Query 041686
Match_columns 325
No_of_seqs 131 out of 180
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 16:23:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041686.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041686hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5e2 f.23.12.1 (E:31-86) Ir 40.7 6.2 0.00045 27.4 1.9 15 81-95 41-55 (56)
2 d1v54b1 b.6.1.2 (B:91-227) Cyt 32.2 8.8 0.00064 30.2 1.8 17 161-179 54-70 (137)
3 d1ppje2 f.23.12.1 (E:1-69) Iro 23.1 19 0.0014 25.6 2.0 15 81-95 51-65 (69)
4 d3ehbb1 b.6.1.2 (B:108-252) Cy 22.4 16 0.0011 28.8 1.6 17 161-179 57-73 (145)
5 d1cyxa_ b.6.1.2 (A:) Quinol ox 20.5 18 0.0013 29.0 1.7 21 161-184 31-51 (158)
6 d3dtub1 b.6.1.2 (B:130-281) Cy 18.6 21 0.0015 28.4 1.6 13 167-179 75-87 (152)
7 d2cs7a1 d.9.2.1 (A:0-54) Pneum 13.9 56 0.0041 22.1 2.6 25 67-91 31-55 (55)
8 d1c53a_ a.3.1.1 (A:) Cytochrom 13.7 32 0.0024 22.8 1.4 20 73-92 60-79 (79)
9 d1wvec1 a.3.1.1 (C:602-675) p- 13.6 44 0.0032 22.6 2.1 19 75-93 55-73 (74)
10 d1ynra1 a.3.1.1 (A:1-80) Cytoc 13.3 44 0.0032 22.5 2.0 19 75-93 62-80 (80)
No 1
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.69 E-value=6.2 Score=27.37 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=13.5
Q ss_pred hHHHHHHHHHhcCCC
Q 041686 81 QKRIIREFINSISAV 95 (325)
Q Consensus 81 QksiI~DFl~Sls~~ 95 (325)
-|++|.|||.+++++
T Consensus 41 AKstV~~FlssMSAS 55 (56)
T d3cx5e2 41 AKSTVETFISSMTAT 55 (56)
T ss_dssp HHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhcccc
Confidence 589999999999975
No 2
>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 9913]}
Probab=32.17 E-value=8.8 Score=30.22 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=13.1
Q ss_pred CCCCCCCceEEEeccCCcc
Q 041686 161 LPINPKGGLYLLLTSTDVY 179 (325)
Q Consensus 161 lP~~~~~giylVLTa~DV~ 179 (325)
+|.+ .-|.+.|||.||.
T Consensus 54 lP~g--~~v~~~ltS~DVi 70 (137)
T d1v54b1 54 LPME--MTIRMLVSSEDVL 70 (137)
T ss_dssp EETT--SCEEEEEEESSSC
T ss_pred eecc--ccceeeeccCccc
Confidence 4554 4789999999994
No 3
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.07 E-value=19 Score=25.59 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhcCCC
Q 041686 81 QKRIIREFINSISAV 95 (325)
Q Consensus 81 QksiI~DFl~Sls~~ 95 (325)
-|++|.+|+.+++++
T Consensus 51 AK~~V~~fvssmSaS 65 (69)
T d1ppje2 51 AKNVVSQFVSSMSAS 65 (69)
T ss_dssp HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhcCcc
Confidence 589999999999976
No 4
>d3ehbb1 b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus denitrificans [TaxId: 266]}
Probab=22.43 E-value=16 Score=28.80 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=13.3
Q ss_pred CCCCCCCceEEEeccCCcc
Q 041686 161 LPINPKGGLYLLLTSTDVY 179 (325)
Q Consensus 161 lP~~~~~giylVLTa~DV~ 179 (325)
+|.+ .-|-+.|||.||.
