332 FLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENE 411 (743)
Q Consensus 332 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 411 (743)
.++++.|.+. ..++.|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 3444555555 55677788888888888888887 56666667888888888888888 667778888888888888888
Q ss_pred CcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccc
Q 041683 412 LVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSL 491 (743)
Q Consensus 412 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~ 491 (743)
++ .+|..+. .+++|++|+|++|.+. .+|..|..+++|+.|+|++|++++.+|..+..+...
T Consensus 282 l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~---------------- 342 (727)
T 4b8c_D 282 LT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT---------------- 342 (727)
T ss_dssp CS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH----------------
T ss_pred CC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh----------------
Confidence 87 7787765 6888888888888887 667778888889999999998888877766544322
Q ss_pred cCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCC--------cCcccCCCCC
Q 041683 492 RSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHN--------LLTGRIPDNI 563 (743)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~ 563 (743)
...+++++|.+++.+|. .|+.|++++| .+.+..+..+
T Consensus 343 -----------------------------~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~ 387 (727)
T 4b8c_D 343 -----------------------------GLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLA 387 (727)
T ss_dssp -----------------------------HHHHHHHHCCCCCCCCC------C---------------------------
T ss_pred -----------------------------hhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchh
Confidence 13367778888777664 3555666666 3333334444
Q ss_pred CCCCCccEEECcCCcCC
Q 041683 564 GVMRSIESLDLSANQLS 580 (743)
Q Consensus 564 ~~l~~L~~L~Ls~N~l~ 580 (743)
..+..++...+++|-+.
T Consensus 388 ~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 388 TDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------CCC
T ss_pred hcccccceeeeeccccc
Confidence 55555666666666654
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=1.6e-16 Score=164.51 Aligned_cols=245 Identities=15% Similarity=0.147 Sum_probs=117.3
Q ss_pred CCCCCEEECCCCCCC--------------------CCCchhhcC--------CCCCCEEEcCCCccccccCcccccCCCC
Q 041683 17 LTSLKYLDLSSNELN--------------------STVLGWLSK--------VNDLEFLSVYSNRLQGNVSSLGLENLTS 68 (743)
Q Consensus 17 l~~L~~L~Ls~n~l~--------------------~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 68 (743)
+++|++|||++|+|. .+.+.+|.+ +++|+.|+|+. .++ .++..+|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence 778999999999887 334456666 77777777777 666 566667777777
Q ss_pred CCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCcc-EEEccCCcCcccchhhc----cC
Q 041683 69 IKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELE-SLRLGSSQIFGHLTNQL----RR 143 (743)
Q Consensus 69 L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~-~L~L~~n~~~~~~~~~l----~~ 143 (743)
|+.|+++ ++.+....+.+|.++.++..+....+..... ...+.......+..|+ .+.+.... .++..+ ..
T Consensus 126 L~~l~l~-~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~-~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~ 200 (329)
T 3sb4_A 126 LKICQIR-KKTAPNLLPEALADSVTAIFIPLGSSDAYRF-KNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQ 200 (329)
T ss_dssp CCEEEBC-CSSCCEECTTSSCTTTCEEEECTTCTHHHHT-STTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCC
T ss_pred cceEEcC-CCCccccchhhhcCCCceEEecCcchhhhhc-cccccccccccccccceeEEecCCC---cHHHHHhhcccC
Confidence 7777777 5555555666677766666655543211000 0001111111111333 22222211 111111 11
Q ss_pred CCCCCEEECcCccCccccchhc-cCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCcccc-
Q 041683 144 FKRLNSLDLSNTILDGSIPFSL-GQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLT- 221 (743)
Q Consensus 144 l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~- 221 (743)
..+++.+.+.++-.. .....+ ..+++|++|++++|+++ .++...|.++++|+.+++.+| +.......|..+.+|+
T Consensus 201 ~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 201 PRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp GGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred ccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence 233344444333111 111111 12444444444444444 444444444444444444444 4444444444444454
Q ss_pred EEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEe
Q 041683 222 VLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLN 273 (743)
Q Consensus 222 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~ 273 (743)
.+++.+ .+....+.+|.++++|+.++++.|.++ .++...|..+++|+.++
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence 444444 343344445555555555555555553 24444444445555443
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=2.4e-16 Score=149.02 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=113.7
Q ss_pred CEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCc-cccCCCCccEEEccCCccccccCccccccccccccCcc
Q 041683 403 EVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI-QLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSY 481 (743)
Q Consensus 403 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 481 (743)
+++++++|.+. .+|..+. .++++|++++|++.+..+. .|..+++|++|++++|++++..|..|..++.|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 56777777775 6665432 3677777777777755543 37777888888888888877777777666554
Q ss_pred chhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCC
Q 041683 482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD 561 (743)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 561 (743)
++|++++|++++..+..|.++++|++|+|++|++++..|.
T Consensus 81 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 120 (192)
T 1w8a_A 81 ----------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120 (192)
T ss_dssp ----------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred ----------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence 7888888888877787888999999999999999988899
Q ss_pred CCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683 562 NIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS 609 (743)
Q Consensus 562 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 609 (743)
.|..+++|++|++++|++++..+-.. -...++...+..+...+..|.
T Consensus 121 ~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 121 SFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp SSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST
T ss_pred HhhcCCCCCEEEeCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCCh
Confidence 99999999999999999987654210 011233345556666666564
No 123
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.66 E-value=4e-15 Score=158.01 Aligned_cols=335 Identities=11% Similarity=0.099 Sum_probs=167.9
Q ss_pred CCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccch
Q 041683 30 LNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDIS 109 (743)
Q Consensus 30 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 109 (743)
++.+...+|.++++|+.+.+..+ ++ .++..+|.++++|+.+++. ++ ++.....+|.++.+|+.+.+..+ +.....
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp-~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIP-DS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCC-TT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeC-CC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 44455566777777777777543 54 5555567777777777775 22 33344556666666666555432 111111
Q ss_pred hhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhh
Q 041683 110 EILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIH 189 (743)
Q Consensus 110 ~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 189 (743)
..+... .+....... ........+|.++++|+.+.+.++.. .+...+|.++.+|+.+++..+ ++ .++...
T Consensus 134 ~aF~~~------~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~ 203 (394)
T 4fs7_A 134 EAFKGC------DFKEITIPE-GVTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LK-IIRDYC 203 (394)
T ss_dssp TTTTTC------CCSEEECCT-TCCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CC-EECTTT
T ss_pred eeeecc------cccccccCc-cccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ce-EeCchh
Confidence 122211 122222111 12223345677778888888865543 355567777888888877655 43 566667
Q ss_pred hcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccC
Q 041683 190 FVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQY 269 (743)
Q Consensus 190 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L 269 (743)
|.++..|+.+.+..+... +...+.....|+.+.+.... .......+..+..++.+.+..+... +....+..+
T Consensus 204 F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~--- 275 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR--IGGSLFYNC--- 275 (394)
T ss_dssp TTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTC---
T ss_pred hccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce--eeccccccc---
Confidence 777777777776655332 12233333455555554321 1222334444555555555443221 222222223
Q ss_pred ceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCcccc
Q 041683 270 FYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWM 349 (743)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 349 (743)
..++.+......+ ....|.
T Consensus 276 ----------------------------------------------------------~~l~~~~~~~~~i---~~~~F~ 294 (394)
T 4fs7_A 276 ----------------------------------------------------------SGLKKVIYGSVIV---PEKTFY 294 (394)
T ss_dssp ----------------------------------------------------------TTCCEEEECSSEE---CTTTTT
T ss_pred ----------------------------------------------------------cccceeccCceee---cccccc
Confidence 3333333333221 223444
Q ss_pred CCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcE
Q 041683 350 NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKI 429 (743)
Q Consensus 350 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~ 429 (743)
.+.+|+.+.+..+ +..+...+|.++.+|+.+++.++ ++.+...+|.+|++|+.+++..+ ++ .++...|.++.+|+.
