Query 041687
Match_columns 764
No_of_seqs 299 out of 1869
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:38:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 2E-146 3E-151 1306.5 78.5 719 12-745 18-797 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 3E-123 6E-128 1090.2 52.2 716 23-746 7-768 (769)
3 PRK03562 glutathione-regulated 100.0 1.5E-43 3.2E-48 412.8 41.6 348 37-415 5-381 (621)
4 PRK10669 putative cation:proto 100.0 1.7E-43 3.7E-48 410.8 40.7 355 38-414 7-389 (558)
5 PRK03659 glutathione-regulated 100.0 6.5E-43 1.4E-47 406.9 41.5 348 37-415 5-378 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 1.4E-41 3E-46 376.1 38.8 356 36-415 5-386 (397)
7 TIGR00932 2a37 transporter, mo 100.0 1.1E-35 2.3E-40 315.6 31.9 271 47-344 2-273 (273)
8 PRK05326 potassium/proton anti 100.0 1.3E-35 2.9E-40 344.6 32.8 357 35-414 4-388 (562)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 2.5E-35 5.3E-40 327.8 -3.3 345 44-413 3-378 (380)
10 COG4651 RosB Kef-type K+ trans 100.0 1.5E-29 3.3E-34 254.3 26.3 356 33-414 3-388 (408)
11 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 1.8E-23 3.8E-28 240.2 32.2 342 43-413 4-408 (525)
12 TIGR00844 c_cpa1 na(+)/h(+) an 99.9 1.6E-22 3.5E-27 233.1 34.2 329 38-385 14-386 (810)
13 COG0025 NhaP NhaP-type Na+/H+ 99.8 2.1E-18 4.6E-23 193.0 33.9 356 37-414 6-407 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.8 3.1E-18 6.8E-23 181.0 23.1 351 34-410 4-382 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.8 2.3E-17 5E-22 189.7 31.2 363 36-413 8-416 (559)
16 PRK11175 universal stress prot 99.8 2.4E-17 5.3E-22 177.8 19.2 271 436-742 4-300 (305)
17 KOG4505 Na+/H+ antiporter [Ino 99.6 9.9E-13 2.1E-17 135.1 25.7 321 47-382 24-383 (467)
18 PRK14853 nhaA pH-dependent sod 99.5 1.1E-11 2.4E-16 135.7 29.2 244 99-382 63-363 (423)
19 cd01988 Na_H_Antiporter_C The 99.4 1.1E-12 2.3E-17 122.8 11.5 128 437-579 1-131 (132)
20 KOG1965 Sodium/hydrogen exchan 99.4 1.9E-11 4.2E-16 136.0 20.4 354 41-413 39-454 (575)
21 PRK15005 universal stress prot 99.2 1.2E-10 2.5E-15 111.1 10.7 136 436-579 3-143 (144)
22 PRK15456 universal stress prot 99.1 1.5E-10 3.3E-15 110.3 9.9 134 436-579 3-141 (142)
23 PRK09982 universal stress prot 99.1 3.9E-10 8.5E-15 107.6 9.6 133 436-579 4-137 (142)
24 PRK15118 universal stress glob 99.1 5.6E-10 1.2E-14 106.5 10.5 135 436-580 4-138 (144)
25 cd01989 STK_N The N-terminal d 99.0 1.9E-09 4.1E-14 103.0 11.2 137 437-580 1-144 (146)
26 cd01987 USP_OKCHK USP domain i 99.0 5.1E-09 1.1E-13 97.1 11.1 119 437-579 1-123 (124)
27 TIGR00773 NhaA Na+/H+ antiport 98.9 3.7E-08 8E-13 106.3 18.7 244 99-382 53-344 (373)
28 PF00582 Usp: Universal stress 98.9 3.9E-09 8.4E-14 98.4 7.7 131 436-579 3-139 (140)
29 PRK10116 universal stress prot 98.8 2E-08 4.3E-13 95.4 10.1 134 436-581 4-139 (142)
30 PRK11175 universal stress prot 98.7 4.4E-08 9.6E-13 105.7 9.5 141 435-584 152-303 (305)
31 cd00293 USP_Like Usp: Universa 98.6 2.8E-07 6.1E-12 84.8 10.7 125 437-578 1-129 (130)
32 cd01989 STK_N The N-terminal d 98.4 3E-06 6.6E-11 80.8 12.5 128 599-742 1-145 (146)
33 PF00582 Usp: Universal stress 98.3 2.8E-06 6E-11 79.0 9.8 130 597-741 2-140 (140)
34 cd01988 Na_H_Antiporter_C The 98.3 7.9E-06 1.7E-10 76.1 12.5 127 599-741 1-132 (132)
35 PRK09982 universal stress prot 98.3 5.4E-06 1.2E-10 79.0 11.3 123 597-741 3-138 (142)
36 PRK14856 nhaA pH-dependent sod 98.3 8E-05 1.7E-09 82.1 21.5 244 98-382 68-398 (438)
37 cd01987 USP_OKCHK USP domain i 98.2 6.2E-06 1.3E-10 76.3 9.6 120 599-740 1-123 (124)
38 PRK15005 universal stress prot 98.2 2.2E-05 4.8E-10 74.6 12.8 127 597-741 2-144 (144)
39 PRK15118 universal stress glob 98.2 1.3E-05 2.8E-10 76.3 10.9 124 597-742 3-139 (144)
40 PRK15456 universal stress prot 98.1 2.4E-05 5.1E-10 74.4 11.6 126 597-741 2-142 (142)
41 PRK09560 nhaA pH-dependent sod 98.1 0.00039 8.4E-09 75.7 21.8 242 100-381 61-352 (389)
42 PRK14855 nhaA pH-dependent sod 98.1 0.00037 8.1E-09 76.6 21.6 243 99-382 64-383 (423)
43 COG0589 UspA Universal stress 98.1 3.1E-05 6.8E-10 73.7 11.8 140 435-580 5-151 (154)
44 PRK10116 universal stress prot 98.1 1.3E-05 2.8E-10 76.0 8.9 124 597-741 3-138 (142)
45 PRK09561 nhaA pH-dependent sod 98.0 0.00055 1.2E-08 74.4 21.1 244 99-382 60-351 (388)
46 PRK14854 nhaA pH-dependent sod 98.0 0.0013 2.9E-08 71.3 22.4 244 99-382 57-348 (383)
47 PF06965 Na_H_antiport_1: Na+/ 97.9 0.00023 5E-09 77.2 15.6 246 98-383 55-352 (378)
48 cd00293 USP_Like Usp: Universa 97.8 0.00026 5.6E-09 64.9 12.3 127 599-740 1-130 (130)
49 KOG1966 Sodium/hydrogen exchan 97.8 5E-05 1.1E-09 85.2 8.2 286 43-343 48-343 (670)
50 PRK12652 putative monovalent c 97.5 0.00067 1.4E-08 74.3 12.2 123 597-731 5-144 (357)
51 COG3004 NhaA Na+/H+ antiporter 97.5 0.021 4.6E-07 60.0 21.5 237 107-383 71-355 (390)
52 PRK12652 putative monovalent c 97.3 0.001 2.2E-08 72.9 10.3 128 435-576 5-146 (357)
53 PF03812 KdgT: 2-keto-3-deoxyg 96.6 0.069 1.5E-06 56.6 15.4 89 107-196 51-140 (314)
54 COG0589 UspA Universal stress 96.5 0.055 1.2E-06 51.1 13.2 131 597-743 5-153 (154)
55 PF03601 Cons_hypoth698: Conse 96.4 1.2 2.6E-05 48.0 24.4 84 58-152 23-108 (305)
56 PRK12460 2-keto-3-deoxyglucona 96.4 0.12 2.6E-06 55.0 16.0 85 107-196 51-135 (312)
57 PRK10490 sensor protein KdpD; 96.2 0.028 6.1E-07 69.7 11.7 124 433-580 248-373 (895)
58 TIGR00698 conserved hypothetic 96.0 2.7 5.8E-05 45.9 24.4 85 56-149 26-110 (335)
59 COG0385 Predicted Na+-dependen 95.4 2.3 4.9E-05 45.8 20.5 154 98-266 35-191 (319)
60 PF03956 DUF340: Membrane prot 95.3 0.22 4.7E-06 49.9 11.8 128 66-219 3-135 (191)
61 PF06826 Asp-Al_Ex: Predicted 95.2 0.63 1.4E-05 45.7 14.5 115 57-187 19-136 (169)
62 PF01758 SBF: Sodium Bile acid 94.9 1.5 3.2E-05 43.8 16.7 28 105-132 2-29 (187)
63 PRK03562 glutathione-regulated 94.9 1 2.2E-05 53.7 18.0 127 52-197 231-359 (621)
64 PRK03659 glutathione-regulated 94.6 1.4 2.9E-05 52.4 18.1 125 52-195 228-354 (601)
65 TIGR00832 acr3 arsenical-resis 94.2 7.2 0.00016 42.6 21.2 99 104-214 46-149 (328)
66 PF05684 DUF819: Protein of un 94.1 12 0.00026 41.7 23.6 85 60-155 24-108 (378)
67 COG0786 GltS Na+/glutamate sym 94.0 9.4 0.0002 42.0 21.1 100 249-348 170-302 (404)
68 PRK03818 putative transporter; 93.9 0.64 1.4E-05 54.4 13.2 107 65-188 34-143 (552)
69 cd01984 AANH_like Adenine nucl 93.1 0.24 5.3E-06 42.4 6.1 46 532-577 35-84 (86)
70 PRK10669 putative cation:proto 93.1 3.6 7.8E-05 48.5 17.8 121 57-196 244-366 (558)
71 PF13593 DUF4137: SBF-like CPA 92.7 7.5 0.00016 42.2 18.3 152 100-265 30-187 (313)
72 TIGR03802 Asp_Ala_antiprt aspa 92.4 1.2 2.7E-05 52.2 12.5 116 58-188 412-531 (562)
73 TIGR00793 kdgT 2-keto-3-deoxyg 92.4 2.1 4.6E-05 45.4 12.7 89 107-196 51-140 (314)
74 COG2205 KdpD Osmosensitive K+ 92.1 0.97 2.1E-05 53.7 10.9 123 433-579 246-372 (890)
75 PRK10490 sensor protein KdpD; 92.0 0.46 9.9E-06 59.1 8.9 124 597-741 250-373 (895)
76 TIGR01625 YidE_YbjL_dupl AspT/ 91.7 2.2 4.7E-05 41.2 11.1 114 61-189 21-139 (154)
77 PLN03159 cation/H(+) antiporte 91.1 6.2 0.00014 48.7 17.1 44 431-475 626-669 (832)
78 TIGR00698 conserved hypothetic 91.0 2.8 6E-05 45.8 12.4 83 59-152 249-331 (335)
79 TIGR03082 Gneg_AbrB_dup membra 90.8 3.2 6.9E-05 40.2 11.5 99 44-157 2-102 (156)
80 COG0798 ACR3 Arsenite efflux p 90.7 28 0.0006 37.7 19.2 179 64-266 20-202 (342)
81 PRK04972 putative transporter; 89.6 2.4 5.2E-05 49.8 11.3 105 57-186 33-140 (558)
82 COG0475 KefB Kef-type K+ trans 89.4 14 0.00031 41.4 17.0 101 42-153 224-325 (397)
83 PRK12460 2-keto-3-deoxyglucona 88.9 7.5 0.00016 41.7 13.2 48 105-152 196-243 (312)
84 TIGR03802 Asp_Ala_antiprt aspa 88.7 4.2 9.1E-05 47.8 12.5 81 44-141 13-98 (562)
85 COG3180 AbrB Putative ammonia 88.6 42 0.0009 36.8 24.8 103 38-156 7-112 (352)
86 PRK05274 2-keto-3-deoxyglucona 88.5 16 0.00034 39.8 15.8 46 108-153 54-99 (326)
87 TIGR00946 2a69 he Auxin Efflux 88.3 13 0.00029 40.2 15.4 133 59-214 180-313 (321)
88 PRK04972 putative transporter; 88.0 5.3 0.00012 46.9 12.7 132 43-188 387-526 (558)
89 PF03390 2HCT: 2-hydroxycarbox 87.7 53 0.0011 36.9 19.6 305 44-387 36-394 (414)
90 COG2985 Predicted permease [Ge 86.5 2.8 6.2E-05 47.0 8.6 78 104-190 62-146 (544)
91 PF03616 Glt_symporter: Sodium 85.0 69 0.0015 35.6 22.5 25 109-133 72-96 (368)
92 PRK03359 putative electron tra 84.3 4.5 9.8E-05 42.5 8.6 107 602-725 30-149 (256)
93 TIGR00932 2a37 transporter, mo 83.6 12 0.00026 39.5 11.8 64 283-348 3-67 (273)
94 TIGR00210 gltS sodium--glutama 83.4 32 0.0007 38.6 15.4 163 41-214 223-390 (398)
95 PRK12342 hypothetical protein; 81.8 6.5 0.00014 41.2 8.6 95 602-713 29-137 (254)
96 COG3493 CitS Na+/citrate sympo 81.6 90 0.0019 34.4 18.9 34 354-387 379-413 (438)
97 PF01171 ATP_bind_3: PP-loop f 80.7 7.2 0.00016 38.6 8.2 95 599-701 1-107 (182)
98 PRK03818 putative transporter; 80.5 13 0.00027 43.8 11.4 106 64-184 403-513 (552)
99 COG2205 KdpD Osmosensitive K+ 79.6 7.8 0.00017 46.5 9.1 127 597-742 248-374 (890)
100 TIGR00841 bass bile acid trans 79.3 93 0.002 33.2 19.7 98 104-214 11-113 (286)
101 TIGR02432 lysidine_TilS_N tRNA 78.8 12 0.00027 37.0 9.3 37 599-635 1-37 (189)
102 PRK05326 potassium/proton anti 78.4 13 0.00029 43.8 10.9 63 54-126 237-299 (562)
103 cd01984 AANH_like Adenine nucl 78.2 5 0.00011 34.1 5.4 34 600-634 1-34 (86)
104 TIGR00210 gltS sodium--glutama 78.0 1.3E+02 0.0027 34.0 28.1 97 41-150 11-116 (398)
105 cd01992 PP-ATPase N-terminal d 76.6 15 0.00032 36.1 9.1 38 599-636 1-38 (185)
106 PRK05253 sulfate adenylyltrans 75.5 10 0.00023 40.8 8.1 41 598-638 28-68 (301)
107 TIGR00808 malonate_madM malona 73.3 52 0.0011 33.0 11.4 104 45-156 21-134 (254)
108 COG2855 Predicted membrane pro 72.9 1.5E+02 0.0032 32.3 24.8 101 57-175 33-133 (334)
109 TIGR02039 CysD sulfate adenyly 72.6 14 0.0003 39.7 8.1 42 598-639 20-61 (294)
110 KOG2310 DNA repair exonuclease 72.2 7.2 0.00016 44.3 5.9 124 534-659 41-196 (646)
111 COG2855 Predicted membrane pro 71.3 29 0.00064 37.6 10.1 55 92-146 273-327 (334)
112 PRK09903 putative transporter 71.1 89 0.0019 33.7 14.2 109 59-188 171-280 (314)
113 COG1346 LrgB Putative effector 69.5 1.4E+02 0.003 30.7 14.6 125 45-189 14-143 (230)
114 PF02040 ArsB: Arsenical pump 69.0 2.1E+02 0.0046 32.5 20.8 37 178-214 117-153 (423)
115 PF03616 Glt_symporter: Sodium 68.0 72 0.0016 35.4 12.8 95 42-144 226-322 (368)
116 PF05145 AmoA: Putative ammoni 66.7 68 0.0015 34.9 12.1 102 40-156 155-258 (318)
117 COG0679 Predicted permeases [G 66.7 1.3E+02 0.0029 32.4 14.4 83 59-153 166-250 (311)
118 COG2086 FixA Electron transfer 66.2 20 0.00042 37.8 7.4 111 602-726 31-149 (260)
119 COG2431 Predicted membrane pro 65.7 1.1E+02 0.0025 32.2 12.6 77 63-153 108-188 (297)
120 PF03812 KdgT: 2-keto-3-deoxyg 64.3 38 0.00082 36.4 9.1 74 66-153 176-249 (314)
121 COG2985 Predicted permease [Ge 63.8 32 0.00069 39.0 8.7 108 63-184 397-507 (544)
122 PF03601 Cons_hypoth698: Conse 63.6 72 0.0016 34.5 11.4 148 280-429 6-186 (305)
123 PF02844 GARS_N: Phosphoribosy 63.6 18 0.00038 32.3 5.5 80 599-713 2-81 (100)
124 PF01012 ETF: Electron transfe 63.6 31 0.00066 33.3 7.9 95 607-713 14-115 (164)
125 COG3180 AbrB Putative ammonia 63.5 86 0.0019 34.4 11.8 117 27-156 174-291 (352)
126 TIGR00783 ccs citrate carrier 63.0 1.9E+02 0.0042 31.8 14.4 93 295-387 203-327 (347)
127 cd01993 Alpha_ANH_like_II This 60.9 70 0.0015 31.1 10.1 38 599-636 1-40 (185)
128 PRK12933 secD preprotein trans 58.9 2E+02 0.0044 34.0 14.6 26 240-265 571-596 (604)
129 PRK12563 sulfate adenylyltrans 58.6 23 0.0005 38.2 6.5 42 598-639 38-79 (312)
130 TIGR00793 kdgT 2-keto-3-deoxyg 58.1 90 0.0019 33.5 10.5 74 66-153 176-249 (314)
131 PF00999 Na_H_Exchanger: Sodiu 57.4 4.3 9.3E-05 45.1 0.7 75 38-124 211-286 (380)
132 TIGR00783 ccs citrate carrier 56.9 1.2E+02 0.0025 33.4 11.5 93 55-155 197-293 (347)
133 COG3969 Predicted phosphoadeno 53.3 35 0.00075 36.9 6.5 56 597-660 27-83 (407)
134 TIGR03136 malonate_biotin Na+- 53.0 88 0.0019 34.4 9.5 163 268-432 15-232 (399)
135 PRK10660 tilS tRNA(Ile)-lysidi 51.3 1.1E+02 0.0025 34.8 10.9 58 597-660 15-73 (436)
136 PF05982 DUF897: Domain of unk 49.6 1E+02 0.0022 33.4 9.5 46 107-153 213-261 (327)
137 cd01713 PAPS_reductase This do 48.7 1.1E+02 0.0023 29.0 9.0 37 599-636 1-37 (173)
138 COG0037 MesJ tRNA(Ile)-lysidin 48.2 1.2E+02 0.0026 32.3 10.1 55 598-660 22-76 (298)
139 PRK01663 C4-dicarboxylate tran 48.1 2.5E+02 0.0055 31.9 13.0 35 119-153 66-100 (428)
140 TIGR00930 2a30 K-Cl cotranspor 47.3 7E+02 0.015 31.6 45.2 128 429-580 569-708 (953)
141 PRK05274 2-keto-3-deoxyglucona 47.2 2.7E+02 0.0058 30.5 12.4 46 107-152 205-250 (326)
142 KOG0573 Asparagine synthase [A 46.6 1E+02 0.0022 34.7 9.0 105 559-675 223-328 (520)
143 COG0786 GltS Na+/glutamate sym 45.5 2.4E+02 0.0052 31.4 11.6 95 39-141 224-320 (404)
144 COG3633 SstT Na+/serine sympor 44.1 2.4E+02 0.0052 30.1 10.7 30 54-84 6-35 (407)
145 TIGR00844 c_cpa1 na(+)/h(+) an 43.3 7.3E+02 0.016 30.6 21.6 32 244-275 329-361 (810)
146 PF02601 Exonuc_VII_L: Exonucl 41.8 41 0.00089 36.5 5.3 26 677-702 57-87 (319)
147 KOG1288 Amino acid transporter 38.1 8E+02 0.017 29.7 19.3 138 391-555 511-662 (945)
148 COG1570 XseA Exonuclease VII, 38.1 48 0.001 37.4 5.1 54 649-702 148-205 (440)
149 PRK12911 bifunctional preprote 37.4 7.4E+02 0.016 32.3 15.3 26 240-265 1039-1064(1403)
150 COG3199 Predicted inorganic po 37.0 1.9E+02 0.0041 31.6 9.1 92 613-720 34-128 (355)
151 PF03547 Mem_trans: Membrane t 36.4 5.5E+02 0.012 28.2 13.5 65 53-124 236-300 (385)
152 PF05145 AmoA: Putative ammoni 35.2 6.1E+02 0.013 27.5 18.3 56 101-157 25-80 (318)
153 cd01712 ThiI ThiI is required 35.1 1.4E+02 0.003 29.1 7.4 34 599-636 1-34 (177)
154 cd01118 ArsB_permease Anion pe 35.1 6.8E+02 0.015 27.9 21.6 24 51-74 10-33 (416)
155 TIGR00840 b_cpa1 sodium/hydrog 34.6 2.5E+02 0.0054 33.2 10.5 73 41-118 239-311 (559)
156 PRK04288 antiholin-like protei 33.7 5.6E+02 0.012 26.5 15.9 129 42-189 13-146 (232)
157 COG1154 Dxs Deoxyxylulose-5-ph 33.6 6.8E+02 0.015 29.7 13.3 142 527-687 421-579 (627)
158 COG2117 Predicted subunit of t 33.0 28 0.0006 33.6 1.9 32 599-634 2-33 (198)
159 TIGR00400 mgtE Mg2+ transporte 32.7 6.3E+02 0.014 28.8 13.3 12 203-214 428-439 (449)
160 PF01507 PAPS_reduct: Phosphoa 32.3 84 0.0018 30.1 5.4 50 599-660 1-50 (174)
161 cd01985 ETF The electron trans 31.9 2.6E+02 0.0057 27.2 8.9 93 606-713 17-116 (181)
162 PRK06806 fructose-bisphosphate 31.3 2.4E+02 0.0052 30.1 8.9 112 517-633 16-138 (281)
163 KOG1650 Predicted K+/H+-antipo 31.3 4.9E+02 0.011 32.1 12.6 86 104-197 313-400 (769)
164 COG2035 Predicted membrane pro 30.7 6E+02 0.013 27.0 11.3 46 34-81 58-105 (276)
165 PRK15475 oxaloacetate decarbox 30.0 36 0.00079 37.2 2.4 98 325-426 130-259 (433)
166 COG1646 Predicted phosphate-bi 29.8 1.6E+02 0.0036 30.3 6.8 61 521-581 16-78 (240)
167 PRK04125 murein hydrolase regu 29.8 4.9E+02 0.011 24.7 11.0 26 37-62 8-33 (141)
168 TIGR00831 a_cpa1 Na+/H+ antipo 29.6 9.6E+02 0.021 28.0 19.8 75 41-120 210-285 (525)
169 COG0025 NhaP NhaP-type Na+/H+ 29.6 8.7E+02 0.019 27.5 16.1 83 41-127 226-308 (429)
170 cd01995 ExsB ExsB is a transcr 29.5 1.7E+02 0.0037 28.1 7.0 32 599-634 1-32 (169)
171 PRK15476 oxaloacetate decarbox 29.2 38 0.00083 37.0 2.4 98 325-426 130-259 (433)
172 PRK15477 oxaloacetate decarbox 29.2 38 0.00083 37.0 2.4 98 325-426 130-259 (433)
173 PF04172 LrgB: LrgB-like famil 28.6 6.5E+02 0.014 25.7 13.3 83 95-189 47-130 (215)
174 COG5505 Predicted integral mem 28.4 7.8E+02 0.017 26.6 14.5 110 96-214 55-164 (384)
175 PRK00286 xseA exodeoxyribonucl 27.7 85 0.0018 35.7 5.1 52 650-702 149-204 (438)
176 PRK00536 speE spermidine synth 27.1 1.8E+02 0.0039 30.7 6.9 30 597-633 73-102 (262)
177 TIGR01109 Na_pump_decarbB sodi 26.9 95 0.0021 33.6 4.8 86 325-414 59-175 (354)
178 COG1606 ATP-utilizing enzymes 26.6 3E+02 0.0066 28.9 8.2 36 597-632 17-52 (269)
179 PRK10696 tRNA 2-thiocytidine b 26.0 3.4E+02 0.0073 28.4 8.9 38 597-634 29-68 (258)
180 PRK12737 gatY tagatose-bisphos 25.7 2.6E+02 0.0057 29.9 8.0 67 517-585 16-86 (284)
181 COG0175 CysH 3'-phosphoadenosi 25.2 3.9E+02 0.0084 28.1 9.1 122 535-704 28-154 (261)
182 PF02355 SecD_SecF: Protein ex 25.0 6.9E+02 0.015 24.8 15.6 29 237-265 161-189 (189)
183 PRK12857 fructose-1,6-bisphosp 24.1 2.8E+02 0.0061 29.6 7.8 66 517-584 16-85 (284)
184 PRK14561 hypothetical protein; 24.1 3.9E+02 0.0084 26.6 8.5 22 599-620 2-23 (194)
185 cd06285 PBP1_LacI_like_7 Ligan 23.8 7.7E+02 0.017 24.9 14.7 106 499-631 12-120 (265)
186 TIGR00659 conserved hypothetic 22.8 8.5E+02 0.018 25.1 15.0 84 95-189 57-140 (226)
187 PF01171 ATP_bind_3: PP-loop f 22.7 3.9E+02 0.0085 26.0 8.2 97 437-557 1-108 (182)
188 PRK10711 hypothetical protein; 22.6 8.7E+02 0.019 25.1 13.9 126 45-189 12-141 (231)
189 PF03390 2HCT: 2-hydroxycarbox 22.5 1.2E+03 0.025 26.5 13.9 92 57-155 267-360 (414)
190 TIGR00032 argG argininosuccina 22.5 1.1E+02 0.0025 34.2 4.7 34 599-636 1-34 (394)
191 COG3371 Predicted membrane pro 22.1 5.8E+02 0.013 25.3 8.8 86 31-132 49-134 (181)
192 PLN00200 argininosuccinate syn 21.9 2E+02 0.0042 32.5 6.3 36 598-636 6-41 (404)
193 COG0151 PurD Phosphoribosylami 20.7 1.4E+02 0.003 33.6 4.8 82 599-714 2-83 (428)
194 TIGR01521 FruBisAldo_II_B fruc 20.4 8.7E+02 0.019 26.8 10.7 66 517-584 14-84 (347)
195 PF03686 UPF0146: Uncharacteri 20.4 1.6E+02 0.0035 27.4 4.4 34 522-555 72-105 (127)
196 PRK06801 hypothetical protein; 20.3 9E+02 0.02 25.8 10.8 106 517-628 16-131 (286)
197 PF06939 DUF1286: Protein of u 20.3 1.8E+02 0.0038 26.4 4.4 51 27-77 60-110 (114)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=1.6e-146 Score=1306.54 Aligned_cols=719 Identities=32% Similarity=0.613 Sum_probs=647.3
Q ss_pred ccccCccccccCCCC--CCCCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhcccccccccccc
Q 041687 12 VCQPFATMVWGSVGF--GSEQPNFNIPNLIIPITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNK 89 (764)
Q Consensus 12 ~c~~~~~~~~~~~g~--~~~~l~~~lp~~llqi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~ 89 (764)
+|+...+. + |+|+ |+||++|++|++++|+++++++++++++++||+|||++++||++|+++||+++|. .+.+.+.
T Consensus 18 ~c~~~~~~-~-s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~-i~~~~~~ 94 (832)
T PLN03159 18 VCYAPMMI-T-TNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQ-SEVFANT 94 (832)
T ss_pred ccccCCCc-c-CCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCc-Chhhhhh
Confidence 69954344 6 8999 9999999999999999999999999999999999999999999999999999999 5788889
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 041687 90 IFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTV 169 (764)
Q Consensus 90 ~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l 169 (764)
+||.++.+.+++++++|++|+||++|+|+|++.+||.+|+++.+|+.++++|+++|+++++++.. ...........+++
T Consensus 95 ~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~~~~~~~~~~~l~~ 173 (832)
T PLN03159 95 IFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFILFL 173 (832)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccchhHHHHHH
Confidence 99988888999999999999999999999999999999999999999999999999988887743 21111123567899
Q ss_pred HHHHhhhhHHHHHHHHhhcccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHH
Q 041687 170 AALESTISIHVILALLSDLKLLNSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVV 249 (764)
Q Consensus 170 ~~~ls~Ts~~vv~~iL~elkll~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (764)
++++|.||+|+++++|+|+|+++++.||+++++++++|+++|+++ +++.+....+. +... .+|.++..++|++
T Consensus 174 g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilL-av~~~l~~~~~----~~~~--~l~~~l~~~~f~~ 246 (832)
T PLN03159 174 GVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILL-ALAIALAENDS----TSLA--SLWVLLSSVAFVL 246 (832)
T ss_pred HHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCC----cchh--HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 66665543322 1234 5677777888889
Q ss_pred HHHHhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHH
Q 041687 250 LIVFGLRPTMFWMMRKTPGGKSPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPPMGASLVDKIESIIWA 329 (764)
Q Consensus 250 ~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~~~~l~~kl~~~~~~ 329 (764)
++++++||++.|+.+|++++++.+|.++.+++++++++++++|.+|+|+++|||++|+++|+ +|+++++.+|+++++++
T Consensus 247 ~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~ 325 (832)
T PLN03159 247 FCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSG 325 (832)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999998 47999999999999999
Q ss_pred HHHHHHHHHhcccccccce-----------ee---ee-------------ccChhHHHHHHHHHhhhhHHHHHHHHhhhh
Q 041687 330 VFMPCFLINVGRRVNFFSV-----------GL---KT-------------FLTVEDAVSLGLLLNCRGLYDVQIFSRAIQ 382 (764)
Q Consensus 330 ~~lPiFF~~~Gl~~dl~~l-----------i~---il-------------g~~~~~a~~lg~~m~~kG~~~l~~~~~~~~ 382 (764)
+|+|+||+++|+++|+..+ ++ ++ ++|++|++.+|++||+||+++++++++|++
T Consensus 326 lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~ 405 (832)
T PLN03159 326 LLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRD 405 (832)
T ss_pred HHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 9999999999999998544 01 11 189999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccccCCCCccceeEEEeeCCCChHHHHHHHHhcC-CC
Q 041687 383 QQMITDESFAIMVASSVLKSAIIIPLVRVVYDSSRRYVAYRRHTIQHNGRNSELRILACINDPDNVATILNIIQTSN-SP 461 (764)
Q Consensus 383 ~~~i~~~~f~~lvl~~ll~t~i~~plv~~l~~p~~~~~~~~~r~i~~~~~~~e~rILvcv~~~e~~~~li~l~~~~~-~~ 461 (764)
.|+++++.|++++++++++|++++|+++++|||+|||..||+|++|+.++++|+|||+|+|++||++++++|+++++ ++
T Consensus 406 ~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~ 485 (832)
T PLN03159 406 QEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTK 485 (832)
T ss_pred cCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CCCceEEEEEeecccCCCCchhhccccccCCCCC---CCCCCchhHHHHHHHHhHhcCCCeEEEEEEEeccCCChHHHHH
Q 041687 462 QSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSS---SKPSKIDPMINALRRYKHYQKGLKSVHCFTAVAPFASMHDDIC 538 (764)
Q Consensus 462 ~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~ 538 (764)
++|.++|++||+|+++|++|++++|+.++ +..+ +...++|+++++|+.|++++ +.|+++++|++||+++||+|||
T Consensus 486 ~sp~~vy~lhLveL~~r~~~~l~~h~~~~-~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~mh~dIc 563 (832)
T PLN03159 486 RSPICIYVLHLVELTGRASAMLIVHNTRK-SGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAISPYSTMHEDVC 563 (832)
T ss_pred CCCceEEEEEEEeecCCCccceeeeeccc-ccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEEeCcccHHHHHH
Confidence 99999999999999999999999997651 1111 12355899999999999864 5799999999999999999999
Q ss_pred HHHHhcCccEEEeccccC---------CChhhHHHHHHhhhcCCcceEEEeecCCCCCCCcccccCcceeEEEeeccCcc
Q 041687 539 LMAFEKCTALVILPFKRA---------DSPQIRTVTKNVIKLAPCSVGILYYRGLFMDPKPIFSRQLTISVCVLFIGGPD 609 (764)
Q Consensus 539 ~~A~e~~adlIIlp~h~s---------~~~~~~~~n~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~i~~~f~gG~d 609 (764)
++|+||++++||+||||. ++..+|.+|+|||++||||||||||||... ..+.+..+..+||+++|+||||
T Consensus 564 ~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~-~~~~~~~~~~~~v~~~F~GG~D 642 (832)
T PLN03159 564 NLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSG-ATRLASNQVSHHVAVLFFGGPD 642 (832)
T ss_pred HHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCc-cccccccccceeEEEEecCCcc
Confidence 999999999999999981 145899999999999999999999999653 2223344557899999999999
Q ss_pred hHHHHHHHHHHhhCCCeEEEEEEeeecCCCCC-------------------CCcchhhhHHHHHHHHHhcccCCCcEEEE
Q 041687 610 DREALAYGARMVENHSIMLTIIRFIAMNHTTN-------------------DNLIEESCDLNMINGFRMTCINNSNVEYI 670 (764)
Q Consensus 610 dreAl~~a~rma~~~~v~ltvlr~~~~~~~~~-------------------~~~~e~~~d~~~~~e~~~~~~~~~~v~y~ 670 (764)
|||||+||+|||+||++++||+||++.+.... +++.|+++||++++|||.++.+++++.|.
T Consensus 643 DREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~ 722 (832)
T PLN03159 643 DREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYT 722 (832)
T ss_pred hHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 99999999999999999999999996532211 13568889999999999998888899999
Q ss_pred EeeecChhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEeeccc
Q 041687 671 TRSIKDGAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQQQAS 745 (764)
Q Consensus 671 e~~V~~g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvqq~~~ 745 (764)
|++|+||+||++++|+++++|||+||||+|+.+|++|+||+||+||||||+|||+|||+||.+++||||||||..