T Consensus 57 lP~g--~~V~~~ltS~DVi 73 (145)
T d3ehbb1 57 VPVG--KKVLVQVTATDVI 73 (145)
T ss_dssp EETT--SEEEEEEEESSSC
T ss_pred Eecc--ceEEEEEEeCccc
Confidence 4554 4788999999994
No 5
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]}
Probab=20.52 E-value=18 Score=28.99 Aligned_cols=21 Identities=33% Similarity=0.603 Sum_probs=15.0
Q ss_pred CCCCCCCceEEEeccCCccccccc
Q 041686 161 LPINPKGGLYLLLTSTDVYVQDFC 184 (325)
Q Consensus 161 lP~~~~~giylVLTa~DV~V~gFC 184 (325)
+|.+ .-|.+.|||.||. .+|+
T Consensus 31 lP~g--~pV~~~ltS~DVi-HsF~ 51 (158)
T d1cyxa_ 31 FPAN--TPVYFKVTSNSVM-HSFF 51 (158)
T ss_dssp EETT--SCEEEEEEESSSC-EEEE
T ss_pred eeCC--CeEEEEEEcCCcc-hhhh
Confidence 4555 4789999999994 4444
No 6
>d3dtub1 b.6.1.2 (B:130-281) Cytochrome c oxidase {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=18.65 E-value=21 Score=28.36 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=10.9
Q ss_pred CceEEEeccCCcc
Q 041686 167 GGLYLLLTSTDVY 179 (325)
Q Consensus 167 ~giylVLTa~DV~ 179 (325)
.-|.+.|||.||.
T Consensus 75 ~~v~~~ltS~DVi 87 (152)
T d3dtub1 75 KTVVVQVTGADVI 87 (152)
T ss_dssp SEEEEEEEESSSC
T ss_pred CEEEEEEecCchh
Confidence 4688999999994
No 7
>d2cs7a1 d.9.2.1 (A:0-54) Pneumococcal histidine triad protein A, PhtA {Streptococcus pneumoniae [TaxId: 1313]}
Probab=13.89 E-value=56 Score=22.15 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=22.1
Q ss_pred ceEEEEEeecCCchhHHHHHHHHHh
Q 041686 67 ITVHPIWYGTWLKSQKRIIREFINS 91 (325)
Q Consensus 67 i~V~lIWYG~ftp~QksiI~DFl~S 91 (325)
-.-++|.|...++.+.++.+.+|+.
T Consensus 31 dH~H~I~~~dLs~~e~~~A~~~l~g 55 (55)
T d2cs7a1 31 DHYHYIPKNELSASELAAAEAFLSG 55 (55)
T ss_dssp TEEEEEEGGGSCHHHHHHHHHHHHC
T ss_pred CcccccchhhCCHHHHHHHHHHhcC
Confidence 3579999999999999999999863
No 8
>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}
Probab=13.70 E-value=32 Score=22.77 Aligned_cols=20 Identities=0% Similarity=0.298 Sum_probs=17.3
Q ss_pred EeecCCchhHHHHHHHHHhc
Q 041686 73 WYGTWLKSQKRIIREFINSI 92 (325)
Q Consensus 73 WYG~ftp~QksiI~DFl~Sl 92 (325)
|-++.|..|..-|.+||.||
T Consensus 60 ~~~~Lsd~ei~~l~aYi~sL 79 (79)
T d1c53a_ 60 LVKRYSDEEMKAMADYMSKL 79 (79)
T ss_pred HHhcCCHHHHHHHHHHHHhC
Confidence 34679999999999999987
No 9
>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]}
Probab=13.62 E-value=44 Score=22.57 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=16.6
Q ss_pred ecCCchhHHHHHHHHHhcC
Q 041686 75 GTWLKSQKRIIREFINSIS 93 (325)
Q Consensus 75 G~ftp~QksiI~DFl~Sls 93 (325)
+..++.|...|.+||+||.
T Consensus 55 ~~lsd~ei~~l~~Yi~slp 73 (74)
T d1wvec1 55 SYVDDESLTQVAEYLSSLP 73 (74)
T ss_dssp TTSCHHHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHHHHhCC
Confidence 3589999999999999985
No 10
>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}
Probab=13.27 E-value=44 Score=22.48 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=16.7
Q ss_pred ecCCchhHHHHHHHHHhcC
Q 041686 75 GTWLKSQKRIIREFINSIS 93 (325)
Q Consensus 75 G~ftp~QksiI~DFl~Sls 93 (325)
.++|+.|...|.+||+||.
T Consensus 62 ~~lsd~ei~~l~~yi~sLk 80 (80)
T d1ynra1 62 QNVTDAEAKQLAQWILSIK 80 (80)
T ss_dssp CSCCHHHHHHHHHHHHTCC
T ss_pred ccCCHHHHHHHHHHHHHcC
Confidence 4689999999999999983
Done!