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKK 370 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCE
T ss_pred ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCE
Confidence 5555555555433 33344445555555555555432 44444455555555555555544 33 444444445555665
Q ss_pred EEccCCcCcccCCccccCCCCccEE
Q 041683 430 LNLRSNKFHGDFPIQLCGLAFLQIL 454 (743)
Q Consensus 430 L~L~~n~l~~~~~~~~~~l~~L~~L 454 (743)
+++..+ +. .+..+|.++++|+.+
T Consensus 371 i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 371 VELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EEECCC-CE-EhhheecCCCCCcEE
Confidence 555443 11 123345566655543
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=6.5e-19 Score=194.65 Aligned_cols=205 Identities=18% Similarity=0.091 Sum_probs=135.2
Q ss_pred cCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCc-------------CCcccchhccCCCCCCEEE-ccCCcC
Q 041683 39 SKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDE-------------LGGKIPTSFGKLCKLTSFS-MRFTKL 104 (743)
Q Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~-------------l~~~~~~~l~~l~~L~~L~-L~~n~l 104 (743)
..+++|+.|+|++|.++ .+|. .++++++|+.|+++ ++. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~-~i~~l~~L~~L~l~-~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQS-ELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHH-HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHH-hhHH-HHHHHHHHHHhccc-cchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 56778888888888887 7777 78888888888887 543 3344455555555665555 343322
Q ss_pred cccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccc
Q 041683 105 SQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGT 184 (743)
Q Consensus 105 ~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 184 (743)
. +|+.+.+++|.+....+ ..|++|+|++|.+++ +|. |+.+++|++|+|++|+++ .
T Consensus 423 ~----------------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 423 D----------------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp H----------------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred c----------------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c
Confidence 1 12223333333322211 246777777777764 454 677777777777777776 6
Q ss_pred cChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCc-chhhcCCCCCCEEEccCCCCccccCh--h
Q 041683 185 VSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRF-PLWLQSQRELNDLDISSTRISAKIPR--G 261 (743)
Q Consensus 185 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~--~ 261 (743)
+|. .+..+++|++|++++|.+++. + .+..+++|+.|++++|++.+.. |..+..+++|+.|++++|.+++..+. .
T Consensus 478 lp~-~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 478 LPP-ALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp CCG-GGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred cch-hhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 665 567777777777777777653 2 5666777777777777777665 88888999999999999999765442 2
Q ss_pred hhhhcccCceEec
Q 041683 262 FWNSIYQYFYLNI 274 (743)
Q Consensus 262 ~~~~l~~L~~L~l 274 (743)
+...+++|+.|++
T Consensus 555 l~~~lp~L~~L~l 567 (567)
T 1dce_A 555 LAEMLPSVSSILT 567 (567)
T ss_dssp HHHHCTTCSEEEC
T ss_pred HHHHCcccCccCC
Confidence 4455788888764
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=3.2e-17 Score=187.08 Aligned_cols=221 Identities=18% Similarity=0.164 Sum_probs=118.6
Q ss_pred CCccEEECcCCcCcccCCccccCCCC-----CCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCC
Q 041683 328 NNIEFLKLSKNNFSGDIPDCWMNWLR-----LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSL 402 (743)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~-----L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 402 (743)
+.++.|++.+|.+... +..+..... +..++++.|.+. ..+..|..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 4577888888877743 322222222 222334444444 55778888999999999999998 455566689999
Q ss_pred CEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccc
Q 041683 403 EVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD 482 (743)
Q Consensus 403 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 482 (743)
++|+|++|.++ .+|..+. .+++|++|+|++|.++ .+|..|..+++|++|+|++|.+. .+|..|..++.|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L------- 318 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL------- 318 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC-------
T ss_pred CEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc-------
Confidence 99999999998 8887775 7999999999999999 67888999999999999999987 677777776664
Q ss_pred hhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCC-CCEEeCCCCcCcccCCC
Q 041683 483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQG-LQSLNLSHNLLTGRIPD 561 (743)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~ 561 (743)
+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|.
T Consensus 319 ---------------------------------------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 319 ---------------------------------------QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp ---------------------------------------CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred ---------------------------------------cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 88999999999888888765432 23478999999988776
Q ss_pred CCCCCCCccEEECcCC--------cCCCCCCccccCcCCCCeeeCcCCcccccC
Q 041683 562 NIGVMRSIESLDLSAN--------QLSGQIPQSMSNLSFLNHLNLSNNNLVGKI 607 (743)
Q Consensus 562 ~~~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 607 (743)
. |+.|++++| .+.+..+..+..+..++...+++|-+.+..
T Consensus 360 ~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~ 407 (727)
T 4b8c_D 360 E------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY 407 (727)
T ss_dssp C-----------------------------------------------CCCGGG
T ss_pred c------cceeEeecccccccccCCccccccchhhcccccceeeeecccccccc
Confidence 4 556667776 445555555666777788888888886443
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=143.36 Aligned_cols=88 Identities=28% Similarity=0.297 Sum_probs=76.7
Q ss_pred ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683 521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN 600 (743)
Q Consensus 521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 600 (743)
|+.|++++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|+++...+..|..+++|+.|++++
T Consensus 56 L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 36777777777767777788999999999999999988888899999999999999999977777899999999999999
Q ss_pred CcccccCC
Q 041683 601 NNLVGKIP 608 (743)
Q Consensus 601 N~l~~~~p 608 (743)
|++.|.+.
T Consensus 136 N~~~C~c~ 143 (193)
T 2wfh_A 136 NPLYCDCN 143 (193)
T ss_dssp SCEECSGG
T ss_pred CCeecCCc
Confidence 99998765
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.2e-15 Score=140.97 Aligned_cols=133 Identities=20% Similarity=0.219 Sum_probs=92.3
Q ss_pred cCCcEEEccCCcCc-ccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCccccccc
Q 041683 425 SILKILNLRSNKFH-GDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDA 503 (743)
Q Consensus 425 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (743)
++|+.|++++|.+. +.+|..+..+++|+.|++++|.+.+. ..+..++.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~----------------------------- 72 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPK----------------------------- 72 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSS-----------------------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCC-----------------------------
Confidence 45666666666665 45555566666777777777766543 33333333
Q ss_pred ceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccC-CCCCCCCCCccEEECcCCcCCCC
Q 041683 504 SLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRI-PDNIGVMRSIESLDLSANQLSGQ 582 (743)
Q Consensus 504 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~ 582 (743)
|++|++++|++++.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|++++.
T Consensus 73 -----------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 73 -----------------LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp -----------------CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred -----------------CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 467777777777666777777888888888888887532 26678888888888888888865
Q ss_pred CC---ccccCcCCCCeeeCcCCcccc
Q 041683 583 IP---QSMSNLSFLNHLNLSNNNLVG 605 (743)
Q Consensus 583 ~p---~~l~~l~~L~~L~ls~N~l~~ 605 (743)
.+ ..+..+++|++|++++|.+..