T Consensus 723 E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~~ 797 (832)
T PLN03159 723 EKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYVG 797 (832)
T ss_pred EEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeecc
Confidence 999999999999999999899999999999878999999999999999999999999999999999999999963
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-123 Score=1090.25 Aligned_cols=716 Identities=34% Similarity=0.620 Sum_probs=645.2
Q ss_pred CCCC--CCCCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHH
Q 041687 23 SVGF--GSEQPNFNIPNLIIPITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLN 100 (764)
Q Consensus 23 ~~g~--~~~~l~~~lp~~llqi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~ 100 (764)
+.|+ |+||++|++|++++|+++++++++++++++||+|||++++||++||++||+.+|+ ++.+.+.+||.++...++
T Consensus 7 ~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~-~~~~~~~~f~~~s~~~l~ 85 (769)
T KOG1650|consen 7 SNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGR-IPSYMNTIFPKSSMIVLE 85 (769)
T ss_pred cCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhcc-ChhhhhcccccchHHHHH
Confidence 7888 9999999999999999999999999999999999999999999999999999999 899999999988999999
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----hhHHHHHHHHHHhhh
Q 041687 101 VFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEEN----LGNSLKTVAALESTI 176 (764)
Q Consensus 101 ~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~----~~~~~l~l~~~ls~T 176 (764)
+++.+|+.+++|+.|+|+|.+.+++.+|++..+|+.++++|++.|..+...+.+....... ...+..++..++|.|
T Consensus 86 ~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~t 165 (769)
T KOG1650|consen 86 LLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSIT 165 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999998888777543321110 123678899999999
Q ss_pred hHHHHHHHHhhcccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhH
Q 041687 177 SIHVILALLSDLKLLNSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVLIVFGLR 256 (764)
Q Consensus 177 s~~vv~~iL~elkll~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r 256 (764)
|||+++++|.|+|++++++||+++++++++|+.+|.++ ++..+..+... .+... ..|.+...+++++++.+++|
T Consensus 166 sfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll-~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~l~~~~v~~ 239 (769)
T KOG1650|consen 166 SFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILL-ALALAFSSELK---LSPLR--SVWDLVLVIGFVLFLFFVVR 239 (769)
T ss_pred hhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHH-HHHHHHhccCC---CcchH--HHHHHHHHHHHHHheeeehh
Confidence 99999999999999999999999999999999999988 67666655432 22344 67888888999999999999
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHhC-hhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHH
Q 041687 257 PTMFWMMRKTPGGKSPKRGHLWFVNIMLLGCSLLAEITG-LHGYFGAVILGINTPATPPMGASLVDKIESIIWAVFMPCF 335 (764)
Q Consensus 257 ~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~lG-~~~~lGaf~~GL~lp~~~p~~~~l~~kl~~~~~~~~lPiF 335 (764)
|++.|+.||+||++|+++.|+..++..+++++.+++.++ .|+++|||+.|+++|++||+++.+.||+|++..++|+|+|
T Consensus 240 p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~ 319 (769)
T KOG1650|consen 240 PLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLY 319 (769)
T ss_pred hhHHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHhcccccccce---------e--e----ee---c------cChhHHHHHHHHHhhhhHHHHHHHHhhhhcCCCChhHH
Q 041687 336 LINVGRRVNFFSV---------G--L----KT---F------LTVEDAVSLGLLLNCRGLYDVQIFSRAIQQQMITDESF 391 (764)
Q Consensus 336 F~~~Gl~~dl~~l---------i--~----il---g------~~~~~a~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~f 391 (764)
|+.+|+++|+..+ + + ++ + +|++|++.+|++||+||.+|+++++.+++.|+++++.|
T Consensus 320 ~~~~G~k~di~~i~~~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f 399 (769)
T KOG1650|consen 320 FAISGLKTDISRINKWGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGF 399 (769)
T ss_pred HHhhccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchH
Confidence 9999999999643 0 0 01 1 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccccCCCCccceeEEEeeCCCChHHHHHHHHhcC-CCCCCceEEEE
Q 041687 392 AIMVASSVLKSAIIIPLVRVVYDSSRRYVAYRRHTIQHNGRNSELRILACINDPDNVATILNIIQTSN-SPQSPIAVCFM 470 (764)
Q Consensus 392 ~~lvl~~ll~t~i~~plv~~l~~p~~~~~~~~~r~i~~~~~~~e~rILvcv~~~e~~~~li~l~~~~~-~~~s~~~v~~l 470 (764)
++++++++++|.+++|+++.+|||.|+|..|++|++|+.++++|+|||+|+|+++|++++++++|++. ++++|.++|++
T Consensus 400 ~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~l 479 (769)
T KOG1650|consen 400 TVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYAL 479 (769)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 66669999999
Q ss_pred EeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHhcCCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEE
Q 041687 471 NLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHYQKGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVI 550 (764)
Q Consensus 471 hlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlII 550 (764)
|++||.+|+.|++++|+.+...........++++..+|+.|++.++++|.++++|++||+++||+|||.+|.++++++|+
T Consensus 480 hlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~lii 559 (769)
T KOG1650|consen 480 HLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVSLII 559 (769)
T ss_pred eeeecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCcEEE
Confidence 99999999999999997751111222344567999999999985457899999999999999999999999999999999
Q ss_pred eccccC-----C----ChhhHHHHHHhhhcCCcceEEEeecCCCCCCCcccccCcceeEEEeeccCcchHHHHHHHHHHh
Q 041687 551 LPFKRA-----D----SPQIRTVTKNVIKLAPCSVGILYYRGLFMDPKPIFSRQLTISVCVLFIGGPDDREALAYGARMV 621 (764)
Q Consensus 551 lp~h~s-----~----~~~~~~~n~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~i~~~f~gG~ddreAl~~a~rma 621 (764)
+|||+. . +..+|.+|++|+++|||||||++|||..+ .......+..++|+++|+||+||||||++++||+
T Consensus 560 lpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~-~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~rm~ 638 (769)
T KOG1650|consen 560 LPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRR-SGVTQKRGSSYKVVVLFLGGKDDREALALAKRMA 638 (769)
T ss_pred eehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCccc-ccceecccceeEEEEEecCChhhHHHHHHHHHHh
Confidence 999993 1 67899999999999999999999998221 1111222367899999999999999999999999
Q ss_pred hCCCeEEEEEEeeecCCCCCC---CcchhhhHHHHHHHH-HhcccCCCcEEEE-EeeecChhhHHHHHHhhcCCccEEEE
Q 041687 622 ENHSIMLTIIRFIAMNHTTND---NLIEESCDLNMINGF-RMTCINNSNVEYI-TRSIKDGAETAGVLNAIGDDFDLILV 696 (764)
Q Consensus 622 ~~~~v~ltvlr~~~~~~~~~~---~~~e~~~d~~~~~e~-~~~~~~~~~v~y~-e~~V~~g~~~~~~i~~~~~~~DLiiV 696 (764)
+||.+++||+||+..+...++ +++++++|++..+++ +..+.++.++.|. |+.|++|.||.++++++.++|||++|
T Consensus 639 ~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~~~ydL~iv 718 (769)
T KOG1650|consen 639 ENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSITEDYDLFIV 718 (769)
T ss_pred hCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhccccceEEE
Confidence 999999999999976543333 478888999999998 6555566678888 69999999999999999999999999
Q ss_pred eccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEeecccc
Q 041687 697 GRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQQQASI 746 (764)
Q Consensus 697 Gr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvqq~~~~ 746 (764)
||+++.+++.+.|++||+||||||+|||.|+|+||.++.||||+|||.+.
T Consensus 719 Gr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~~ 768 (769)
T KOG1650|consen 719 GRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLYS 768 (769)
T ss_pred ecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeecC
Confidence 99999999999999999999999999999999999999999999998753
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=1.5e-43 Score=412.79 Aligned_cols=348 Identities=18% Similarity=0.201 Sum_probs=288.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhh
Q 041687 37 NLIIPITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSV 116 (764)
Q Consensus 37 ~~llqi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gl 116 (764)
.+++|+.+++.++.++..++||+|+|+++|||++|+++||+++|.+. ..+.++.++++|++++||.+|+
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~-----------~~~~i~~laelGvv~LlF~iGL 73 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT-----------DVESILHFAEFGVVLMLFVIGL 73 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC-----------CHHHHHHHHHHHHHHHHHHHHh
Confidence 48899999999999999999999999999999999999999999842 2456899999999999999999
Q ss_pred ccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccccChhH
Q 041687 117 RIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLNSELG 196 (764)
Q Consensus 117 e~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~G 196 (764)
|+|++.+++.+|+++.+|..++++|+++++.++++++. .+..++++|.+++.||++++.++|+|+|+++|+.|
T Consensus 74 El~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~-------~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G 146 (621)
T PRK03562 74 ELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGL-------RWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMG 146 (621)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchH
Confidence 99999999999999999999999999988877766642 24678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHhcCCCCCC
Q 041687 197 RLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFL----SLTFIVVLIVFGLRPTMFWMMRKTPGGKSP 272 (764)
Q Consensus 197 ~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~ 272 (764)
|.+++.++++|+.+|+++ +++..+...... .+... .++.++ ..++++++..++.||+++|+.++. .
T Consensus 147 ~~~l~~ll~~Dl~~i~ll-~l~~~l~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-----~ 216 (621)
T PRK03562 147 RSAFAILLFQDIAAIPLV-AMIPLLAASGAS--TTLGA--FALSALKVAGALALVVLGGRYVTRPALRFVARSG-----L 216 (621)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHccCCCc--cchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----C
Confidence 999999999999999988 666544432110 01111 122222 222233334455666666655432 4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccccce----
Q 041687 273 KRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPPMGASLVDKIESIIWAVFMPCFLINVGRRVNFFSV---- 348 (764)
Q Consensus 273 ~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~~~~l~~kl~~~~~~~~lPiFF~~~Gl~~dl~~l---- 348 (764)
+|.++..+++++++++++++.+|+|+++|||++|+++++. ++++++++++++| .++|+|+||+++|+++|+..+
T Consensus 217 ~e~~~~~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~-~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~~~ 294 (621)
T PRK03562 217 REVFTAVALFLVFGFGLLMEEVGLSMALGAFLAGVLLASS-EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLENP 294 (621)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHHH
Confidence 5788888888999999999999999999999999999996 6899999999999 799999999999999998654
Q ss_pred --e------eee-------------ccChhHHHHHHHHHhhhhHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHH
Q 041687 349 --G------LKT-------------FLTVEDAVSLGLLLNCRGLYDVQIFSRAIQQQMITDESFAIMVASSVLKSAIIIP 407 (764)
Q Consensus 349 --i------~il-------------g~~~~~a~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~p 407 (764)
+ .++ ++++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++ |++.+|
T Consensus 295 ~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~l-S~~~tP 373 (621)
T PRK03562 295 LRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVAL-SMAATP 373 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHH
Confidence 0 001 189999999999999999999999999999999999999999987776 666667
Q ss_pred HHHHHhcc
Q 041687 408 LVRVVYDS 415 (764)
Q Consensus 408 lv~~l~~p 415 (764)
++..+|++
T Consensus 374 ~l~~~~~~ 381 (621)
T PRK03562 374 LLLVLLDR 381 (621)
T ss_pred HHHHhhhH
Confidence 76666654
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=410.75 Aligned_cols=355 Identities=15% Similarity=0.183 Sum_probs=295.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhc
Q 041687 38 LIIPITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVR 117 (764)
Q Consensus 38 ~llqi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle 117 (764)
++..+.++++++.+++.++||+|+|++++||++|+++||+++|.+. ..+.++.++++|++++||.+|+|
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~-----------~~~~~~~la~lGli~llF~~Gle 75 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA-----------DTKLAPELAELGVILLMFGVGLH 75 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc-----------chHHHHHHHHHHHHHHHHHhHhc
Confidence 3456788899999999999999999999999999999999999732 24678999999999999999999
Q ss_pred cChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccccChhHH
Q 041687 118 IDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLNSELGR 197 (764)
Q Consensus 118 ~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~G~ 197 (764)
+|++.+++.++..+..++.++++|+++++++++.+.. .+..++++|+++|.||++++.++|+|+|+++++.||
T Consensus 76 ~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~ 148 (558)
T PRK10669 76 FSLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGW-------SLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQ 148 (558)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchH
Confidence 9999999998888888888999999888877766642 246778899999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcch--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCch
Q 041687 198 LAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFK--HAALLMFLSLTFIVVLIVFGLRPTMFWMMRKTPGGKSPKRG 275 (764)
Q Consensus 198 lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~ 275 (764)
+++++++++|+.+|+++ .+...+.........+... ....+.++..+++++++.++.|++.+|+.++.++.+ .+|.
T Consensus 149 ~~l~~~~~~Dl~~i~~l-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~ 226 (558)
T PRK10669 149 IAIGWLIVEDLVMVLTL-VLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SREL 226 (558)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchH
Confidence 99999999999999888 6654433211100011111 013355566677777888999999999999887654 5788
Q ss_pred HHHHHHHHHHHHHHH-HHHhChhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccccce------
Q 041687 276 HLWFVNIMLLGCSLL-AEITGLHGYFGAVILGINTPATPPMGASLVDKIESIIWAVFMPCFLINVGRRVNFFSV------ 348 (764)
Q Consensus 276 ~~~~il~~~l~~~~~-ae~lG~~~~lGaf~~GL~lp~~~p~~~~l~~kl~~~~~~~~lPiFF~~~Gl~~dl~~l------ 348 (764)
++..+++.++++++. ++.+|+|+++|||++|+++|+. |.++++.+...++ .++|+|+||+++|+++|+..+
T Consensus 227 ~~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~~~~~ 304 (558)
T PRK10669 227 FTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQQPLA 304 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHHHHHH
Confidence 888888888877764 6999999999999999999986 6788888877776 789999999999999998644
Q ss_pred ------eeee-------------ccChhHHHHHHHHHhhhhHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q 041687 349 ------GLKT-------------FLTVEDAVSLGLLLNCRGLYDVQIFSRAIQQQMITDESFAIMVASSVLKSAIIIPLV 409 (764)
Q Consensus 349 ------i~il-------------g~~~~~a~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~plv 409 (764)
+.++ ++++|+++.+|++|++||+++++++..+++.|+++++.|+++++++++|++++|.+.
T Consensus 305 ~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~ 384 (558)
T PRK10669 305 VLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLF 384 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 179999999999999999999999999999999999999999999999888877777
Q ss_pred HHHhc
Q 041687 410 RVVYD 414 (764)
Q Consensus 410 ~~l~~ 414 (764)
++..+
T Consensus 385 ~~~~~ 389 (558)
T PRK10669 385 TLLER 389 (558)
T ss_pred HHhhH
Confidence 77654
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=6.5e-43 Score=406.89 Aligned_cols=348 Identities=18% Similarity=0.233 Sum_probs=286.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhh
Q 041687 37 NLIIPITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSV 116 (764)
Q Consensus 37 ~~llqi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gl 116 (764)
-++.|+.+++.++.++..+++|+|+|++++|+++|+++||+++|.+. ..+.+..++++|++++||.+|+
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~-----------~~~~i~~laelGvv~LLF~iGL 73 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS-----------DVDEILHFSELGVVFLMFIIGL 73 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC-----------cHHHHHHHHHHHHHHHHHHHHh
Confidence 35778999999999999999999999999999999999999999842 2356789999999999999999
Q ss_pred ccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccccChhH
Q 041687 117 RIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLNSELG 196 (764)
Q Consensus 117 e~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~G 196 (764)
|+|++.+++.+|+++.+|..++++|+++++.+.++++ + .+..++++|.+++.||++++.++|+|+|+++++.|
T Consensus 74 el~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g-~------~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G 146 (601)
T PRK03659 74 ELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTD-F------SWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESG 146 (601)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c------CHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchH
Confidence 9999999999999999999999999987766555442 2 24678889999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcch-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCch
Q 041687 197 RLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFK-HAALLMFLSLTFIVVLIVFGLRPTMFWMMRKTPGGKSPKRG 275 (764)
Q Consensus 197 ~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~ 275 (764)
|++++.++++|+.+|+++ ++...+..... . ... ....+.++..++++++..++.||+.+|+.+. +.+|.
T Consensus 147 ~~~l~vll~~Di~~i~ll-~l~~~l~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~ 216 (601)
T PRK03659 147 QLGFSVLLFQDLAVIPAL-ALVPLLAGSAD---E-HFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREV 216 (601)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhcCCC---c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchH
Confidence 999999999999999888 66654443221 1 111 0022222222233333445556666665443 24688
Q ss_pred HHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccccce-------
Q 041687 276 HLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPPMGASLVDKIESIIWAVFMPCFLINVGRRVNFFSV------- 348 (764)
Q Consensus 276 ~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~~~~l~~kl~~~~~~~~lPiFF~~~Gl~~dl~~l------- 348 (764)
++..+++++++++++++.+|+|+++|||++|+++++. +++++++++++++ .++|+|+||+++||++|+..+
T Consensus 217 ~~~~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s-~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~~~~~i 294 (601)
T PRK03659 217 FTAAALLLVLGSALFMDALGLSMALGTFIAGVLLAES-EYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYTHLLWV 294 (601)
T ss_pred HHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-chHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHHhHHHH
Confidence 8888899999999999999999999999999999996 6899999999999 799999999999999998654
Q ss_pred e-----ee-------------eccChhHHHHHHHHHhhhhHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 041687 349 G-----LK-------------TFLTVEDAVSLGLLLNCRGLYDVQIFSRAIQQQMITDESFAIMVASSVLKSAIIIPLVR 410 (764)
Q Consensus 349 i-----~i-------------lg~~~~~a~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~plv~ 410 (764)
+ .+ .++++++++.+|++|++||+++++++..+.+.|+++++.|+.+++++++ |++.+|++.
T Consensus 295 l~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~l-s~~~tP~l~ 373 (601)
T PRK03659 295 LISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTL-SMMTTPLLM 373 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHH
Confidence 0 00 0189999999999999999999999999999999999999999887777 456677777
Q ss_pred HHhcc
Q 041687 411 VVYDS 415 (764)
Q Consensus 411 ~l~~p 415 (764)
.+|+|
T Consensus 374 ~~~~~ 378 (601)
T PRK03659 374 KLIDK 378 (601)
T ss_pred HHhHH
Confidence 77765
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=376.13 Aligned_cols=356 Identities=19% Similarity=0.298 Sum_probs=297.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHh
Q 041687 36 PNLIIPITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLS 115 (764)
Q Consensus 36 p~~llqi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~G 115 (764)
...+.|+.++++++.+.+.++||+|+|+++||+++|+++||.+++.+ .+..+.++.++++|++++||.+|
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~----------~~~~~~i~~laelGvi~LlF~~G 74 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI----------IESSEIIELLAELGVVFLLFLIG 74 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc----------CCchHHHHHHHHHhHHHHHHHHH
Confidence 35788999999999999999999999999999999999999555442 24688999999999999999999
Q ss_pred hccChhHHHhccch-hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccccCh
Q 041687 116 VRIDIRIIQKSGRL-AIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLNSE 194 (764)
Q Consensus 116 le~d~~~l~~~~~~-~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~ 194 (764)
+|+|++.+||.+|+ +...+..++..|++++....+...++ .+..++++|.+++.||+++++++|+|+|.++++
T Consensus 75 LE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~------~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~ 148 (397)
T COG0475 75 LEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGL------SLIAALFLGAALALSSTAIVLKILMELGLLKTR 148 (397)
T ss_pred HCcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhcc------ChHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999 88888899999988886544431222 246689999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCc
Q 041687 195 LGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVLIVFGLRPTMFWMMRKTPGGKSPKR 274 (764)
Q Consensus 195 ~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e 274 (764)
.||+++++++++|+.+++++ ++.....+++. .+... ++..+....++.++..+..|++.+|+.|+.... +.+|
T Consensus 149 ~g~~~l~~~i~~Di~~i~lL-ai~~~l~~~g~---~~~~~--~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e 221 (397)
T COG0475 149 EGQLILGALVFDDIAAILLL-AIVPALAGGGS---GSVGF--ILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSE 221 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHccCCC---ccHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchH
Confidence 99999999999999999999 77777665433 22222 345555666666666666677777777775432 2468
Q ss_pred hHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccccce-----e
Q 041687 275 GHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPPMGASLVDKIESIIWAVFMPCFLINVGRRVNFFSV-----G 349 (764)
Q Consensus 275 ~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~~~~l~~kl~~~~~~~~lPiFF~~~Gl~~dl~~l-----i 349 (764)
..+.+++..++.+++++|.+|+|+++|||++|+++++.....++++++++++.+++|+|+||+.+|+++|+..+ .
T Consensus 222 ~~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~ 301 (397)
T COG0475 222 LFILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLL 301 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHH
Confidence 88999999999999999999999999999999999998543379999999998889999999999999998766 0
Q ss_pred -------eee-------------ccChhHHHHHHHHHhhhhHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q 041687 350 -------LKT-------------FLTVEDAVSLGLLLNCRGLYDVQIFSRAIQQQMITDESFAIMVASSVLKSAIIIPLV 409 (764)
Q Consensus 350 -------~il-------------g~~~~~a~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~plv 409 (764)
+++ |.++++++..|+.+.++|+++++.++.+.. +.++++.++..+.+++++|.+.+++.
T Consensus 302 ~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~ 380 (397)
T COG0475 302 ILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLT 380 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 178999999999999999999999998876 67889999998888888777777667
Q ss_pred HHHhcc
Q 041687 410 RVVYDS 415 (764)
Q Consensus 410 ~~l~~p 415 (764)
+.+++.
T Consensus 381 ~~~~~~ 386 (397)
T COG0475 381 PILLKR 386 (397)
T ss_pred HHHHHH
Confidence 766643
No 7
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.1e-35 Score=315.61 Aligned_cols=271 Identities=20% Similarity=0.296 Sum_probs=231.2
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhc
Q 041687 47 ILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKS 126 (764)
Q Consensus 47 ~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~ 126 (764)
+++.+.+.++||+++|++++++++|+++||+++|.+. ..+.++.++++|+++++|.+|+|+|++.+||+
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~-----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~ 70 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS-----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKL 70 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC-----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4577889999999999999999999999999998742 24579999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccccChhHHHHHHHHHH
Q 041687 127 GRLAIVIGVGSFVLS-MIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLNSELGRLAVSSSLI 205 (764)
Q Consensus 127 ~~~~~~ia~~~~~~p-~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~G~lals~a~i 205 (764)
+|+++.+++.++++| +.+++.+++++.. .+..++++|++++.||++++.++++|+|+.+++.||++++++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~ 143 (273)
T TIGR00932 71 RKAAFGVGVLQVLVPGVLLGLLLGHLLGL-------ALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLF 143 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHH
Confidence 999999999999999 6677766665532 24678999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 041687 206 SSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVLIVFGLRPTMFWMMRKTPGGKSPKRGHLWFVNIMLL 285 (764)
Q Consensus 206 ~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l 285 (764)
||+++|+++ .+......+.. .+... ..+.+...+++.++.+++.|+..+|+.|+.++.++ +|.++..++.+++
T Consensus 144 ~D~~~i~~l-~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 216 (273)
T TIGR00932 144 QDIAVVPLL-ALLPLLATSAS---TEHVA--LALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMF 216 (273)
T ss_pred HHHHHHHHH-HHHHHHhcCCC---cchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHH
Confidence 999999998 67665544322 11122 33444455556666677888889999988776543 4788888999999
Q ss_pred HHHHHHHHhChhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 041687 286 GCSLLAEITGLHGYFGAVILGINTPATPPMGASLVDKIESIIWAVFMPCFLINVGRRVN 344 (764)
Q Consensus 286 ~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~~~~l~~kl~~~~~~~~lPiFF~~~Gl~~d 344 (764)
++++++|.+|.|+++|||++|+++++. +.++++.++++++. ++|+|+||+++|+++|
T Consensus 217 ~~~~la~~~g~s~~lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 217 GSAYFADLLGLSMALGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 999999999999999999999999997 45788999999998 9999999999999987
No 8
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.3e-35 Score=344.57 Aligned_cols=357 Identities=12% Similarity=0.066 Sum_probs=292.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHH
Q 041687 35 IPNLIIPITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLL 114 (764)
Q Consensus 35 lp~~llqi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~ 114 (764)
+-.++++++++++++.+++.+++|+++|.+++++++|+++||+++|.+. | +..+..+.++++|+++++|..
T Consensus 4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~-------~--~~~~~~~~i~~l~L~~iLF~~ 74 (562)
T PRK05326 4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ-------F--DNYPLAYLVGNLALAVILFDG 74 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc-------c--CcHHHHHHHHHHHHHHHHHcC
Confidence 3467889999999999999999999999999999999999999998632 1 245688999999999999999
Q ss_pred hhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhccc-ccC
Q 041687 115 SVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKL-LNS 193 (764)
Q Consensus 115 Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkl-l~s 193 (764)
|+|+|++.+|+.+++++.+++.++++|++++...++++.+. .+..++++|++++.||++++.++++|+|+ +++
T Consensus 75 Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~------~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~ 148 (562)
T PRK05326 75 GLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGL------DWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKE 148 (562)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHHHhhhhccCchHHHHHHHhccCCCcch
Confidence 99999999999999999999999999998755444444333 25788999999999999999999999996 799
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCC
Q 041687 194 ELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVLIVFGLRPTMFWMMRKTPGGKSPK 273 (764)
Q Consensus 194 ~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~ 273 (764)
++|+++.+++.+||.++++++ .+...+...+.. ..... .++.++..+++.++.+++.++++.|+.+|.... .+
T Consensus 149 ~v~~~l~~eS~~nD~~ai~l~-~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~ 221 (562)
T PRK05326 149 RVASTLEIESGSNDPMAVFLT-ITLIELITGGET--GLSWG--FLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AE 221 (562)
T ss_pred hHHhHhhhhhhcccHHHHHHH-HHHHHHHhCCCC--cchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hh
Confidence 999999999999999999888 555544333220 11122 234445555566667788888999999887431 24
Q ss_pred chHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccccce-----
Q 041687 274 RGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPPMGASLVDKIESIIWAVFMPCFLINVGRRVNFFSV----- 348 (764)
Q Consensus 274 e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~~~~l~~kl~~~~~~~~lPiFF~~~Gl~~dl~~l----- 348 (764)
+.+..+++++++++++++|.+|.|+++|+|++|+++++.++..+.-.+++.....+++.|+||+++|+.+|+..+
T Consensus 222 ~~~~i~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~ 301 (562)
T PRK05326 222 GLYPILVLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIAL 301 (562)
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 567888899999999999999999999999999999998655555555565555789999999999999997654
Q ss_pred ----e----eeec-------------cChhHHHHHHHHHhhhhHHHHHHHHhhhhcCCCC-hhHHHHHHHHHHHHHHHHH
Q 041687 349 ----G----LKTF-------------LTVEDAVSLGLLLNCRGLYDVQIFSRAIQQQMIT-DESFAIMVASSVLKSAIII 406 (764)
Q Consensus 349 ----i----~ilg-------------~~~~~a~~lg~~m~~kG~~~l~~~~~~~~~~~i~-~~~f~~lvl~~ll~t~i~~ 406 (764)
+ .+++ +++||++.+|+. ++||.++++++..+...|+.+ +..|.++.+++++++.+.+
T Consensus 302 ~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g 380 (562)
T PRK05326 302 PALLLALFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQG 380 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHH
Confidence 0 0111 899999999994 899999999999999999986 5678888888999888888
Q ss_pred HHHHHHhc
Q 041687 407 PLVRVVYD 414 (764)
Q Consensus 407 plv~~l~~ 414 (764)
+.++.+.|
T Consensus 381 ~tl~~~a~ 388 (562)
T PRK05326 381 TTLPWAAR 388 (562)
T ss_pred hhHHHHHH
Confidence 88887663
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=2.5e-35 Score=327.78 Aligned_cols=345 Identities=25% Similarity=0.377 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHH
Q 041687 44 SVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRII 123 (764)
Q Consensus 44 lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l 123 (764)
++++.+.+.+.++||+++|.+++|+++|+++||.+++.+++. ....+.++++|+.+++|.+|+|+|.+.+
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~----------~~~~~~l~~i~l~~llF~~G~~~d~~~l 72 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPD----------NPSFELLAEIGLAFLLFEAGLELDIKEL 72 (380)
T ss_dssp -------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG--
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccch----------hhHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 344556667778999999999999999999999988864321 4678899999999999999999999999
Q ss_pred HhccchhHHHHHHHHHHHHHH-HHHHHHHH--hhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccccChhHHHHH
Q 041687 124 QKSGRLAIVIGVGSFVLSMIA-TILASSFV--KGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLNSELGRLAV 200 (764)
Q Consensus 124 ~~~~~~~~~ia~~~~~~p~~~-g~~~~~~l--~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~G~lal 200 (764)
|+.+|+++.+++.++.+|+++ ++.+++++ .+. .+..++++|.+++.||++++.++++|.+..+++.+++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~ 146 (380)
T PF00999_consen 73 RRNWRRALALGLVGFLLPFILVGFLLSFFLFILGL------SWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLL 146 (380)
T ss_dssp -----------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHT
T ss_pred ccccccccccccceeeehhhHHHHHHHHhhccchh------hhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhh
Confidence 999999999999999999998 77666432 111 357889999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCchHHHHH
Q 041687 201 SSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVLIVFGLRPTMFWMMRKTPGGKSPKRGHLWFV 280 (764)
Q Consensus 201 s~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~i 280 (764)
+++++||+++++++ .+.....+.+.. .+... ....++..+...++..++.+.+..|+.|+. ++.++.+..++
T Consensus 147 ~~~~i~d~~~i~~~-~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 218 (380)
T PF00999_consen 147 SESVINDIIAIILL-SILISLAQASGQ--SSLGQ--LLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLV 218 (380)
T ss_dssp TTTTTTTTTTTTTT------------------------------------------------------------------
T ss_pred hhchhhccchhhhh-hhhhhhhccccc--ccccc--hhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHH
Confidence 99999999999888 565554421110 11111 222233333333333344444444444442 23457888999
Q ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccccce----------e-
Q 041687 281 NIMLLGCSLLAEITGLHGYFGAVILGINTPATPPMGASLVDKIESIIWAVFMPCFLINVGRRVNFFSV----------G- 349 (764)
Q Consensus 281 l~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~~~~l~~kl~~~~~~~~lPiFF~~~Gl~~dl~~l----------i- 349 (764)
+++++.+++++|.+|.++++|+|++|+++++. +.++++.|+++++.++++.|+||+++|+++|+..+ +
T Consensus 219 l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~~-~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~ 297 (380)
T PF00999_consen 219 LALILLLYGLAEILGLSGILGAFIAGLILSNS-PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLL 297 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhccccccccccccceeeeeehccccc-cccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHH
Confidence 99999999999999999999999999999965 57788999999998899999999999999995332 0
Q ss_pred ---e-ee-------------ccChhHHHHHHHHHhhhhHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 041687 350 ---L-KT-------------FLTVEDAVSLGLLLNCRGLYDVQIFSRAIQQQMITDESFAIMVASSVLKSAIIIPLVRVV 412 (764)
Q Consensus 350 ---~-il-------------g~~~~~a~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~plv~~l 412 (764)
. ++ +.++||+..+|+.+++||+++++++..+.+.|.++++.+++++.++++++.+.|+.++.+
T Consensus 298 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l 377 (380)
T PF00999_consen 298 LLIAILLGKFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPL 377 (380)
T ss_dssp -------------------------HHHHTTTTSS--HHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHhhhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHH
Confidence 0 01 178999999999999999999999999999999999999999999999888887777765
Q ss_pred h
Q 041687 413 Y 413 (764)
Q Consensus 413 ~ 413 (764)
.
T Consensus 378 ~ 378 (380)
T PF00999_consen 378 L 378 (380)
T ss_dssp -
T ss_pred h
Confidence 4
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-29 Score=254.28 Aligned_cols=356 Identities=16% Similarity=0.228 Sum_probs=279.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHH
Q 041687 33 FNIPNLIIPITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVF 112 (764)
Q Consensus 33 ~~lp~~llqi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF 112 (764)
++.|+. --+..-+..+.+++.+..|+++|+.|||++||++.||..-|.+ ........++++|++++||
T Consensus 3 h~tpli-~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFv-----------ad~~La~~LAelGViLLmF 70 (408)
T COG4651 3 HDTPLI-TTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFV-----------ADQTLAPELAELGVILLMF 70 (408)
T ss_pred CCchHH-HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcc-----------cchhHHHHHHHhhHHHHHH
Confidence 344533 3344456678889999999999999999999999999866653 1244455899999999999
Q ss_pred HHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhccccc
Q 041687 113 LLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLN 192 (764)
Q Consensus 113 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~ 192 (764)
-+|++..++.+......++.-++.++.+....|+.+++.++..+ ...+.+|.++|..|..+..|-|+|+++.+
T Consensus 71 gvGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~-------~~glvfGlaLS~aSTVvllraLqEr~lid 143 (408)
T COG4651 71 GVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSF-------GTGIVFGLALSVASTVVLLRALEERQLID 143 (408)
T ss_pred hcchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCc-------ccceeeeehhhhHHHHHHHHHHHHhcccc
Confidence 99999999999877666666677777777777887777765433 44678899999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhHHHHHHHHHHHHHhcc--CCCCCCCCcch--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Q 041687 193 SELGRLAVSSSLISSAVNCFAVTFTGNSSGQ--AAQAPPPGRFK--HAALLMFLSLTFIVVLIVFGLRPTMFWMMRKTPG 268 (764)
Q Consensus 193 s~~G~lals~a~i~D~~~~ill~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~ 268 (764)
++.||++++--++.|+..++.+ ++..+.+. +... ..... ....+++.....|+.++.++.|++.+|+..+...
T Consensus 144 t~rG~iAiGwLiveDl~mVl~L-vllpa~a~~~g~~~--~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~ 220 (408)
T COG4651 144 TQRGRIAIGWLIVEDLAMVLAL-VLLPALAGVLGQGD--VGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAA 220 (408)
T ss_pred ccCceEEEeehhHHHHHHHHHH-HHhHHHHhhhcccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887 66654432 1110 11111 1233566678889999999999999999988643
Q ss_pred CCCCCchHHHHHHHHHHHHHH-HHHHhChhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 041687 269 GKSPKRGHLWFVNIMLLGCSL-LAEITGLHGYFGAVILGINTPATPPMGASLVDKIESIIWAVFMPCFLINVGRRVNFFS 347 (764)
Q Consensus 269 ~~~~~e~~~~~il~~~l~~~~-~ae~lG~~~~lGaf~~GL~lp~~~p~~~~l~~kl~~~~~~~~lPiFF~~~Gl~~dl~~ 347 (764)
. ..+|.+...+++.+++.++ .++.+|.++.+|||++|+++.+. .+.++..|..-+. .+-|..+||+++||..|+..
