Query 041686
Match_columns 325
No_of_seqs 131 out of 180
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 16:23:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_B Cytochrome C oxidase po 51.3 6.4 0.00022 35.6 2.0 17 161-179 144-160 (227)
2 1fft_B Ubiquinol oxidase; elec 47.3 11 0.00038 35.9 3.1 16 161-178 155-170 (315)
3 2yev_B Cytochrome C oxidase su 33.7 13 0.00044 35.1 0.0 17 161-179 145-161 (337)
4 2gsm_B Cytochrome C oxidase su 27.0 25 0.00085 32.4 1.8 13 167-179 179-191 (262)
5 2b5b_A Defensin; antibiotic; N 26.8 22 0.00076 23.5 1.0 11 212-222 1-11 (36)
6 3s8f_B Cytochrome C oxidase su 16.8 58 0.002 28.1 1.9 9 181-189 146-154 (168)
7 1cno_A Cytochrome C552; electr 13.4 1E+02 0.0036 21.9 2.3 21 75-95 65-85 (87)
8 1cyx_A CYOA; electron transpor 13.0 74 0.0025 28.6 1.6 17 161-179 45-61 (205)
9 1u9d_A Hypothetical protein VC 12.9 1.7E+02 0.0057 24.2 3.6 31 55-89 59-89 (122)
10 2d0s_A Cytochrome C, cytochrom 12.1 94 0.0032 21.7 1.6 18 75-92 61-78 (79)
No 1
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=51.30 E-value=6.4 Score=35.65 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=13.0
Q ss_pred CCCCCCCceEEEeccCCcc
Q 041686 161 LPINPKGGLYLLLTSTDVY 179 (325)
Q Consensus 161 lP~~~~~giylVLTa~DV~ 179 (325)
+|.+ .-|.+.+||+||-
T Consensus 144 lP~~--~~Vr~~vtS~DVi 160 (227)
T 1v54_B 144 LPME--MTIRMLVSSEDVL 160 (227)
T ss_dssp EETT--SCEEEEEEESSSC
T ss_pred EecC--CEEEEEEEeCccc
Confidence 3554 4699999999993
No 2
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=47.27 E-value=11 Score=35.89 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=13.5
Q ss_pred CCCCCCCceEEEeccCCc
Q 041686 161 LPINPKGGLYLLLTSTDV 178 (325)
Q Consensus 161 lP~~~~~giylVLTa~DV 178 (325)
+|.+ .-|.+.+||.||
T Consensus 155 lP~g--~~V~~~lTS~DV 170 (315)
T 1fft_B 155 FPAN--TPVYFKVTSNSV 170 (315)
T ss_dssp CCSS--SEEEEEECBSSS
T ss_pred EeCC--CEEEEEEEeCCc
Confidence 5665 479999999999
No 3
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=33.66 E-value=13 Score=35.15 Aligned_cols=17 Identities=41% Similarity=0.425 Sum_probs=12.9
Q ss_pred CCCCCCCceEEEeccCCcc
Q 041686 161 LPINPKGGLYLLLTSTDVY 179 (325)
Q Consensus 161 lP~~~~~giylVLTa~DV~ 179 (325)
+|.+ .-|.+.+||.||.
T Consensus 145 ~P~~--~~v~~~~ts~DVi 161 (337)
T 2yev_B 145 LPAG--VPVELEITSKDVI 161 (337)
Confidence 5665 3688999999983
No 4
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=27.04 E-value=25 Score=32.40 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=11.0
Q ss_pred CceEEEeccCCcc
Q 041686 167 GGLYLLLTSTDVY 179 (325)
Q Consensus 167 ~giylVLTa~DV~ 179 (325)
.-|.+.+||.||.