T Consensus 136 ~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 136 NDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp TTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHHHHHHHHhCccCcEecCCCCChhh
Confidence 55 467788888888888887764
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=2.1e-14 Score=151.53 Aligned_cols=241 Identities=12% Similarity=0.132 Sum_probs=123.9
Q ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEE
Q 041683 18 TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSF 97 (743)
Q Consensus 18 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L 97 (743)
..++.+.+.. .++.+...+|.++ +|+.+++..+ ++ .++..+|.++ +|+.+++. + .+....+.+|.+|++|+.+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp-~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFP-S-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECC-T-TCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeC-C-CccEehHHHhhCcccCCee
Confidence 4455555542 3445555555553 4666665544 43 4444455553 45666655 2 3444444555566666666
Q ss_pred EccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEcc
Q 041683 98 SMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLS 177 (743)
Q Consensus 98 ~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 177 (743)
++..|.+.......+. .. +|+.+.+..+ +......+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+
T Consensus 186 ~l~~n~l~~I~~~aF~-~~-----~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l- 255 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YA-----GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL- 255 (401)
T ss_dssp ECTTSCCSEECTTTTT-TC-----CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-
T ss_pred ecCCCcceEechhhEe-ec-----ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-
Confidence 6655555443333332 12 5556655532 44444555666666666666543 34344445555 45666665
Q ss_pred CCCCccccChhhhcCCCCCCEEECCCCcce-----eecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCC
Q 041683 178 NNKLNGTVSEIHFVNLTKLAFFRANGNSLI-----FKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISST 252 (743)
Q Consensus 178 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (743)
.+.++ .++...|.++++|+.+++.+|.+. ......|..+.+|+.+.+.. .+......+|.++.+|+.+.+..+
T Consensus 256 p~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 PNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp ETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred CCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 23343 444445666666666665555443 34445555556666666652 344444555556666666666433
Q ss_pred CCccccChhhhhhcccCceEecccCccc
Q 041683 253 RISAKIPRGFWNSIYQYFYLNISGNQIY 280 (743)
Q Consensus 253 ~i~~~~~~~~~~~l~~L~~L~l~~n~l~ 280 (743)
++ .++...|..+ +|+.+++.+|.+.
T Consensus 334 -l~-~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 334 -VT-QINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp -CC-EECTTSSSSS-CCCEEEECCSSCC
T ss_pred -cc-EEcHHhCCCC-CCCEEEEcCCCCc
Confidence 32 3444444444 5666666655443
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=3.3e-15 Score=139.33 Aligned_cols=90 Identities=20% Similarity=0.181 Sum_probs=75.4
Q ss_pred ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683 521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN 600 (743)
Q Consensus 521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 600 (743)
|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 36666777776656666678899999999999999977777788999999999999999977777778899999999999
Q ss_pred CcccccCCCC
Q 041683 601 NNLVGKIPSS 610 (743)
Q Consensus 601 N~l~~~~p~~ 610 (743)
|+++|.+|..
T Consensus 134 N~~~~~~~~l 143 (177)
T 2o6r_A 134 NPWDCSCPRI 143 (177)
T ss_dssp SCBCCCHHHH
T ss_pred CCeeccCccH
Confidence 9999887743
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=2.3e-14 Score=151.30 Aligned_cols=256 Identities=11% Similarity=0.076 Sum_probs=194.3
Q ss_pred CcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcc
Q 041683 4 NQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGK 83 (743)
Q Consensus 4 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~ 83 (743)
|.++.+-+.+|.+. +|+.+++..+ +..+...+|.++ +|+.+++.. .++ .++..+|.++++|+.++++ ++.++..
T Consensus 122 ~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~-~n~l~~I 195 (401)
T 4fdw_A 122 NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLS-KTKITKL 195 (401)
T ss_dssp TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECT-TSCCSEE
T ss_pred CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecC-CCcceEe
Confidence 45666666788885 7999999866 778888888885 699999986 666 6776689999999999998 6667666
Q ss_pred cchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccch
Q 041683 84 IPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPF 163 (743)
Q Consensus 84 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 163 (743)
...+|. +.+|+.+.+..+ +.......|..+. +|+.+++..+ +......+|.+ .+|+.+.+. +.++.+...
T Consensus 196 ~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~-----~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~ 265 (401)
T 4fdw_A 196 PASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTS-----QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASR 265 (401)
T ss_dssp CTTTTT-TCCCSEEECCTT-CCEECTTTTTTCT-----TCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTT
T ss_pred chhhEe-ecccCEEEeCCc-hheehhhHhhCCC-----CCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChh
Confidence 666676 688999998744 5544445555555 8999998874 55666667777 789999994 456657778
Q ss_pred hccCCCCCCEEEccCCCCc----cccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhc
Q 041683 164 SLGQISNLEYLDLSNNKLN----GTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 239 (743)
Q Consensus 164 ~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 239 (743)
+|.+|++|+.+++.+|.+. ..++...|.++++|+.+++.. .+.......|..+.+|+.+.+..+ +......+|.
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence 8999999999999887653 246667899999999999984 577777888888999999999654 6666777888
Q ss_pred CCCCCCEEEccCCCCccccChhhhhhc-ccCceEecccCcc
Q 041683 240 SQRELNDLDISSTRISAKIPRGFWNSI-YQYFYLNISGNQI 279 (743)
Q Consensus 240 ~l~~L~~L~l~~n~i~~~~~~~~~~~l-~~L~~L~l~~n~l 279 (743)
++ +|+.+++.+|.+.. ++...|..+ ..++.+.+..+.+
T Consensus 344 ~~-~L~~l~l~~n~~~~-l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 344 NT-GIKEVKVEGTTPPQ-VFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SS-CCCEEEECCSSCCB-CCCSSCCCSCTTCCEEEECGGGH
T ss_pred CC-CCCEEEEcCCCCcc-cccccccCCCCCccEEEeCHHHH
Confidence 88 89999999988864 444444444 4677888777653
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.5e-15 Score=137.19 Aligned_cols=129 Identities=21% Similarity=0.227 Sum_probs=97.6
Q ss_pred ccCCcEEEccCCcCc-ccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccc
Q 041683 424 FSILKILNLRSNKFH-GDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFED 502 (743)
Q Consensus 424 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (743)
.++|+.|++++|.+. +.+|..+..+++|+.|++++|.+.+. ..+..++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~---------------------------- 65 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK---------------------------- 65 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT----------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC----------------------------
Confidence 456777777777776 56666777778888888888877644 33333333
Q ss_pred cceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCccc-CCCCCCCCCCccEEECcCCcCCC
Q 041683 503 ASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGR-IPDNIGVMRSIESLDLSANQLSG 581 (743)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~ 581 (743)
|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++
T Consensus 66 ------------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 66 ------------------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp ------------------CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred ------------------CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 57888888888877787788888899999999988853 34778888899999999999887
Q ss_pred CCC---ccccCcCCCCeeeCcC
Q 041683 582 QIP---QSMSNLSFLNHLNLSN 600 (743)
Q Consensus 582 ~~p---~~l~~l~~L~~L~ls~ 600 (743)
..+ ..+..+++|+.||+++
T Consensus 128 ~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 128 LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp STTHHHHHHHHCTTCCEETTBC
T ss_pred hHHHHHHHHHHCCCcccccCCC
Confidence 665 5678888899888864
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=8.2e-15 Score=135.38 Aligned_cols=132 Identities=18% Similarity=0.208 Sum_probs=71.8
Q ss_pred CCCCEEEcCCCccc-cccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhccccccc
Q 041683 42 NDLEFLSVYSNRLQ-GNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120 (743)
Q Consensus 42 ~~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~ 120 (743)
++|++|++++|.++ +.+|. .+..+++|++|+++ ++.+++. ..+..+++|++|++++|.+.+.+|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~-~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---- 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLI-NVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP---- 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEE-SSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT----
T ss_pred ccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCc-CCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC----
Confidence 34444444444444 33443 34444455555554 3333332 3444455555555555555444444444444
Q ss_pred CCccEEEccCCcCcccc-hhhccCCCCCCEEECcCccCccccc---hhccCCCCCCEEEccCCCCc
Q 041683 121 NELESLRLGSSQIFGHL-TNQLRRFKRLNSLDLSNTILDGSIP---FSLGQISNLEYLDLSNNKLN 182 (743)
Q Consensus 121 ~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~ 182 (743)
+|++|++++|.+.+.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 96 -~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 -NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp -TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred -CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5566666666554432 2456677777777777777775443 36677777777777777765