T Consensus 221 t-GsrElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~es-elshraa~~slpL-rdaFaVlFFvsVGmlf~P~~ 297 (408)
T COG4651 221 T-GSRELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAES-ELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMI 297 (408)
T ss_pred c-CcHHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcch-hhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHH
Confidence 2 2468888899988887665 67889999999999999999987 4677776666565 78899999999999999865
Q ss_pred e------------eeee-------------ccChhHHHHHHHHHhhhhHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHH
Q 041687 348 V------------GLKT-------------FLTVEDAVSLGLLLNCRGLYDVQIFSRAIQQQMITDESFAIMVASSVLKS 402 (764)
Q Consensus 348 l------------i~il-------------g~~~~~a~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t 402 (764)
+ +++. |.|.|.++.++..+.+-|+++++++..|.+.+++++..-...+ +.-+.+
T Consensus 298 l~~~pl~vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~Lvl-agails 376 (408)
T COG4651 298 LIQQPLAVLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVL-AGAILS 376 (408)
T ss_pred hhcchHHHHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHH-HHHHHH
Confidence 5 1112 2899999999999999999999999999999999955555444 444447
Q ss_pred HHHHHHHHHHhc
Q 041687 403 AIIIPLVRVVYD 414 (764)
Q Consensus 403 ~i~~plv~~l~~ 414 (764)
++..|+.....+
T Consensus 377 Il~nPllf~~~d 388 (408)
T COG4651 377 ILLNPLLFALLD 388 (408)
T ss_pred HHHhHHHHHHHH
Confidence 777777665543
No 11
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.93 E-value=1.8e-23 Score=240.16 Aligned_cols=342 Identities=12% Similarity=0.079 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhH
Q 041687 43 TSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRI 122 (764)
Q Consensus 43 ~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~ 122 (764)
..+++++.....+++|+++|..++++++|+++||..++. .. +.+ . +.+..+++.+++|..|+++|++.
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~-~~-------~~~-~---~~~~~~~Lp~lLF~~g~~~~~~~ 71 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLP-EV-------PLD-R---EIVLFLFLPPLLFEAAMNTDLRE 71 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccC-CC-------CCC-H---HHHHHHHHHHHHHHHHhcCCHHH
Confidence 344555666778899999999999999999999864432 11 111 1 23345899999999999999999
Q ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccccChhHHHHHHH
Q 041687 123 IQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLNSELGRLAVSS 202 (764)
Q Consensus 123 l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~G~lals~ 202 (764)
++++++..+.+++.++++|++++....+++.+. ++..++++|+++|+|+++++.+++++.|+ ++++.+++.++
T Consensus 72 l~~~~~~i~~la~~~vlit~~~v~~~~~~~~~l------~~~~alllGails~TDpvav~~il~~~~~-p~rl~~il~gE 144 (525)
T TIGR00831 72 LRENFRPIALIAFLLVVVTTVVVGFSLNWILGI------PLALALILGAVLSPTDAVAVLGTFKSIRA-PKKLSILLEGE 144 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHhCCCCHHHHHHHHhcCCC-CHHHHHHHhhh
Confidence 999999999999999999998866665554333 36889999999999999999999999884 78899999999
Q ss_pred HHHHhHHHHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCchHHHHHH
Q 041687 203 SLISSAVNCFAVTFTGNSSGQA-AQAPPPGRFKHAALLMFLSLTFIVVLIVFGLRPTMFWMMRKTPGGKSPKRGHLWFVN 281 (764)
Q Consensus 203 a~i~D~~~~ill~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il 281 (764)
+++||..+++++ .+...+..+ +. .+... ....++..++..+++++++..+..|+.++..+. +.....+++
T Consensus 145 SllND~~alvlf-~~~~~~~~~~~~---~~~~~--~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l 215 (525)
T TIGR00831 145 SLLNDGAALVVF-AIAVAVALGKGV---FDPLN--AALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTI 215 (525)
T ss_pred hhhcchHHHHHH-HHHHHHHhcCCC---CcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHH
Confidence 999999999998 666554432 21 12222 233333333333444444555566666553322 245677888
Q ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCC---hhHH---HHHHHHHHHHHHHHHHHHHhccccccc-----c---
Q 041687 282 IMLLGCSLLAEITGLHGYFGAVILGINTPATPPM---GASL---VDKIESIIWAVFMPCFLINVGRRVNFF-----S--- 347 (764)
Q Consensus 282 ~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~---~~~l---~~kl~~~~~~~~lPiFF~~~Gl~~dl~-----~--- 347 (764)
++.+++++++|.+|.|+++++|++|+++++..+. ..+. .+.+-.....++.+++|+++|+++... .
T Consensus 216 ~~~~~~y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~ 295 (525)
T TIGR00831 216 LAPFAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEIL 295 (525)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 8899999999999999999999999999986443 1122 223334457888999999999997520 0
Q ss_pred -e-----e-----ee-----------ec----------------cChhHHHHHHHHHhhhhHHHHHHHHhhh---hcCC-
Q 041687 348 -V-----G-----LK-----------TF----------------LTVEDAVSLGLLLNCRGLYDVQIFSRAI---QQQM- 385 (764)
Q Consensus 348 -l-----i-----~i-----------lg----------------~~~~~a~~lg~~m~~kG~~~l~~~~~~~---~~~~- 385 (764)
. . .+ +. +++|+.+.+++ .+.||.+.++++..-- ..|.
T Consensus 296 ~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~ 374 (525)
T TIGR00831 296 VAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMA 374 (525)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCC
Confidence 0 0 00 00 35789999999 7899999998774321 1111
Q ss_pred C------ChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041687 386 I------TDESFAIMVASSVLKSAIIIPLVRVVY 413 (764)
Q Consensus 386 i------~~~~f~~lvl~~ll~t~i~~plv~~l~ 413 (764)
+ -.-+|.++++++++.....||+++++-
T Consensus 375 ~p~r~~i~~~~~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 375 FPARYELVFLAAGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 1 123455666666676666777777764
No 12
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.92 E-value=1.6e-22 Score=233.12 Aligned_cols=329 Identities=13% Similarity=0.078 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh-ccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhh
Q 041687 38 LIIPITSVTILSAIFWLILR-PLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSV 116 (764)
Q Consensus 38 ~llqi~lil~~~~l~~~ll~-rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gl 116 (764)
.++-++..+++..++..++| |+.+|..+.++++|+++||.++|.++|.-. .......++ ++++++++.+|.+|+
T Consensus 14 ~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~----g~~d~i~le-IteIvL~I~LFa~Gl 88 (810)
T TIGR00844 14 AYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSW----GNTDSITLE-ISRILLCLQVFAVSV 88 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhc----ccchHHHHH-HHHHHHHHHHHHHHH
Confidence 34445555555566666666 999999999999999999999987554200 001233444 999999999999999
Q ss_pred ccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHh---hccccc
Q 041687 117 RIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFV-KGAIQLEENLGNSLKTVAALESTISIHVILALLS---DLKLLN 192 (764)
Q Consensus 117 e~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l-~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~---elkll~ 192 (764)
+++.+.+++.++..+.+.+.++.+.++++.++++++ .+. .|..++++|+++++|++.....+++ ..+ +.
T Consensus 89 ~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL------~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP 161 (810)
T TIGR00844 89 ELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL------NFPASLLMGACITATDPVLAQSVVSGTFAQK-VP 161 (810)
T ss_pred hCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CC
Confidence 999999999999999999999988888887777766 333 3678999999999999877777776 234 56
Q ss_pred ChhHHHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCCCCcc-h---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Q 041687 193 SELGRLAVSSSLISSAVNCFAVTFTGNSSGQ-AAQAPPPGRF-K---HAALLMFLSLTFIVVLIVFGLRPTMFWMMRKTP 267 (764)
Q Consensus 193 s~~G~lals~a~i~D~~~~ill~~~~~~~~~-~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~~ 267 (764)
.++..++.+.+.+||.++++++ .+...+.. .+.. +... . ..++|.++..+++.++++++.+.++.|+.+|..
T Consensus 162 ~rLR~lL~~ESGlNDGlAfpfv-~LaL~ll~~~~~g--~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~ 238 (810)
T TIGR00844 162 GHLRNLLSCESGCNDGLAFPFV-FLSMDLLLYPGRG--GEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNI 238 (810)
T ss_pred hHHHhHHhhhhhcccHHHHHHH-HHHHHHHhccCcc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7888999999999999998776 44443332 1110 1111 1 123455555555555666666666666655543
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCChhH-HHHHHHHHHHHHHHHHHHHHhccccccc
Q 041687 268 GGKSPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPPMGAS-LVDKIESIIWAVFMPCFLINVGRRVNFF 346 (764)
Q Consensus 268 ~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~~~~-l~~kl~~~~~~~~lPiFF~~~Gl~~dl~ 346 (764)
. ..+.++.+.++++++++.+++.+|.++++++|++|+++.+..++.+. -...+..+...++..++|+++|+.+.+.
T Consensus 239 i---~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~ 315 (810)
T TIGR00844 239 I---DRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWK 315 (810)
T ss_pred c---chhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHh
Confidence 2 23566777888888899999999999999999999999986543322 2233555567788999999999998432
Q ss_pred ce------------------eee-------------ec--cChhHHHHHHHHHhhhhHHHHHHHHhhhhcCC
Q 041687 347 SV------------------GLK-------------TF--LTVEDAVSLGLLLNCRGLYDVQIFSRAIQQQM 385 (764)
Q Consensus 347 ~l------------------i~i-------------lg--~~~~~a~~lg~~m~~kG~~~l~~~~~~~~~~~ 385 (764)
.+ +++ ++ .+++|++++|+ ..+||+.+++++.++++.+.
T Consensus 316 ~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 316 DFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 11 000 01 57999999999 89999999999999988775
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.1e-18 Score=192.95 Aligned_cols=356 Identities=13% Similarity=0.134 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhh
Q 041687 37 NLIIPITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSV 116 (764)
Q Consensus 37 ~~llqi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gl 116 (764)
..+++..+++.+..+...+.+|+..|.+...++.|++.||.+++..+++ ....-+.+-.+.+..++|..|+
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~---------~~~~~el~~~l~l~ilLf~~g~ 76 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPD---------LELDPELFLVLFLAILLFAGGL 76 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcccccc---------ccCChHHHHHHHHHHHHHHhHh
Confidence 4677888899999999999999999999999999999999988874432 1222233348999999999999
Q ss_pred ccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccccChhH
Q 041687 117 RIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLNSELG 196 (764)
Q Consensus 117 e~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~G 196 (764)
++|.+.++|.++..+.+++.+++++.+......+++.+.. ++..++.+|+++|+|++.++.++.++.| ...++.
T Consensus 77 ~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i-----~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~ 150 (429)
T COG0025 77 ELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGI-----PLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIR 150 (429)
T ss_pred cCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----hHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHH
Confidence 9999999999999999999999999876665555553321 4678999999999999999999999977 688999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcch--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCc
Q 041687 197 RLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFK--HAALLMFLSLTFIVVLIVFGLRPTMFWMMRKTPGGKSPKR 274 (764)
Q Consensus 197 ~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e 274 (764)
++..+++++||..+++++ .+......+... .+... ...++..+..++..++..++.+++.+++.+|. . . ...
T Consensus 151 ~iL~gESl~ND~~giv~f-~~~l~~~~~~~~--~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~-~-~-~~~ 224 (429)
T COG0025 151 TILEGESLLNDGVGIVLF-KVALAALLGTGA--FSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRG-W-T-SPL 224 (429)
T ss_pred HHHHHHHHhhhHHHHHHH-HHHHHHHhccCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-c-c-chH
Confidence 999999999999999998 666555432220 11112 12334444444455555566666666665553 1 1 135
Q ss_pred hHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcC---C--CCCCh-hHHHHHHHHHHHHHHHHHHHHHhcccccccce
Q 041687 275 GHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTP---A--TPPMG-ASLVDKIESIIWAVFMPCFLINVGRRVNFFSV 348 (764)
Q Consensus 275 ~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp---~--~~p~~-~~l~~kl~~~~~~~~lPiFF~~~Gl~~dl~~l 348 (764)
.+..+.+...+..+.++|.+|.+++++.+++|++.. . ..+.. +...+.+......++.-+.|+..|++++....
T Consensus 225 ~~~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~ 304 (429)
T COG0025 225 LETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLL 304 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 667889999999999999999999999999998774 1 11112 23333344555788888999999999986443
Q ss_pred --------e-----eee-----------c--------cChhHHHHHHHHHhhhhHHHHHHHHhhhhc-C-----CCChhH
Q 041687 349 --------G-----LKT-----------F--------LTVEDAVSLGLLLNCRGLYDVQIFSRAIQQ-Q-----MITDES 390 (764)
Q Consensus 349 --------i-----~il-----------g--------~~~~~a~~lg~~m~~kG~~~l~~~~~~~~~-~-----~i~~~~ 390 (764)
+ +++ + .++++++.+++ -++||.+.++++...... . .+-.-.
T Consensus 305 ~~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~ 383 (429)
T COG0025 305 LALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIV 383 (429)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHH
Confidence 0 001 0 47899999999 799999999988664422 1 222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 041687 391 FAIMVASSVLKSAIIIPLVRVVYD 414 (764)
Q Consensus 391 f~~lvl~~ll~t~i~~plv~~l~~ 414 (764)
|.++++++++.+...+|+.+++..
T Consensus 384 ~~vIl~Sl~v~g~t~~~l~~~~~~ 407 (429)
T COG0025 384 FLVILFSLLVQGLTLPPLAKKLEV 407 (429)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhcc
Confidence 566666666666667777776653
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.1e-18 Score=181.02 Aligned_cols=351 Identities=12% Similarity=0.064 Sum_probs=273.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHH
Q 041687 34 NIPNLIIPITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFL 113 (764)
Q Consensus 34 ~lp~~llqi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~ 113 (764)
+.-.+++--.++++++.+...++.|+|.|..+-.+..|++.|--++|.+. | +....-..++++++++++|.
T Consensus 4 t~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~-------f--dNy~~Ay~vg~lALaiILfd 74 (574)
T COG3263 4 TINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIE-------F--DNYPFAYMVGNLALAIILFD 74 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccc-------c--CccHHHHHHHHHHHHHHhhc
Confidence 34455555667888899999999999999999999999999999998743 1 34567778999999999999
Q ss_pred HhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccccC
Q 041687 114 LSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLNS 193 (764)
Q Consensus 114 ~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s 193 (764)
.|+..+++.+|...++++.++.+|++++-.+...+++++.+. .|.+.+++|++...|+.+.|..+|.+++ +|.
T Consensus 75 gG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l------~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~e 147 (574)
T COG3263 75 GGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNL------DWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNE 147 (574)
T ss_pred CccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHhhccccHHHHHHHHccCC-hhh
Confidence 999999999999999999999999999987766666666655 3789999999999999999999998888 588
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCC
Q 041687 194 ELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVLIVFGLRPTMFWMMRKTPGGKSPK 273 (764)
Q Consensus 194 ~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~ 273 (764)
+++.+..-.+--||-+++++.-+++.....+++ +-.+. .+..++.-.++.++..+....+..|+++|+.-. +
T Consensus 148 rv~stLEiESGtNDPmAvfLTitlieli~~get---~l~~~--~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~ 219 (574)
T COG3263 148 RVASTLEIESGSNDPMAVFLTITLIELIAGGET---NLSWG--FLLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---S 219 (574)
T ss_pred hhhhhEEeecCCCCceeeehhHHHHHHHhcccc---ccCHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---c
Confidence 999988889999999998776233333333322 10112 333456667778888888889999999997432 3
Q ss_pred chHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcccccccce--e-
Q 041687 274 RGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPP-MGASLVDKIESIIWAVFMPCFLINVGRRVNFFSV--G- 349 (764)
Q Consensus 274 e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p-~~~~l~~kl~~~~~~~~lPiFF~~~Gl~~dl~~l--i- 349 (764)
..|-.++++..+....+++.+|-|++++.+++|+++.|.+- .++.+.+-.|.+ .++.--+-|...|+..+++.+ +
T Consensus 220 GL~pil~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~ia 298 (574)
T COG3263 220 GLYPILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLPIA 298 (574)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhHhh
Confidence 57888999999999999999999999999999999999852 234666777777 577777888889999987666 1
Q ss_pred ----------ee--------ec-----cChhHHHHHHHHHhhhhHHHHHHHHhhhhcCCCChh-HHHHHHHHHHHHHHHH
Q 041687 350 ----------LK--------TF-----LTVEDAVSLGLLLNCRGLYDVQIFSRAIQQQMITDE-SFAIMVASSVLKSAII 405 (764)
Q Consensus 350 ----------~i--------lg-----~~~~~a~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~-~f~~lvl~~ll~t~i~ 405 (764)
++ ++ .+++|.+.++| ..-||.+.++++.+-.-.|.=+.+ .|++..+.++++-.+.
T Consensus 299 vPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQ 377 (574)
T COG3263 299 IPAILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQ 377 (574)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHc
Confidence 11 12 68899999999 799999999999888777765543 3455544444444444
Q ss_pred HHHHH
Q 041687 406 IPLVR 410 (764)
Q Consensus 406 ~plv~ 410 (764)
+..+.
T Consensus 378 G~tl~ 382 (574)
T COG3263 378 GSTLP 382 (574)
T ss_pred cCcch
Confidence 33333
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.80 E-value=2.3e-17 Score=189.71 Aligned_cols=363 Identities=14% Similarity=0.081 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cc-CCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHH
Q 041687 36 PNLIIPITSVTILSAIFWLILR-PL-GNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFL 113 (764)
Q Consensus 36 p~~llqi~lil~~~~l~~~ll~-rl-~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~ 113 (764)
|..+.-..++..++++...+.. +. ++|..+..++.|+++|+...+. +.....-+. -+.+-.+.+..++|.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~--~~~~~~~l~------~~lf~~~~LPpIlFe 79 (559)
T TIGR00840 8 PYEFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKAS--PHIDPPTLD------SSYFFLYLLPPIVLD 79 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcC--CCCccCCcC------HHHHHHHHHHHHHHH
Confidence 4333333334444445444443 44 4999999999999999865332 111101111 134455678899999
Q ss_pred HhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccc
Q 041687 114 LSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQL--EENLGNSLKTVAALESTISIHVILALLSDLKLL 191 (764)
Q Consensus 114 ~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~--~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll 191 (764)
.|.++|.+.++++.+..+.+|+.+++++.++.....+++...... ....+..++.+|+++|+|++..+..++++.+ .
T Consensus 80 ~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v 158 (559)
T TIGR00840 80 AGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-V 158 (559)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-C
Confidence 999999999999999999999999999877555444433221111 0114688999999999999999999999999 5
Q ss_pred cChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcch-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCC
Q 041687 192 NSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFK-HAALLMFLSLTFIVVLIVFGLRPTMFWMMRKTPGGK 270 (764)
Q Consensus 192 ~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~ 270 (764)
+.++-.++.+++++||.++++++ .++..+...+.. ..+... ...+..+....+..++++++...+..++.|+....+
T Consensus 159 ~~~L~~ll~gESllNDavaIVLf-~~~~~~~~~~~~-~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~~ 236 (559)
T TIGR00840 159 NEKLYIIIFGESLLNDAVTVVLY-NTFIKFHKTADE-PVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIR 236 (559)
T ss_pred CcchhhheehhhhhhccHHHHHH-HHHHHHHhcCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88999999999999999999998 555554331110 011111 001111111112244445555666667777664322
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCC-----CCChhHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 041687 271 SPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPAT-----PPMGASLVDKIESIIWAVFMPCFLINVGRRVNF 345 (764)
Q Consensus 271 ~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~-----~p~~~~l~~kl~~~~~~~~lPiFF~~~Gl~~dl 345 (764)
..+..+++++.++++.++|.+|.|++++.+++|+++.+. ++..+.-.+.+......+...+.|++.|+.+-.
T Consensus 237 ---~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~ 313 (559)
T TIGR00840 237 ---QIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVT 313 (559)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677888888999999999999999999999999542 221122233344444677888999999997521
Q ss_pred c--ce----e------eeec-------------------cChhHHHHHHHHHhhhhHHHHHHHHhhhhcCCCCh-----h
Q 041687 346 F--SV----G------LKTF-------------------LTVEDAVSLGLLLNCRGLYDVQIFSRAIQQQMITD-----E 389 (764)
Q Consensus 346 ~--~l----i------~ilg-------------------~~~~~a~~lg~~m~~kG~~~l~~~~~~~~~~~i~~-----~ 389 (764)
. .. + .++. ++++|.+.+++ .+.||.+.++++....+.+.-.. .
T Consensus 314 ~~~~~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~ 392 (559)
T TIGR00840 314 ENHEWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTT 392 (559)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHH
Confidence 1 00 0 0000 58899999998 78899999988765432222122 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 041687 390 SFAIMVASSVLKSAIIIPLVRVVY 413 (764)
Q Consensus 390 ~f~~lvl~~ll~t~i~~plv~~l~ 413 (764)
++.++++++++....++|+++++.
T Consensus 393 t~~VVl~TvlvqG~T~~pl~~~L~ 416 (559)
T TIGR00840 393 TLVVVFFTVIFQGGTIKPLVEVLK 416 (559)
T ss_pred HHeeehHHHHHHHhhHHHHHHHhC
Confidence 333444455555555678887765
No 16
>PRK11175 universal stress protein UspE; Provisional
Probab=99.76 E-value=2.4e-17 Score=177.75 Aligned_cols=271 Identities=10% Similarity=0.086 Sum_probs=170.5
Q ss_pred ceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHhc
Q 041687 436 LRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHYQ 515 (764)
Q Consensus 436 ~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 515 (764)
.|||+|++.+++...+++.+..++ ++.+.+++++|.++-.....+-...... .........++..+.++++.+..
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA-~~~~a~l~ll~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~ 78 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLA-QRNGGKITAFLPIYDFSYEMTTLLSPDE----REAMRQGVISQRTAWIREQAKPY 78 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHH-HhcCCCEEEEEeccCchhhhhcccchhH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999985 6777899999987532211110000000 00000000111222233332211
Q ss_pred -CCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEEeecCCCCCCCcc
Q 041687 516 -KGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGILYYRGLFMDPKPI 591 (764)
Q Consensus 516 -~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIlvdrg~~~~~~~~ 591 (764)
..+++++..+.. ..+.+++|++.|+++++||||+|+|+.+ +..+|++.+++++++||||.++.++...
T Consensus 79 ~~~~~~~~~~v~~--~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~~~~------ 150 (305)
T PRK11175 79 LDAGIPIEIKVVW--HNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQDWP------ 150 (305)
T ss_pred hhcCCceEEEEec--CCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEecccccC------
Confidence 235666665432 3688999999999999999999999843 6678999999999999999988653211
Q ss_pred cccCcceeEEEeeccCcch-------HHHHHHHHHHhhCC-CeEEEEEEeeecCCCC--------CCCcchhhhH---HH
Q 041687 592 FSRQLTISVCVLFIGGPDD-------REALAYGARMVENH-SIMLTIIRFIAMNHTT--------NDNLIEESCD---LN 652 (764)
Q Consensus 592 ~~~~~~~~i~~~f~gG~dd-------reAl~~a~rma~~~-~v~ltvlr~~~~~~~~--------~~~~~e~~~d---~~ 652 (764)
..++|+++..|+++. +.|+++|.++|+.. +++++++++.++.... ..++.++... ++
T Consensus 151 ----~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (305)
T PRK11175 151 ----EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLL 226 (305)
T ss_pred ----CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHH
Confidence 146999999998753 67999999999987 9999999997532110 0011111111 22
Q ss_pred HHHHHHhcccCCCcEEEEEeeecCh---hhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcC
Q 041687 653 MINGFRMTCINNSNVEYITRSIKDG---AETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASS 729 (764)
Q Consensus 653 ~~~e~~~~~~~~~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~ 729 (764)
.++++..+.. .. ..+..+..| .++.+++++. +.||+++|.++.. |+.+| -+|-..+-++..
T Consensus 227 ~l~~~~~~~~-~~---~~~~~v~~G~~~~~I~~~a~~~--~~DLIVmG~~~~~------~~~~~----llGS~a~~v~~~ 290 (305)
T PRK11175 227 AMKALRQKFG-ID---EEQTHVEEGLPEEVIPDLAEHL--DAELVILGTVGRT------GLSAA----FLGNTAEHVIDH 290 (305)
T ss_pred HHHHHHHHhC-CC---hhheeeccCCHHHHHHHHHHHh--CCCEEEECCCccC------CCcce----eecchHHHHHhc
Confidence 3444443321 11 111122222 3355566654 8999999998632 12221 378888888866
Q ss_pred CCCCcccEEEEee
Q 041687 730 HCASRASIMVIQQ 742 (764)
Q Consensus 730 d~~~~~svLvvqq 742 (764)
++++||||..
T Consensus 291 ---~~~pVLvv~~ 300 (305)
T PRK11175 291 ---LNCDLLAIKP 300 (305)
T ss_pred ---CCCCEEEEcC
Confidence 7789999974
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.57 E-value=9.9e-13 Score=135.13 Aligned_cols=321 Identities=11% Similarity=0.080 Sum_probs=223.7
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhc
Q 041687 47 ILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKS 126 (764)
Q Consensus 47 ~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~ 126 (764)
+++...-.+=+|+-+...+--.+.|+++||++++..+|... .+.+.....++.+-+..=.|.+++|+.-..+.+.
T Consensus 24 lF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~w-----gn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~ 98 (467)
T KOG4505|consen 24 LFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSW-----GNKDYITYEISRVVLCVQVFAVAMELPRAYMLEH 98 (467)
T ss_pred HHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccc-----cCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHH
Confidence 33433344445666666666678999999999998766422 2334566678888899999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhccc---ccChhHHHHHHHH
Q 041687 127 GRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKL---LNSELGRLAVSSS 203 (764)
Q Consensus 127 ~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkl---l~s~~G~lals~a 203 (764)
++..+.+-.--+++-.++.+...|.+.... ....++.++..++.|++...+.+..+-+. ...++..+..+.+
T Consensus 99 w~Si~vlllpVmi~gwlvs~~fvy~l~p~l-----nf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AES 173 (467)
T KOG4505|consen 99 WRSIFVLLLPVMIIGWLVSFGFVYALIPNL-----NFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAES 173 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhc
Confidence 887765422222222223333333333222 24678899999999997666666665444 4566777888999
Q ss_pred HHHhHHHHHHHHHHHHHhccCCC-CCCCCcch-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCchHHHHHH
Q 041687 204 LISSAVNCFAVTFTGNSSGQAAQ-APPPGRFK-HAALLMFLSLTFIVVLIVFGLRPTMFWMMRKTPGGKSPKRGHLWFVN 281 (764)
Q Consensus 204 ~i~D~~~~ill~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il 281 (764)
-.||.+++.++ .+..-+...+. ..++-.+. ...+......+++..+++++.|..+++-.++.--+ .|+++.+-+
T Consensus 174 GcNDGMaipfl-flai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid---~eSfl~~~v 249 (467)
T KOG4505|consen 174 GCNDGMAIPFL-FLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLID---RESFLIFYV 249 (467)
T ss_pred CCCCCcchhHH-HHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHH
Confidence 99999999887 66654432211 00011111 12334444445566677788888887777665443 488999999
Q ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCChhHH-HHHHHHHHHHHHHHHHHHHhcccccccce-----------e
Q 041687 282 IMLLGCSLLAEITGLHGYFGAVILGINTPATPPMGASL-VDKIESIIWAVFMPCFLINVGRRVNFFSV-----------G 349 (764)
Q Consensus 282 ~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~~~~l-~~kl~~~~~~~~lPiFF~~~Gl~~dl~~l-----------i 349 (764)
++.+.|+.+.+.+|.+-.+-.|.+|.+++-..-+.++. ..++..+...++--.||++.|..++++.+ .
T Consensus 250 vl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrl 329 (467)
T KOG4505|consen 250 VLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRL 329 (467)
T ss_pred HHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHH
Confidence 99999999999999999999999999999876665544 44566777777888999999999997655 0
Q ss_pred ee---------------ec-------cChhHHHHHHHHHhhhhHHHHHHHHhhhh
Q 041687 350 LK---------------TF-------LTVEDAVSLGLLLNCRGLYDVQIFSRAIQ 382 (764)
Q Consensus 350 ~i---------------lg-------~~~~~a~~lg~~m~~kG~~~l~~~~~~~~ 382 (764)
++ +- .+|||++.+|. .+|-|.-++..+..+..
T Consensus 330 vilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar~ 383 (467)
T KOG4505|consen 330 VILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLARK 383 (467)
T ss_pred HHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHHh
Confidence 00 00 67999999999 89999988888777643
No 18
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.51 E-value=1.1e-11 Score=135.70 Aligned_cols=244 Identities=16% Similarity=0.217 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 041687 99 LNVFESLGIIYMVFLLSVRIDIRIIQ---KSGRLA---IVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAAL 172 (764)
Q Consensus 99 l~~la~lGli~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ 172 (764)
...+.+.=+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++-+. +....+ ...--++ +
T Consensus 63 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~----~n~~~~------~~~~GW~-I 131 (423)
T PRK14853 63 GTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVA----VNLAGG------GALRGWA-I 131 (423)
T ss_pred HHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHH----HhCCch------hhhhhhh-h
Confidence 34455555678999999999554432 122222 35577888888765322 211100 1112223 3
Q ss_pred HhhhhHHHHHHHHhhccc-ccChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 041687 173 ESTISIHVILALLSDLKL-LNSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVLI 251 (764)
Q Consensus 173 ls~Ts~~vv~~iL~elkl-l~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (764)
-+.|+.+....+|+.+|- .++.++...++.|++||+.+++++ ++.. ++. .. ..+.......+ .+
T Consensus 132 p~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVI-AlfY----t~~------i~--~~~L~~a~~~~--~~ 196 (423)
T PRK14853 132 PTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVI-AVFY----TSE------LN--LEALLLALVPL--AL 196 (423)
T ss_pred hhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhh-hecc----CCC------CC--HHHHHHHHHHH--HH
Confidence 467888999999999875 488999999999999999999888 5544 211 12 22222222111 11
Q ss_pred HHhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCC-----------CChhHHH
Q 041687 252 VFGLRPTMFWMMRKTPGGKSPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATP-----------PMGASLV 320 (764)
Q Consensus 252 ~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~-----------p~~~~l~ 320 (764)
+ |+.+|. ++++.+.++++. +++.+..+..|+|+.+|+|++|+++|..+ +..++++
T Consensus 197 l--------~~l~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle 262 (423)
T PRK14853 197 F--------WLLVQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLE 262 (423)
T ss_pred H--------HHHHHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHH
Confidence 1 222232 244556666653 36677999999999999999999999521 2357899
Q ss_pred HHHHHHHHHHHHHHH-HHHhcccccc-cce-----------e---eeec-----------------------cChhHHHH
Q 041687 321 DKIESIIWAVFMPCF-LINVGRRVNF-FSV-----------G---LKTF-----------------------LTVEDAVS 361 (764)
Q Consensus 321 ~kl~~~~~~~~lPiF-F~~~Gl~~dl-~~l-----------i---~ilg-----------------------~~~~~a~~ 361 (764)
+++++++..+++|+| |+..|.++|. ..+ + .++| ++|++=..
T Consensus 263 ~~L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~g 342 (423)
T PRK14853 263 HRLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFG 342 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHH
Confidence 999999999999999 9999999975 211 0 0111 78899888
Q ss_pred HHHHHhhhhHHHHHHHHhhhh
Q 041687 362 LGLLLNCRGLYDVQIFSRAIQ 382 (764)
Q Consensus 362 lg~~m~~kG~~~l~~~~~~~~ 382 (764)
+|++-..-=.+++-+.+.+++
T Consensus 343 v~~L~GIGFTmSlFI~~LAf~ 363 (423)
T PRK14853 343 VALLAGIGFTVSLLIGELAFG 363 (423)
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 888666666788888888883
No 19
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.42 E-value=1.1e-12 Score=122.84 Aligned_cols=128 Identities=17% Similarity=0.259 Sum_probs=98.6
Q ss_pred eeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHhcC
Q 041687 437 RILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHYQK 516 (764)
Q Consensus 437 rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 516 (764)
|||||++++++...+++.+..++ +..+.+++++|+++.+....+. ... ......++..+.+.++.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la-~~~~~~v~ll~v~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~-- 67 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALA-RAQNGEIIPLNVIEVPNHSSPS---QLE-------VNVQRARKLLRQAERIAAS-- 67 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHh-hcCCCeEEEEEEEecCCCCCcc---hhH-------HHHHHHHHHHHHHHHHhhh--
Confidence 69999999999999999999996 6678999999999976543220 000 0112345555555555443
Q ss_pred CCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEE
Q 041687 517 GLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 517 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
.++.++..+..+ .++.++||+.|+++++|+||||+|+.+ +..+|+++++|++++||||+|+
T Consensus 68 ~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 68 LGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred cCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEe
Confidence 346677776554 579999999999999999999999843 6678999999999999999986
No 20
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.9e-11 Score=135.97 Aligned_cols=354 Identities=14% Similarity=0.088 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHHHHhccC---CChHHHHHHHHHhhchhccccccccccc-----cccCccchhHHHHHHHHHHHHHHH
Q 041687 41 PITSVTILSAIFWLILRPLG---NHTFVSQMLAGILMGPSFLERVNEKFSN-----KIFTPKTMTVLNVFESLGIIYMVF 112 (764)
Q Consensus 41 qi~lil~~~~l~~~ll~rl~---~P~iv~~ilaGiilGP~~lg~l~~~~~~-----~~fp~~~~~~l~~la~lGli~~lF 112 (764)
-.+++++++.+..+++++-| +|.-+.-++-|+++|-..... .....+ ..|.+ + .+-.+=+--+.|
T Consensus 39 ~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~-~~~~s~~~~~~~~f~~--~----~ff~vLLPpiif 111 (575)
T KOG1965|consen 39 FFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYS-SGGKSSRGKRILVFSP--D----LFFLVLLPPIIF 111 (575)
T ss_pred HHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhc-CCCcccccceeEEecc--c----HHHHHhhchhhh
Confidence 34556667778889998888 999999999999999654221 111111 11211 1 122223455789
Q ss_pred HHhhccChhHHHhccchhHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccc
Q 041687 113 LLSVRIDIRIIQKSGRLAIVIGVGSFVLSM-IATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLL 191 (764)
Q Consensus 113 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~-~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll 191 (764)
..|.+++.+.+.|+.-.....++.|..+.. ++|.++.++..+.. ...-.+..++.+|+++|.|++..+..+++|+| .
