Query 041684
Match_columns 100
No_of_seqs 109 out of 222
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 16:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041684.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041684hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g47a1 g.39.1.3 (A:1-35) Pinc 43.6 2.4 0.00017 22.7 0.1 8 52-59 15-22 (35)
2 d1tuaa1 d.51.1.1 (A:1-84) Hypo 29.4 10 0.00075 22.7 1.4 24 40-65 58-82 (84)
3 d1sfxa_ a.4.5.50 (A:) Hypothet 28.1 21 0.0015 21.2 2.7 16 52-67 16-31 (109)
4 d2hzaa1 a.43.1.3 (A:1-48) Nick 23.4 21 0.0015 19.6 1.8 17 36-52 24-40 (48)
5 d2bj7a1 a.43.1.3 (A:1-50) Nick 23.2 17 0.0013 20.2 1.5 16 37-52 27-42 (50)
6 d3ctaa2 b.43.5.2 (A:90-220) CT 21.6 15 0.0011 24.1 1.1 16 44-59 26-41 (131)
7 d2vbua1 b.43.5.2 (A:2-132) CTP 20.1 17 0.0012 23.8 1.1 15 44-58 26-40 (131)
8 d3bqoa1 a.146.1.1 (A:62-265) T 19.9 51 0.0037 23.1 3.8 49 43-99 110-158 (204)
9 d2hkja2 d.14.1.3 (A:307-470) T 18.3 44 0.0032 22.7 3.1 26 71-96 135-160 (164)
10 d1oywa2 c.37.1.19 (A:1-206) Re 16.4 45 0.0033 20.8 2.6 27 43-69 12-41 (206)
No 1
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.59 E-value=2.4 Score=22.73 Aligned_cols=8 Identities=63% Similarity=1.120 Sum_probs=6.9
Q ss_pred hccchhHH
Q 041684 52 AGFTPYEK 59 (100)
Q Consensus 52 ~GfaPYEr 59 (100)
.||+|.|+
T Consensus 15 ~gF~p~Ek 22 (35)
T d1g47a1 15 GGFAPAEK 22 (35)
T ss_dssp CBCCSTTT
T ss_pred cCCCchHH
Confidence 58999997
No 2
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=29.43 E-value=10 Score=22.71 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=17.4
Q ss_pred chhHHHHHHhhh-hccchhHHHHHHHh
Q 041684 40 RVHFERNVIREV-AGFTPYEKTITELL 65 (100)
Q Consensus 40 r~kfvr~vIrEv-~GfaPYErr~mELl 65 (100)
-..-++++|+++ -||+|= .++.||
T Consensus 58 a~~~a~~iI~aI~rGf~Pe--~a~~ll 82 (84)
T d1tuaa1 58 NLMKAAEVVKAISLGFPPE--KAFRLL 82 (84)
T ss_dssp HHHHHHHHHHHHHHTCCHH--HHGGGG
T ss_pred HHHHHHHHHHHHhCCCChH--HHHHhc
Confidence 345689999999 499994 355555
No 3
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=28.07 E-value=21 Score=21.23 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=14.0
Q ss_pred hccchhHHHHHHHhhc
Q 041684 52 AGFTPYEKTITELLKV 67 (100)
Q Consensus 52 ~GfaPYErr~mELlk~ 67 (100)
.||.|+|.+++..|-.
T Consensus 16 lGlt~~e~~v~~~L~~ 31 (109)
T d1sfxa_ 16 LSFKPSDVRIYSLLLE 31 (109)
T ss_dssp TCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999887753
No 4
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.36 E-value=21 Score=19.61 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=13.8
Q ss_pred CCCcchhHHHHHHhhhh
Q 041684 36 KTSKRVHFERNVIREVA 52 (100)
Q Consensus 36 ~~tkr~kfvr~vIrEv~ 52 (100)
.-+-|..+|||+||+..
T Consensus 24 gy~nRSEaIRdliR~~l 40 (48)
T d2hzaa1 24 GYNNRSEAIRDILRSAL 40 (48)
T ss_dssp TCCSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 35678999999999853
No 5
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.21 E-value=17 Score=20.16 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.2
Q ss_pred CCcchhHHHHHHhhhh
Q 041684 37 TSKRVHFERNVIREVA 52 (100)
Q Consensus 37 ~tkr~kfvr~vIrEv~ 52 (100)
-+-|..++||+||+..