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=7.1e-14 Score=148.41 Aligned_cols=137 Identities=8% Similarity=0.043 Sum_probs=82.3
Q ss_pred CcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCC
Q 041683 133 IFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINP 212 (743)
Q Consensus 133 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 212 (743)
++.....+|.++.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ ++ .++...|.++.+|+.+.+..+ +......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecce
Confidence 34445567778888888888643 66566677888888888888654 44 666667888888877666544 4444445
Q ss_pred CCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccC
Q 041683 213 NWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGN 277 (743)
Q Consensus 213 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n 277 (743)
.|..+...+....... ......+|.++.+|+.+.+.++.. .++...|..+.+|+.+++..+
T Consensus 135 aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT
T ss_pred eeecccccccccCccc--cccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC
Confidence 5555443333222221 123345567777777777765432 355555555666666655443
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=1.3e-14 Score=131.11 Aligned_cols=127 Identities=27% Similarity=0.362 Sum_probs=62.0
Q ss_pred CCCCEEECCCCCCC-CCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCE
Q 041683 18 TSLKYLDLSSNELN-STVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTS 96 (743)
Q Consensus 18 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~ 96 (743)
++|++|++++|.+. +..|..+..+++|++|++++|.+++ + . .+.++++|++|+++ +|.+++.+|..+.++++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~-~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~--- 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-A-NLPKLNKLKKLELS-DNRVSGGLEVLAEKCPN--- 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-T-TCCCCTTCCEEECC-SSCCCSCTHHHHHHCTT---
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-h-hhhcCCCCCEEECC-CCcccchHHHHhhhCCC---
Confidence 45555566655554 3444455555555555555555552 2 1 34555555555555 33444334444444444
Q ss_pred EEccCCcCcccchhhhhcccccccCCccEEEccCCcCccc-chhhccCCCCCCEEECcCccCccccc---hhccCCCCCC
Q 041683 97 FSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGH-LTNQLRRFKRLNSLDLSNTILDGSIP---FSLGQISNLE 172 (743)
Q Consensus 97 L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~ 172 (743)
|++|++++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 90 --------------------------L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 90 --------------------------LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp --------------------------CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred --------------------------CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 44444444444332 12345555555555555555554333 3455555555
Q ss_pred EEEcc
Q 041683 173 YLDLS 177 (743)
Q Consensus 173 ~L~L~ 177 (743)
+|+++
T Consensus 144 ~L~l~ 148 (149)
T 2je0_A 144 YLDGY 148 (149)
T ss_dssp EETTB
T ss_pred cccCC
Confidence 55554
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.8e-14 Score=136.01 Aligned_cols=128 Identities=21% Similarity=0.267 Sum_probs=95.8
Q ss_pred CEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccc
Q 041683 403 EVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD 482 (743)
Q Consensus 403 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 482 (743)
+.+++++|.+. .+|..+ .++|++|++++|.+. .+|..|.++++|+.|++++|++++..+..|.+++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L------- 80 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL------- 80 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence 45666666665 555433 246777777777776 455667777777777777777776666666655553
Q ss_pred hhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCC
Q 041683 483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN 562 (743)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 562 (743)
++|++++|++++..+..|.++++|+.|+|++|++++..+..
T Consensus 81 ---------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 121 (193)
T 2wfh_A 81 ---------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121 (193)
T ss_dssp ---------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred ---------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh
Confidence 77788888887777778889999999999999999766677
Q ss_pred CCCCCCccEEECcCCcCCC
Q 041683 563 IGVMRSIESLDLSANQLSG 581 (743)
Q Consensus 563 ~~~l~~L~~L~Ls~N~l~~ 581 (743)
|..+++|+.|++++|++..
T Consensus 122 ~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 122 FNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTTCTTCCEEECCSSCEEC
T ss_pred hhcCccccEEEeCCCCeec
Confidence 9999999999999999874
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=3.1e-14 Score=132.70 Aligned_cols=133 Identities=20% Similarity=0.163 Sum_probs=98.5
Q ss_pred CCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCcc
Q 041683 402 LEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSY 481 (743)
Q Consensus 402 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 481 (743)
.+.+++++|.+. .+|..+ .++|+.|++++|++.+..+..|..+++|++|++++|++.+..+..+..++.
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------- 77 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK------- 77 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT-------
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc-------
Confidence 356666666665 555432 356777777777777655556677777777777777777555555555444
Q ss_pred chhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCC
Q 041683 482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD 561 (743)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 561 (743)
|++|++++|++++..+..|..+++|++|++++|++++..+.
T Consensus 78 ---------------------------------------L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 118 (177)
T 2o6r_A 78 ---------------------------------------LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG 118 (177)
T ss_dssp ---------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ---------------------------------------cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence 47788888888877777788899999999999999976666
Q ss_pred CCCCCCCccEEECcCCcCCCCCC
Q 041683 562 NIGVMRSIESLDLSANQLSGQIP 584 (743)
Q Consensus 562 ~~~~l~~L~~L~Ls~N~l~~~~p 584 (743)
.+..+++|++|++++|++++..|
T Consensus 119 ~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 119 IFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhcCCcccCEEEecCCCeeccCc
Confidence 67889999999999999987554
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=4.6e-14 Score=131.36 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=52.3
Q ss_pred cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCC--CCCCCCCccEEECcCCcCCCCCCc----cccCcCCCCe
Q 041683 522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD--NIGVMRSIESLDLSANQLSGQIPQ----SMSNLSFLNH 595 (743)
Q Consensus 522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~ 595 (743)
++|++++|++++..+..|..+++|++|+|++|+++ .+|. .+..+++|+.|++++|+++ .+|. .+..+++|+.
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 44444444444333344566777777777777775 4444 5667777777777777776 3444 3667777888
Q ss_pred eeCcCCcccc
Q 041683 596 LNLSNNNLVG 605 (743)
Q Consensus 596 L~ls~N~l~~ 605 (743)
||+++|....
T Consensus 145 Ld~~~n~~~~ 154 (176)
T 1a9n_A 145 LDFQKVKLKE 154 (176)
T ss_dssp ETTEECCHHH
T ss_pred eCCCcCCHHH
Confidence 8887776653
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=8.1e-14 Score=129.67 Aligned_cols=131 Identities=17% Similarity=0.113 Sum_probs=110.8
Q ss_pred CCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEE
Q 041683 326 FSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVL 405 (743)
Q Consensus 326 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 405 (743)
.+++|++|++++|++... +......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 367899999999999954 54333344999999999999965 678999999999999999998776767899999999
Q ss_pred eCCCCcCcccCch--hHHhcccCCcEEEccCCcCcccCCc----cccCCCCccEEEccCCccc
Q 041683 406 DLGENELVGSIPS--WIGERFSILKILNLRSNKFHGDFPI----QLCGLAFLQILDVASNSLS 462 (743)
Q Consensus 406 ~Ls~n~i~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~ 462 (743)
++++|.+. .+|. .+ ..+++|+.|++++|++. ..|. .+..+++|+.||+++|.+.
T Consensus 94 ~L~~N~i~-~~~~~~~l-~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPL-ASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCC-CGGGGGGG-GGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCC-cchhhHhh-hcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999996 6775 44 47899999999999998 4555 3889999999999999876
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.7e-13 Score=126.42 Aligned_cols=90 Identities=23% Similarity=0.211 Sum_probs=81.5
Q ss_pred ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683 521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN 600 (743)
Q Consensus 521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 600 (743)
+++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 58888888888888888899999999999999999987777889999999999999999988777899999999999999
Q ss_pred CcccccCCCC
Q 041683 601 NNLVGKIPSS 610 (743)
Q Consensus 601 N~l~~~~p~~ 610 (743)
|++++.++..
T Consensus 112 N~~~c~c~~l 121 (170)
T 3g39_A 112 NPWDCACSDI 121 (170)
T ss_dssp SCBCTTBGGG
T ss_pred CCCCCCchhH
Confidence 9999987754
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=9.5e-16 Score=145.87 Aligned_cols=129 Identities=22% Similarity=0.305 Sum_probs=79.7
Q ss_pred cccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccc
Q 041683 423 RFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFED 502 (743)
Q Consensus 423 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (743)
.+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..++.