T Consensus 112 ~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~-~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-v 189 (575)
T KOG1965|consen 112 NSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLL-IYDLSFKDCLAFGALISATDPVTVLAIFNELG-V 189 (575)
T ss_pred cccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccc-cccccHHHHHHHhhHhcccCchHHHHHHHHhC-C
Confidence 999999999999999999999998877764 45655555433221 11224789999999999999999999999999 4
Q ss_pred cChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcch-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Q 041687 192 NSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFK-----HAALLMFLSLTFIVVLIVFGLRPTMFWMMRKT 266 (764)
Q Consensus 192 ~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~ 266 (764)
...+=.++.+++++||.++++++ ..+........ +... ...+..+....+..+.++++ -..+.|.+
T Consensus 190 d~~Ly~LVFGESvLNDAvsIVlf-~~i~~~~~~~~----~~~~~~~~ig~Fl~~F~gS~~lGv~~Gli----sA~~lK~~ 260 (575)
T KOG1965|consen 190 DPKLYTLVFGESVLNDAVSIVLF-NTIQKFQLGSL----NDWTAFSAIGNFLYTFFGSLGLGVAIGLI----SALVLKFL 260 (575)
T ss_pred CcceeeeeecchhccchhHHHHH-HHHHHHccCCc----hhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 67788899999999999999999 55554432221 1111 01112222222222222222 22233332
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCC-----CChhHHHHHHHHHHHHHHHHHHHHHhcc
Q 041687 267 PGGKSPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATP-----PMGASLVDKIESIIWAVFMPCFLINVGR 341 (764)
Q Consensus 267 ~~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~-----p~~~~l~~kl~~~~~~~~lPiFF~~~Gl 341 (764)
--++ ....+..+.+++....+++||.+|+++++..+..|+.+.+.. +..+.-.+.+-.+..-+---+-|+++|+
T Consensus 261 ~l~~-~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl 339 (575)
T KOG1965|consen 261 YLRR-TPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGL 339 (575)
T ss_pred HhcC-CcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2221 234667888899999999999999999999999999997642 3333334444444455666677999996
Q ss_pred cc-cccce-------------eeeec-----------------------cChhHHHHHHHHHhhhhHHHHHHHHhhh-hc
Q 041687 342 RV-NFFSV-------------GLKTF-----------------------LTVEDAVSLGLLLNCRGLYDVQIFSRAI-QQ 383 (764)
Q Consensus 342 ~~-dl~~l-------------i~ilg-----------------------~~~~~a~~lg~~m~~kG~~~l~~~~~~~-~~ 383 (764)
.+ +.... ++++| ++.++-..+.+.-.-||.+.++++.--. +.
T Consensus 340 ~~f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~ 419 (575)
T KOG1965|consen 340 SAFDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDS 419 (575)
T ss_pred HHhcccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhcccc
Confidence 42 32221 11122 3344455566654579999988764321 11
Q ss_pred -----CCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041687 384 -----QMITDESFAIMVASSVLKSAIIIPLVRVVY 413 (764)
Q Consensus 384 -----~~i~~~~f~~lvl~~ll~t~i~~plv~~l~ 413 (764)
+.+=..+..+.++++++....+.|+++++-
T Consensus 420 ~~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~ 454 (575)
T KOG1965|consen 420 PHTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLM 454 (575)
T ss_pred ccccccEEEEeeeeeeeeeeeeeCCccHHHHHHhc
Confidence 223333444555555565667889998876
No 21
>PRK15005 universal stress protein F; Provisional
Probab=99.18 E-value=1.2e-10 Score=111.09 Aligned_cols=136 Identities=16% Similarity=0.168 Sum_probs=91.2
Q ss_pred ceeEEEeeCCCC--hHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhH
Q 041687 436 LRILACINDPDN--VATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKH 513 (764)
Q Consensus 436 ~rILvcv~~~e~--~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 513 (764)
.|||+|+|++++ ...+++.+..++ ++.+.+++++|+++.............. .........++..+.++++.+
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la-~~~~~~l~ll~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~ 77 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEA-KIDDAEVHFLTVIPSLPYYASLGLAYSA----ELPAMDDLKAEAKSQLEEIIK 77 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHH-hccCCeEEEEEEEccCcccccccccccc----cchHHHHHHHHHHHHHHHHHH
Confidence 479999999998 467888888774 6678899999999753221110000000 000001112333344555544
Q ss_pred hc-CCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC--ChhhHHHHHHhhhcCCcceEEE
Q 041687 514 YQ-KGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD--SPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 514 ~~-~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~--~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
.. ..+++++..+. ..+..+.|++.|+++++||||||.|+.+ +..+||+.++|+++|||||.|+
T Consensus 78 ~~~~~~~~~~~~v~---~G~p~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 78 KFKLPTDRVHVHVE---EGSPKDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred HhCCCCCceEEEEe---CCCHHHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCCCCEEEe
Confidence 32 23344554443 5788999999999999999999999744 5678999999999999999875
No 22
>PRK15456 universal stress protein UspG; Provisional
Probab=99.15 E-value=1.5e-10 Score=110.28 Aligned_cols=134 Identities=9% Similarity=0.052 Sum_probs=90.9
Q ss_pred ceeEEEeeCCC--ChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhH
Q 041687 436 LRILACINDPD--NVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKH 513 (764)
Q Consensus 436 ~rILvcv~~~e--~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 513 (764)
.|||+|+|+++ +...+++.+..++ +.. .+++++|+++-.... .. ..... ..........++..+.++++.+
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la-~~~-~~l~llhv~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~~l~~~~~ 75 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLA-QDD-GVIHLLHVLPGSASL-SL--HRFAA--DVRRFEEHLQHEAEERLQTMVS 75 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHH-hcC-CeEEEEEEecCcccc-cc--ccccc--chhhHHHHHHHHHHHHHHHHHH
Confidence 57999999984 8999999999885 444 589999998743211 00 00000 0000000112233344455543
Q ss_pred hc-CCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC--ChhhHHHHHHhhhcCCcceEEE
Q 041687 514 YQ-KGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD--SPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 514 ~~-~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~--~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
.. ..+++++..+. ..+..++|++.|+++++||||||.|+.+ +..+||+.++|+++|||||.|+
T Consensus 76 ~~~~~~~~v~~~v~---~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 76 HFTIDPSRIKQHVR---FGSVRDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred HhCCCCcceEEEEc---CCChHHHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcCCCCEEEe
Confidence 32 24466666654 4789999999999999999999999944 5678999999999999999875
No 23
>PRK09982 universal stress protein UspD; Provisional
Probab=99.09 E-value=3.9e-10 Score=107.59 Aligned_cols=133 Identities=8% Similarity=0.044 Sum_probs=88.7
Q ss_pred ceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHhc
Q 041687 436 LRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHYQ 515 (764)
Q Consensus 436 ~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 515 (764)
.+||+|++.+++...+++.+..++ ++.+.+++++|+++......+-...... ........++..+.++++.+..
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA-~~~~a~l~llhV~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~ 77 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELA-RHNDAHLTLIHIDDGLSELYPGIYFPAT-----EDILQLLKNKSDNKLYKLTKNI 77 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHH-HHhCCeEEEEEEccCcchhchhhhccch-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 579999999999999999999885 6788999999998743211100000000 0000011122223344444332
Q ss_pred CCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC-ChhhHHHHHHhhhcCCcceEEE
Q 041687 516 KGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD-SPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 516 ~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~-~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
+...++..+. ..+..+.||+.|++.++||||||.|+++ +..++ +.++|+++|+|||.|+
T Consensus 78 -~~~~~~~~v~---~G~p~~~I~~~A~~~~aDLIVmG~~~~~~~~~~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 78 -QWPKTKLRIE---RGEMPETLLEIMQKEQCDLLVCGHHHSFINRLMP-AYRGMINKMSADLLIV 137 (142)
T ss_pred -CCCcceEEEE---ecCHHHHHHHHHHHcCCCEEEEeCChhHHHHHHH-HHHHHHhcCCCCEEEe
Confidence 2223443333 4789999999999999999999987544 55564 9999999999999886
No 24
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.08 E-value=5.6e-10 Score=106.55 Aligned_cols=135 Identities=7% Similarity=0.018 Sum_probs=88.4
Q ss_pred ceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHhc
Q 041687 436 LRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHYQ 515 (764)
Q Consensus 436 ~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 515 (764)
.|||+|+|.+++...+++.+..++ +..+.+++++|+.+-.....+-.. ... .........++....++++.+.
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~l~~~~~~- 76 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMA-RPYNAKVSLIHVDVNYSDLYTGLI--DVN---LGDMQKRISEETHHALTELSTN- 76 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHH-HhhCCEEEEEEEccChhhhhhhhh--hcc---hHHHHHHHHHHHHHHHHHHHHh-
Confidence 579999999999999999998885 566789999998421101000000 000 0000011123333445555443
Q ss_pred CCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCCChhhHHHHHHhhhcCCcceEEEe
Q 041687 516 KGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRADSPQIRTVTKNVIKLAPCSVGILY 580 (764)
Q Consensus 516 ~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~~~~~~~~n~~Vl~~ApCsVgIlv 580 (764)
.++.+..... ...+.++.|++.|++.++||||||.|+.....+||+.++|+++|||||.|+.
T Consensus 77 -~~~~~~~~~~--~~G~p~~~I~~~a~~~~~DLIV~Gs~~~~~~~lgSva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 77 -AGYPITETLS--GSGDLGQVLVDAIKKYDMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVP 138 (144)
T ss_pred -CCCCceEEEE--EecCHHHHHHHHHHHhCCCEEEEeCcccHHHHHHHHHHHHHhhCCCCEEEec
Confidence 2333322111 1478899999999999999999999974423378999999999999999874
No 25
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.02 E-value=1.9e-09 Score=103.03 Aligned_cols=137 Identities=9% Similarity=0.102 Sum_probs=90.1
Q ss_pred eeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHhc-
Q 041687 437 RILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHYQ- 515 (764)
Q Consensus 437 rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~- 515 (764)
+||+|+|.+++...+++.+..++ +....+++++|+++.+............. ........++..+.++++.+..
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a-~~~~~~l~ll~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~ 75 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNL-ATKGQTIVLVHVHPPITSIPSSSGKLEVA----SAYKQEEDKEAKELLLPYRCFCS 75 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhc-cCCCCcEEEEEeccCcccCCCCccchHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999885 66788999999987542211000000000 0000001122223333332221
Q ss_pred CCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhH-HHHHHhhhcCC--cceEEEe
Q 041687 516 KGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIR-TVTKNVIKLAP--CSVGILY 580 (764)
Q Consensus 516 ~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~-~~n~~Vl~~Ap--CsVgIlv 580 (764)
..++.++..... -.+..+.|++.|++.++|+||||.|+.+ +..+| ++.++|+++|| |||.|+.
T Consensus 76 ~~~~~~~~~~~~--g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 76 RKGVQCEDVVLE--DDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred hcCCeEEEEEEe--CCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEe
Confidence 134566655442 2478999999999999999999999944 34566 69999999999 9998864
No 26
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.95 E-value=5.1e-09 Score=97.07 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=88.3
Q ss_pred eeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHhcC
Q 041687 437 RILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHYQK 516 (764)
Q Consensus 437 rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 516 (764)
|||+|+++++....+++.+..++ ++.+.+++++|+.+-.. .+ . ....++.++.+.+..++
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la-~~~~~~l~ll~v~~~~~--~~----~-----------~~~~~~~l~~~~~~~~~-- 60 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLA-DRLKAPWYVVYVETPRL--NR----L-----------SEAERRRLAEALRLAEE-- 60 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHH-HHhCCCEEEEEEecCcc--cc----C-----------CHHHHHHHHHHHHHHHH--
Confidence 69999999999999999999985 56788999999986221 10 0 11123444444444433
Q ss_pred CCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcC-CcceEEE
Q 041687 517 GLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLA-PCSVGIL 579 (764)
Q Consensus 517 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~A-pCsVgIl 579 (764)
.++..+ +.. ..+..+.|++.+++.++|+|+||+|+.+ +..+||+.++|+++| ||||.|.
T Consensus 61 ~~~~~~--~~~--~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 61 LGAEVV--TLP--GDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred cCCEEE--EEe--CCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 233332 222 3678999999999999999999999844 667899999999999 9999874
No 27
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=98.94 E-value=3.7e-08 Score=106.34 Aligned_cols=244 Identities=14% Similarity=0.169 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 041687 99 LNVFESLGIIYMVFLLSVRIDIRIIQ---KSGRLA---IVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAAL 172 (764)
Q Consensus 99 l~~la~lGli~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ 172 (764)
...+.+.=+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++=. .+.. ...+ ..--+++-
T Consensus 53 ~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~----~~n~-~~~~-----~~~GW~IP 122 (373)
T TIGR00773 53 LHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYL----AFNA-NDPI-----TREGWAIP 122 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHh----heec-CCCc-----ccCccccc
Confidence 34445555678999999999877764 233443 3456677788875422 2211 1000 01111222
Q ss_pred HhhhhHHHHHHHHhhccc-ccChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 041687 173 ESTISIHVILALLSDLKL-LNSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVLI 251 (764)
Q Consensus 173 ls~Ts~~vv~~iL~elkl-l~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (764)
..|+.+....+|.=+|- ....+-...++-|++||+.+++++ ++.. ++. .. ..+...+..++.+
T Consensus 123 -~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vI-A~FY----t~~------i~--~~~L~~a~~~~~~-- 186 (373)
T TIGR00773 123 -AATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVII-ALFY----TND------LS--MAALLVAAVAIAV-- 186 (373)
T ss_pred -cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhhe-eeec----CCC------CC--HHHHHHHHHHHHH--
Confidence 23344444444444432 456667888999999999998777 4433 111 22 3333333222111
Q ss_pred HHhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCCh----hHHHHHHHHHH
Q 041687 252 VFGLRPTMFWMMRKTPGGKSPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPPMG----ASLVDKIESII 327 (764)
Q Consensus 252 ~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~~----~~l~~kl~~~~ 327 (764)
.++.+|.. +++...+.++..+ ..+++ ...|+|+.+|++++|+++|+..+.. +++++.+++.+
T Consensus 187 --------l~~~~~~~----v~~~~~y~~lgvl-lW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v 252 (373)
T TIGR00773 187 --------LAVLNRCG----VRRLGPYMLVGVI-LWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWV 252 (373)
T ss_pred --------HHHHHHcC----CchhhHHHHHHHH-HHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHH
Confidence 12233322 3344444443333 33333 7999999999999999999865444 34555555558
Q ss_pred HHHHHHHH-HHHhcccccccce----------e---eeec-----------------------cChhHHHHHHHHHhhhh
Q 041687 328 WAVFMPCF-LINVGRRVNFFSV----------G---LKTF-----------------------LTVEDAVSLGLLLNCRG 370 (764)
Q Consensus 328 ~~~~lPiF-F~~~Gl~~dl~~l----------i---~ilg-----------------------~~~~~a~~lg~~m~~kG 370 (764)
..+++|+| |+..|.++|...+ + .++| ++|++=..+|++-..-=
T Consensus 253 ~~lilPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGF 332 (373)
T TIGR00773 253 AYLILPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGF 332 (373)
T ss_pred HHHHHHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 89999999 9999999975332 0 0111 67888888887555555
Q ss_pred HHHHHHHHhhhh
Q 041687 371 LYDVQIFSRAIQ 382 (764)
Q Consensus 371 ~~~l~~~~~~~~ 382 (764)
.+++-+.+.+++
T Consensus 333 TmSlfI~~LAf~ 344 (373)
T TIGR00773 333 TMSIFIASLAFG 344 (373)
T ss_pred HHHHHHHHHhcC
Confidence 677777777773
No 28
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.89 E-value=3.9e-09 Score=98.45 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=89.0
Q ss_pred ceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHH---HHh
Q 041687 436 LRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALR---RYK 512 (764)
Q Consensus 436 ~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~---~~~ 512 (764)
.|||+|++++++...+++.+..++ +.+..+++++|+++............... ....+......+ ...
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la-~~~~~~i~~l~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 73 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELA-KRSGAEITLLHVIPPPPQYSFSAAEDEES--------EEEAEEEEQARQAEAEEA 73 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHH-HHHTCEEEEEEEEESCHCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHH-HhhCCeEEEEEeecccccccccccccccc--------ccccchhhhhhhHHHHHH
Confidence 589999999999999999999985 66889999999998665432211100000 000001100000 111
Q ss_pred HhcCCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEE
Q 041687 513 HYQKGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 513 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
... +......... ..+..++|++.+++.++|+||||.|+.+ +..+|++.+++++++||||.|+
T Consensus 74 ~~~-~~~~~~~~~~---~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 74 EAE-GGIVIEVVIE---SGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHH-TTSEEEEEEE---ESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred hhh-ccceeEEEEE---eeccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEe
Confidence 111 2222333322 3789999999999999999999999933 5678999999999999999886
No 29
>PRK10116 universal stress protein UspC; Provisional
Probab=98.82 E-value=2e-08 Score=95.44 Aligned_cols=134 Identities=11% Similarity=0.056 Sum_probs=89.2
Q ss_pred ceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHhc
Q 041687 436 LRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHYQ 515 (764)
Q Consensus 436 ~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 515 (764)
.|||++++.+++...+++.+..++ ++.+.+++++|.++.+........... ........++..+.++++.+.
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA-~~~~a~l~ll~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~- 75 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIA-RPVNGKISLITLASDPEMYNQFAAPML------EDLRSVMQEETQSFLDKLIQD- 75 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHH-HHhCCEEEEEEEccCcccchhhhHHHH------HHHHHHHHHHHHHHHHHHHHh-
Confidence 589999999999999999999985 566789999999864321110100000 000011122333445554443
Q ss_pred CCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC--ChhhHHHHHHhhhcCCcceEEEee
Q 041687 516 KGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD--SPQIRTVTKNVIKLAPCSVGILYY 581 (764)
Q Consensus 516 ~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~--~~~~~~~n~~Vl~~ApCsVgIlvd 581 (764)
.+++..... -...+..+.|++.|+++++||||||.|+.+ ... .++.++|+++|||||.|+..
T Consensus 76 -~~~~~~~~~--~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~-~s~a~~v~~~~~~pVLvv~~ 139 (142)
T PRK10116 76 -ADYPIEKTF--IAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRA-SCSAKRVIASSEVDVLLVPL 139 (142)
T ss_pred -cCCCeEEEE--EecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHH-HHHHHHHHhcCCCCEEEEeC
Confidence 233332111 136889999999999999999999999843 333 47899999999999998754
No 30
>PRK11175 universal stress protein UspE; Provisional
Probab=98.70 E-value=4.4e-08 Score=105.66 Aligned_cols=141 Identities=13% Similarity=0.027 Sum_probs=90.8
Q ss_pred cceeEEEeeCCCCh-------HHHHHHHHhcCCCCC-CceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHH
Q 041687 435 ELRILACINDPDNV-------ATILNIIQTSNSPQS-PIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMIN 506 (764)
Q Consensus 435 e~rILvcv~~~e~~-------~~li~l~~~~~~~~s-~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 506 (764)
..+||+|++.++.. ..+++.+..++ +.. ..+++++|+.+.............. .........++..+
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la-~~~~~a~l~ll~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 226 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLA-EQLNHAEVHLVNAYPVTPINIAIELPEFD----PSVYNDAIRGQHLL 226 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHH-hhCcCCceEEEEEecCcchhccccccccc----hhhHHHHHHHHHHH
Confidence 46899999987654 46888888875 445 6889999998754321100000000 00000011123334
Q ss_pred HHHHHhHhcCCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEEeecC
Q 041687 507 ALRRYKHYQKGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGILYYRG 583 (764)
Q Consensus 507 af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIlvdrg 583 (764)
.++++.+.. +++....... ..+..+.|++.|+++++||||||.|+.+ +..+||+.++|++++||||.+++.+|
T Consensus 227 ~l~~~~~~~--~~~~~~~~v~--~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv~~~~ 302 (305)
T PRK11175 227 AMKALRQKF--GIDEEQTHVE--EGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAIKPDG 302 (305)
T ss_pred HHHHHHHHh--CCChhheeec--cCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEEEEcCCC
Confidence 455555442 2322222111 3678899999999999999999999833 67889999999999999999987666
Q ss_pred C
Q 041687 584 L 584 (764)
Q Consensus 584 ~ 584 (764)
+
T Consensus 303 ~ 303 (305)
T PRK11175 303 Y 303 (305)
T ss_pred C
Confidence 4
No 31
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.61 E-value=2.8e-07 Score=84.80 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=89.1
Q ss_pred eeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHhc-
Q 041687 437 RILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHYQ- 515 (764)
Q Consensus 437 rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~- 515 (764)
+||+|+++++....+++.+..++ +..+.+++++|+.+-....... ... ...++..+.++++.+..
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a-~~~~~~i~~l~v~~~~~~~~~~---~~~----------~~~~~~~~~l~~~~~~~~ 66 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLA-RRLGAELVLLHVVDPPPSSAAE---LAE----------LLEEEARALLEALREALA 66 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHH-HhcCCEEEEEEEecCCCCcchh---HHH----------HHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999995 6678999999997644332210 000 01122223334443321
Q ss_pred CCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEE
Q 041687 516 KGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGI 578 (764)
Q Consensus 516 ~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgI 578 (764)
..+++++..... .+..++|++.+++.++|++|+|+++.+ +..++++.+++++++||||.+
T Consensus 67 ~~~~~~~~~~~~---~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 67 EAGVKVETVVLE---GDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred cCCCceEEEEec---CCCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEEe
Confidence 234666555442 344899999999999999999999854 457899999999999999876
No 32
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.41 E-value=3e-06 Score=80.79 Aligned_cols=128 Identities=12% Similarity=0.155 Sum_probs=81.2
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCC-----------cchhhhHHHHHHHHHhcccCCCcE
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDN-----------LIEESCDLNMINGFRMTCINNSNV 667 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~-----------~~e~~~d~~~~~e~~~~~~~~~~v 667 (764)
+|++++.|.+..+.|+++|.++|+.++.+++++|++++....... +..++..++.++++..... ...+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS-RKGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCC
Confidence 489999999999999999999999999999999998653221110 0111223445555543211 1123
Q ss_pred EEEEeeecC---hhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccc-hhhhhhhcCCCCCc--ccEEEEe
Q 041687 668 EYITRSIKD---GAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELG-VVGDILASSHCASR--ASIMVIQ 741 (764)
Q Consensus 668 ~y~e~~V~~---g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG-~iGd~las~d~~~~--~svLvvq 741 (764)
.+....++. .+++++..++. +.||++||+|+.. |+..| -+| -+.+.+... ++ ++|||||
T Consensus 80 ~~~~~~~~g~~~~~~I~~~a~~~--~~dlIV~Gs~g~~------~l~~~----~~gssva~~Vi~~---a~~~c~Vlvv~ 144 (146)
T cd01989 80 QCEDVVLEDDDVAKAIVEYVADH--GITKLVMGASSDN------HFSMK----FKKSDVASSVLKE---APDFCTVYVVS 144 (146)
T ss_pred eEEEEEEeCCcHHHHHHHHHHHc--CCCEEEEeccCCC------ceeec----ccCCchhHHHHhc---CCCCceEEEEe
Confidence 333333332 33455665554 7899999998732 22211 355 577888755 55 8999998
Q ss_pred e
Q 041687 742 Q 742 (764)
Q Consensus 742 q 742 (764)
.
T Consensus 145 ~ 145 (146)
T cd01989 145 K 145 (146)
T ss_pred C
Confidence 5
No 33
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.33 E-value=2.8e-06 Score=78.98 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=80.6
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchh-hhHHHHHHHHHh-------cccCCCcEE
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEE-SCDLNMINGFRM-------TCINNSNVE 668 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~-~~d~~~~~e~~~-------~~~~~~~v~ 668 (764)
.+||++++.|+++.++|+++|.++|+..+.+++++++.++........... ............ .........
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIVI 81 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhcccee
Confidence 369999999999999999999999999999999999997643211100000 000000000000 000112233
Q ss_pred EEEeeecC-hhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEe
Q 041687 669 YITRSIKD-GAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQ 741 (764)
Q Consensus 669 y~e~~V~~-g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvq 741 (764)
+......+ +.++.+.+++. ++||+++|+++.. .|.+ --+|.+.+-++.. +.++||||.
T Consensus 82 ~~~~~~~~~~~~i~~~~~~~--~~dliv~G~~~~~---------~~~~-~~~gs~~~~l~~~---~~~pVlvv~ 140 (140)
T PF00582_consen 82 EVVIESGDVADAIIEFAEEH--NADLIVMGSRGRS---------GLER-LLFGSVAEKLLRH---APCPVLVVP 140 (140)
T ss_dssp EEEEEESSHHHHHHHHHHHT--TCSEEEEESSSTT---------STTT-SSSHHHHHHHHHH---TSSEEEEEE
T ss_pred EEEEEeeccchhhhhccccc--cceeEEEeccCCC---------CccC-CCcCCHHHHHHHc---CCCCEEEeC
Confidence 33333333 34466666654 8999999999722 1222 2388888888876 778999984
No 34
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.31 E-value=7.9e-06 Score=76.09 Aligned_cols=127 Identities=13% Similarity=0.107 Sum_probs=79.5
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCC--CCcchhhhHHHHHHHHHhcccCCCcEEEEEeeecC
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTN--DNLIEESCDLNMINGFRMTCINNSNVEYITRSIKD 676 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~--~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~~V~~ 676 (764)
||+++..|.++.+.++++|.++|+.++.+++++|+.++..... ..+.+++..++.++++.......+ +........+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~ 79 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLG-VPVHTIIRID 79 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcC-CceEEEEEec
Confidence 5889999999999999999999999999999999997532211 011111122333444432211111 1111122122
Q ss_pred h---hhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEe
Q 041687 677 G---AETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQ 741 (764)
Q Consensus 677 g---~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvq 741 (764)
| .++.+.+++. ++||+++|.++... | ...-+|..-+-+... ++++||||+
T Consensus 80 ~~~~~~I~~~a~~~--~~dlIV~G~~~~~~---------~-~~~~lGs~~~~v~~~---~~~pvlvv~ 132 (132)
T cd01988 80 HDIASGILRTAKER--QADLIIMGWHGSTS---------L-RDRLFGGVIDQVLES---APCDVAVVK 132 (132)
T ss_pred CCHHHHHHHHHHhc--CCCEEEEecCCCCC---------c-cceecCchHHHHHhc---CCCCEEEeC
Confidence 2 4456655543 79999999997431 1 233578888888866 778999985
No 35
>PRK09982 universal stress protein UspD; Provisional
Probab=98.30 E-value=5.4e-06 Score=79.03 Aligned_cols=123 Identities=12% Similarity=0.134 Sum_probs=75.0
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCC-------CCCcchh---hhHHHHHHHHHhcccCCCc
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTT-------NDNLIEE---SCDLNMINGFRMTCINNSN 666 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~-------~~~~~e~---~~d~~~~~e~~~~~~~~~~ 666 (764)
.++|+++..|+++.+.|+++|.++|+.+++++++++++++.... ..++.++ +..++.+++...... ...
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 81 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQ-WPK 81 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 47899999999999999999999999999999999998642210 0011111 112233444443321 111
Q ss_pred EEEEEeeecCh---hhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEe
Q 041687 667 VEYITRSIKDG---AETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQ 741 (764)
Q Consensus 667 v~y~e~~V~~g---~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvq 741 (764)
.+..+..| +++++.+++. ++|||+||+|++ |++.| +| +.+-+... ++++||||.
T Consensus 82 ---~~~~v~~G~p~~~I~~~A~~~--~aDLIVmG~~~~-------~~~~~-----~~-va~~V~~~---s~~pVLvv~ 138 (142)
T PRK09982 82 ---TKLRIERGEMPETLLEIMQKE--QCDLLVCGHHHS-------FINRL-----MP-AYRGMINK---MSADLLIVP 138 (142)
T ss_pred ---ceEEEEecCHHHHHHHHHHHc--CCCEEEEeCChh-------HHHHH-----HH-HHHHHHhc---CCCCEEEec
Confidence 22233334 4566665554 899999997532 23233 24 33333333 678999985
No 36
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.30 E-value=8e-05 Score=82.10 Aligned_cols=244 Identities=14% Similarity=0.139 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHh---ccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 041687 98 VLNVFESLGIIYMVFLLSVRIDIRIIQK---SGRLA---IVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAA 171 (764)
Q Consensus 98 ~l~~la~lGli~~lF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~ 171 (764)
....+.+.=+.+|.|.+|+|+.-+.+.. +.||+ ..-++.|+++|.++= ..+... +. ..--+|+
T Consensus 68 l~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY----~~~n~~-~~------~~~GWgI 136 (438)
T PRK14856 68 LHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIY----FFLNAD-TP------SQHGFGI 136 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHH----hheecC-CC------ccCcccc
Confidence 3444555566789999999998776642 33443 345667777777542 222111 10 0111222
Q ss_pred HHhhhhHHHHHHHHhhccc-ccChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 041687 172 LESTISIHVILALLSDLKL-LNSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVL 250 (764)
Q Consensus 172 ~ls~Ts~~vv~~iL~elkl-l~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (764)
- ..|+.+....+|.=+|- ..+.+-...++-|++||+.+++++ ++.. ++. .. ..+..++..++.++
T Consensus 137 P-mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VI-AlFY----t~~------i~--~~~L~~a~~~~~~l 202 (438)
T PRK14856 137 P-MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVI-ALFY----TTN------LK--FAWLLGALGVVLVL 202 (438)
T ss_pred c-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhhe-eeec----CCC------Cc--HHHHHHHHHHHHHH
Confidence 2 33444544555544442 455677888999999999998777 4443 211 23 34444443322211
Q ss_pred HHHhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCC---------------
Q 041687 251 IVFGLRPTMFWMMRKTPGGKSPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPPM--------------- 315 (764)
Q Consensus 251 ~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~--------------- 315 (764)
++.+|.. ++....++++.. +.-+....-|+|+.++..++|+++|-.++.
T Consensus 203 ----------~~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~ 266 (438)
T PRK14856 203 ----------AVLNRLN----VRSLIPYLLLGV--LLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYA 266 (438)
T ss_pred ----------HHHHHcC----CccccHHHHHHH--HHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhh
Confidence 1223321 223334444333 334445578999999999999999975322
Q ss_pred -----------------------------hhHHHHHHHHHHHHHHHHHH-HHHhcccccccce---------ee---eec
Q 041687 316 -----------------------------GASLVDKIESIIWAVFMPCF-LINVGRRVNFFSV---------GL---KTF 353 (764)
Q Consensus 316 -----------------------------~~~l~~kl~~~~~~~~lPiF-F~~~Gl~~dl~~l---------i~---ilg 353 (764)
-+++++.+.+.+..+.+|+| |+..|..++.... ++ ++|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~lGI~~GLvvG 346 (438)
T PRK14856 267 ETSSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLLGVILGLCLG 346 (438)
T ss_pred ccccccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHHHHHHHHHhc
Confidence 13466677777888999999 8889998874321 10 111
Q ss_pred -----------------------cChhHHHHHHHHHhhhhHHHHHHHHhhhh
Q 041687 354 -----------------------LTVEDAVSLGLLLNCRGLYDVQIFSRAIQ 382 (764)
Q Consensus 354 -----------------------~~~~~a~~lg~~m~~kG~~~l~~~~~~~~ 382 (764)
++|++=.-+|++-..-=.+++-+.+.+++
T Consensus 347 K~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 347 KPLGIFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred chHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 78888888888655555677778888873
No 37
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.23 E-value=6.2e-06 Score=76.31 Aligned_cols=120 Identities=11% Similarity=0.125 Sum_probs=75.8
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEEeeecC--
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYITRSIKD-- 676 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~~V~~-- 676 (764)
||++++.|++..++|+++|.++|++.+++++++++.+++.....+ ..++.+++++......+ +.+. .+.+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~-----~~~~~l~~~~~~~~~~~-~~~~--~~~~~~ 72 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSE-----AERRRLAEALRLAEELG-AEVV--TLPGDD 72 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCH-----HHHHHHHHHHHHHHHcC-CEEE--EEeCCc
Confidence 589999999999999999999999999999999999764321111 11233333332211111 1221 1122
Q ss_pred -hhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEE
Q 041687 677 -GAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVI 740 (764)
Q Consensus 677 -g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvv 740 (764)
.+++.+++++. +.|++++|.++.. .+.. --+|-..+-+...- .++.|||+
T Consensus 73 ~~~~I~~~~~~~--~~dllviG~~~~~--~~~~--------~~~Gs~~~~v~~~a--~~~~v~v~ 123 (124)
T cd01987 73 VAEAIVEFAREH--NVTQIVVGKSRRS--RWRE--------LFRGSLVDRLLRRA--GNIDVHIV 123 (124)
T ss_pred HHHHHHHHHHHc--CCCEEEeCCCCCc--hHHH--------HhcccHHHHHHHhC--CCCeEEEe
Confidence 23466666654 7999999999732 1111 14777777777542 37788886
No 38
>PRK15005 universal stress protein F; Provisional
Probab=98.19 E-value=2.2e-05 Score=74.57 Aligned_cols=127 Identities=7% Similarity=0.077 Sum_probs=77.7
Q ss_pred ceeEEEeeccCcc--hHHHHHHHHHHhhCCCeEEEEEEeeecCCCC------CCCc---c--hhhhHHHHHHHHHhcccC
Q 041687 597 TISVCVLFIGGPD--DREALAYGARMVENHSIMLTIIRFIAMNHTT------NDNL---I--EESCDLNMINGFRMTCIN 663 (764)
Q Consensus 597 ~~~i~~~f~gG~d--dreAl~~a~rma~~~~v~ltvlr~~~~~~~~------~~~~---~--e~~~d~~~~~e~~~~~~~ 663 (764)
.++|++++.|.++ .+.|+++|.++|+..++++++++++++.... ...+ . .++.-++.++++..+..