T Consensus 179 ~~v~~~~tS~DVi 191 (262)
T 2gsm_B 179 KTVVVQVTGADVI 191 (262)
T ss_dssp SEEEEEEEESSSC
T ss_pred CEEEEEEEECccc
Confidence 4689999999993
No 5
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=26.82 E-value=22 Score=23.54 Aligned_cols=11 Identities=45% Similarity=1.099 Sum_probs=8.7
Q ss_pred CCCCCCCCCCC
Q 041686 212 AKLCPGVCAYP 222 (325)
Q Consensus 212 ~~qCPg~CAwP 222 (325)
++.|||+|..-
T Consensus 1 ekkcpgrctlk 11 (36)
T 2b5b_A 1 EKKCPGRCTLK 11 (36)
T ss_dssp CCCCSSCSSSS
T ss_pred CCCCCcceeEe
Confidence 57899999863
No 6
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=16.78 E-value=58 Score=28.12 Aligned_cols=9 Identities=44% Similarity=1.121 Sum_probs=5.8
Q ss_pred ccccccccc
Q 041686 181 QDFCGQVCG 189 (325)
Q Consensus 181 ~gFC~s~CG 189 (325)
.+.|...||
T Consensus 146 ~g~Cse~CG 154 (168)
T 3s8f_B 146 RIICNQYCG 154 (168)
T ss_dssp EEECCSCCS
T ss_pred EEECCcCCC
Confidence 456766676
No 7
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=13.42 E-value=1e+02 Score=21.95 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=18.2
Q ss_pred ecCCchhHHHHHHHHHhcCCC
Q 041686 75 GTWLKSQKRIIREFINSISAV 95 (325)
Q Consensus 75 G~ftp~QksiI~DFl~Sls~~ 95 (325)
+..++.|...|.+||.+|...
T Consensus 65 ~~ls~~ei~~l~~yl~~l~~~ 85 (87)
T 1cno_A 65 TALSDADIANLAAYYASNPAA 85 (87)
T ss_dssp TTCCHHHHHHHHHHHHHSCTT
T ss_pred hhCCHHHHHHHHHHHHhCCcc
Confidence 468999999999999999754
No 8
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=12.98 E-value=74 Score=28.61 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=13.2
Q ss_pred CCCCCCCceEEEeccCCcc
Q 041686 161 LPINPKGGLYLLLTSTDVY 179 (325)
Q Consensus 161 lP~~~~~giylVLTa~DV~ 179 (325)
+|.+ .-|.+.|||.||.
T Consensus 45 lP~g--~~V~~~lTS~DVi 61 (205)
T 1cyx_A 45 FPAN--TPVYFKVTSNSVM 61 (205)
T ss_dssp EETT--SCEEEEEEESSSC
T ss_pred EeCC--CEEEEEEecCCce
Confidence 4555 4799999999984
No 9
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=12.91 E-value=1.7e+02 Score=24.16 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=21.0
Q ss_pred eeecCCceecccceEEEEEeecCCchhHHHHHHHH
Q 041686 55 MKYHMGPVLTANITVHPIWYGTWLKSQKRIIREFI 89 (325)
Q Consensus 55 L~YH~GpvLtg~i~V~lIWYG~ftp~QksiI~DFl 89 (325)
-.||+| .+---|++-|.|| ++.||..+...+
T Consensus 59 ~~i~~G---~~MP~VeV~~fgR-t~EqK~~la~~I 89 (122)
T 1u9d_A 59 QYFAEG---GVYPMVEVLWFGR-EQQTQDQIAQVI 89 (122)
T ss_dssp CCCCTT---CCCCEEEEEESCC-CHHHHHHHHHHH
T ss_pred EEEecC---CCCCEEEEEEcCC-CHHHHHHHHHHH
Confidence 346778 4534589999997 888886444444
No 10
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=12.08 E-value=94 Score=21.69 Aligned_cols=18 Identities=6% Similarity=0.084 Sum_probs=16.5
Q ss_pred ecCCchhHHHHHHHHHhc
Q 041686 75 GTWLKSQKRIIREFINSI 92 (325)
Q Consensus 75 G~ftp~QksiI~DFl~Sl 92 (325)
+..++.|.+.|.+||.+|
T Consensus 61 ~~Ls~~ei~~l~~yl~~l 78 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLTL 78 (79)
T ss_dssp TTSCHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 678999999999999987
Done!