T Consensus 46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~---------------------------- 94 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT---------------------------- 94 (198)
T ss_dssp HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH----------------------------
T ss_pred cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc----------------------------
Confidence 56667777777776664 44 5666677777777777665 34433333232
Q ss_pred cceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCC-CCCCCCCCccEEECcCCcCCC
Q 041683 503 ASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIP-DNIGVMRSIESLDLSANQLSG 581 (743)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~ 581 (743)
|+.|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++
T Consensus 95 ------------------L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 95 ------------------LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp ------------------CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred ------------------CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 4667777777664 33 46667777777777777763222 356667777777777777765
Q ss_pred CCCcc----------ccCcCCCCeeeCcCCccc
Q 041683 582 QIPQS----------MSNLSFLNHLNLSNNNLV 604 (743)
Q Consensus 582 ~~p~~----------l~~l~~L~~L~ls~N~l~ 604 (743)
..|.. +..+++|+.|| +|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 155 DYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 54432 56667777766 55554
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=5.2e-13 Score=123.52 Aligned_cols=90 Identities=23% Similarity=0.231 Sum_probs=78.8
Q ss_pred ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683 521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN 600 (743)
Q Consensus 521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 600 (743)
|+.|++++|++++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 57888888888888888899999999999999999976666788999999999999999977777799999999999999
Q ss_pred CcccccCCCC
Q 041683 601 NNLVGKIPSS 610 (743)
Q Consensus 601 N~l~~~~p~~ 610 (743)
|++.+.++..
T Consensus 115 N~~~c~~~~~ 124 (174)
T 2r9u_A 115 NPWDCECRDI 124 (174)
T ss_dssp SCBCTTBGGG
T ss_pred CCcccccccH
Confidence 9999876643
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=3.1e-15 Score=142.33 Aligned_cols=135 Identities=17% Similarity=0.235 Sum_probs=80.2
Q ss_pred CCCCCCEEECCCCCCCCCCch------hhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhcc
Q 041683 16 NLTSLKYLDLSSNELNSTVLG------WLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFG 89 (743)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~ 89 (743)
....++.++++.+.+.+..|. .|..+++|++|++++|.++ .+| .+.++++|++|+++ +|.+. .+|..+.
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~-~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLG-RNLIK-KIENLDA 90 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEE-EEEEC-SCSSHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECC-CCCcc-cccchhh
Confidence 344555555555555554444 6777777777777777776 355 46677777777777 44554 4555555
Q ss_pred CCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccch-hhccCCCCCCEEECcCccCccccc
Q 041683 90 KLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLT-NQLRRFKRLNSLDLSNTILDGSIP 162 (743)
Q Consensus 90 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~ 162 (743)
.+++|++|++++|.+++ +| .+..++ +|++|++++|.+....+ ..+..+++|++|++++|.+++..|
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~-----~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLV-----NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHH-----HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCC-----CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 56666666666666654 23 344444 56666666666644322 345566666666666666554433
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.39 E-value=3.7e-11 Score=127.39 Aligned_cols=157 Identities=7% Similarity=0.087 Sum_probs=82.1
Q ss_pred CCCCCCCCC-CCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCc---cccccCcccccCCCCCCEEEcCCCCcCCcccc
Q 041683 10 IPSRLGNLT-SLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNR---LQGNVSSLGLENLTSIKRLYLSENDELGGKIP 85 (743)
Q Consensus 10 ~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~ 85 (743)
-..+|.+++ .|+.+.+.. .++.+...+|.++++|+.+.++.|. ++ .+...+|.++.+|+.+.+. + .++....
T Consensus 55 g~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~-~-~~~~I~~ 130 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPIL-D-SVTEIDS 130 (394)
T ss_dssp CTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGG-T-TCSEECT
T ss_pred CHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccC-C-ccceehh
Confidence 345666664 477777764 3666667777777777777776553 44 5555567777777766665 2 2344445
Q ss_pred hhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhc
Q 041683 86 TSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSL 165 (743)
Q Consensus 86 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 165 (743)
.+|..+.+|+.+.+..+. .......+.... .|+.+.+..+ +......+|.. .+|+.+.+..+... ....+|
T Consensus 131 ~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~-----~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af 201 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEGV-TSVADGMFSYCY-----SLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAF 201 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCT-----TCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTT
T ss_pred hhhhhhccccccccccee-eeecccceeccc-----ccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchh
Confidence 566667777776665321 111112222222 4555555433 22222333332 34555555443322 334455
Q ss_pred cCCCCCCEEEccCC
Q 041683 166 GQISNLEYLDLSNN 179 (743)
Q Consensus 166 ~~l~~L~~L~L~~n 179 (743)
.++.+++......+
T Consensus 202 ~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 202 SECFALSTITSDSE 215 (394)
T ss_dssp TTCTTCCEEEECCS
T ss_pred hhccccceeccccc
Confidence 55555555544433
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=3e-12 Score=117.99 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=76.7
Q ss_pred CcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCccccccccee
Q 041683 427 LKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLV 506 (743)
Q Consensus 427 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (743)
.+.+++++|.+. .+|..+ .++|++|++++|++.+..|..|..++.|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L------------------------------- 56 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQL------------------------------- 56 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccC-------------------------------
Confidence 445556666555 244333 2556666666666665555555554443
Q ss_pred eeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCC
Q 041683 507 MKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQI 583 (743)
Q Consensus 507 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 583 (743)
++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+++...
T Consensus 57 ---------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 57 ---------------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp ---------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ---------------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 66777777777666667888999999999999999777777999999999999999998543
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=8.1e-11 Score=124.75 Aligned_cols=337 Identities=12% Similarity=0.102 Sum_probs=170.5
Q ss_pred ccCcccccCCC-CCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcc
Q 041683 57 NVSSLGLENLT-SIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFG 135 (743)
Q Consensus 57 ~~~~~~~~~l~-~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~ 135 (743)
.|++.+|.++. .|+.+.+. . .++.....+|.++++|+.+.+..+.-. .++ .
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP-~-svt~Ig~~AF~~C~~L~~i~~~~n~p~----------------~l~----------~ 104 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIP-D-TVTEIGSNAFYNCTSLKRVTIQDNKPS----------------CVK----------K 104 (394)
T ss_dssp EECTTTTTTCCSCCCEEEEC-T-TCCEECTTTTTTCTTCCEEEEGGGCCC----------------CCC----------E
T ss_pred EcCHhhccCCCCcCEEEEEC-C-CeeEEhHHHhhCCccCceEeecCCCCC----------------eee----------E
Confidence 56666777774 58888887 3 355566777888888888877654211 122 1
Q ss_pred cchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCC
Q 041683 136 HLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWV 215 (743)
Q Consensus 136 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 215 (743)
....+|..+.+|+.+.+..+ ++.+...+|..+.+|+.+.+..+ +. .+....|..+.+|+.+.+..+ +.......|.
T Consensus 105 Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~ 180 (394)
T 4gt6_A 105 IGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT 180 (394)
T ss_dssp ECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred echhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEecccccc
Confidence 22334555566665555443 33344456666666666666533 22 445556666666666666544 3333333333
Q ss_pred CCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCccc
Q 041683 216 PPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLIT 295 (743)
Q Consensus 216 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 295 (743)
...|+.+.+..+-. .....+|..+.+++.......... .....++................