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 80 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFK- 80 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhC-
Confidence 3689999999998 4799999999999999999999998642110 0000 0 11112233444443321
Q ss_pred CCcEEEEEeeecChh---hHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEE
Q 041687 664 NSNVEYITRSIKDGA---ETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVI 740 (764)
Q Consensus 664 ~~~v~y~e~~V~~g~---~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvv 740 (764)
...+.+ +..+..|. ++.+.+++ .++|||++|++++ |+.+| -+|-..+-+... ++++||||
T Consensus 81 ~~~~~~-~~~v~~G~p~~~I~~~a~~--~~~DLIV~Gs~~~-------~~~~~----llGS~a~~vl~~---a~cpVlvV 143 (144)
T PRK15005 81 LPTDRV-HVHVEEGSPKDRILELAKK--IPADMIIIASHRP-------DITTY----LLGSNAAAVVRH---AECSVLVV 143 (144)
T ss_pred CCCCce-EEEEeCCCHHHHHHHHHHH--cCCCEEEEeCCCC-------Cchhe----eecchHHHHHHh---CCCCEEEe
Confidence 111222 23333442 23333433 3899999998742 22222 378888888866 78899998
Q ss_pred e
Q 041687 741 Q 741 (764)
Q Consensus 741 q 741 (764)
+
T Consensus 144 r 144 (144)
T PRK15005 144 R 144 (144)
T ss_pred C
Confidence 4
No 39
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.18 E-value=1.3e-05 Score=76.34 Aligned_cols=124 Identities=9% Similarity=0.126 Sum_probs=76.3
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCC--C---C--Ccchhhh---HHHHHHHHHhcccCCCc
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTT--N---D--NLIEESC---DLNMINGFRMTCINNSN 666 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~--~---~--~~~e~~~---d~~~~~e~~~~~~~~~~ 666 (764)
.+||+++..|.++.+.|+++|..+|+.++++++++++..+.... . . ++.+++. -++.++++.... +
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~--- 78 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA-G--- 78 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC-C---
Confidence 47999999999999999999999999999999999995321110 0 0 0111111 112233333221 1
Q ss_pred EEEEEeeecCh---hhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEee
Q 041687 667 VEYITRSIKDG---AETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQQ 742 (764)
Q Consensus 667 v~y~e~~V~~g---~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvqq 742 (764)
+...+..+..| +++++.+++. ++||||+|+|++ ++ ..+|-..+-+... ++++||||+.
T Consensus 79 ~~~~~~~~~~G~p~~~I~~~a~~~--~~DLIV~Gs~~~-------~~------~~lgSva~~v~~~---a~~pVLvv~~ 139 (144)
T PRK15118 79 YPITETLSGSGDLGQVLVDAIKKY--DMDLVVCGHHQD-------FW------SKLMSSARQLINT---VHVDMLIVPL 139 (144)
T ss_pred CCceEEEEEecCHHHHHHHHHHHh--CCCEEEEeCccc-------HH------HHHHHHHHHHHhh---CCCCEEEecC
Confidence 11122333333 4466666654 899999999952 11 1155555656544 7789999985
No 40
>PRK15456 universal stress protein UspG; Provisional
Probab=98.13 E-value=2.4e-05 Score=74.43 Aligned_cols=126 Identities=9% Similarity=0.115 Sum_probs=78.0
Q ss_pred ceeEEEeeccCc--chHHHHHHHHHHhhCCCeEEEEEEeeecCCCCC-----C--Ccch---hhhHHHHHHHHHhcccCC
Q 041687 597 TISVCVLFIGGP--DDREALAYGARMVENHSIMLTIIRFIAMNHTTN-----D--NLIE---ESCDLNMINGFRMTCINN 664 (764)
Q Consensus 597 ~~~i~~~f~gG~--ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~-----~--~~~e---~~~d~~~~~e~~~~~~~~ 664 (764)
.+||+++..|++ ..+.|+++|.++|+.. .+++++++.++..... . ++.+ ++.-++.++++..+.. .
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 79 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFT-I 79 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhC-C
Confidence 468999999984 7999999999999875 5899999986532100 0 1111 1122234444443211 1
Q ss_pred CcEEEEEeeecCh---hhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEe
Q 041687 665 SNVEYITRSIKDG---AETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQ 741 (764)
Q Consensus 665 ~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvq 741 (764)
....+ +..+..| +++.+..++ .+.||++||+|+. + +. + .-+|-..+-++.. ++++||||+
T Consensus 80 ~~~~v-~~~v~~G~~~~~I~~~a~~--~~~DLIVmG~~g~--~-~~----~----~llGS~a~~v~~~---a~~pVLvV~ 142 (142)
T PRK15456 80 DPSRI-KQHVRFGSVRDEVNELAEE--LGADVVVIGSRNP--S-IS----T----HLLGSNASSVIRH---ANLPVLVVR 142 (142)
T ss_pred CCcce-EEEEcCCChHHHHHHHHhh--cCCCEEEEcCCCC--C-cc----c----eecCccHHHHHHc---CCCCEEEeC
Confidence 12222 2333444 233343443 3799999999863 2 11 1 2389999999877 789999984
No 41
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.12 E-value=0.00039 Score=75.67 Aligned_cols=242 Identities=14% Similarity=0.110 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHh---ccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 041687 100 NVFESLGIIYMVFLLSVRIDIRIIQK---SGRLA---IVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALE 173 (764)
Q Consensus 100 ~~la~lGli~~lF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~l 173 (764)
+.+.+.=+.+|.|.+|+|+.-+.+.. +.||+ ..-++.|+++|.++=++ +... .. ...--+|+-
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~----~n~g-~~-----~~~~GWgIP- 129 (389)
T PRK09560 61 HWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAA----FNYN-NP-----ETLRGWAIP- 129 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhe----eecC-CC-----cccCccccc-
Confidence 34444455788999999998777642 33443 44566777888754222 2111 00 001112222
Q ss_pred hhhhHHHHHHHHhhccc-ccChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 041687 174 STISIHVILALLSDLKL-LNSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVLIV 252 (764)
Q Consensus 174 s~Ts~~vv~~iL~elkl-l~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (764)
..|+.+....+|+=+|- ....+-...++-|++||+.+++++ ++.. ++. .. ..+...+..++.++
T Consensus 130 mATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VI-A~FY----t~~------i~--~~~L~~a~~~~~~l-- 194 (389)
T PRK09560 130 AATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVII-ALFY----TSD------LS--LPALALAAIAIAVL-- 194 (389)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhhe-eeec----CCC------CC--HHHHHHHHHHHHHH--
Confidence 23444444455544332 455667788899999999998777 4433 211 23 33443333222111
Q ss_pred HhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCC------hhHHHHHHHHH
Q 041687 253 FGLRPTMFWMMRKTPGGKSPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPPM------GASLVDKIESI 326 (764)
Q Consensus 253 ~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~------~~~l~~kl~~~ 326 (764)
++.+|.. ++....+.++.. +.-+....-|+|+.++..++|+++|..++. -+++++++++.
T Consensus 195 --------~~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~ 260 (389)
T PRK09560 195 --------FLLNRLG----VTKLTPYLIVGA--ILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPW 260 (389)
T ss_pred --------HHHHHcC----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhh
Confidence 1223321 233444554443 333444578999999999999999975332 25688889999
Q ss_pred HHHHHHHHH-HHHhcccccccce----------ee---eec-----------------------cChhHHHHHHHHHhhh
Q 041687 327 IWAVFMPCF-LINVGRRVNFFSV----------GL---KTF-----------------------LTVEDAVSLGLLLNCR 369 (764)
Q Consensus 327 ~~~~~lPiF-F~~~Gl~~dl~~l----------i~---ilg-----------------------~~~~~a~~lg~~m~~k 369 (764)
+..+.+|+| |+..|..++-..+ ++ ++| ++|++=..+|++-..-
T Consensus 261 v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIG 340 (389)
T PRK09560 261 VAFAILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIG 340 (389)
T ss_pred hhhhhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 888889999 8888888832111 10 111 7788888888865555
Q ss_pred hHHHHHHHHhhh
Q 041687 370 GLYDVQIFSRAI 381 (764)
Q Consensus 370 G~~~l~~~~~~~ 381 (764)
=.+++-+.+.++
T Consensus 341 FTmSLFIa~LAF 352 (389)
T PRK09560 341 FTMSLFIGSLAF 352 (389)
T ss_pred HHHHHHHHHhhc
Confidence 567787888887
No 42
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.11 E-value=0.00037 Score=76.61 Aligned_cols=243 Identities=14% Similarity=0.087 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHh---ccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 041687 99 LNVFESLGIIYMVFLLSVRIDIRIIQK---SGRLA---IVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAAL 172 (764)
Q Consensus 99 l~~la~lGli~~lF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ 172 (764)
...+.+.=+.+|.|.+|+|+.-+.+.. +.||+ ..-++.|+++|.++=. .+. ..... .--+|+-
T Consensus 64 ~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~----~~n-~~~~~------~~GWgIP 132 (423)
T PRK14855 64 EHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYT----ALN-AGGPG------ASGWGVP 132 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHh----eee-cCCCc------cCccccc
Confidence 344445556788999999998777632 33443 3456677777765422 221 11100 1122222
Q ss_pred HhhhhHHHHHHHHhhccc-ccChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 041687 173 ESTISIHVILALLSDLKL-LNSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVLI 251 (764)
Q Consensus 173 ls~Ts~~vv~~iL~elkl-l~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (764)
..|+.+....+|+=+|- ....+-...++-|++||+.+++++ ++.. ++. .. ..+..++..++.+
T Consensus 133 -mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VI-AlFY----t~~------i~--~~~L~~a~~~~~~-- 196 (423)
T PRK14855 133 -MATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVI-ALFY----TSG------LN--LLALLLAALTWAL-- 196 (423)
T ss_pred -cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheee-Eeec----CCC------CC--HHHHHHHHHHHHH--
Confidence 33455555555544542 345677788999999999998777 4433 211 23 3343333322211
Q ss_pred HHhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCC-C---------------
Q 041687 252 VFGLRPTMFWMMRKTPGGKSPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPP-M--------------- 315 (764)
Q Consensus 252 ~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p-~--------------- 315 (764)
.++.+|.. ++....++++.. +.-+....-|+|+.++..++|+++|..++ .
T Consensus 197 --------l~~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~ 262 (423)
T PRK14855 197 --------ALLAGRLG----VTSLKIYAVLGA--LLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGR 262 (423)
T ss_pred --------HHHHHHcC----CccccHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhccc
Confidence 11223321 233444444433 33444557899999999999999997521 1
Q ss_pred ---------------------hhHHHHHHHHHHHHHHHHHH-HHHhcccccccce------ee---eec-----------
Q 041687 316 ---------------------GASLVDKIESIIWAVFMPCF-LINVGRRVNFFSV------GL---KTF----------- 353 (764)
Q Consensus 316 ---------------------~~~l~~kl~~~~~~~~lPiF-F~~~Gl~~dl~~l------i~---ilg----------- 353 (764)
.+++++++++.+..+.+|+| |+..|..++-... ++ ++|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~~pv~lGI~~GLvvGK~lGI~~~s~l 342 (423)
T PRK14855 263 PEVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGLGTVSLGVFLGLLLGKPLGVVGGAWL 342 (423)
T ss_pred chhhhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCCCcHHHHHHHHHHhcchHHHHHHHHH
Confidence 23577777888888899999 8888888832212 10 111
Q ss_pred ------------cChhHHHHHHHHHhhhhHHHHHHHHhhhh
Q 041687 354 ------------LTVEDAVSLGLLLNCRGLYDVQIFSRAIQ 382 (764)
Q Consensus 354 ------------~~~~~a~~lg~~m~~kG~~~l~~~~~~~~ 382 (764)
++|++=..+|++-..-=.+++-+.+.+++
T Consensus 343 avkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 343 AVRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFA 383 (423)
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 78899888888655555678888888884
No 43
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.10 E-value=3.1e-05 Score=73.69 Aligned_cols=140 Identities=11% Similarity=0.132 Sum_probs=89.7
Q ss_pred cceeEEEee-CCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccC-CCCCCCCCCchhHHHHHHHHh
Q 041687 435 ELRILACIN-DPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSL-EPSSSKPSKIDPMINALRRYK 512 (764)
Q Consensus 435 e~rILvcv~-~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~af~~~~ 512 (764)
-.+|+++++ .++......+.+...+ +.....++++++++-................ ..........++..+..++..
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALA-KRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHH-HhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 368999999 9999999999888885 5566777788887655433221110000000 000001122344455555544
Q ss_pred HhcCCCeE-EEEEEEeccCCCh-HHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEEe
Q 041687 513 HYQKGLKS-VHCFTAVAPFASM-HDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGILY 580 (764)
Q Consensus 513 ~~~~~~v~-v~~~t~vs~~~~m-~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIlv 580 (764)
+.. .+. ++.... ..+. .+.|+..|.+.++|+|+||.++.+ +..+||+.++|++++||||.++.
T Consensus 84 ~~~--~~~~~~~~~~---~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlvv~ 151 (154)
T COG0589 84 EAA--GVPVVETEVV---EGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLVVR 151 (154)
T ss_pred HHc--CCCeeEEEEe---cCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEEEc
Confidence 432 222 233322 2455 699999999999999999998733 45789999999999999998864
No 44
>PRK10116 universal stress protein UspC; Provisional
Probab=98.09 E-value=1.3e-05 Score=76.05 Aligned_cols=124 Identities=12% Similarity=0.158 Sum_probs=74.4
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCC---CCC---Ccchh---hhHHHHHHHHHhcccCCCcE
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHT---TND---NLIEE---SCDLNMINGFRMTCINNSNV 667 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~---~~~---~~~e~---~~d~~~~~e~~~~~~~~~~v 667 (764)
.+||+++..+.++.+.|+++|.++|+..+++++++++..+... ... ++.++ +.-++++++...+. + +
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---~ 78 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA-D---Y 78 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-C---C
Confidence 4799999999999999999999999999999999999743211 000 01111 11223444444331 1 1
Q ss_pred EEEEeeecCh---hhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEe
Q 041687 668 EYITRSIKDG---AETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQ 741 (764)
Q Consensus 668 ~y~e~~V~~g---~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvq 741 (764)
...+..+..| +++.+.+++. ++||+|+|+++.. +++.| +...+-++.. ++++||||.
T Consensus 79 ~~~~~~~~~G~~~~~I~~~a~~~--~~DLiV~g~~~~~------~~~~~------~s~a~~v~~~---~~~pVLvv~ 138 (142)
T PRK10116 79 PIEKTFIAYGELSEHILEVCRKH--HFDLVICGNHNHS------FFSRA------SCSAKRVIAS---SEVDVLLVP 138 (142)
T ss_pred CeEEEEEecCCHHHHHHHHHHHh--CCCEEEEcCCcch------HHHHH------HHHHHHHHhc---CCCCEEEEe
Confidence 1122333344 2344444443 8999999999732 12222 2234444444 778999995
No 45
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.04 E-value=0.00055 Score=74.39 Aligned_cols=244 Identities=14% Similarity=0.160 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHh---ccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 041687 99 LNVFESLGIIYMVFLLSVRIDIRIIQK---SGRLA---IVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAAL 172 (764)
Q Consensus 99 l~~la~lGli~~lF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ 172 (764)
.+.+.+.=+.+|.|.+|+|+.-+.+.. +.||+ ..-++.|+++|.++=. .+... ... ..--+++-
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~----~~n~~-~~~-----~~~GWaIP 129 (388)
T PRK09561 60 LLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYL----LFNYA-DPV-----TREGWAIP 129 (388)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHh----heecC-CCc-----ccCccccc
Confidence 334444455788999999998777642 33443 3456677788875422 22111 000 00111221
Q ss_pred HhhhhHHHHHHHHhhccc-ccChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 041687 173 ESTISIHVILALLSDLKL-LNSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVLI 251 (764)
Q Consensus 173 ls~Ts~~vv~~iL~elkl-l~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (764)
..|+.+....++.=+|- ....+-...++-|++||+.+++++ ++.. ++. .. +.+...+..++.+
T Consensus 130 -~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VI-AlFY----t~~------i~--~~~L~~a~~~~~~-- 193 (388)
T PRK09561 130 -AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVII-ALFY----TSD------LS--MVSLGVAAVAIAV-- 193 (388)
T ss_pred -cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhhe-eeec----CCC------cc--HHHHHHHHHHHHH--
Confidence 23444444444444432 455667888899999999998777 4433 211 22 3333333222111
Q ss_pred HHhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCC----hhHHHHHHHHHH
Q 041687 252 VFGLRPTMFWMMRKTPGGKSPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPPM----GASLVDKIESII 327 (764)
Q Consensus 252 ~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~----~~~l~~kl~~~~ 327 (764)
+ ++.+|.. ++....++++..+ .-+....-|+|+.++..++|+++|...+. -+++++++++.+
T Consensus 194 l--------~~ln~~~----v~~~~~Y~~~G~~--lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v 259 (388)
T PRK09561 194 L--------AVLNLCG----VRRTSVYILVGVV--LWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWV 259 (388)
T ss_pred H--------HHHHHcC----CccchHHHHHHHH--HHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhh
Confidence 1 1223321 2334445554433 34445578999999999999999975322 357888899998
Q ss_pred HHHHHHHH-HHHhcccc-cc--cce-------ee---eec-----------------------cChhHHHHHHHHHhhhh
Q 041687 328 WAVFMPCF-LINVGRRV-NF--FSV-------GL---KTF-----------------------LTVEDAVSLGLLLNCRG 370 (764)
Q Consensus 328 ~~~~lPiF-F~~~Gl~~-dl--~~l-------i~---ilg-----------------------~~~~~a~~lg~~m~~kG 370 (764)
..+.+|+| |+..|..+ +. ..+ ++ ++| ++|++=..+|++-..-=
T Consensus 260 ~~~IlPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGF 339 (388)
T PRK09561 260 AFLILPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGF 339 (388)
T ss_pred hheeHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 88899999 88888887 32 111 10 111 77888888888655555
Q ss_pred HHHHHHHHhhhh
Q 041687 371 LYDVQIFSRAIQ 382 (764)
Q Consensus 371 ~~~l~~~~~~~~ 382 (764)
.+++-+.+.+++
T Consensus 340 TmSLFIa~LAF~ 351 (388)
T PRK09561 340 TMSIFIASLAFG 351 (388)
T ss_pred HHHHHHHHHhcC
Confidence 677778888774
No 46
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.98 E-value=0.0013 Score=71.27 Aligned_cols=244 Identities=13% Similarity=0.118 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 041687 99 LNVFESLGIIYMVFLLSVRIDIRIIQ---KSGRLA---IVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAAL 172 (764)
Q Consensus 99 l~~la~lGli~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ 172 (764)
.+.+.+.=+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++=.. +..... ..--+++-
T Consensus 57 ~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~----~n~~~~-------~~~GW~IP 125 (383)
T PRK14854 57 MHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLS----INHDIK-------VINGWAIP 125 (383)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHh----hccCCc-------ccCccccc
Confidence 33444445578899999999777653 233443 44566778888764222 211110 01111222
Q ss_pred HhhhhHHHHHHHHhhccc-ccChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 041687 173 ESTISIHVILALLSDLKL-LNSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVLI 251 (764)
Q Consensus 173 ls~Ts~~vv~~iL~elkl-l~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (764)
..|+.+....++.=+|- ....+--..++-|++||+.+++++ ++.. ++. .. ..+......++. +
T Consensus 126 -~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VI-AlFY----t~~------i~--~~~L~~A~~~~~--~ 189 (383)
T PRK14854 126 -SATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAII-AIFY----TKS------LS--LLSLSLGTLFIL--A 189 (383)
T ss_pred -cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhhe-eeec----CCC------cc--HHHHHHHHHHHH--H
Confidence 22344444444444432 455666777888999999998777 4432 211 22 323322222111 1
Q ss_pred HHhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCC----hhHHHHHHHHHH
Q 041687 252 VFGLRPTMFWMMRKTPGGKSPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPPM----GASLVDKIESII 327 (764)
Q Consensus 252 ~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~----~~~l~~kl~~~~ 327 (764)
+++ +.|+.. ++....++++.. +.-+....-|+|+.++..++|+++|...+. .+++++++++.+
T Consensus 190 l~~-------~nr~~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v 256 (383)
T PRK14854 190 MII-------CNRIFK----INRSSVYVVLGF--FAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWI 256 (383)
T ss_pred HHH-------HHHhcC----CceehHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchH
Confidence 111 122111 223334444333 334445678999999999999999974321 356888888999
Q ss_pred HHHHHHHH-HHHhccccc-cc--ce-------ee---eec-----------------------cChhHHHHHHHHHhhhh
Q 041687 328 WAVFMPCF-LINVGRRVN-FF--SV-------GL---KTF-----------------------LTVEDAVSLGLLLNCRG 370 (764)
Q Consensus 328 ~~~~lPiF-F~~~Gl~~d-l~--~l-------i~---ilg-----------------------~~~~~a~~lg~~m~~kG 370 (764)
..+.+|+| |+..|..++ .. .+ ++ ++| ++|++=..+|++-..-=
T Consensus 257 ~~~IlPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGF 336 (383)
T PRK14854 257 IYFILPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGF 336 (383)
T ss_pred HHhhHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999 888888883 21 11 10 111 77899888888655555
Q ss_pred HHHHHHHHhhhh
Q 041687 371 LYDVQIFSRAIQ 382 (764)
Q Consensus 371 ~~~l~~~~~~~~ 382 (764)
.+++-+.+.+++
T Consensus 337 TmSLFIa~LAF~ 348 (383)
T PRK14854 337 TMSLFIGVLAFN 348 (383)
T ss_pred HHHHHHHHhhCC
Confidence 678888888884
No 47
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=97.92 E-value=0.00023 Score=77.24 Aligned_cols=246 Identities=15% Similarity=0.180 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 041687 98 VLNVFESLGIIYMVFLLSVRIDIRIIQ---KSGRLA---IVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAA 171 (764)
Q Consensus 98 ~l~~la~lGli~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~ 171 (764)
..+.+.+.=+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|..+ +..+ ..... ...--+++
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI----yl~~-n~~~~-----~~~~GW~I 124 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI----YLAF-NAGGP-----EAAHGWAI 124 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH----HGGG---SST-----THHHHTSS
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH----Hhee-ecCCC-----CcCceEEe
Confidence 344455555678999999999877653 233443 34456667777653 1111 11111 01111222
Q ss_pred HHhhhhHHHHHHHHhhccc-ccChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 041687 172 LESTISIHVILALLSDLKL-LNSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVL 250 (764)
Q Consensus 172 ~ls~Ts~~vv~~iL~elkl-l~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (764)
- ..|+.+....++.=+|- ....+-...++-|++||+.+++++ ++... +. .. ..+......++.
T Consensus 125 P-~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVI-A~FYt----~~------i~--~~~L~~a~~~~~-- 188 (378)
T PF06965_consen 125 P-MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVI-ALFYT----DG------IS--LLWLLLAAAALL-- 188 (378)
T ss_dssp S-S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHH-HHHS-----------------HHHHHHHHHHHH--
T ss_pred c-ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhhe-eeeeC----CC------CC--HHHHHHHHHHHH--
Confidence 2 33555555556554442 345567888999999999999888 55432 11 22 333332322111
Q ss_pred HHHhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCCh--------hHHHHH
Q 041687 251 IVFGLRPTMFWMMRKTPGGKSPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPPMG--------ASLVDK 322 (764)
Q Consensus 251 ~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~~--------~~l~~k 322 (764)
.+ |..+|.. ++....+..+.. ..-+....-|+|+.++..++|+++|..++.+ ++++++
T Consensus 189 ~l--------~~l~r~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~ 254 (378)
T PF06965_consen 189 LL--------FVLNRLG----VRSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHA 254 (378)
T ss_dssp HH--------HHHHHTT-------THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHH
T ss_pred HH--------HHHHHCC----CceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHH
Confidence 11 2233322 223344443332 3344455789999999999999999876542 378888
Q ss_pred HHHHHHHHHHHHH-HHHhcccccccce----------ee---eec-----------------------cChhHHHHHHHH
Q 041687 323 IESIIWAVFMPCF-LINVGRRVNFFSV----------GL---KTF-----------------------LTVEDAVSLGLL 365 (764)
Q Consensus 323 l~~~~~~~~lPiF-F~~~Gl~~dl~~l----------i~---ilg-----------------------~~~~~a~~lg~~ 365 (764)
+++.+..+.+|+| |+..|..++-..+ ++ ++| ++|++=..+|++
T Consensus 255 L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~L 334 (378)
T PF06965_consen 255 LHPWVAFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLL 334 (378)
T ss_dssp HHHHHHHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHH
T ss_pred hhhhhhhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence 8899888999999 8899998875432 10 011 677877777775
Q ss_pred HhhhhHHHHHHHHhhhhc
Q 041687 366 LNCRGLYDVQIFSRAIQQ 383 (764)
Q Consensus 366 m~~kG~~~l~~~~~~~~~ 383 (764)
-..-=.+++-+.+.+++.
T Consensus 335 aGIGFTmSLFIa~LAF~~ 352 (378)
T PF06965_consen 335 AGIGFTMSLFIAGLAFDD 352 (378)
T ss_dssp TT--HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 555556778888888776
No 48
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.82 E-value=0.00026 Score=64.86 Aligned_cols=127 Identities=16% Similarity=0.235 Sum_probs=78.1
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCC--CcchhhhHHHHHHHHHhccc-CCCcEEEEEeeec
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTND--NLIEESCDLNMINGFRMTCI-NNSNVEYITRSIK 675 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~--~~~e~~~d~~~~~e~~~~~~-~~~~v~y~e~~V~ 675 (764)
+|++++.+++..+.++++|.++|+..+.+++++++.++...... ++.+....++.++++..... ..-.+.+.-..-.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGD 80 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 57899999999999999999999999999999999865332110 01122233455555554321 1112322211111
Q ss_pred ChhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEE
Q 041687 676 DGAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVI 740 (764)
Q Consensus 676 ~g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvv 740 (764)
...++.+.+++. ++|++++|.++.. .|.+ --.|.+.+-+... ++++||+|
T Consensus 81 ~~~~i~~~~~~~--~~dlvvig~~~~~---------~~~~-~~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 81 PAEAILEAAEEL--GADLIVMGSRGRS---------GLRR-LLLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred CHHHHHHHHHHc--CCCEEEEcCCCCC---------ccce-eeeccHHHHHHhC---CCCCEEeC
Confidence 234566666654 7999999998632 1211 2467777777754 56677764
No 49
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=97.80 E-value=5e-05 Score=85.23 Aligned_cols=286 Identities=12% Similarity=0.072 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHhccC--CChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccCh
Q 041687 43 TSVTILSAIFWLILRPLG--NHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDI 120 (764)
Q Consensus 43 ~lil~~~~l~~~ll~rl~--~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~ 120 (764)
.++..++++...+..+++ .|.-.-.|+.|+++|-...+. ... .-+..++...+ -.=+--++|-+|.-|.-
T Consensus 48 il~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~-~~~---~~~~L~s~vFF----lyLLPPIvlDAGYfMp~ 119 (670)
T KOG1966|consen 48 ILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKAL-ATI---APFFLESDVFF----LYLLPPIVLDAGYFMPN 119 (670)
T ss_pred HHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhh-hcc---ccccccccchh----hhhcCHHHhcccccCcc
Confidence 333344455555555554 788888999999999665332 100 00111111111 01122367899999999
Q ss_pred hHHHhccchhHHHHHHHHHHHHHHHHHHHHHH--hhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccccChhHHH
Q 041687 121 RIIQKSGRLAIVIGVGSFVLSMIATILASSFV--KGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLNSELGRL 198 (764)
Q Consensus 121 ~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l--~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~G~l 198 (764)
+.+..+-...+..|+.|.+.-.+.-.+..|.+ .+.++.. ......++.|...|.-++..|..+.+|.. .|.-+=-+
T Consensus 120 r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~ 197 (670)
T KOG1966|consen 120 RAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFII 197 (670)
T ss_pred HHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEee
Confidence 99999999999999999887644222222222 2222211 13456788899999999999999999998 46666678
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCchHH
Q 041687 199 AVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKH-AALLMFLSLTFIVVLIVFGLRPTMFWMMRKTPGGKSPKRGHL 277 (764)
Q Consensus 199 als~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~ 277 (764)
+.+.+++||.+.+++. -+......-++.. -..... .....+....+..++++.+...+.....|.+.. ++=..-
T Consensus 198 VFGESLlNDaVTVVLY-~~f~sf~~ig~~n-~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrvieP 272 (670)
T KOG1966|consen 198 VFGESLLNDAVTVVLY-NMFISFVEIGSDN-LTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEP 272 (670)
T ss_pred eehhhhhcCceEEehH-HHHHHHHHhcccc-eeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecc
Confidence 8899999999999887 4443322211100 000000 001111111112222333333334444444433 233345
Q ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCC-----CCChhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 041687 278 WFVNIMLLGCSLLAEITGLHGYFGAVILGINTPAT-----PPMGASLVDKIESIIWAVFMPCFLINVGRRV 343 (764)
Q Consensus 278 ~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~-----~p~~~~l~~kl~~~~~~~~lPiFF~~~Gl~~ 343 (764)
++++.+...++..+|.++++++++-.+.|+++..- ......-++.+-......--++-|++.|..+
T Consensus 273 vfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~ 343 (670)
T KOG1966|consen 273 VFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVST 343 (670)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhh
Confidence 78888999999999999999999999999999653 1111222233333344555666777777765
No 50
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.55 E-value=0.00067 Score=74.30 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=75.4
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCC--CeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhccc-----CCCcEEE
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENH--SIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCI-----NNSNVEY 669 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~--~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~-----~~~~v~y 669 (764)
.+||++++.|.+..+.|+++|..+|+.+ ++++++++++++.......+...+..++.+++.+.... ....+.+
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~v 84 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVTI 84 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCce
Confidence 6799999999999999999999999985 69999999986532211111111122233333332110 0123444
Q ss_pred EEeeec---------C-hhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCC
Q 041687 670 ITRSIK---------D-GAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHC 731 (764)
Q Consensus 670 ~e~~V~---------~-g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~ 731 (764)
....+. + .++|++..++. ++|||+||+.-..... -|-|-+++--|+..+.
T Consensus 85 e~~vv~~~~~~~~~G~pae~Iv~~Aee~--~aDLIVm~~~~~~~~~----------~~~~~~~~~~~~~~~~ 144 (357)
T PRK12652 85 ETALLGTDEYLFGPGDYAEVLIAYAEEH--GIDRVVLDPEYNPGGT----------APMLQPLERELARAGI 144 (357)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHc--CCCEEEECCCCCCCCC----------CcccchHHHHHHhcCC
Confidence 433332 2 44566666654 8999999997533211 3456666677776654
No 51
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.021 Score=60.01 Aligned_cols=237 Identities=13% Similarity=0.131 Sum_probs=132.0
Q ss_pred HHHHHHHHhhccChhHHHh---ccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHH
Q 041687 107 IIYMVFLLSVRIDIRIIQK---SGRLA---IVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHV 180 (764)
Q Consensus 107 li~~lF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~v 180 (764)
..++.+.+|+|+.-+.+.. +++++ ..-++.|++.|.++ +..+....+... --++ +-+.|+.+.
T Consensus 71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~n~~~p~~~------~GWa-IP~ATDiAF 139 (390)
T COG3004 71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLALNAGDPATL------EGWA-IPMATDIAF 139 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hheeecCChhhh------cCcC-cccHHHHHH
Confidence 3567788999998877643 33333 33455566666543 222221111000 0111 224455555
Q ss_pred HHHHHhhcc-cccChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhHHHH
Q 041687 181 ILALLSDLK-LLNSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVLIVFGLRPTM 259 (764)
Q Consensus 181 v~~iL~elk-ll~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~ 259 (764)
...+++=++ ...+.+--..++-|++||+-++++. ++... .+ .+ ..+...+.++.. ... .+
T Consensus 140 AlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvII-AlFYt---~~-------Ls--~~al~~a~~~i~--vL~----~l 200 (390)
T COG3004 140 ALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVII-ALFYT---TD-------LS--MAALGIAALAIA--VLA----VL 200 (390)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhh-hhhhc---CC-------cc--HHHHHHHHHHHH--HHH----HH
Confidence 555655553 3567777888999999999998887 55432 11 22 222222222111 111 12
Q ss_pred HHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCC----hhHHHHHHHHHHHHHHHHHH
Q 041687 260 FWMMRKTPGGKSPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPPM----GASLVDKIESIIWAVFMPCF 335 (764)
Q Consensus 260 ~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~----~~~l~~kl~~~~~~~~lPiF 335 (764)
+| . . ++....+++...++-.+ -..-|.|..++..+.|+++|-.... -+++++.+.+.+.-+.+|+|
T Consensus 201 N~---~-~----v~~l~~Y~~~gviLW~~--vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlF 270 (390)
T COG3004 201 NR---L-G----VRRLSPYLLVGVILWIA--VLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLF 270 (390)
T ss_pred HH---h-C----chhhhHHHHHHHHHHHH--HHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHH
Confidence 22 1 1 11222344444433222 3457999999999999999965433 35667777777888899999
Q ss_pred -HHHhccccc---ccce-------ee---eec-----------------------cChhHHHHHHHHHhhhhHHHHHHHH
Q 041687 336 -LINVGRRVN---FFSV-------GL---KTF-----------------------LTVEDAVSLGLLLNCRGLYDVQIFS 378 (764)
Q Consensus 336 -F~~~Gl~~d---l~~l-------i~---ilg-----------------------~~~~~a~~lg~~m~~kG~~~l~~~~ 378 (764)
|...|..++ ...+ ++ ++| .+|++-..++++-..-=.+++-+..
T Consensus 271 aFaNAGvsl~g~~~~~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~ 350 (390)
T COG3004 271 AFANAGVSLQGVSLSGLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIAS 350 (390)
T ss_pred HHccCCcccccccccccccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHH
Confidence 888888876 2222 00 111 6677777777754444456666666
Q ss_pred hhhhc
Q 041687 379 RAIQQ 383 (764)
Q Consensus 379 ~~~~~ 383 (764)
.+++.