T Consensus 27 y~nRSEaIRdliR~~l 42 (50)
T d2bj7a1 27 YENRSEAIRDLIRDFI 42 (50)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4678999999999853
No 6
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk {Thermoplasma acidophilum [TaxId: 2303]}
Probab=21.60 E-value=15 Score=24.13 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.2
Q ss_pred HHHHHhhhhccchhHH
Q 041684 44 ERNVIREVAGFTPYEK 59 (100)
Q Consensus 44 vr~vIrEv~GfaPYEr 59 (100)
.++-++|..||.||.=
T Consensus 26 Y~~qF~~~LG~~P~PG 41 (131)
T d3ctaa2 26 YIIQFQEKLGIIPYLG 41 (131)
T ss_dssp CHHHHHHHSCSCCCC-
T ss_pred HHHHHHHHhCCCCCCC
Confidence 4778899999999964
No 7
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=20.12 E-value=17 Score=23.80 Aligned_cols=15 Identities=33% Similarity=0.961 Sum_probs=13.2
Q ss_pred HHHHHhhhhccchhH
Q 041684 44 ERNVIREVAGFTPYE 58 (100)
Q Consensus 44 vr~vIrEv~GfaPYE 58 (100)
.++-++|..||.||.
T Consensus 26 Y~~qF~~~LG~~P~P 40 (131)
T d2vbua1 26 YKEIFKKILGFEPYE 40 (131)
T ss_dssp HHHHHHHHHSSCCCS
T ss_pred HHHHHHHHhCCCCCC
Confidence 578899999999995
No 8
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.90 E-value=51 Score=23.09 Aligned_cols=49 Identities=14% Similarity=0.031 Sum_probs=32.8
Q ss_pred HHHHHHhhhhccchhHHHHHHHhhcchhhHHHHHHHHhhchhhhhHhHHHHHhhhhh
Q 041684 43 FERNVIREVAGFTPYEKTITELLKVDEDKRALKAAKRKLSTHEGTKTKCEEMSNASA 99 (100)
Q Consensus 43 fvr~vIrEv~GfaPYErr~mELlk~skdKrAlKf~KKRlGth~RAKrK~eel~~vl~ 99 (100)
-++++|+|.+ ++=.++.+..+.|-..+++=.|.--.-+..+.+|..|+.
T Consensus 110 ~i~~lik~qA--------V~vCmekg~fk~A~eilkr~f~~~~~~~~lr~~L~~iI~ 158 (204)
T d3bqoa1 110 EIQNLIKIQA--------IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 158 (204)
T ss_dssp HHHHHHHHHH--------HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3566666654 555677899999999999977765555667778877764
No 9
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=18.34 E-value=44 Score=22.65 Aligned_cols=26 Identities=35% Similarity=0.312 Sum_probs=22.2
Q ss_pred hHHHHHHHHhhchhhhhHhHHHHHhh
Q 041684 71 KRALKAAKRKLSTHEGTKTKCEEMSN 96 (100)
Q Consensus 71 KrAlKf~KKRlGth~RAKrK~eel~~ 96 (100)
+.||..+=++|.+|.+.++|.++...
T Consensus 135 rlAl~~~~R~L~~~l~kk~k~~~~~~ 160 (164)
T d2hkja2 135 KNALMEVARKLKQYLSEKRKEQEAKK 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999998888777653
No 10
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=16.40 E-value=45 Score=20.82 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=20.6
Q ss_pred HHHHHHhhhhcc---chhHHHHHHHhhcch
Q 041684 43 FERNVIREVAGF---TPYEKTITELLKVDE 69 (100)
Q Consensus 43 fvr~vIrEv~Gf---aPYErr~mELlk~sk 69 (100)
-++++++|..|| .||-..+++.+-.++
T Consensus 12 ~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~ 41 (206)
T d1oywa2 12 GAKQVLQETFGYQQFRPGQEEIIDTVLSGR 41 (206)
T ss_dssp HHHHHHHHTTCCSSCCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCC
Confidence 378999999865 588888888766443
Done!