T Consensus 181 -~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------- 241 (394)
T 4gt6_A 181 -GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQ---------------- 241 (394)
T ss_dssp -TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTT----------------
T ss_pred -ccceeEEEECCccc-ccccchhhhccccceecccccccc-cccceeecccccccccccccccc----------------
Confidence 24566665544322 233445556666666655544332 11111111100000000000000
Q ss_pred CCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCC
Q 041683 296 TPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTL 375 (743)
Q Consensus 296 ~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 375 (743)
.....+.+.. .+...-...+..+..|+.+.+.++... +...+|.+++.|+.+.+. +.++.+...+|.++
T Consensus 242 ----~~~~~~~ip~-----~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c 310 (394)
T 4gt6_A 242 ----REDPAFKIPN-----GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGC 310 (394)
T ss_dssp ----CCCSEEECCT-----TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTC
T ss_pred ----cccceEEcCC-----cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCC
Confidence 0000000000 000000122344666777777655433 555667777777777775 34554556677777
Q ss_pred CCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEE
Q 041683 376 SSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILD 455 (743)
Q Consensus 376 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 455 (743)
.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++ .+....|.++++|+.+++.++.... ..+....+|+.+.
T Consensus 311 ~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 311 ISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLP 384 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred CCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence 77777777654 55556667777777777777544 44 5666666667777777777665431 2455566677666
Q ss_pred ccCCcc
Q 041683 456 VASNSL 461 (743)
Q Consensus 456 Ls~N~l 461 (743)
+..+.+
T Consensus 385 i~~~~~ 390 (394)
T 4gt6_A 385 VAPGSI 390 (394)
T ss_dssp ------
T ss_pred eCCCCE
Confidence 665543
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=6.4e-12 Score=116.16 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=49.2
Q ss_pred cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCC
Q 041683 522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQ 582 (743)
Q Consensus 522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 582 (743)
++|+|++|++++..+..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|++...
T Consensus 60 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 60 QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 6666666666655555678889999999999999966666699999999999999999843
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=6.9e-14 Score=146.15 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=16.7
Q ss_pred CCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCc
Q 041683 400 SSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFH 438 (743)
Q Consensus 400 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~ 438 (743)
++|++|+|++|.+.+.....+...+++|+.|+|++|.+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 345555555555432222222223344455555555444
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=7.4e-13 Score=138.31 Aligned_cols=164 Identities=15% Similarity=0.138 Sum_probs=80.6
Q ss_pred CCCCEEEcCCCccccccCccccc-----CCCCCCEEEcCCCCcCCcccchhc-cCCCCCCEEEccCCcCcccchhhhhcc
Q 041683 42 NDLEFLSVYSNRLQGNVSSLGLE-----NLTSIKRLYLSENDELGGKIPTSF-GKLCKLTSFSMRFTKLSQDISEILGIF 115 (743)
Q Consensus 42 ~~L~~L~Ls~n~l~~~~~~~~~~-----~l~~L~~L~Ls~~~~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l 115 (743)
++|++|+|++|.++..... .+. ..++|++|+|+ +|.+.......+ ..+++|++|++++|.++......+...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~-~l~~~L~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCT-VVAAVLGSGRHALDEVNLA-SCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHH-HHHHHHSSCSSCEEEEECT-TCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHH-HHHHHHhhCCCCceEEEec-CCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4455556655555421111 111 12456666666 334433222222 223455666666666554333333221
Q ss_pred cccccCCccEEEccCCcCccc----chhhccCCCCCCEEECcCccCcccc----chhccCCCCCCEEEccCCCCccc---
Q 041683 116 SACVANELESLRLGSSQIFGH----LTNQLRRFKRLNSLDLSNTILDGSI----PFSLGQISNLEYLDLSNNKLNGT--- 184 (743)
Q Consensus 116 ~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~--- 184 (743)
-.....+|++|+|++|.+... ++..+..+++|++|+|++|.+++.. +..+...++|++|+|++|.++..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 101112566666666666432 2334455666666666666665432 34455566677777777766521
Q ss_pred -cChhhhcCCCCCCEEECCCCccee
Q 041683 185 -VSEIHFVNLTKLAFFRANGNSLIF 208 (743)
Q Consensus 185 -~~~~~~~~l~~L~~L~l~~n~~~~ 208 (743)
+.. .+...++|++|++++|.+..
T Consensus 230 ~l~~-~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 230 ALAR-AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHH-HHHHCSSCCEEECTTSSCCH
T ss_pred HHHH-HHHhCCCCCEEeccCCCCCH
Confidence 111 23445667777777776643
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=3.9e-11 Score=124.97 Aligned_cols=103 Identities=22% Similarity=0.200 Sum_probs=62.9
Q ss_pred EEEccCC-cCcccCCccccCCCCccEEEccC-CccccccCccccccccccccCccchhhhhhccccCCCCccccccccee
Q 041683 429 ILNLRSN-KFHGDFPIQLCGLAFLQILDVAS-NSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLV 506 (743)
Q Consensus 429 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (743)
.++++++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|.+++.|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L------------------------------- 58 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL------------------------------- 58 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC-------------------------------
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC-------------------------------
Confidence 4566666 666 3555 66666777777764 66665555555554443
Q ss_pred eeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCC
Q 041683 507 MKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLS 580 (743)
Q Consensus 507 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (743)
+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+.|+|++|.+.
T Consensus 59 ---------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 59 ---------------RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ---------------SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ---------------CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6666666666666666666666666666666666644444444444 666666666665
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=7.8e-11 Score=122.69 Aligned_cols=68 Identities=18% Similarity=0.117 Sum_probs=38.9
Q ss_pred EEeCCCC-cCcccCchhHHhcccCCcEEEccC-CcCcccCCccccCCCCccEEEccCCccccccCcccccccc
Q 041683 404 VLDLGEN-ELVGSIPSWIGERFSILKILNLRS-NKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSA 474 (743)
Q Consensus 404 ~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 474 (743)
.++++++ .++ .+|. +. .+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|+|++..|..|.+++.
T Consensus 12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 81 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81 (347)
T ss_dssp CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcC
Confidence 3455555 555 4555 32 455666666664 6666555555666666666666666666555555555444
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.12 E-value=7.1e-09 Score=109.23 Aligned_cols=312 Identities=10% Similarity=0.060 Sum_probs=184.7
Q ss_pred CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683 122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA 201 (743)
Q Consensus 122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 201 (743)
+|+.+.+.. .++.....+|.++.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++ .+...+|.+. +|+.+.+
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L~~i~l 120 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DLDDFEF 120 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CCSEEEC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-CcccccC
Confidence 566666653 344555667888888888888654 555666677776 6777776543 44 5666567664 6888887
Q ss_pred CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcccc
Q 041683 202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYG 281 (743)
Q Consensus 202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~ 281 (743)
..+ +.......|... .++.+.+..+ +.......+..+..++.+.+..+............ .........
T Consensus 121 p~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------ 189 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY--NKNKTILES------ 189 (379)
T ss_dssp CTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE--ETTSSEEEE------
T ss_pred CCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceec--ccccceecc------
Confidence 765 333333344333 4555555432 22334445666677777766654432111110000 000000000
Q ss_pred CCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCC
Q 041683 282 GIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH 361 (743)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 361 (743)
.+.. .... .+.+.. .........+..+.+++.+.+..+ +..+...+|.++..|+.+.+..