T Consensus 351 LAf~~ 355 (390)
T COG3004 351 LAFGS 355 (390)
T ss_pred HhcCC
Confidence 66543
No 52
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.34 E-value=0.001 Score=72.87 Aligned_cols=128 Identities=9% Similarity=0.060 Sum_probs=81.9
Q ss_pred cceeEEEeeCCCChHHHHHHHHhcCCCC--CCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHh
Q 041687 435 ELRILACINDPDNVATILNIIQTSNSPQ--SPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYK 512 (764)
Q Consensus 435 e~rILvcv~~~e~~~~li~l~~~~~~~~--s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 512 (764)
-.|||+|+|.++++..+++-+..++ ++ .+.+++++|+++....... .+ ......+++.+..++..
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA-~~~g~~AeL~lL~Vv~~~~~~~~----~~--------~~~~~~eelle~~~~~~ 71 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESA-EEAAETPTVHLVAAASGRAVDPE----GQ--------DELAAAEELLERVEVWA 71 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHH-HhcCCCCEEEEEEEecCcccccc----hh--------HHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999986 44 3689999999884211000 00 01112234444444443
Q ss_pred Hh----cCCCeEEEEEEEec-----cCCChHHHHHHHHHhcCccEEEecccc---CCChhhHHHHHHhhhcCCcce
Q 041687 513 HY----QKGLKSVHCFTAVA-----PFASMHDDICLMAFEKCTALVILPFKR---ADSPQIRTVTKNVIKLAPCSV 576 (764)
Q Consensus 513 ~~----~~~~v~v~~~t~vs-----~~~~m~~dI~~~A~e~~adlIIlp~h~---s~~~~~~~~n~~Vl~~ApCsV 576 (764)
+. ...+++++..+... ...+.++.|++.|++.++|+|||+-.- ....+++.+-. =|.++-|++
T Consensus 72 ~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 146 (357)
T PRK12652 72 TEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQPLER-ELARAGITY 146 (357)
T ss_pred HHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCcccchHHH-HHHhcCCce
Confidence 22 11467777666532 126899999999999999999999654 22344454433 345555553
No 53
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=96.57 E-value=0.069 Score=56.57 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=63.8
Q ss_pred HHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhHHHHHHHHHHhhhhHHHHHHHH
Q 041687 107 IIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQ-LEENLGNSLKTVAALESTISIHVILALL 185 (764)
Q Consensus 107 li~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~-~~~~~~~~~l~l~~~ls~Ts~~vv~~iL 185 (764)
+..++|-.|-++|++...+.-||...+-+.-+++..++|.+++.++....- .+.......+.+-++++.+....=..+.
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~ 130 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALM 130 (314)
T ss_pred HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHH
Confidence 456889999999999999999998888888888888888887777754310 0000235566677777777777777777
Q ss_pred hhcccccChhH
Q 041687 186 SDLKLLNSELG 196 (764)
Q Consensus 186 ~elkll~s~~G 196 (764)
.|.|- ++|.|
T Consensus 131 ~~yGd-~~D~g 140 (314)
T PF03812_consen 131 GQYGD-EEDVG 140 (314)
T ss_pred HHhCC-HHHhH
Confidence 77773 45554
No 54
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=96.48 E-value=0.055 Score=51.07 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=81.8
Q ss_pred ceeEEEeec-cCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCC-------------cchhhhHHHHHHHHHhccc
Q 041687 597 TISVCVLFI-GGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDN-------------LIEESCDLNMINGFRMTCI 662 (764)
Q Consensus 597 ~~~i~~~f~-gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~-------------~~e~~~d~~~~~e~~~~~~ 662 (764)
.+++++.+. |.+..++|++.+...++..+..++++++..+....... ...+...++.+++.+....
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468999999 99999999999999999999999988887543211100 0112233555555554322
Q ss_pred CCCcEEEEEeeecCh----hhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEE
Q 041687 663 NNSNVEYITRSIKDG----AETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIM 738 (764)
Q Consensus 663 ~~~~v~y~e~~V~~g----~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svL 738 (764)
...... .+..+..| +++....++. ++||+++|.++. +.|.+ --||-.-+-++.. ++++||
T Consensus 85 ~~~~~~-~~~~~~~g~~~~~~i~~~a~~~--~adliV~G~~g~---------~~l~~-~llGsvs~~v~~~---~~~pVl 148 (154)
T COG0589 85 AAGVPV-VETEVVEGSPSAEEILELAEEE--DADLIVVGSRGR---------SGLSR-LLLGSVAEKVLRH---APCPVL 148 (154)
T ss_pred HcCCCe-eEEEEecCCCcHHHHHHHHHHh--CCCEEEECCCCC---------ccccc-eeeehhHHHHHhc---CCCCEE
Confidence 211111 12222222 3333344443 799999999742 12222 3588888888876 788999
Q ss_pred EEeec
Q 041687 739 VIQQQ 743 (764)
Q Consensus 739 vvqq~ 743 (764)
|++..
T Consensus 149 vv~~~ 153 (154)
T COG0589 149 VVRSE 153 (154)
T ss_pred EEccC
Confidence 99853
No 55
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.44 E-value=1.2 Score=48.02 Aligned_cols=84 Identities=21% Similarity=0.341 Sum_probs=58.7
Q ss_pred ccCCChHHHHHHHHHhhchhccccccccccccccCccchh-HHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHH
Q 041687 58 PLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMT-VLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVG 136 (764)
Q Consensus 58 rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~-~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~ 136 (764)
..+++..+--++.|+++|+..++. .+.+. +... .-+.+-++|++ +.|.++++..+.+.+.+.+.+...
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~-~~~~~------~Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~ 91 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGL-PARFK------PGIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIII 91 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCC-cHHHH------hHHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHH
Confidence 467888888899999999733443 22211 1222 23477778877 579999999999999998888777
Q ss_pred HHHHHHHHHHHHH-HHH
Q 041687 137 SFVLSMIATILAS-SFV 152 (764)
Q Consensus 137 ~~~~p~~~g~~~~-~~l 152 (764)
.+...+.++..++ ..+
T Consensus 92 ~v~~~~~~~~~lg~r~~ 108 (305)
T PF03601_consen 92 VVILTFLLTYWLGRRLF 108 (305)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 7777776666555 444
No 56
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=96.39 E-value=0.12 Score=55.02 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=62.1
Q ss_pred HHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHh
Q 041687 107 IIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLS 186 (764)
Q Consensus 107 li~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~ 186 (764)
+..++|-.|-++|++...+.-||...+-+.-++++.+++.+++.++.... ......+.+-.+++.|.-..=..+..
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g----~~Gls~laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEG----IFGLSGLAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccc----ccchHHHHHHHHHhcCcHHHHHHHHH
Confidence 45688999999999998888888877777778888888887777775321 12355666777777777777777888
Q ss_pred hcccccChhH
Q 041687 187 DLKLLNSELG 196 (764)
Q Consensus 187 elkll~s~~G 196 (764)
|.| -++|.|
T Consensus 127 ~yG-~~~d~g 135 (312)
T PRK12460 127 EFG-DERDVG 135 (312)
T ss_pred HcC-CHhhhh
Confidence 888 355555
No 57
>PRK10490 sensor protein KdpD; Provisional
Probab=96.18 E-value=0.028 Score=69.69 Aligned_cols=124 Identities=12% Similarity=0.093 Sum_probs=88.1
Q ss_pred CccceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHh
Q 041687 433 NSELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYK 512 (764)
Q Consensus 433 ~~e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 512 (764)
....|||||++.+.+...+++-+..++ .+.+.+.+++|+..-..+. . .....+++.+.++ ++
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA-~~~~a~~~~l~V~~~~~~~--~--------------~~~~~~~l~~~~~-lA 309 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLA-ARLGSVWHAVYVETPRLHR--L--------------PEKKRRAILSALR-LA 309 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHH-HhcCCCEEEEEEecCCcCc--C--------------CHHHHHHHHHHHH-HH
Confidence 356789999999999999999999996 5677899999985321110 0 0112245555554 55
Q ss_pred HhcCCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCCChh-hHHHHHHhhhcCC-cceEEEe
Q 041687 513 HYQKGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRADSPQ-IRTVTKNVIKLAP-CSVGILY 580 (764)
Q Consensus 513 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~~~~-~~~~n~~Vl~~Ap-CsVgIlv 580 (764)
++.+ .++.... .+++.+.|.+.|++++++.||||-++..... .+|+.+++++.+| -+|-|+-
T Consensus 310 ~~lG--a~~~~~~----~~dva~~i~~~A~~~~vt~IViG~s~~~~~~~~~s~~~~l~r~~~~idi~iv~ 373 (895)
T PRK10490 310 QELG--AETATLS----DPAEEKAVLRYAREHNLGKIIIGRRASRRWWRRESFADRLARLGPDLDLVIVA 373 (895)
T ss_pred HHcC--CEEEEEe----CCCHHHHHHHHHHHhCCCEEEECCCCCCCCccCCCHHHHHHHhCCCCCEEEEe
Confidence 5432 3333332 4789999999999999999999987644333 2589999999997 6776664
No 58
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=96.01 E-value=2.7 Score=45.89 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=56.1
Q ss_pred HhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHH
Q 041687 56 LRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGV 135 (764)
Q Consensus 56 l~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~ 135 (764)
+++.+++..+--++.|+++|+.......+.+ -| ...-.-+.+-++|++ +.|.+++++.+.+.+.+.+.+..
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~~~----~~-Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~ 96 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDEEK----KR-GVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADT 96 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchhhc----cc-hHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHH
Confidence 3456899999889999999875421111111 01 112234567778877 57999999999999999887766
Q ss_pred HHHHHHHHHHHHHH
Q 041687 136 GSFVLSMIATILAS 149 (764)
Q Consensus 136 ~~~~~p~~~g~~~~ 149 (764)
..+...+.++..++
T Consensus 97 ~~v~~~~~~~~~~g 110 (335)
T TIGR00698 97 LILTSTFFLTVFLG 110 (335)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665555444
No 59
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=95.39 E-value=2.3 Score=45.77 Aligned_cols=154 Identities=14% Similarity=0.128 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHhccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHh
Q 041687 98 VLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLA---IVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALES 174 (764)
Q Consensus 98 ~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~---~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls 174 (764)
.++..-.+.+.++||..|+++..+.+++..|+. +.....++++-=+++++++..+. .+.......++++++=+
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~----l~~~l~~Gl~ll~~~Pg 110 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP----LPPELAVGLLLLGCCPG 110 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC----CCHHHHHhHHheeeCCC
Confidence 344445788999999999999999988765443 22223333333334555554443 21112223333343333
Q ss_pred hhhHHHHHHHHhhcccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHh
Q 041687 175 TISIHVILALLSDLKLLNSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVLIVFG 254 (764)
Q Consensus 175 ~Ts~~vv~~iL~elkll~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 254 (764)
.|+. .+...+. +.+. -++++.+.++.+++.++. -+...+.-++. .+...+. .++.++..++.=++.+.+
T Consensus 111 gv~S-~~~t~lA-----kGnV-alsV~~tsvStll~~f~t-Pllv~l~~~~~-v~~~~~~--m~~~i~~~vllP~~LG~~ 179 (319)
T COG0385 111 GVAS-NAMTYLA-----KGNV-ALSVCSTSVSTLLGPFLT-PLLVGLLAGGG-VPVDVGG--MFLSILLQVLLPFVLGQL 179 (319)
T ss_pred chhH-HHHHHHh-----cCcH-HHHHHHHHHHHHHHHHHH-HHHHHHHhcCC-CCCchHH--HHHHHHHHHHHHHHHHHH
Confidence 3444 3333332 2222 356667778888887665 44443332222 0012233 556666666666666777
Q ss_pred hHHHHHHHHHhc
Q 041687 255 LRPTMFWMMRKT 266 (764)
Q Consensus 255 ~r~~~~~i~~~~ 266 (764)
.||......++.
T Consensus 180 ~r~~~~~~~~~~ 191 (319)
T COG0385 180 LRPLLPKWVERL 191 (319)
T ss_pred HHHHHHHHHHHH
Confidence 788777666554
No 60
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.29 E-value=0.22 Score=49.86 Aligned_cols=128 Identities=19% Similarity=0.281 Sum_probs=84.4
Q ss_pred HHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccCh-----hHHHhccchhHHHHHHHHHH
Q 041687 66 SQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDI-----RIIQKSGRLAIVIGVGSFVL 140 (764)
Q Consensus 66 ~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~-----~~l~~~~~~~~~ia~~~~~~ 140 (764)
+-+++|+++|-..... ....+...+..+..++|.+|+++-- +.+++.++|++.+.+..++-
T Consensus 3 ~~li~Gi~lG~~~~~~--------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 3 IALILGILLGYFLRPP--------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeHHHHHHHHHHhccc--------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4467888888432111 1222677888999999999998844 35677889999999999888
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccccChhHHHHHHHHHHHhHHHHHHHHHHHH
Q 041687 141 SMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLNSELGRLAVSSSLISSAVNCFAVTFTGN 219 (764)
Q Consensus 141 p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~G~lals~a~i~D~~~~ill~~~~~ 219 (764)
+++.+.+++.++. .. ..+++.++.-+.- +.....+++|++ +.+.|.+++-+=++.+++++++. -+..
T Consensus 69 Sllgg~l~~~ll~-~~------~~~~lav~sG~Gw--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~-P~~~ 135 (191)
T PF03956_consen 69 SLLGGLLASLLLG-LS------LKESLAVASGFGW--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILI-PLLA 135 (191)
T ss_pred HHHHHHHHHHHhc-CC------HHHHHHHHccCcH--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 8888888777773 21 2344444433221 122223344443 66899988888888888887766 4443
No 61
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.20 E-value=0.63 Score=45.65 Aligned_cols=115 Identities=10% Similarity=0.201 Sum_probs=75.4
Q ss_pred hccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhH---HHhccchhHHH
Q 041687 57 RPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRI---IQKSGRLAIVI 133 (764)
Q Consensus 57 ~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~---l~~~~~~~~~i 133 (764)
+++++-...+-+++|+++|-. ++-.|.+ . .....+.+.++|+.+|++.+|++--++- +++.+.+...+
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~--~~~~~~~----~---~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~ 89 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGAL--GRTGPIF----L---PISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLL 89 (169)
T ss_pred cceeccccHHHHHHHHHHHHh--hhccCCC----C---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 555666667888899998843 2211111 1 2456678999999999999999887765 45666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhh
Q 041687 134 GVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSD 187 (764)
Q Consensus 134 a~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~e 187 (764)
++.-.++|.++++..++++.+.. .....=..+-+.|++|.+....+.
T Consensus 90 ~~~i~~~~~~~~~~~~~~~~~l~-------~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 90 GVIITLVPLLIALVIGRYLFKLN-------PGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-------HHHHHHHHHccccCcHHHHHHHHh
Confidence 77777788888777777544332 111222233466777887776554
No 62
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.91 E-value=1.5 Score=43.78 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhccChhHHHhccchhHH
Q 041687 105 LGIIYMVFLLSVRIDIRIIQKSGRLAIV 132 (764)
Q Consensus 105 lGli~~lF~~Gle~d~~~l~~~~~~~~~ 132 (764)
+.+.+.||..|+++|++++++..|+...
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~ 29 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKL 29 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHH
Confidence 4577899999999999999988766544
No 63
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.90 E-value=1 Score=53.68 Aligned_cols=127 Identities=15% Similarity=0.202 Sum_probs=67.6
Q ss_pred HHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhH
Q 041687 52 FWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAI 131 (764)
Q Consensus 52 ~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~ 131 (764)
..++...+|++..+|-.++|++++.+-... .-...++.+..+=+.+|...+|+++|+..+...+...+
T Consensus 231 ~a~la~~~Gls~~lGAFlAGl~l~~~~~~~------------~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il 298 (621)
T PRK03562 231 FGLLMEEVGLSMALGAFLAGVLLASSEYRH------------ALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRIL 298 (621)
T ss_pred HHHHHHHhCccHHHHHHHHHHHhcCCccHH------------HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 344555666777777777777776321110 12345566666666777778899999998876544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhh-HH-HHHHHHhhcccccChhHH
Q 041687 132 VIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTIS-IH-VILALLSDLKLLNSELGR 197 (764)
Q Consensus 132 ~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts-~~-vv~~iL~elkll~s~~G~ 197 (764)
.+.+..++.=++.+++.+.+++. .+..++.+|..++.-+ |. +++.+-.+.|+++.+...
T Consensus 299 ~~~~~~~~~K~~~~~~~~~~~g~-------~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~ 359 (621)
T PRK03562 299 ILLLGFLAIKIAMLWLLARPLGV-------PRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAK 359 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-------CHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHH
Confidence 22222222222233333333321 2356667777666422 22 334555666776655443
No 64
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.62 E-value=1.4 Score=52.44 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=67.5
Q ss_pred HHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhH
Q 041687 52 FWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAI 131 (764)
Q Consensus 52 ~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~ 131 (764)
..++.+.+|+..++|-.++|++++.+-... +-...++.+.++=+.+|...+|+++|++.+...+...+
T Consensus 228 ~a~l~~~~Gls~~LGAFlaGl~l~~s~~~~------------~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il 295 (601)
T PRK03659 228 SALFMDALGLSMALGTFIAGVLLAESEYRH------------ELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVL 295 (601)
T ss_pred HHHHHHHhCccHHHHHHHHHHHhcCCchHH------------HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHH
Confidence 334556677888888888888887431111 11334666666777778888999999998876654333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhh-HH-HHHHHHhhcccccChh
Q 041687 132 VIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTIS-IH-VILALLSDLKLLNSEL 195 (764)
Q Consensus 132 ~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts-~~-vv~~iL~elkll~s~~ 195 (764)
.+.+..++.=++.+++.+.+.+ . .+..++.+|..++.-. |. +++..-.+.|+++.+.
T Consensus 296 ~~~~~~l~~K~~~~~~~~~~~g-~------~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~ 354 (601)
T PRK03659 296 ISVVVLVAVKGLVLYLLARLYG-L------RSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQ 354 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-C------CHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHH
Confidence 2222222222223333332222 1 2355666666665533 22 3333344556655443
No 65
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=94.15 E-value=7.2 Score=42.61 Aligned_cols=99 Identities=8% Similarity=0.107 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhccChhHHHhccchhHHH--HH-HHH-HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHH
Q 041687 104 SLGIIYMVFLLSVRIDIRIIQKSGRLAIVI--GV-GSF-VLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIH 179 (764)
Q Consensus 104 ~lGli~~lF~~Gle~d~~~l~~~~~~~~~i--a~-~~~-~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~ 179 (764)
.++++++||-.|++++++++++..|+...+ +. ..+ +.|+ ++++++..+.... . .+.+|..+-...+.
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~~---p-----~l~~GliLv~~~Pg 116 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRDL---F-----EYIAGLILLGLARC 116 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCCC---H-----HHHHHHHHHHhcch
Confidence 346668999999999999998876654332 22 222 2333 3455555442221 1 12333332222211
Q ss_pred -HHHHHHhhcccccChhHHHHHHHHHHHhHHHHHHH
Q 041687 180 -VILALLSDLKLLNSELGRLAVSSSLISSAVNCFAV 214 (764)
Q Consensus 180 -vv~~iL~elkll~s~~G~lals~a~i~D~~~~ill 214 (764)
+.+.+++.+- +.+.. ++++...++.+++.++.
T Consensus 117 g~~S~v~T~lA--kGnva-lsv~lt~~stLl~~~~~ 149 (328)
T TIGR00832 117 IAMVFVWNQLA--KGDPE-YTLVLVAVNSLFQVFLY 149 (328)
T ss_pred HHHHHHHHHHc--CCCHH-HHHHHHHHHHHHHHHHH
Confidence 2223333332 33433 56666677887776555
No 66
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=94.09 E-value=12 Score=41.71 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=57.3
Q ss_pred CCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHHHHH
Q 041687 60 GNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFV 139 (764)
Q Consensus 60 ~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ 139 (764)
.+|.++--++.|+++.. +|.++ ++.+.+..+.+.+..+-+-+++.=++.|+++++|.++|.+.. ++.-.
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~--------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~ 92 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLID--------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGA 92 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcC--------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHH
Confidence 36777777788888875 44432 123456778888888877788888899999999999887543 33334
Q ss_pred HHHHHHHHHHHHHhhh
Q 041687 140 LSMIATILASSFVKGA 155 (764)
Q Consensus 140 ~p~~~g~~~~~~l~~~ 155 (764)
+..++|..+++.+.+.
T Consensus 93 ~g~viG~~va~~l~~~ 108 (378)
T PF05684_consen 93 VGTVIGAVVAFLLFGG 108 (378)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4445566666666543
No 67
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=94.04 E-value=9.4 Score=42.02 Aligned_cols=100 Identities=14% Similarity=0.165 Sum_probs=55.7
Q ss_pred HHHHHhhHHHHHHHHHhcC-CCCCCCc------------------------h-HHHHHHHHHHHHHHHHHHhC-----hh
Q 041687 249 VLIVFGLRPTMFWMMRKTP-GGKSPKR------------------------G-HLWFVNIMLLGCSLLAEITG-----LH 297 (764)
Q Consensus 249 ~~~~~v~r~~~~~i~~~~~-~~~~~~e------------------------~-~~~~il~~~l~~~~~ae~lG-----~~ 297 (764)
+....+..|+.+|+++|+. +.++.++ . .+.++.+.+.+..++.++++ +.
T Consensus 170 v~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP 249 (404)
T COG0786 170 VAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAICLAVGKIINQLLKSLGLALP 249 (404)
T ss_pred HHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3445667899999997741 1111111 0 12233444445566777776 45
Q ss_pred HHHHHHHHHHhcCCCCCC--hhHHHHHHHHHHHHHHHHHHHHHhcccccccce
Q 041687 298 GYFGAVILGINTPATPPM--GASLVDKIESIIWAVFMPCFLINVGRRVNFFSV 348 (764)
Q Consensus 298 ~~lGaf~~GL~lp~~~p~--~~~l~~kl~~~~~~~~lPiFF~~~Gl~~dl~~l 348 (764)
...++++.|+++.+.-+. ...+.++.-+.+.++-+-+|.+..=|++.++.+
T Consensus 250 ~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL 302 (404)
T COG0786 250 LFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWEL 302 (404)
T ss_pred HHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 688899999998764221 111223332333566666776666666666553
No 68
>PRK03818 putative transporter; Validated
Probab=93.91 E-value=0.64 Score=54.40 Aligned_cols=107 Identities=15% Similarity=0.196 Sum_probs=64.8
Q ss_pred HHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHH---HhccchhHHHHHHHHHHH
Q 041687 65 VSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRII---QKSGRLAIVIGVGSFVLS 141 (764)
Q Consensus 65 v~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l---~~~~~~~~~ia~~~~~~p 141 (764)
.+-+++|+++|-. .+.+. .-. .......+.++|+.+|+|.+|++.-++-+ ++.+.+...+++.-.++|
T Consensus 34 ~g~L~~gl~~G~~-----~~~~~-~~~---~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~ 104 (552)
T PRK03818 34 GGVLFGGIIVGHF-----VSQFG-LTL---DSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILG 104 (552)
T ss_pred HHHHHHHHHHhcc-----ccccC-ccc---ChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6777888888741 11110 001 24566779999999999999999988775 455556666666666666
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhc
Q 041687 142 MIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDL 188 (764)
Q Consensus 142 ~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el 188 (764)
.++++++.+++. .. .....=..+-+.|++|.+....+..
T Consensus 105 ~~~~~~~~~~~~-~~-------~~~~~G~~aGa~T~tp~l~aa~~~~ 143 (552)
T PRK03818 105 GLVTAILHKLFG-IP-------LPVMLGIFSGAVTNTPALGAGQQIL 143 (552)
T ss_pred HHHHHHHHHHhC-CC-------HHHHHHHhhccccccHHHHHHHHHH
Confidence 666665544332 21 1112222334667777776665433
No 69
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=93.12 E-value=0.24 Score=42.37 Aligned_cols=46 Identities=22% Similarity=0.063 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHhcCccEEEeccccCC--C-hhhH-HHHHHhhhcCCcceE
Q 041687 532 SMHDDICLMAFEKCTALVILPFKRAD--S-PQIR-TVTKNVIKLAPCSVG 577 (764)
Q Consensus 532 ~m~~dI~~~A~e~~adlIIlp~h~s~--~-~~~~-~~n~~Vl~~ApCsVg 577 (764)
.+++.+.+.|++.++|.|++|.|+.+ + ...+ ++..++.+.++|||.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCcee
Confidence 88999999999999999999999855 3 3334 788999999999974
No 70
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.07 E-value=3.6 Score=48.46 Aligned_cols=121 Identities=12% Similarity=0.066 Sum_probs=56.4
Q ss_pred hccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHH
Q 041687 57 RPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVG 136 (764)
Q Consensus 57 ~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~ 136 (764)
+.+|+..++|-.++|++++.+-++. .+ .+....+.++=..+|....|+++|+..+.+.....+.+.+.
T Consensus 244 ~~lGls~~lGAflaGl~l~~~~~~~-------~~-----~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~ 311 (558)
T PRK10669 244 ELFDVSFALGAFFAGMVLNESELSH-------RA-----AHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAI 311 (558)
T ss_pred HHcCccHHHHHHHHHHHHhCChhHH-------HH-----HHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665311110 00 11122233444566777889999999887643222111111
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhh-H-HHHHHHHhhcccccChhH
Q 041687 137 SFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTIS-I-HVILALLSDLKLLNSELG 196 (764)
Q Consensus 137 ~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts-~-~vv~~iL~elkll~s~~G 196 (764)
.++.=++.++..+.+.+ . .+..++.+|+.++.-+ + -+++.+-.+.|++..+..
T Consensus 312 ~~v~K~~~~~~~~~~~g-~------~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~ 366 (558)
T PRK10669 312 IVFGKSLAAFFLVRLFG-H------SRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQ 366 (558)
T ss_pred HHHHHHHHHHHHHHHhC-C------ChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHH
Confidence 11111111122222221 1 2456777777776422 2 234455556676665543
No 71
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=92.72 E-value=7.5 Score=42.17 Aligned_cols=152 Identities=11% Similarity=0.049 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhccchhHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhh
Q 041687 100 NVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIV---IGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTI 176 (764)
Q Consensus 100 ~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~---ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~T 176 (764)
+....+++..+.|..|++++.+++++..|+.-. .-...+++.=++++++........+ ..+..|......
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~-------~~l~~Gl~~~~~ 102 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLP-------PELALGLLILAC 102 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------HHHHHHHHHHhh
Confidence 466778888888999999999999876544322 1122222222234444444432211 112233332222
Q ss_pred hHHH-HHHH-HhhcccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 041687 177 SIHV-ILAL-LSDLKLLNSELGRLAVSSSLISSAVNCFAVTFTGNSSGQ-AAQAPPPGRFKHAALLMFLSLTFIVVLIVF 253 (764)
Q Consensus 177 s~~v-v~~i-L~elkll~s~~G~lals~a~i~D~~~~ill~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (764)
-++. -+.+ +... .+.+. ..++..+.++.+++.++. -+...... ++. .+......+..++..++.=.+.+-
T Consensus 103 lPtTv~S~v~~T~~--AgGN~-a~Al~~~~~snllgv~lt-P~ll~l~l~~~~---~~~~~~~~~~~L~~~vllP~~~Gq 175 (313)
T PF13593_consen 103 LPTTVSSSVVLTRL--AGGNV-ALALFNAVLSNLLGVFLT-PLLLLLLLGGSS---VSIDYASVLIKLVLTVLLPLVLGQ 175 (313)
T ss_pred CCchhhHHHHHHHH--cCCCH-HHHHHHHHHHhhhhHhHH-HHHHHHHhcCCc---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2111 1111 2222 22222 456777888888888776 44443322 222 111111133334444444444555
Q ss_pred hhHHHHHHHHHh
Q 041687 254 GLRPTMFWMMRK 265 (764)
Q Consensus 254 v~r~~~~~i~~~ 265 (764)
+.|+...+..+|
T Consensus 176 ~~r~~~~~~~~~ 187 (313)
T PF13593_consen 176 LLRRWVPKWVAR 187 (313)
T ss_pred HHHHHHHHHHHH
Confidence 666655544444
No 72
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.38 E-value=1.2 Score=52.19 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=75.0
Q ss_pred ccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhH---HHhccchhHHHH
Q 041687 58 PLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRI---IQKSGRLAIVIG 134 (764)
Q Consensus 58 rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~---l~~~~~~~~~ia 134 (764)
++.+-...+-+++|+++|- +++..|.+. -.| ......+.++|+.+|++.+|++--++- +++.+.+...+|
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~--~~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g 484 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFG--NIP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLG 484 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCcce--ecC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH
Confidence 3444556788888888885 333122111 122 445667899999999999999888765 456666677777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH-HHHhhhhHHHHHHHHhhc
Q 041687 135 VGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVA-ALESTISIHVILALLSDL 188 (764)
Q Consensus 135 ~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~-~~ls~Ts~~vv~~iL~el 188 (764)
++-.++|.++++.+++++.+.. .....| .+-+.|++|.+....+..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 485 IVVTILPLIITMLIGKYVLKYD--------PALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHhhccCCCcHHHHHHHHhc
Confidence 7777778777777775544432 122233 445778888887775544
No 73
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=92.36 E-value=2.1 Score=45.37 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=59.0
Q ss_pred HHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhHHHHHHHHHHhhhhHHHHHHHH
Q 041687 107 IIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAI-QLEENLGNSLKTVAALESTISIHVILALL 185 (764)
Q Consensus 107 li~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~-~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL 185 (764)
+..++|-.|-++|++...+.-||...+-+.-++++.+++.+++.++.... ........+.+.+-.+++.|.-..=..+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 34688999999999998888788777767778888888887777776321 00001134455566666666666666667
Q ss_pred hhcccccChhH
Q 041687 186 SDLKLLNSELG 196 (764)
Q Consensus 186 ~elkll~s~~G 196 (764)
.|.| -++|.|
T Consensus 131 ~qyG-d~~D~g 140 (314)
T TIGR00793 131 QQYG-TKEEAG 140 (314)
T ss_pred HHcC-CHhhhh
Confidence 7776 244444
No 74
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=92.08 E-value=0.97 Score=53.72 Aligned_cols=123 Identities=12% Similarity=0.100 Sum_probs=83.7
Q ss_pred CccceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHh
Q 041687 433 NSELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYK 512 (764)
Q Consensus 433 ~~e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 512 (764)
...-|||||++.......+++-+..++ .+.....+++|+..-..+..+ ....+++... .+.+
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA-~~~~a~~~av~v~~~~~~~~~----------------~~~~~~l~~~-~~La 307 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLA-SRLHAKWTAVYVETPELHRLS----------------EKEARRLHEN-LRLA 307 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHH-HHhCCCeEEEEEecccccccc----------------HHHHHHHHHH-HHHH
Confidence 455799999999999999999999886 456788899998542211111 0112333333 3344
Q ss_pred HhcCCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCc-ceEEE
Q 041687 513 HYQKGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPC-SVGIL 579 (764)
Q Consensus 513 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApC-sVgIl 579 (764)
++- +-.+.+. .+ .++.+.|.+.|++.++.-||+|-+..+ +...+++.+++++.+|- +|=|+
T Consensus 308 e~l--Gae~~~l--~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii 372 (890)
T COG2205 308 EEL--GAEIVTL--YG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIV 372 (890)
T ss_pred HHh--CCeEEEE--eC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEe
Confidence 442 2222222 22 799999999999999999999987644 33459999999999964 44443
No 75
>PRK10490 sensor protein KdpD; Provisional
Probab=92.05 E-value=0.46 Score=59.13 Aligned_cols=124 Identities=9% Similarity=0.098 Sum_probs=76.6
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEEeeecC
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYITRSIKD 676 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~~V~~ 676 (764)
..||++...|+|+.+..++.|+|||+..++.+++++|-+++....+++.++.+.+ .++ +..+. +.+.+......|.
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~-~~~-lA~~l-Ga~~~~~~~~dva- 325 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILS-ALR-LAQEL-GAETATLSDPAEE- 325 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHH-HHH-HHHHc-CCEEEEEeCCCHH-
Confidence 4689999999999999999999999999999999999866332111112222222 222 32221 2221221111222
Q ss_pred hhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEe
Q 041687 677 GAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQ 741 (764)
Q Consensus 677 g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvq 741 (764)
.++++++++. +.+.|++|++++. -| + --|-+-|-|... ....-|.||-
T Consensus 326 -~~i~~~A~~~--~vt~IViG~s~~~---------~~--~-~~~s~~~~l~r~--~~~idi~iv~ 373 (895)
T PRK10490 326 -KAVLRYAREH--NLGKIIIGRRASR---------RW--W-RRESFADRLARL--GPDLDLVIVA 373 (895)
T ss_pred -HHHHHHHHHh--CCCEEEECCCCCC---------CC--c-cCCCHHHHHHHh--CCCCCEEEEe
Confidence 3466666765 8999999998743 24 2 135566766633 2556788884
No 76
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=91.66 E-value=2.2 Score=41.18 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=65.8
Q ss_pred CChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccc----hhHHHHHH
Q 041687 61 NHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGR----LAIVIGVG 136 (764)
Q Consensus 61 ~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~----~~~~ia~~ 136 (764)
+-...+-+++|+++|-. +...|.+.. .| ......+.++|+.+|++.+|++--++-+..-.+ ....++.+
T Consensus 21 LG~~~G~L~vgL~~G~~--~~~~p~~~~--~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~ 93 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHF--GATGPLTWY--IP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGAL 93 (154)
T ss_pred ecccHHHHHHHHHHHhc--cccCCccee--cC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHH
Confidence 33467888999999853 331221111 11 346677899999999999999988876543322 23334444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH-HHHhhhhHHHHHHHHhhcc
Q 041687 137 SFVLSMIATILASSFVKGAIQLEENLGNSLKTVA-ALESTISIHVILALLSDLK 189 (764)
Q Consensus 137 ~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~-~~ls~Ts~~vv~~iL~elk 189 (764)
-.++|.+++..+...+.+.. . ....| .+=+.|++|.+....+..+
T Consensus 94 v~~~~~~~~~~~~~~~~~~~-------~-~~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 94 ITVVPTLLVAVALIKLLRIN-------Y-ALTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHHHHHHHHhCCC-------H-HHHHHHHhccccChHHHHHHHHHhc
Confidence 44455554444444333321 1 12222 3457788888877765443
No 77
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=91.08 E-value=6.2 Score=48.68 Aligned_cols=44 Identities=7% Similarity=-0.020 Sum_probs=34.4
Q ss_pred CCCccceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecc
Q 041687 431 GRNSELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEY 475 (764)
Q Consensus 431 ~~~~e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel 475 (764)
+.+...||.+..-.-.+-.-++.++..++ +....++.++|.+.-
T Consensus 626 ~~~~~~~v~~~F~GG~DDREALa~a~rma-~~p~v~lTVirf~~~ 669 (832)
T PLN03159 626 SNQVSHHVAVLFFGGPDDREALAYAWRMS-EHPGITLTVMRFIPG 669 (832)
T ss_pred ccccceeEEEEecCCcchHHHHHHHHHHh-cCCCeEEEEEEEEcc
Confidence 34556799999977777788888988885 566789999999853
No 78
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=90.99 E-value=2.8 Score=45.81 Aligned_cols=83 Identities=6% Similarity=0.151 Sum_probs=60.3
Q ss_pred cCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHHHH
Q 041687 59 LGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSF 138 (764)
Q Consensus 59 l~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~ 138 (764)
..+|.++---++=.+++.. +. +|.+....++.++++-+.+=|+-+|+++|++.+++.++|.+..+....