T Consensus 190 -~~~~--~~~~-----------~~~~~~-----~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~ 249 (379)
T 4h09_A 190 -YPAA--KTGT-----------EFTIPS-----TVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPK 249 (379)
T ss_dssp -CCTT--CCCS-----------EEECCT-----TCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECT
T ss_pred -cccc--cccc-----------cccccc-----ceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCC
Confidence 0000 0000 000000 000001122334567888877654 4445667788888888888876
Q ss_pred CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccC
Q 041683 362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDF 441 (743)
Q Consensus 362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 441 (743)
+ ++.+...+|.++.+|+.+.+..+ +..+...+|.+|++|+.+.+.++.++ .++...|.++.+|+.+.+..+ ++.+-
T Consensus 250 ~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 250 N-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp T-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred C-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEH
Confidence 5 55566678888888888888654 55566678888889999988888776 677777778888998888754 55556
Q ss_pred CccccCCCCccEEEccCCccccccCccccccccc
Q 041683 442 PIQLCGLAFLQILDVASNSLSGTIPRCINNLSAM 475 (743)
Q Consensus 442 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 475 (743)
..+|.++.+|+.+.+..+ +...-..+|.++..+
T Consensus 326 ~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 326 VYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred HHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 668888888888888654 554445567666543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.10 E-value=1e-08 Score=108.06 Aligned_cols=278 Identities=10% Similarity=0.064 Sum_probs=156.6
Q ss_pred hccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCcc
Q 041683 140 QLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQ 219 (743)
Q Consensus 140 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 219 (743)
++....+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++ .+...+|.++ +|+.+.+..+ +.......|.. .+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 456667899998865 466566778999999999999654 65 7777788887 6777777654 44454555544 37
Q ss_pred ccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCC
Q 041683 220 LTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSD 299 (743)
Q Consensus 220 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 299 (743)
|+.+.+..+- .......|... +++.+.+..+ ++ .+....+..+..++.+.+..+........
T Consensus 115 L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~-------------- 176 (379)
T 4h09_A 115 LDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAEN-------------- 176 (379)
T ss_dssp CSEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEET--------------
T ss_pred cccccCCCcc-ccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeeccc--------------
Confidence 8888876542 22333334443 4666555443 22 23333444455666555554332100000
Q ss_pred CCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCc
Q 041683 300 LLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLL 379 (743)
Q Consensus 300 l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 379 (743)
....... ......+.....+..+.+...... .....+..+..|+.+.+..+ +..+...+|.++..|+
T Consensus 177 ----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~ 243 (379)
T 4h09_A 177 ----YVLYNKN-------KTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALD 243 (379)
T ss_dssp ----TEEEETT-------SSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCC
T ss_pred ----ceecccc-------cceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccce
Confidence 0000000 000111222344555555443322 34455666667777777544 3334555666777777
Q ss_pred EEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEcc
Q 041683 380 SLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVA 457 (743)
Q Consensus 380 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 457 (743)
.+.+..+ ++.+...+|.++.+|+.+.+..+ +. .++...+.++.+|+.+.+.++.+..+...+|.++.+|+.+++.
T Consensus 244 ~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 244 EIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp EEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred EEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 7777654 44455566777777777776543 33 4555555566666666666666665555566666666666654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=2.7e-09 Score=110.23 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=43.1
Q ss_pred ccccEEEccCCcCcccCchhhc---ccCCCCEEeCCCCcCccc----CCCCCCCCCCccEEECcCCcCCCCCCccccC-c
Q 041683 519 NLVRSIDVSKNIFSGEIPVEVT---NLQGLQSLNLSHNLLTGR----IPDNIGVMRSIESLDLSANQLSGQIPQSMSN-L 590 (743)
Q Consensus 519 ~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l 590 (743)
+.|+.|++++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++...-..+.. +
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 3345555555555433222222 356677777777766642 3333445667777777777665432222221 1
Q ss_pred CCCCeeeCcCCc
Q 041683 591 SFLNHLNLSNNN 602 (743)
Q Consensus 591 ~~L~~L~ls~N~ 602 (743)
...+++++++
T Consensus 332 --g~~~~~~~~~ 341 (362)
T 2ra8_A 332 --PMKIDVSDSQ 341 (362)
T ss_dssp --CSEEECCSBC
T ss_pred --CCEEEecCCc
Confidence 2456777665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=6e-09 Score=107.63 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=36.6
Q ss_pred CCCCCCEEECcCccCccccchhcc---CCCCCCEEEccCCCCccc----cChhhhcCCCCCCEEECCCCcce
Q 041683 143 RFKRLNSLDLSNTILDGSIPFSLG---QISNLEYLDLSNNKLNGT----VSEIHFVNLTKLAFFRANGNSLI 207 (743)
Q Consensus 143 ~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~ 207 (743)
.+++|++|+|++|.+.+..+..+. .+++|++|+|+.|.+.+. +.. .+.++++|+.|++++|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~-~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD-HVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT-THHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh-hcccCCcceEEECCCCcCC
Confidence 356777777776666543333332 356677777777766532 111 2244566777777776654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=3.5e-07 Score=84.96 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=27.1
Q ss_pred CccEEEccCCcCccc----chhhccCCCCCCEEEC--cCccCcccc----chhccCCCCCCEEEccCCCC
Q 041683 122 ELESLRLGSSQIFGH----LTNQLRRFKRLNSLDL--SNTILDGSI----PFSLGQISNLEYLDLSNNKL 181 (743)
Q Consensus 122 ~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L--s~n~l~~~~----~~~~~~l~~L~~L~L~~n~l 181 (743)
.|++|+|++|.+... +...+...++|++|+| ++|.++... ...+...++|++|++++|.+
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 444445444444322 2233444455555555 445554321 22333345555555555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.36 E-value=3.3e-07 Score=85.17 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=73.7
Q ss_pred chhhcCCCCCCEEEcCCC-ccccc----cCcccccCCCCCCEEEcCCCCcCCcc----cchhccCCCCCCEEEccCCcCc
Q 041683 35 LGWLSKVNDLEFLSVYSN-RLQGN----VSSLGLENLTSIKRLYLSENDELGGK----IPTSFGKLCKLTSFSMRFTKLS 105 (743)
Q Consensus 35 ~~~~~~l~~L~~L~Ls~n-~l~~~----~~~~~~~~l~~L~~L~Ls~~~~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 105 (743)
...+...+.|++|+|++| .+... +.. .+...++|++|+|+ +|.+... +..++...++|++|+|++|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls-~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIV-GTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECT-TSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECc-CCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 344566777777777777 66531 222 45566777777777 4455432 2344556677888888888776
Q ss_pred ccc----hhhhhcccccccCCccEEEc--cCCcCccc----chhhccCCCCCCEEECcCccCc
Q 041683 106 QDI----SEILGIFSACVANELESLRL--GSSQIFGH----LTNQLRRFKRLNSLDLSNTILD 158 (743)
Q Consensus 106 ~~~----~~~l~~l~~~~~~~L~~L~L--~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~ 158 (743)
..- ...+.... .|++|+| ++|.+... +...+...++|++|+|++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~-----~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNT-----SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCS-----SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCC-----CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 542 22233223 6888888 77877543 3345566788888998888875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=1.3e-07 Score=92.41 Aligned_cols=89 Identities=27% Similarity=0.325 Sum_probs=66.7
Q ss_pred ccccE--EEccCCcCc---ccCchhhcccCCCCEEeCCCCcCcc--cCCCCCCCCCCccEEECcCCcCCCCCCccccCcC
Q 041683 519 NLVRS--IDVSKNIFS---GEIPVEVTNLQGLQSLNLSHNLLTG--RIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLS 591 (743)
Q Consensus 519 ~~L~~--L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 591 (743)
+.|.. ++++.|+.. ...+....++++|++|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+.
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~ 218 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK 218 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence 33444 677777433 2223333678999999999999997 4556677899999999999999965 3344444
Q ss_pred --CCCeeeCcCCcccccCCC
Q 041683 592 --FLNHLNLSNNNLVGKIPS 609 (743)
Q Consensus 592 --~L~~L~ls~N~l~~~~p~ 609 (743)
+|+.|+|++|++++.+|.