T Consensus 249 ~~~P~FvlgFl~~~~l~S~--~~---------lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~l~~~G~kp~~~g~i~~ 317 (335)
T TIGR00698 249 ITIPWFAVLFIGVAIFNSF--DL---------LPGEVVQALVPLDTFLLATAMAALGLTTNVSAVKKAGVKPLFASYAGY 317 (335)
T ss_pred CCCChHHHHHHHHHHHHHh--hh---------CcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHcCchHHHHHHHHH
Confidence 4567766544444444422 22 344556788999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHH
Q 041687 139 VLSMIATILASSFV 152 (764)
Q Consensus 139 ~~p~~~g~~~~~~l 152 (764)
+.-.+.+..+.+++
T Consensus 318 ~~l~~~~~~l~~~~ 331 (335)
T TIGR00698 318 LWLVGGGFVLNYLI 331 (335)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655555444
No 79
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.78 E-value=3.2 Score=40.15 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhccCCC--hHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChh
Q 041687 44 SVTILSAIFWLILRPLGNH--TFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIR 121 (764)
Q Consensus 44 lil~~~~l~~~ll~rl~~P--~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~ 121 (764)
+.+.++.+.+.+++++++| ..+|-++++.++.- .|... ...-+.+.+++.+++--.+|.+++.+
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~------------~~~P~~~~~~~qviiG~~iG~~f~~~ 67 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLE------------ITLPPWLLALAQVVIGILIGSRFTRE 67 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCcc------------CCCCHHHHHHHHHHHHHHHHccCCHH
Confidence 3456677888899999998 55555555555542 12101 11123456677778888999999999
Q ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 041687 122 IIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQ 157 (764)
Q Consensus 122 ~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~ 157 (764)
.+++..+ .+..++...+....++...++++.+..+
T Consensus 68 ~l~~~~~-~~~~~l~~~~~~l~~~~~~~~~l~~~~~ 102 (156)
T TIGR03082 68 VLAELKR-LWPAALLSTVLLLALSALLAWLLARLTG 102 (156)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9887654 4444455556666666777777765543
No 80
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=90.74 E-value=28 Score=37.75 Aligned_cols=179 Identities=11% Similarity=0.086 Sum_probs=89.7
Q ss_pred HHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHH
Q 041687 64 FVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMI 143 (764)
Q Consensus 64 iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~ 143 (764)
+.--+++|+.+|-..-+ ..+.+=. -+...++.--.+|+++.|+=.=+++|.+++++..|+.-.+. .+...-++
T Consensus 20 v~l~i~~Gi~lG~~~p~-----~~~~l~~-~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~-lsL~~Nwi 92 (342)
T COG0798 20 VFLAIAIGILLGVHFPG-----LAQLLGK-LEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLI-LSLFVNWI 92 (342)
T ss_pred HHHHHHHHHHHHhcccc-----hhhhccc-ceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHH-HHHHHHHH
Confidence 55557788888844222 1111100 02334455567888888888889999999988776533222 22333333
Q ss_pred HH----HHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccccChhHHHHHHHHHHHhHHHHHHHHHHHH
Q 041687 144 AT----ILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLNSELGRLAVSSSLISSAVNCFAVTFTGN 219 (764)
Q Consensus 144 ~g----~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~G~lals~a~i~D~~~~ill~~~~~ 219 (764)
++ +++++++....+ ......+.+|++=+. |-..+-. ++.+.+. ..++..-.+||++.+++.+....
T Consensus 93 i~P~lm~~la~~fl~~~p---ey~~GlILlglApC~-aMVivw~-----~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~ 162 (342)
T COG0798 93 IGPLLMFALAWFFLPDEP---EYRAGLILLGLAPCI-AMVIVWS-----GLAKGDR-ELTLVLVAFNSLLQIVLYAPLGK 162 (342)
T ss_pred HHHHHHHHHHHHHhCCCH---HHHHHHHHHHhhhhH-HHHHHHH-----hhccCcH-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 32 333333332211 112233344443332 2233322 2223332 35566678999999988833332
Q ss_pred HhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Q 041687 220 SSGQAAQAPPPGRFKHAALLMFLSLTFIVVLIVFGLRPTMFWMMRKT 266 (764)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~i~~~~ 266 (764)
...+... ..- .++.++..+...+.+-++...+.+++..|.
T Consensus 163 ~~l~v~~-----~~v--~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 163 FFLGVIS-----ISV--PFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred HHHhhcc-----ccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222211 112 345555555555555566666666666554
No 81
>PRK04972 putative transporter; Provisional
Probab=89.61 E-value=2.4 Score=49.78 Aligned_cols=105 Identities=11% Similarity=0.164 Sum_probs=65.1
Q ss_pred hccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHH---HhccchhHHH
Q 041687 57 RPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRII---QKSGRLAIVI 133 (764)
Q Consensus 57 ~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l---~~~~~~~~~i 133 (764)
+++++-...|-+++|+++|-. |. . .| ..+.++|+.+|+|.+|++.-++-+ ++.+.+...+
T Consensus 33 ~~~~LG~~~g~L~vgl~~g~~--~~-~-------~~-------~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~ 95 (558)
T PRK04972 33 GSIQLGNSIGVLVVSLLLGQQ--HF-S-------IN-------TDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLML 95 (558)
T ss_pred eeEecCcchHHHHHHHHHHhC--CC-C-------CC-------hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHH
Confidence 445677777999999999953 22 1 11 123589999999999999988765 4555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHh
Q 041687 134 GVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLS 186 (764)
Q Consensus 134 a~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~ 186 (764)
+++-.++++++++.+++++.... ...+ =..+-+.|++|.+....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~--G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 96 ALVMVGSALVIALGLGKLFGWDI------GLTA--GMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCH------HHHH--HHhhccccCcHHHHHHHH
Confidence 66666666666666555432211 1111 122345677777766544
No 82
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=89.45 E-value=14 Score=41.40 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHH-HHHHHHHHHHhhccCh
Q 041687 42 ITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFES-LGIIYMVFLLSVRIDI 120 (764)
Q Consensus 42 i~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~-lGli~~lF~~Gle~d~ 120 (764)
+..++.+.....++.+.+|++.++|--++|+++.-+-... .+-.+.++.+.+ +=+-+|...+|+++|+
T Consensus 224 ~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~-----------~~l~~~i~~~~~~~fiplFFi~vG~~~dl 292 (397)
T COG0475 224 ILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRK-----------HELEEKIEPFGDGLFIPLFFISVGMSLDL 292 (397)
T ss_pred HHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccch-----------HHHHHHHHhHHhHHHHHHHHHHhhHHcCH
Confidence 3445555566777888889999999999999998642221 123566777777 7777888999999999
Q ss_pred hHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 041687 121 RIIQKSGRLAIVIGVGSFVLSMIATILASSFVK 153 (764)
Q Consensus 121 ~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~ 153 (764)
+.+......++.+....++.=+...+..+..++
T Consensus 293 ~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g 325 (397)
T COG0475 293 GVLLENLLLILLLVALAILGKILGAYLAARLLG 325 (397)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999887766444444433333444444444443
No 83
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=88.87 E-value=7.5 Score=41.69 Aligned_cols=48 Identities=25% Similarity=0.439 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 041687 105 LGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFV 152 (764)
Q Consensus 105 lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l 152 (764)
+++.++.|..|.++|++.+.+.+.+.+.+++..+.+.+.+++.+..++
T Consensus 196 f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rll 243 (312)
T PRK12460 196 LLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLV 243 (312)
T ss_pred EeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 388899999999999999999999999999998888888888877666
No 84
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=88.69 E-value=4.2 Score=47.84 Aligned_cols=81 Identities=7% Similarity=0.115 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhc-----cCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhcc
Q 041687 44 SVTILSAIFWLILRP-----LGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRI 118 (764)
Q Consensus 44 lil~~~~l~~~ll~r-----l~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~ 118 (764)
+.++++..+++++-| +++-.+.+-+++|+++|-..... | +.+.++|+++|+|.+|++.
T Consensus 13 l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~i----------~-------~~v~~~gl~lFvy~vG~~~ 75 (562)
T TIGR03802 13 IALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQI----------D-------PGVKAVFFALFIFAIGYEV 75 (562)
T ss_pred HHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCCC----------C-------hHHHHHHHHHHHHHhhhcc
Confidence 344444555555544 55777889999999999532211 1 2367799999999999999
Q ss_pred ChhHHHhccchhHHHHHHHHHHH
Q 041687 119 DIRIIQKSGRLAIVIGVGSFVLS 141 (764)
Q Consensus 119 d~~~l~~~~~~~~~ia~~~~~~p 141 (764)
-++-++.-.|+.+...+.++++.
T Consensus 76 Gp~Ff~~l~~~g~~~~~~a~~~~ 98 (562)
T TIGR03802 76 GPQFFASLKKDGLREIILALVFA 98 (562)
T ss_pred CHHHHHHHHhccHHHHHHHHHHH
Confidence 99887655555555544444433
No 85
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=88.60 E-value=42 Score=36.76 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCh--HHH-HHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHH
Q 041687 38 LIIPITSVTILSAIFWLILRPLGNHT--FVS-QMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLL 114 (764)
Q Consensus 38 ~llqi~lil~~~~l~~~ll~rl~~P~--iv~-~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~ 114 (764)
...|.++.++++.+.++++..+++|. ..| -+++|++.+-. +. ++.- . +.+-..|.+.+=-.+
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~--~~-------~l~~---P---~~l~~~~q~ilG~~i 71 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLR--GL-------TLPL---P---RGLFKAGQVILGIMI 71 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--cc-------cccC---C---hHHHHHHHHHHHHHH
Confidence 35678888889999999999988764 344 44555555521 11 1111 1 445556666666789
Q ss_pred hhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041687 115 SVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAI 156 (764)
Q Consensus 115 Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~ 156 (764)
|.++..+.+.. -++.+.+.....++....+...+|++.++.
T Consensus 72 g~~~t~s~l~~-l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~ 112 (352)
T COG3180 72 GASLTPSVLDT-LKSNWPIVLVVLLLTLLSSILLGWLLKRFS 112 (352)
T ss_pred hhhcCHHHHHH-HHHcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999888754 355555556666666677777777776554
No 86
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=88.53 E-value=16 Score=39.85 Aligned_cols=46 Identities=13% Similarity=0.297 Sum_probs=35.9
Q ss_pred HHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 041687 108 IYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVK 153 (764)
Q Consensus 108 i~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~ 153 (764)
..++|..|..+|++...+.-||...+.+.-+.+..+++.+.+.++.
T Consensus 54 ~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g 99 (326)
T PRK05274 54 AVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIG 99 (326)
T ss_pred HHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcch
Confidence 3788999999999998888888877777777777777776666554
No 87
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=88.29 E-value=13 Score=40.23 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=78.6
Q ss_pred cCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHHHH
Q 041687 59 LGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSF 138 (764)
Q Consensus 59 l~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~ 138 (764)
++.|.+++.+ .|+++...... .|.--.+.++.+++...-+-||..|+.++.+.+++..|..+.....-.
T Consensus 180 ~~nP~iia~i-~Gl~~~~~~i~----------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kl 248 (321)
T TIGR00946 180 IKFPPLWAPL-LSVILSLVGFK----------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRF 248 (321)
T ss_pred HhCCChHHHH-HHHHHHHHhhc----------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHH
Confidence 5788888754 55777654322 233457889999999999999999999998888766666655544444
Q ss_pred -HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccccChhHHHHHHHHHHHhHHHHHHH
Q 041687 139 -VLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLNSELGRLAVSSSLISSAVNCFAV 214 (764)
Q Consensus 139 -~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~G~lals~a~i~D~~~~ill 214 (764)
+.|++. +.++..+. .. ....-..+.++.+.+++...++.+.--.+. +.+-+...++-+++.+.+
T Consensus 249 il~P~i~-~~~~~~~~-l~-------~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tl 313 (321)
T TIGR00946 249 LVQPAVM-AGISKLIG-LR-------GLELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISL 313 (321)
T ss_pred HHHHHHH-HHHHHHhC-CC-------hHHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHH
Confidence 445543 33333332 11 122333445555555555666655321232 444455555555555544
No 88
>PRK04972 putative transporter; Provisional
Probab=87.97 E-value=5.3 Score=46.92 Aligned_cols=132 Identities=14% Similarity=0.222 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHhc-----cCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhc
Q 041687 43 TSVTILSAIFWLILRP-----LGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVR 117 (764)
Q Consensus 43 ~lil~~~~l~~~ll~r-----l~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle 117 (764)
++-+++..+++.+-=+ +++-.--|-+++|+++|- +++..|.+.. .| .....++.++|+.+|+..+|+.
T Consensus 387 ~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~--~~~~~~~~~~--~p---~~a~~~l~~~GL~lFla~vGl~ 459 (558)
T PRK04972 387 CAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF--LRANHPTFGY--IP---QGALNMVKEFGLMVFMAGVGLS 459 (558)
T ss_pred HHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh--ccccCCCcee--eC---HHHHHHHHHHhHHHHHHHHHHh
Confidence 3334444444444333 334445678899999984 3332332211 22 4456788999999999999998
Q ss_pred cChhH---HHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhc
Q 041687 118 IDIRI---IQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDL 188 (764)
Q Consensus 118 ~d~~~---l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el 188 (764)
--.+- +++.+.+.+.+|.+-.++|.++++.+++++.+.. .....=+.+-+.|++|.+....+..
T Consensus 460 aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~-------~~~~~G~~aG~~t~~~~l~~~~~~~ 526 (558)
T PRK04972 460 AGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMN-------RALLFGAIMGARTCAPAMEIISDTA 526 (558)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHhCCCCCcHHHHHHHhhc
Confidence 76654 4556777777888888888888888886666542 1122223456778888877765443
No 89
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=87.71 E-value=53 Score=36.88 Aligned_cols=305 Identities=11% Similarity=0.060 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHhccCCChHHHHHHHHHh---hchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHh-----
Q 041687 44 SVTILSAIFWLILRPLGNHTFVSQMLAGIL---MGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLS----- 115 (764)
Q Consensus 44 lil~~~~l~~~ll~rl~~P~iv~~ilaGii---lGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~G----- 115 (764)
++.++..+++++=+| +|-+=.|+=+|.+ ++|+.+-. . .++|.+..+..+.+-+-+=.+.+|.+.
T Consensus 36 ~~~v~G~~l~~IG~r--iPi~k~yiGGg~il~~f~ps~Lv~-~-----~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GS 107 (414)
T PF03390_consen 36 VMMVLGFLLGEIGDR--IPILKDYIGGGAILCIFVPSALVY-F-----GLIPESVVEAVTNFMKGSNFLYFFIAALIVGS 107 (414)
T ss_pred HHHHHHHHHHHHHhh--ChhhhccCChHHHHHHHHHHHHHH-c-----CCCCHHHHHHHHHHhccCChHHHHHHHHHHhh
Confidence 333444444444443 3544444444433 35655432 1 234544444444443332223334333
Q ss_pred -hccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcccccCh
Q 041687 116 -VRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLKLLNSE 194 (764)
Q Consensus 116 -le~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~ 194 (764)
+.||-+.+.|...|-+..-+.+.+..++++.+++.+++..+.... .....-.++--...-+.|.-.-.=+-++...++
T Consensus 108 ILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~i-~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~ 186 (414)
T PF03390_consen 108 ILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFKDAI-FYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEE 186 (414)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHhhhcCCCccccHhHHHHHHHHHhCCCHHH
Confidence 378888888888888877778888888888877777765432100 001111111111112222222111223444455
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhccCC-CCCC-------CC---c-ch----HHHHHHHHHHHHHHHHHHHhhHHH
Q 041687 195 LGRLAVSSSLISSAVNCFAVTFTGNSSGQAA-QAPP-------PG---R-FK----HAALLMFLSLTFIVVLIVFGLRPT 258 (764)
Q Consensus 195 ~G~lals~a~i~D~~~~ill~~~~~~~~~~~-~~~~-------~~---~-~~----~~~~~~~~~~~~~~~~~~~v~r~~ 258 (764)
.=..++.+.++.++++++.- .+.-.+.... +-+| .. . .. ......+... +++.+.+|....+
T Consensus 187 ~~s~~ipa~~lgNi~AIi~a-glL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~G-llla~~~y~~G~l 264 (414)
T PF03390_consen 187 YFSQLIPALTLGNIFAIIFA-GLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAG-LLLACSFYILGVL 264 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHHHH-HHHHHHHHHHHHH
Confidence 55556777888888888776 5554432211 0000 00 0 00 0011122222 2334445555544
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 041687 259 MFWMMRKTPGGKSPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATPPMGASLVDKIESIIWAVFMPCFLIN 338 (764)
Q Consensus 259 ~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~~~~l~~kl~~~~~~~~lPiFF~~ 338 (764)
+..++ .. +.+.+.++..++. ..+ | ++|+. -++=.++...|...-+.+...+-
T Consensus 265 l~~~i-------~i-h~~a~mIi~~~i~-----K~~-----------~-lvP~~---~e~~a~~~~~f~~~~lt~~lLvg 316 (414)
T PF03390_consen 265 LSKLI-------GI-HAYAWMIILVAIV-----KAF-----------G-LVPES---LEEGAKQWYKFFSKNLTWPLLVG 316 (414)
T ss_pred HHHhc-------CC-cHHHHHHHHHHHH-----HHh-----------C-cCCHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 12 2233333322221 111 1 12221 22223344444455555556666
Q ss_pred hccc-ccccce---------e----ee---------ec-----cChhHHHHHHHHHhhh-hHHHHHHHHhhhhcCCCC
Q 041687 339 VGRR-VNFFSV---------G----LK---------TF-----LTVEDAVSLGLLLNCR-GLYDVQIFSRAIQQQMIT 387 (764)
Q Consensus 339 ~Gl~-~dl~~l---------i----~i---------lg-----~~~~~a~~lg~~m~~k-G~~~l~~~~~~~~~~~i~ 387 (764)
+|+. +|+..+ + .+ +| +|...++.-|+.|+.+ |.=|+++++.+.+..++.
T Consensus 317 iGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp 394 (414)
T PF03390_consen 317 IGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMP 394 (414)
T ss_pred HHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence 7777 787665 0 00 11 7889999999777655 456788888887777765
No 90
>COG2985 Predicted permease [General function prediction only]
Probab=86.46 E-value=2.8 Score=47.00 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhccChhH---HHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH-HHHhhhhHH
Q 041687 104 SLGIIYMVFLLSVRIDIRI---IQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVA-ALESTISIH 179 (764)
Q Consensus 104 ~lGli~~lF~~Gle~d~~~---l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~-~~ls~Ts~~ 179 (764)
++|+++|.+.+|+|.-+.. +++.+++-..++++- ++.+.++++.+.+..+.+. .+..| .+-+.||+|
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~~~~-----~~~~Gm~sGAlTsTP 132 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFGIDL-----GLIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcCCCH-----HHhhhhhcccccCCc
Confidence 8999999999999998876 577777776665543 4444555566665554221 11111 223456666
Q ss_pred HHHH---HHhhccc
Q 041687 180 VILA---LLSDLKL 190 (764)
Q Consensus 180 vv~~---iL~elkl 190 (764)
.... +|+|++.
T Consensus 133 ~L~aa~~~L~~lg~ 146 (544)
T COG2985 133 GLGAAQDILRELGA 146 (544)
T ss_pred hhHHHHHHHHhhcc
Confidence 6554 4555553
No 91
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=84.98 E-value=69 Score=35.61 Aligned_cols=25 Identities=8% Similarity=0.434 Sum_probs=18.1
Q ss_pred HHHHHHhhccChhHHHhccchhHHH
Q 041687 109 YMVFLLSVRIDIRIIQKSGRLAIVI 133 (764)
Q Consensus 109 ~~lF~~Gle~d~~~l~~~~~~~~~i 133 (764)
.+.=.+|+..+++.++|.+|+....
T Consensus 72 ~fF~~igL~~~~~~lkkgg~~~~~~ 96 (368)
T PF03616_consen 72 IFFTTIGLGASLKLLKKGGKAVLIF 96 (368)
T ss_pred HHHHHHhhccchhhHHhhHHHHHHH
Confidence 3333678888999999888776543
No 92
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=84.32 E-value=4.5 Score=42.47 Aligned_cols=107 Identities=12% Similarity=0.052 Sum_probs=61.7
Q ss_pred EeeccCcchHHHHHHHHHHhhCCC-eEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEEeeecChhhH
Q 041687 602 VLFIGGPDDREALAYGARMVENHS-IMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYITRSIKDGAET 680 (764)
Q Consensus 602 ~~f~gG~ddreAl~~a~rma~~~~-v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~~V~~g~~~ 680 (764)
+.+.=.|.|+-|++.|.|+.++.+ .++|++.+=+++. -+++.+++.-.. +-++....+-..-.|.|+
T Consensus 30 ~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a----------~~~~~lr~aLAm--GaD~avli~d~~~~g~D~ 97 (256)
T PRK03359 30 ADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL----------TNAKGRKDVLSR--GPDELIVVIDDQFEQALP 97 (256)
T ss_pred CccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch----------hhHHHHHHHHHc--CCCEEEEEecCcccCcCH
Confidence 445567899999999999999764 8999999865421 112345444433 333333222212223344
Q ss_pred HH-------HHHhhcCCccEEEEeccC-CC----CchhhcccCCCCCCCccchhhhh
Q 041687 681 AG-------VLNAIGDDFDLILVGRRH-DR----HSQVLLGLSEWSEIEELGVVGDI 725 (764)
Q Consensus 681 ~~-------~i~~~~~~~DLiiVGr~~-~~----~s~~~~gl~~w~e~~eLG~iGd~ 725 (764)
.. ++++. +||||+-|++. +. -.++++++-+| |-+..+-++
T Consensus 98 ~~tA~~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~---P~vt~v~~l 149 (256)
T PRK03359 98 QQTASALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNI---PAINGVSKI 149 (256)
T ss_pred HHHHHHHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCC---CceeeEEEE
Confidence 33 34443 69999999986 22 23444444444 555544443
No 93
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=83.62 E-value=12 Score=39.54 Aligned_cols=64 Identities=13% Similarity=0.204 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhChhHHHHHHHHHHhcCCCCCChh-HHHHHHHHHHHHHHHHHHHHHhcccccccce
Q 041687 283 MLLGCSLLAEITGLHGYFGAVILGINTPATPPMGA-SLVDKIESIIWAVFMPCFLINVGRRVNFFSV 348 (764)
Q Consensus 283 ~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~p~~~-~l~~kl~~~~~~~~lPiFF~~~Gl~~dl~~l 348 (764)
.....+.+++.++++.++|-.++|+++.... ++. .-.+.++.+ ..+-+.++....|+++|+..+
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l 67 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERL 67 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHH
Confidence 3455678899999999999999999996431 110 111234444 456667788889999998665
No 94
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=83.39 E-value=32 Score=38.60 Aligned_cols=163 Identities=7% Similarity=0.033 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHhc--cCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhcc
Q 041687 41 PITSVTILSAIFWLILRP--LGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRI 118 (764)
Q Consensus 41 qi~lil~~~~l~~~ll~r--l~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~ 118 (764)
.+.+.+.++..+...++. +.+|.++.-+++|+++.... .... . .. -.++.++.++++++-+++-.+=..+
T Consensus 223 ~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~~~----~--~~-~~~~~i~~I~~~sLdlfl~~AlmsL 294 (398)
T TIGR00210 223 LIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SFKK----F--PW-VAERAVSVIGNVSLSLFLAIALMSL 294 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HHhC----c--cc-cchHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555566666666664 67999999999999998642 1111 0 01 1244899999999999988888899
Q ss_pred ChhHHHhccchhHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhhhhhHHHHHHHHHHhhhhHH--HHHHHHhhcccccChh
Q 041687 119 DIRIIQKSGRLAIVIGVGSFVLSMIATILA-SSFVKGAIQLEENLGNSLKTVAALESTISIH--VILALLSDLKLLNSEL 195 (764)
Q Consensus 119 d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~-~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~--vv~~iL~elkll~s~~ 195 (764)
++..+....-..+.+.+.++++..+....+ ...+++.+.. .-..+...|..+..|+.+ -...+-++.|-.+...
T Consensus 295 ~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~yda---aV~~ag~~G~~lGatptaianm~av~~~yg~s~~af 371 (398)
T TIGR00210 295 QLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYDA---AVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAF 371 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHH---HHHhcccccccccchHHHHHHHHHHHhccCCCCcce
Confidence 999999998888888888888777554433 3333332211 112223445555444433 3333444455444333
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 041687 196 GRLAVSSSLISSAVNCFAV 214 (764)
Q Consensus 196 G~lals~a~i~D~~~~ill 214 (764)
=-.=+-.+.+-|++...++
T Consensus 372 ~ivPlvgaf~id~~n~~~i 390 (398)
T TIGR00210 372 IVVPLVGAFFIDIINALVI 390 (398)
T ss_pred ehhhhHHHHHHHHhhHHHH
Confidence 3333456788888877665
No 95
>PRK12342 hypothetical protein; Provisional
Probab=81.84 E-value=6.5 Score=41.23 Aligned_cols=95 Identities=12% Similarity=0.061 Sum_probs=57.9
Q ss_pred EeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHH-HHHHHHhcccCCCcEE-EEEeeecChhh
Q 041687 602 VLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLN-MINGFRMTCINNSNVE-YITRSIKDGAE 679 (764)
Q Consensus 602 ~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~-~~~e~~~~~~~~~~v~-y~e~~V~~g~~ 679 (764)
+.+.=.|.|+-|++.|.|+.+ .+.++|++.+=++. .+++ .+++.-.. +-++.. ..+... .|.|
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp~~-----------a~~~~l~r~alam--GaD~avli~d~~~-~g~D 93 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLAT-DGDEIAALTVGGSL-----------LQNSKVRKDVLSR--GPHSLYLVQDAQL-EHAL 93 (254)
T ss_pred CCccCChhhHHHHHHHHHHhh-cCCEEEEEEeCCCh-----------HhHHHHHHHHHHc--CCCEEEEEecCcc-CCCC
Confidence 455568899999999999995 57899999986442 1222 33443333 223332 333322 2345
Q ss_pred HHH-------HHHhhcCCccEEEEeccCCCC-----chhhcccCCC
Q 041687 680 TAG-------VLNAIGDDFDLILVGRRHDRH-----SQVLLGLSEW 713 (764)
Q Consensus 680 ~~~-------~i~~~~~~~DLiiVGr~~~~~-----s~~~~gl~~w 713 (764)
+.. +++.. +||||+-|+..... .++++.+-+|
T Consensus 94 ~~ata~~La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~ 137 (254)
T PRK12342 94 PLDTAKALAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQL 137 (254)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCC
Confidence 533 34543 59999999986332 5566666666
No 96
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=81.60 E-value=90 Score=34.42 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=26.5
Q ss_pred cChhHHHHHHHHHhhhhH-HHHHHHHhhhhcCCCC
Q 041687 354 LTVEDAVSLGLLLNCRGL-YDVQIFSRAIQQQMIT 387 (764)
Q Consensus 354 ~~~~~a~~lg~~m~~kG~-~~l~~~~~~~~~~~i~ 387 (764)
+|...++.-|+.|+.+|. =|+.+++.+-+..+++
T Consensus 379 YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM~Lmp 413 (438)
T COG3493 379 YPVEAAITAGLCMANMGGTGDVAVLSAADRMELMP 413 (438)
T ss_pred CchHHHHHHhHHhcCCCCCCchHHhhhcchhcccc
Confidence 788888888899977765 5677777777777765
No 97
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=80.69 E-value=7.2 Score=38.56 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=53.3
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEEeee--cC
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYITRSI--KD 676 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~~V--~~ 676 (764)
+|++.+.||+|.--.|.+..++.+..+.+++++++...-.. +...+.++++++..+.. . ...+.+... ..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~------~s~~~~~~v~~~~~~~~-i-~~~~~~~~~~~~~ 72 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLRE------ESDEEAEFVEEICEQLG-I-PLYIVRIDEDRKK 72 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSC------CHHHHHHHHHHHHHHTT---EEEEEE--CHCCT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCc------ccchhHHHHHHHHHhcC-C-ceEEEEeeeeecc
Confidence 58999999999999999999999999999999999754221 22245566777765522 1 111111111 11
Q ss_pred hhhHHH--------HHHhhc--CCccEEEEeccCC
Q 041687 677 GAETAG--------VLNAIG--DDFDLILVGRRHD 701 (764)
Q Consensus 677 g~~~~~--------~i~~~~--~~~DLiiVGr~~~ 701 (764)
+..... ++.+.+ .++|.++.|-|.+
T Consensus 73 ~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d 107 (182)
T PF01171_consen 73 GSNIEECARELRYQFLREIAKEEGCNKIALGHHLD 107 (182)
T ss_dssp TSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH
T ss_pred cCCHHHHHHHHHHHHHHHhhhcccccceeecCcCC
Confidence 222222 233333 5689999998863
No 98
>PRK03818 putative transporter; Validated
Probab=80.46 E-value=13 Score=43.76 Aligned_cols=106 Identities=8% Similarity=0.114 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHh----ccchhHHHHHHHHH
Q 041687 64 FVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQK----SGRLAIVIGVGSFV 139 (764)
Q Consensus 64 iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~----~~~~~~~ia~~~~~ 139 (764)
.-|-+++|+++|-. +...|.+ +-.| ......+.++|+.+|+..+|++--..-+.. .+.+...+|.+-.+
T Consensus 403 ~~G~L~~gl~~g~~--~~~~~~~--~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~ 475 (552)
T PRK03818 403 AGGPLIVALILGRI--GSIGKLY--WFMP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITA 475 (552)
T ss_pred chHHHHHHHHHHhc--cCCCCce--eecC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHH
Confidence 45788888888843 3312211 1123 345667888999999999999887766543 35666677777788
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH-HHHhhhhHHHHHHH
Q 041687 140 LSMIATILASSFVKGAIQLEENLGNSLKTVA-ALESTISIHVILAL 184 (764)
Q Consensus 140 ~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~-~~ls~Ts~~vv~~i 184 (764)
+|.++++.+++++.+.. ....+| .+-+.|++|.+...
T Consensus 476 ~~~~~~~~~~~~~~~~~--------~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 476 VPLLIVGILARMLAKMN--------YLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHHcCC--------HHHHHHHHhccCCCcHHHHHH
Confidence 88888888776655442 122333 44677888887665
No 99
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=79.63 E-value=7.8 Score=46.47 Aligned_cols=127 Identities=14% Similarity=0.152 Sum_probs=75.5
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEEeeecC
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYITRSIKD 676 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~~V~~ 676 (764)
..+|++...|++....-.+.|.|+|+..+++.|++++-+++.....+ .+++.-++.++ ..+.-...-...|.+. |.
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~-~~~~~l~~~~~-Lae~lGae~~~l~~~d-v~- 323 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSE-KEARRLHENLR-LAEELGAEIVTLYGGD-VA- 323 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccH-HHHHHHHHHHH-HHHHhCCeEEEEeCCc-HH-
Confidence 46899999999999999999999999999999999998876542221 22212122121 1111111111223221 11
Q ss_pred hhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEee
Q 041687 677 GAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQQ 742 (764)
Q Consensus 677 g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvqq 742 (764)
.++.+..+.. +.--|++|+++.. .|.+.-+ |.+.|-|+.. ...-.|-+|--
T Consensus 324 -~~i~~ya~~~--~~TkiViG~~~~~---------rw~~~~~-~~l~~~L~~~--~~~idv~ii~~ 374 (890)
T COG2205 324 -KAIARYAREH--NATKIVIGRSRRS---------RWRRLFK-GSLADRLARE--APGIDVHIVAL 374 (890)
T ss_pred -HHHHHHHHHc--CCeeEEeCCCcch---------HHHHHhc-ccHHHHHHhc--CCCceEEEeeC
Confidence 2344555544 7889999999754 3533222 7777877743 34445555543
No 100
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=79.27 E-value=93 Score=33.19 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhccChhHHHhccch--hHHHHHH-H-HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH-HhhhhH
Q 041687 104 SLGIIYMVFLLSVRIDIRIIQKSGRL--AIVIGVG-S-FVLSMIATILASSFVKGAIQLEENLGNSLKTVAAL-ESTISI 178 (764)
Q Consensus 104 ~lGli~~lF~~Gle~d~~~l~~~~~~--~~~ia~~-~-~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~-ls~Ts~ 178 (764)
-..+.+.||..|+.++++.+++..|+ ....+++ . ++.|++. +.++.++... . ....|.. ++.+..