T Consensus 219 ~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 219 GLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp TSCCSEEECTTSTTGGGCSS
T ss_pred cCCcceEEccCCcCccccCc
Confidence 999999999999988874
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=7.1e-07 Score=87.09 Aligned_cols=79 Identities=23% Similarity=0.281 Sum_probs=64.4
Q ss_pred ccccccEEEccCCcCcc--cCchhhcccCCCCEEeCCCCcCcccCCCCCCCCC--CccEEECcCCcCCCCCCc-------
Q 041683 517 ILNLVRSIDVSKNIFSG--EIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMR--SIESLDLSANQLSGQIPQ------- 585 (743)
Q Consensus 517 ~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~------- 585 (743)
.++.|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++. +.+..+. +|++|+|++|.+.+..|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 47789999999999997 4557788999999999999999964 3344444 999999999999976663
Q ss_pred cccCcCCCCeee
Q 041683 586 SMSNLSFLNHLN 597 (743)
Q Consensus 586 ~l~~l~~L~~L~ 597 (743)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356678888876
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=8e-07 Score=80.19 Aligned_cols=85 Identities=9% Similarity=0.099 Sum_probs=53.7
Q ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCc-cccccCcccccCC----CCCCEEEcCCCCcCCcccchhccCCC
Q 041683 18 TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNR-LQGNVSSLGLENL----TSIKRLYLSENDELGGKIPTSFGKLC 92 (743)
Q Consensus 18 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l----~~L~~L~Ls~~~~l~~~~~~~l~~l~ 92 (743)
..|++||++++.|+......+.++++|++|+|++|. +++.--. .+..+ ++|++|+|+++..+++.--..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 357777777777766655666777777777777774 5432111 23443 35777777755566665555666677
Q ss_pred CCCEEEccCCc
Q 041683 93 KLTSFSMRFTK 103 (743)
Q Consensus 93 ~L~~L~L~~n~ 103 (743)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777664
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=5.6e-06 Score=74.64 Aligned_cols=85 Identities=9% Similarity=0.051 Sum_probs=49.4
Q ss_pred CCCcEEEccCccccccCCcccCCCCCCCEEeCCCCc-CcccCchhHHh---cccCCcEEEccCCc-CcccCCccccCCCC
Q 041683 376 SSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENE-LVGSIPSWIGE---RFSILKILNLRSNK-FHGDFPIQLCGLAF 450 (743)
Q Consensus 376 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~---~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 450 (743)
..|++|++++|.++...-..+..+++|++|+|++|. +++..-..+.. .+++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666554444455666677777777764 44322222321 02357777777764 55332234566778
Q ss_pred ccEEEccCCc
Q 041683 451 LQILDVASNS 460 (743)
Q Consensus 451 L~~L~Ls~N~ 460 (743)
|+.|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888775
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.34 E-value=0.00038 Score=59.79 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=43.7
Q ss_pred EEeCCCCcCc-ccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCC
Q 041683 547 SLNLSHNLLT-GRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIP 608 (743)
Q Consensus 547 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 608 (743)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.+..-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 6677777775 35555432 468888888888887666778888888888888888877543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.17 E-value=0.00095 Score=61.28 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=20.2
Q ss_pred CCCCCCEEEcCCCCcCCc----ccchhccCCCCCCEEEccCCcCcc
Q 041683 65 NLTSIKRLYLSENDELGG----KIPTSFGKLCKLTSFSMRFTKLSQ 106 (743)
Q Consensus 65 ~l~~L~~L~Ls~~~~l~~----~~~~~l~~l~~L~~L~L~~n~l~~ 106 (743)
+-+.|++|+|++++.+.. .+..++..-+.|+.|+|++|.+..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd 84 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD 84 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh
Confidence 345555566652223332 123344455555666665555543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.11 E-value=0.00018 Score=66.17 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=29.2
Q ss_pred CCCCCCEEeCCCCcCcccCchhHHhc---ccCCcEEEccCCc---Ccc----cCCccccCCCCccEEEccCCccc
Q 041683 398 NFSSLEVLDLGENELVGSIPSWIGER---FSILKILNLRSNK---FHG----DFPIQLCGLAFLQILDVASNSLS 462 (743)
Q Consensus 398 ~l~~L~~L~Ls~n~i~~~~~~~~~~~---l~~L~~L~L~~n~---l~~----~~~~~~~~l~~L~~L~Ls~N~l~ 462 (743)
.-+.|++|+|++|.|.+..-..+.+. -+.|++|+|++|. +.. .+...+..-+.|+.|+++.|.+.
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 33455555555555543222222221 2245555555432 221 12223444566677777666543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.62 E-value=0.0028 Score=54.30 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=47.7
Q ss_pred cEEEccCCcCc-ccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCC
Q 041683 522 RSIDVSKNIFS-GEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLS 580 (743)
Q Consensus 522 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (743)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...++.|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 57899999987 35564432 47999999999999777778999999999999999986
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.29 E-value=7.9 Score=30.68 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=24.6
Q ss_pred CCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcC
Q 041683 29 ELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLS 75 (743)
Q Consensus 29 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 75 (743)
.++.+...+|.+|.+|+.+.+..+ ++ .|...+|.++.+|+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEEC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEc
Confidence 344555555666666666666543 33 4444456666666666555
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.01 E-value=4.3 Score=32.24 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=42.9
Q ss_pred CCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCc
Q 041683 3 GNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNR 53 (743)
Q Consensus 3 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 53 (743)
+..++.+-..+|.++++|+.+.+..+ ++.+...+|.+|.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 45677777889999999999999865 678888999999999999998653
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=70.54 E-value=3.9 Score=25.70 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=11.0
Q ss_pred hhhhhhhhHHHHHHHHhhh
Q 041683 662 LYISMALGFVVGFWCFIGS 680 (743)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~ 680 (743)
.++++.++.++++.++++.
T Consensus 12 aIAGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHHHH
Confidence 4566666666665544433
No 168
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=63.94 E-value=2.4 Score=27.57 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=7.8
Q ss_pred HHHHHHHHhhhhhhccchh
Q 041683 670 FVVGFWCFIGSLLINRRWR 688 (743)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~ 688 (743)
+++.++++++.++|.+|++
T Consensus 21 v~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhhhH
Confidence 3333333344444444433
No 169
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=62.66 E-value=4.5 Score=26.24 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=12.1
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhccchh
Q 041683 662 LYISMALGFVVGFWCFIGSLLINRRWR 688 (743)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (743)
.+++..+|+++.++++++.++|.||++
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHhheehhh
Confidence 345555564433333344444444443
No 170
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=62.63 E-value=2.6 Score=27.34 Aligned_cols=19 Identities=11% Similarity=-0.064 Sum_probs=7.7
Q ss_pred HHHHHHHHhhhhhhccchh
Q 041683 670 FVVGFWCFIGSLLINRRWR 688 (743)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~ 688 (743)
+++.++++.+.++|.+|++
T Consensus 20 v~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 3333333344444444443
No 171
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=61.03 E-value=5.1 Score=23.86 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=16.1
Q ss_pred hhhhhhHHHHHHHHhhhhhhccchh
Q 041683 664 ISMALGFVVGFWCFIGSLLINRRWR 688 (743)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (743)
+.+++|.+++|.+....++||+.+|
T Consensus 10 lt~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEEEcccc
Confidence 3455666777777667777776554
No 172
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=35.35 E-value=15 Score=22.48 Aligned_cols=7 Identities=0% Similarity=-0.149 Sum_probs=2.6
Q ss_pred hhhhhcc
Q 041683 679 GSLLINR 685 (743)
Q Consensus 679 ~~~~~~~ 685 (743)
++.+|.|
T Consensus 26 ~~~~~iR 32 (35)
T 1iij_A 26 VVGILIK 32 (35)
T ss_dssp TTTHHHH
T ss_pred HhheEEe
Confidence 3333333
No 173
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=24.22 E-value=31 Score=24.35 Aligned_cols=14 Identities=50% Similarity=0.845 Sum_probs=6.5
Q ss_pred hhhhHHHHHHHHhh
Q 041683 666 MALGFVVGFWCFIG 679 (743)
Q Consensus 666 ~~~~~~~~~~~~~~ 679 (743)
+++|.+++++++++
T Consensus 12 ivlGg~~~lll~~g 25 (70)
T 2klu_A 12 IVLGGVAGLLLFIG 25 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHH
Confidence 34455555544433
Done!