T Consensus 11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~~l~----~-----~~~~glvL~~~~P~ 80 (286)
T TIGR00841 11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVFKLP----P-----ELAVGVLIVGCCPG 80 (286)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHhCCC----H-----HHHHHHHheeeCCC
Confidence 34488899999999999999887653 4444433 2 3455543 4444444211 1 1112222 122222
Q ss_pred HHHHHHHhhcccccChhHHHHHHHHHHHhHHHHHHH
Q 041687 179 HVILALLSDLKLLNSELGRLAVSSSLISSAVNCFAV 214 (764)
Q Consensus 179 ~vv~~iL~elkll~s~~G~lals~a~i~D~~~~ill 214 (764)
+..+.++.++---| ..++.+...++-+.+.+.+
T Consensus 81 ~~~s~v~t~~~~gn---~~la~~~~~~stlls~vt~ 113 (286)
T TIGR00841 81 GTASNVFTYLLKGD---MALSISMTTCSTLLALGMM 113 (286)
T ss_pred chHHHHHHHHhCCC---HhhhhHHHHHHHHHHHHHH
Confidence 22233344432122 3456666667777777665
No 101
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=78.77 E-value=12 Score=36.97 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=32.8
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeee
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIA 635 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~ 635 (764)
+|++.+.||.|.--++.++.+.++..+.+++++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5899999999999999999999888778899998853
No 102
>PRK05326 potassium/proton antiporter; Reviewed
Probab=78.43 E-value=13 Score=43.76 Aligned_cols=63 Identities=17% Similarity=0.311 Sum_probs=37.9
Q ss_pred HHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhc
Q 041687 54 LILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKS 126 (764)
Q Consensus 54 ~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~ 126 (764)
.+.+.+|.+.+++-.++|+++|..-. .. ........+.++.+...++.+..|+.+|++.+...
T Consensus 237 ~~a~~lg~Sg~la~~iaGl~l~n~~~-----~~-----~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~ 299 (562)
T PRK05326 237 ALTAALGGSGFLAVYLAGLVLGNRPI-----RH-----RHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI 299 (562)
T ss_pred HHHHHHCCcHHHHHHHHHHHHhCCcc-----cc-----hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444555556666666666653210 00 01124456667777778888899999999877643
No 103
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=78.16 E-value=5 Score=34.09 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=27.7
Q ss_pred EEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEee
Q 041687 600 VCVLFIGGPDDREALAYGARMVENHSIMLTIIRFI 634 (764)
Q Consensus 600 i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~ 634 (764)
|++++.||+|+..++.++.+.+ ..+.+++.+++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence 4789999999999999999987 446677777764
No 104
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=78.03 E-value=1.3e+02 Score=33.97 Aligned_cols=97 Identities=12% Similarity=0.144 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHH---HHHhccCCChHH-HHHHH--HHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHH
Q 041687 41 PITSVTILSAIFW---LILRPLGNHTFV-SQMLA--GILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLL 114 (764)
Q Consensus 41 qi~lil~~~~l~~---~ll~rl~~P~iv-~~ila--GiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~ 114 (764)
-.++++++++.+. .++||+.+|.-+ |-+++ +..++|..++. . .-|+. . +-++=+.++.=.+
T Consensus 11 la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~-~-----~~fd~----~---l~~~lm~~fFati 77 (398)
T TIGR00210 11 VAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGT-E-----VNFDF----S---LRDPLMLIFFTTI 77 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccE-E-----EEcCh----h---HHHHHHHHHHHHh
Confidence 3444555555544 346788898643 33333 34456665554 2 12321 1 1122234444467
Q ss_pred hhccChhHHHhccchhHHHHHHH---HHHHHHHHHHHHH
Q 041687 115 SVRIDIRIIQKSGRLAIVIGVGS---FVLSMIATILASS 150 (764)
Q Consensus 115 Gle~d~~~l~~~~~~~~~ia~~~---~~~p~~~g~~~~~ 150 (764)
|+..+++.+||.+|+.+...... ...-.++|..++.
T Consensus 78 gLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~ 116 (398)
T TIGR00210 78 GLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMAS 116 (398)
T ss_pred hhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999888875554442 2333345554443
No 105
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=76.57 E-value=15 Score=36.13 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=32.6
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeec
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAM 636 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~ 636 (764)
+|++.+.||.|+--++.++.+...+.+.+++++++.+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~ 38 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHG 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 57899999999999999999988776778888888543
No 106
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=75.55 E-value=10 Score=40.80 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=32.1
Q ss_pred eeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCC
Q 041687 598 ISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNH 638 (764)
Q Consensus 598 ~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~ 638 (764)
.++++.|.||+|+--.|.+|.+.-......+.++++-+...
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~ 68 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWK 68 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCC
Confidence 47899999999999999999876544356678888765543
No 107
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=73.33 E-value=52 Score=32.97 Aligned_cols=104 Identities=13% Similarity=0.207 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcc---CCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHH-------HHHHHH
Q 041687 45 VTILSAIFWLILRPL---GNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGII-------YMVFLL 114 (764)
Q Consensus 45 il~~~~l~~~ll~rl---~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli-------~~lF~~ 114 (764)
+=++-++.+++.||+ +++.----|+.|+++.-.+ |. ... -.+....+..++.+|++ |-.-..
T Consensus 21 vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~-~Tg------G~kGlaDi~lfsGiglmGGaMlRDfAIvaT 92 (254)
T TIGR00808 21 VGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GV-YTG------GEKGLADIAIFGGFGLMGGAMLRDLAIVAT 92 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-cc-ccC------CccccchhhhhcchhhhhhHHHHHHHHHHH
Confidence 334444555666665 5666666677777775321 11 100 01122233444444432 223355
Q ss_pred hhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041687 115 SVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAI 156 (764)
Q Consensus 115 Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~ 156 (764)
..|.|++++||.+.....-=+++.++||+.|..+++.+++..
T Consensus 93 Af~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~D 134 (254)
T TIGR00808 93 AFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRD 134 (254)
T ss_pred hhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 679999999999988777777899999999999999887654
No 108
>COG2855 Predicted membrane protein [Function unknown]
Probab=72.90 E-value=1.5e+02 Score=32.34 Aligned_cols=101 Identities=20% Similarity=0.196 Sum_probs=66.7
Q ss_pred hccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHH
Q 041687 57 RPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVG 136 (764)
Q Consensus 57 ~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~ 136 (764)
...++|..+--|+.|+++|.. ... .+... + .-.-.-+.+-++|++ +.|.+++++.+...+.+.+.+-..
T Consensus 33 ~~~~l~al~lAIllGi~l~~l-~~~-~~~~~----~-GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~~ 101 (334)
T COG2855 33 IHLGLSALTLAILLGILLGIL-PQI-PAQTS----A-GITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIAI 101 (334)
T ss_pred hhcCchHHHHHHHHHHHHhcc-ccc-hhhhc----c-chhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHHH
Confidence 456799999999999999932 221 11111 1 112234556677877 568899999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhh
Q 041687 137 SFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALEST 175 (764)
Q Consensus 137 ~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~ 175 (764)
.+...+++++.++.+++.. +..++++++--|+
T Consensus 102 ~l~~t~~~~~~lg~~lgld-------~~~a~Lia~GssI 133 (334)
T COG2855 102 TLSSTFLFAYFLGKLLGLD-------KKLALLIAAGSSI 133 (334)
T ss_pred HHHHHHHHHHHHHHHhCCC-------HHHHHHHHccchh
Confidence 7777777777766644322 2445555554444
No 109
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=72.61 E-value=14 Score=39.67 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=32.2
Q ss_pred eeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCC
Q 041687 598 ISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHT 639 (764)
Q Consensus 598 ~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~ 639 (764)
.+.++.|.||+|+--.|.++.+.-..-+..+.++++-+...+
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F 61 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKF 61 (294)
T ss_pred CCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCC
Confidence 356788999999999999998876543567888888655433
No 110
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=72.22 E-value=7.2 Score=44.35 Aligned_cols=124 Identities=11% Similarity=0.160 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCccEEEec---ccc---CC---ChhhHHHHHHhhhcCCcceEEEeecCCCCCCC---cccccCcceeEE
Q 041687 534 HDDICLMAFEKCTALVILP---FKR---AD---SPQIRTVTKNVIKLAPCSVGILYYRGLFMDPK---PIFSRQLTISVC 601 (764)
Q Consensus 534 ~~dI~~~A~e~~adlIIlp---~h~---s~---~~~~~~~n~~Vl~~ApCsVgIlvdrg~~~~~~---~~~~~~~~~~i~ 601 (764)
+++||++|+++++|||++| ||. |. ...++.+-+.-+-.-||..=++-|.+..-+.. .+--.+...||.
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIs 120 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNIS 120 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCccee
Confidence 6899999999999999999 666 22 45666677777888899999998887542121 110112234777
Q ss_pred Eeecc--CcchH-------HHHH------HHHHHhhCCC-eEEEEEEeeecCCCCCCC----cchhhhHHHHHHHHHh
Q 041687 602 VLFIG--GPDDR-------EALA------YGARMVENHS-IMLTIIRFIAMNHTTNDN----LIEESCDLNMINGFRM 659 (764)
Q Consensus 602 ~~f~g--G~ddr-------eAl~------~a~rma~~~~-v~ltvlr~~~~~~~~~~~----~~e~~~d~~~~~e~~~ 659 (764)
+|.++ |.||. -||. +...+-+.++ -+++|.-++-...+ ++ ..-...|+.+.+-|+.
T Consensus 121 IPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~~~id~I~vsPiLlqKG~--tklALYGLg~irDeRL~R~Fk~ 196 (646)
T KOG2310|consen 121 IPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKVSEIDKIDVSPILLQKGS--TKLALYGLGSIRDERLYRMFKN 196 (646)
T ss_pred eeeEEeecCCCCCccccccchHHHHHhcchhhhhccccCcceEEEEeeeeccCc--eeEEEeeccccchHHHHHHHHh
Confidence 77665 76552 2222 2233334443 34555555533211 11 1112357777777764
No 111
>COG2855 Predicted membrane protein [Function unknown]
Probab=71.28 E-value=29 Score=37.59 Aligned_cols=55 Identities=11% Similarity=0.294 Sum_probs=45.6
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHH
Q 041687 92 TPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATI 146 (764)
Q Consensus 92 p~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~ 146 (764)
|....+.+..++.+-++.=|.-.|++.|++.++|.+.|.+..++..++.-...++
T Consensus 273 P~~~~~~~~~lst~ll~~aMaAlGL~t~i~~l~~~G~kpl~la~~~~~~l~~~~l 327 (334)
T COG2855 273 PAEVVSALVTLSTFLLAMAMAALGLTTHIKALKKAGGKPLLLALLLWVFLVVGGL 327 (334)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 5556778899999999999999999999999999999999888876654444443
No 112
>PRK09903 putative transporter YfdV; Provisional
Probab=71.07 E-value=89 Score=33.75 Aligned_cols=109 Identities=6% Similarity=-0.016 Sum_probs=62.9
Q ss_pred cCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHHH-
Q 041687 59 LGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGS- 137 (764)
Q Consensus 59 l~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~- 137 (764)
++-|.+++.+ +|+++.- +|. . .|..-.+.++.+++...-+-||..|+.+....++.. ++.+...+.-
T Consensus 171 ~~nP~iia~~-~gl~~~l--~~i-~-------lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kl 238 (314)
T PRK09903 171 AKEPVVWAPV-LATILVL--VGV-K-------IPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKL 238 (314)
T ss_pred HhchHHHHHH-HHHHHHH--cCC-C-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHH
Confidence 4568777754 4565543 333 1 244457889999999999999999999877655433 3333333322
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhc
Q 041687 138 FVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDL 188 (764)
Q Consensus 138 ~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el 188 (764)
++.|++. +.....+ +.. ....-....++.+..++.+.++.+.
T Consensus 239 i~~P~i~-~~~~~~~-~l~-------~~~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 239 ILMPLAL-LLVGMAC-HLN-------SEHLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHHHHH-HHHHHHc-CCC-------cHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3456643 2222222 111 2233445556666666666776654
No 113
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=69.46 E-value=1.4e+02 Score=30.66 Aligned_cols=125 Identities=10% Similarity=0.092 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhccC----CChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccCh
Q 041687 45 VTILSAIFWLILRPLG----NHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDI 120 (764)
Q Consensus 45 il~~~~l~~~ll~rl~----~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~ 120 (764)
-++.-.+..++.||.+ .|-+++.++...+|=. +|. . +.++. ++.++++.+ +|-.-..|.+-+==+.
T Consensus 14 Tl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~--~~i-~--Y~~Y~---~g~~~i~~l--LgPAtVAlAvPLYkq~ 83 (230)
T COG1346 14 TLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLL--FGI-S--YEDYM---KGGQWINFL--LGPATVALAVPLYKQR 83 (230)
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH--cCC-C--HHHHh---cccHHHHHH--HHHHHHHHhhHHHHHH
Confidence 3333444555566665 4555555544444322 121 1 11111 345566665 4445555666776788
Q ss_pred hHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH-HHHhhhhHHHHHHHHhhcc
Q 041687 121 RIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVA-ALESTISIHVILALLSDLK 189 (764)
Q Consensus 121 ~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~-~~ls~Ts~~vv~~iL~elk 189 (764)
+.+||+++......+.+..+..+.+..++.+++... + +..+ .--|+|. |+...+=+++|
T Consensus 84 ~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~--------~-~~~Sl~PkSvTT-piAm~vs~~iG 143 (230)
T COG1346 84 HLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSP--------E-LILSLLPKSVTT-PIAMEVSESIG 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--------H-HHHHhccccccc-HHHHHHHHhcC
Confidence 899999988887777777777777777776665332 1 1111 1234453 66667666666
No 114
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=68.96 E-value=2.1e+02 Score=32.48 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcccccChhHHHHHHHHHHHhHHHHHHH
Q 041687 178 IHVILALLSDLKLLNSELGRLAVSSSLISSAVNCFAV 214 (764)
Q Consensus 178 ~~vv~~iL~elkll~s~~G~lals~a~i~D~~~~ill 214 (764)
+|++....+.+|+.+.+.=-.+++++.+.|..+..+-
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lp 153 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLP 153 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhcccc
Confidence 5888888889897655445678999999999888653
No 115
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=68.04 E-value=72 Score=35.44 Aligned_cols=95 Identities=14% Similarity=0.211 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHh--ccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccC
Q 041687 42 ITSVTILSAIFWLILR--PLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRID 119 (764)
Q Consensus 42 i~lil~~~~l~~~ll~--rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d 119 (764)
+.+.+.++..+...++ .+.+|.++.-+++|+++.... .... ... -..+.++.++++.+-+++..+=..++
T Consensus 226 i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~-~~~~---~~~----id~~~i~~I~~~sL~~fl~~almsl~ 297 (368)
T PF03616_consen 226 ILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNIL-DKTG---KYK----IDRKTIDRISGISLDLFLAMALMSLK 297 (368)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHH-HHhC---ccc----CCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444445555555555 367999999999999997532 2101 011 13667899999999999988888999
Q ss_pred hhHHHhccchhHHHHHHHHHHHHHH
Q 041687 120 IRIIQKSGRLAIVIGVGSFVLSMIA 144 (764)
Q Consensus 120 ~~~l~~~~~~~~~ia~~~~~~p~~~ 144 (764)
+..+.+..-..+.+-+++.++..+.
T Consensus 298 l~~l~~~a~Plliil~~q~i~~~~f 322 (368)
T PF03616_consen 298 LWVLADYALPLLIILAVQTILMVLF 322 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888766665555555555443
No 116
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=66.67 E-value=68 Score=34.88 Aligned_cols=102 Identities=9% Similarity=0.026 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCh--HHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhc
Q 041687 40 IPITSVTILSAIFWLILRPLGNHT--FVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVR 117 (764)
Q Consensus 40 lqi~lil~~~~l~~~ll~rl~~P~--iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle 117 (764)
.++.+++.++....++++|+|+|. ++|-++++.++.-. +. .+.-+ .. .+..++.+++=-.+|.+
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~--~~-----~~~~~----P~---~l~~~aqv~iG~~iG~~ 220 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLF--GG-----PSFSL----PP---WLVNAAQVLIGASIGSR 220 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--hC-----CCCCC----CH---HHHHHHHHHHHHHHHcc
Confidence 345666677888999999999875 44444444444322 11 00111 22 34455566666799999
Q ss_pred cChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041687 118 IDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAI 156 (764)
Q Consensus 118 ~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~ 156 (764)
+|.+.+++.. |.+..++...+.-+.++.+.++.+....
T Consensus 221 f~~~~l~~~~-~~~~~~l~~~~~~l~~~~~~a~~l~~~~ 258 (318)
T PF05145_consen 221 FTRETLRELR-RLLPPALLSTLLLLALCALFAWLLSRLT 258 (318)
T ss_pred ccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987655 4555555555555566666666665443
No 117
>COG0679 Predicted permeases [General function prediction only]
Probab=66.66 E-value=1.3e+02 Score=32.40 Aligned_cols=83 Identities=14% Similarity=0.255 Sum_probs=57.1
Q ss_pred cCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHH--
Q 041687 59 LGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVG-- 136 (764)
Q Consensus 59 l~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~-- 136 (764)
++.|.+++.+ .|+++....+. +|..-.+.++.+++...-+-|+..|+.++....++...+....+..
T Consensus 166 ~~nP~i~a~i-~g~~~~~~~i~----------lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~k 234 (311)
T COG0679 166 LTNPLIIALI-LGLLLNLLGIS----------LPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLK 234 (311)
T ss_pred HhCcHHHHHH-HHHHHHHcCCC----------CcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHH
Confidence 4678888764 45777643222 2444578899999999999999999999997777777777766666
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041687 137 SFVLSMIATILASSFVK 153 (764)
Q Consensus 137 ~~~~p~~~g~~~~~~l~ 153 (764)
-++.|++. ..+.+.++
T Consensus 235 ll~~Pl~~-~~~~~~~~ 250 (311)
T COG0679 235 LLLAPLVA-LLVAKLLG 250 (311)
T ss_pred HHHHHHHH-HHHHHHcC
Confidence 45556543 33444443
No 118
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=66.25 E-value=20 Score=37.77 Aligned_cols=111 Identities=21% Similarity=0.121 Sum_probs=62.5
Q ss_pred EeeccCcchHHHHHHHHHHhh-CCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEEeeecChhhH
Q 041687 602 VLFIGGPDDREALAYGARMVE-NHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYITRSIKDGAET 680 (764)
Q Consensus 602 ~~f~gG~ddreAl~~a~rma~-~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~~V~~g~~~ 680 (764)
++..=.|.|+-|++.|.|+.+ ..+.++|++.+=++. .++.+++.... +-++..-.+-.-..+.|+
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~------------a~~~lr~aLAm--GaDraili~d~~~~~~d~ 96 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ------------AEEALREALAM--GADRAILITDRAFAGADP 96 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecchh------------hHHHHHHHHhc--CCCeEEEEecccccCccH
Confidence 444457889999999999999 799999999986442 22334433222 333433322111223444
Q ss_pred HH---HHHhh--cCCccEEEEeccCC--CCchhhcccCCCCCCCccchhhhhh
Q 041687 681 AG---VLNAI--GDDFDLILVGRRHD--RHSQVLLGLSEWSEIEELGVVGDIL 726 (764)
Q Consensus 681 ~~---~i~~~--~~~~DLiiVGr~~~--~~s~~~~gl~~w~e~~eLG~iGd~l 726 (764)
.. +|.+. ..++|||+.|+... ...++=..+.+|-..|-++-+-++-
T Consensus 97 ~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~ 149 (260)
T COG2086 97 LATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIE 149 (260)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEE
Confidence 44 33332 23689999999862 2222223333444446555444443
No 119
>COG2431 Predicted membrane protein [Function unknown]
Probab=65.71 E-value=1.1e+02 Score=32.17 Aligned_cols=77 Identities=12% Similarity=0.260 Sum_probs=48.1
Q ss_pred hHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccC---hhHH-HhccchhHHHHHHHH
Q 041687 63 TFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRID---IRII-QKSGRLAIVIGVGSF 138 (764)
Q Consensus 63 ~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d---~~~l-~~~~~~~~~ia~~~~ 138 (764)
++.+..+.|+++|-..-.. ....+...+..+.+++|.+|.++. ...- ..-.|+....++...
T Consensus 108 k~~~~vl~g~~~G~l~~~~--------------~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~i 173 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSF--------------LNFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITL 173 (297)
T ss_pred HHHHHHHHHHHHHHHhccc--------------ccCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHH
Confidence 5667778888887432221 111456678899999999999887 2211 122377777777766
Q ss_pred HHHHHHHHHHHHHHh
Q 041687 139 VLSMIATILASSFVK 153 (764)
Q Consensus 139 ~~p~~~g~~~~~~l~ 153 (764)
+-..+-|...+.++.
T Consensus 174 lssliGG~iaa~~l~ 188 (297)
T COG2431 174 LSSLIGGLIAAFLLD 188 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666665555554443
No 120
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=64.26 E-value=38 Score=36.38 Aligned_cols=74 Identities=23% Similarity=0.383 Sum_probs=52.7
Q ss_pred HHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHH
Q 041687 66 SQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIAT 145 (764)
Q Consensus 66 ~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g 145 (764)
--++.|+++|. +++++.+.+-|.. .+-.-|+-|..|-.+|++.+.+.+-..+.+|+..+++.....
T Consensus 176 lP~iiG~iLGN-----LD~~~r~fl~~~~---------~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 176 LPIIIGMILGN-----LDPDFRKFLAPGV---------PILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred HHHHHHHHHhc-----CCHHHHHHHhcCC---------CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 34567888874 3777665554432 233468889999999999999999998888888777766666
Q ss_pred HHHHHHHh
Q 041687 146 ILASSFVK 153 (764)
Q Consensus 146 ~~~~~~l~ 153 (764)
+.+..++.
T Consensus 242 ~~~dr~i~ 249 (314)
T PF03812_consen 242 YLADRLIL 249 (314)
T ss_pred HHHHHHHc
Confidence 65555543
No 121
>COG2985 Predicted permease [General function prediction only]
Probab=63.83 E-value=32 Score=39.03 Aligned_cols=108 Identities=13% Similarity=0.094 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhH---HHhccchhHHHHHHHHH
Q 041687 63 TFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRI---IQKSGRLAIVIGVGSFV 139 (764)
Q Consensus 63 ~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~---l~~~~~~~~~ia~~~~~ 139 (764)
..-|.+++|++||- +|.+.|-++ ..| ......+.++|+++||=-+|++---+. +-..+-.....|.+-.+
T Consensus 397 ~aGGpLivaLiLG~--ig~iGpl~w--~mP---~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~ 469 (544)
T COG2985 397 NAGGPLIVALILGF--IGAIGPLTW--FMP---PGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTL 469 (544)
T ss_pred ccccHHHHHHHHHH--hcccCceEE--EcC---hhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHH
Confidence 45677888888884 455334322 223 446778899999887777777554333 33344444555566667
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHH
Q 041687 140 LSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILAL 184 (764)
Q Consensus 140 ~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~i 184 (764)
+|.+.+++++.++.+.. | ..++=+.+-+.|++|.++-.
T Consensus 470 vp~i~~~llg~~v~kmn------~-~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 470 VPVIIVFLLGRYVLKMN------W-LLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHHHHHHHHHHhcc------H-HHHhhHHhcCCCChHHHHHH
Confidence 78888888887776542 2 22334455688998876654
No 122
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=63.63 E-value=72 Score=34.48 Aligned_cols=148 Identities=15% Similarity=0.113 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHH----HhChhHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHHHHHHHHHHhcccccccce------
Q 041687 280 VNIMLLGCSLLAE----ITGLHGYFGAVILGINTPA-TPPMGASLVDKIESIIWAVFMPCFLINVGRRVNFFSV------ 348 (764)
Q Consensus 280 il~~~l~~~~~ae----~lG~~~~lGaf~~GL~lp~-~~p~~~~l~~kl~~~~~~~~lPiFF~~~Gl~~dl~~l------ 348 (764)
.+++..+..++++ ..++++.+=|.+.|+++.| .....+.+.+-++.. ...++.+=.+..|.++++..+
T Consensus 6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~G~~ 84 (305)
T PF03601_consen 6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILALGWK 84 (305)
T ss_pred HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHhCcc
Confidence 3333444444444 3577888889999999998 544555555555543 567888889999999998766
Q ss_pred -e--e------------eec-----cChhHHHHHHHHHhhhhHHHHHHHHhhhhcCCCChhHHH--HHHHHHHHHHHHHH
Q 041687 349 -G--L------------KTF-----LTVEDAVSLGLLLNCRGLYDVQIFSRAIQQQMITDESFA--IMVASSVLKSAIII 406 (764)
Q Consensus 349 -i--~------------ilg-----~~~~~a~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~f~--~lvl~~ll~t~i~~ 406 (764)
+ . .+| ++.+.+..+|...+.=|.-.++...-..+.+- ++..++ .+.+.-++..++.|
T Consensus 85 ~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~-~~~a~ava~V~lfg~vam~~~P 163 (305)
T PF03601_consen 85 GLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKE-EDVAYAVATVFLFGTVAMFLYP 163 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCC-CceeeeehHHHHHHHHHHHHHH
Confidence 0 0 011 88999999999888888777766554444331 111122 22222223344455
Q ss_pred HHHHHHhcchhhhhhhhcccccc
Q 041687 407 PLVRVVYDSSRRYVAYRRHTIQH 429 (764)
Q Consensus 407 plv~~l~~p~~~~~~~~~r~i~~ 429 (764)
.+.+++.-+...+-.+---+++.
T Consensus 164 ~l~~~l~l~~~~~G~w~G~sIh~ 186 (305)
T PF03601_consen 164 LLGHALGLSPQQFGAWAGGSIHD 186 (305)
T ss_pred HHHHHhCCCHHHHHHHhhhhhcc
Confidence 55666665555555554444443
No 123
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=63.60 E-value=18 Score=32.27 Aligned_cols=80 Identities=24% Similarity=0.299 Sum_probs=50.1
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEEeeecChh
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYITRSIKDGA 678 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~~V~~g~ 678 (764)
||+++=.||.+ =++|+++++.+.+. -+++.+.+. .+ .+ . .+ . ....++|-+
T Consensus 2 kVLviGsGgRE----HAia~~l~~s~~v~--~v~~aPGN~--G~---~~-~---------~~-----~---~~~~~~d~~ 52 (100)
T PF02844_consen 2 KVLVIGSGGRE----HAIAWKLSQSPSVE--EVYVAPGNP--GT---AE-L---------GK-----N---VPIDITDPE 52 (100)
T ss_dssp EEEEEESSHHH----HHHHHHHTTCTTEE--EEEEEE--T--TG---GG-T---------SE-----E---E-S-TT-HH
T ss_pred EEEEECCCHHH----HHHHHHHhcCCCCC--EEEEeCCCH--HH---Hh-h---------ce-----e---cCCCCCCHH
Confidence 67777666654 46789999999875 344443321 11 11 0 00 0 112456777
Q ss_pred hHHHHHHhhcCCccEEEEeccCCCCchhhcccCCC
Q 041687 679 ETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEW 713 (764)
Q Consensus 679 ~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w 713 (764)
++.++.++. +.||++||. +.|+..|+.|.
T Consensus 53 ~l~~~a~~~--~idlvvvGP----E~pL~~Gl~D~ 81 (100)
T PF02844_consen 53 ELADFAKEN--KIDLVVVGP----EAPLVAGLADA 81 (100)
T ss_dssp HHHHHHHHT--TESEEEESS----HHHHHTTHHHH
T ss_pred HHHHHHHHc--CCCEEEECC----hHHHHHHHHHH
Confidence 899999875 899999997 57999999775
No 124
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=63.56 E-value=31 Score=33.32 Aligned_cols=95 Identities=18% Similarity=0.116 Sum_probs=50.6
Q ss_pred CcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEEe-eec--ChhhHHHH
Q 041687 607 GPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYITR-SIK--DGAETAGV 683 (764)
Q Consensus 607 G~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~-~V~--~g~~~~~~ 683 (764)
.+.|+|+++.|+++++..+.+++++-+- +.. ...+. +++...++ ..+++...+- ... +.+....+
T Consensus 14 ~~~~~e~l~~A~~La~~~g~~v~av~~G-~~~---------~~~~~-l~~~l~~~-G~d~v~~~~~~~~~~~~~~~~a~~ 81 (164)
T PF01012_consen 14 NPVSLEALEAARRLAEALGGEVTAVVLG-PAE---------EAAEA-LRKALAKY-GADKVYHIDDPALAEYDPEAYADA 81 (164)
T ss_dssp -HHHHHHHHHHHHHHHCTTSEEEEEEEE-TCC---------CHHHH-HHHHHHST-TESEEEEEE-GGGTTC-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEe-cch---------hhHHH-Hhhhhhhc-CCcEEEEecCccccccCHHHHHHH
Confidence 4679999999999999999999998775 211 12222 23322211 2233443322 221 22334444
Q ss_pred HHhhc--CCccEEEEeccC--CCCchhhcccCCC
Q 041687 684 LNAIG--DDFDLILVGRRH--DRHSQVLLGLSEW 713 (764)
Q Consensus 684 i~~~~--~~~DLiiVGr~~--~~~s~~~~gl~~w 713 (764)
+.+.. .++|+|++|.+. +.-.+.++..-+|
T Consensus 82 l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~ 115 (164)
T PF01012_consen 82 LAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGA 115 (164)
T ss_dssp HHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-
T ss_pred HHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCC
Confidence 44432 369999999975 2234444444444
No 125
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=63.53 E-value=86 Score=34.41 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=66.5
Q ss_pred CCCCCCcchHHHHHH-HHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHH
Q 041687 27 GSEQPNFNIPNLIIP-ITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESL 105 (764)
Q Consensus 27 ~~~~l~~~lp~~llq-i~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~l 105 (764)
++.+-..++|....+ +.+.+.++.+.+.+.|++++|. +++++.++++-.+ +-. + .-+.+.=..+..+
T Consensus 174 ~~~~~~i~~~~~~~~~~~~l~~~~~~~g~l~~~lr~Pa--~~ll~~l~l~a~v----~~~-----~-~~~~~lP~wl~~v 241 (352)
T COG3180 174 GSGTPEIWLPPVDWLILLLLILAALLGGLLGKLLRFPA--PTLLGPLLLGAIV----HFG-----G-GITIQLPAWLLAV 241 (352)
T ss_pred CCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHh----hcc-----c-ceeeeCCHHHHHH
Confidence 344444455555555 6666777778888889999986 3334444443221 000 0 0011222334467
Q ss_pred HHHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041687 106 GIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAI 156 (764)
Q Consensus 106 Gli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~ 156 (764)
+..++--.+|.++|-..++...|-... ++.+.+.-+..+...++++....
T Consensus 242 a~~~iG~~IG~~f~~~~l~~~~r~~~~-~~v~ii~l~~~~~~~a~ll~~~~ 291 (352)
T COG3180 242 AQALIGALIGSRFDRSILREAKRLLPA-ILVSIIALMAIAAGMAGLLSWLT 291 (352)
T ss_pred HHHHHHHHHcccccHHHHHHhHhhcch-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 778888899999999988766554433 34444444444455555555443
No 126
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=62.99 E-value=1.9e+02 Score=31.76 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=58.0
Q ss_pred ChhHHHHHHHHHHhcCCCCCChhHHHHHHHHH---HHHHHHHHHHHHhccc-ccccce--------ee------------
Q 041687 295 GLHGYFGAVILGINTPATPPMGASLVDKIESI---IWAVFMPCFLINVGRR-VNFFSV--------GL------------ 350 (764)
Q Consensus 295 G~~~~lGaf~~GL~lp~~~p~~~~l~~kl~~~---~~~~~lPiFF~~~Gl~-~dl~~l--------i~------------ 350 (764)
++|+..-..++|.++....=..+.++++-..+ ...-+.+..++-+|+. +|+..+ ++
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 56777777788877766554556666655433 2333333444445665 676554 00
Q ss_pred --eec-----cChhHHHHHHHHHhhhh-HHHHHHHHhhhhcCCCC
Q 041687 351 --KTF-----LTVEDAVSLGLLLNCRG-LYDVQIFSRAIQQQMIT 387 (764)
Q Consensus 351 --ilg-----~~~~~a~~lg~~m~~kG-~~~l~~~~~~~~~~~i~ 387 (764)
++| +|...++.-|+.|+.+| .=|+++++.+.+..++.
T Consensus 283 s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 283 GAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 011 78889999998886654 45777777777777765
No 127
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=60.90 E-value=70 Score=31.13 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=31.7
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCC--CeEEEEEEeeec
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENH--SIMLTIIRFIAM 636 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~--~v~ltvlr~~~~ 636 (764)
||++.+.||.|.--.+.++.+..++. +.+++.+++...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 58999999999999999998887654 778888888644
No 128
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=58.93 E-value=2e+02 Score=34.02 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHh
Q 041687 240 MFLSLTFIVVLIVFGLRPTMFWMMRK 265 (764)
Q Consensus 240 ~~~~~~~~~~~~~~v~r~~~~~i~~~ 265 (764)
.+++.+.-+...+++.|+++.|+.++
T Consensus 571 L~iGIl~S~ftAi~vtr~l~~~~~~~ 596 (604)
T PRK12933 571 LGLGLLTSMFTGIFASRALINLVYGR 596 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444445667778888777655
No 129
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=58.58 E-value=23 Score=38.23 Aligned_cols=42 Identities=10% Similarity=0.050 Sum_probs=32.4
Q ss_pred eeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCC
Q 041687 598 ISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHT 639 (764)
Q Consensus 598 ~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~ 639 (764)
.++++.|.||+|+--.|.++.+........+.++++-+..+|
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~F 79 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKF 79 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCC
Confidence 467899999999999999998886544456778888655444
No 130
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=58.12 E-value=90 Score=33.48 Aligned_cols=74 Identities=27% Similarity=0.477 Sum_probs=52.8
Q ss_pred HHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHH
Q 041687 66 SQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIAT 145 (764)
Q Consensus 66 ~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g 145 (764)
--++.|+++|. +++++.+.+-|.. ..-..|+-|..|-.+|++.+.+.+-..+.+|+...++.....
T Consensus 176 lPlliG~ilGN-----LD~~~r~fl~~~~---------~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~ 241 (314)
T TIGR00793 176 LPFLVGFALGN-----LDPELRDFFSKAV---------QTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPL 241 (314)
T ss_pred HHHHHHHHHhc-----CCHHHHHHhccCC---------CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 34567777774 3776665554422 223458899999999999999999888888887777777666
Q ss_pred HHHHHHHh
Q 041687 146 ILASSFVK 153 (764)
Q Consensus 146 ~~~~~~l~ 153 (764)
+....++.
T Consensus 242 ~~~dr~~~ 249 (314)
T TIGR00793 242 ILADKFIG 249 (314)
T ss_pred HHHHHHhc
Confidence 66666554
No 131
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=57.44 E-value=4.3 Score=45.07 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHH-HHHHHHHHHHHhh
Q 041687 38 LIIPITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFE-SLGIIYMVFLLSV 116 (764)
Q Consensus 38 ~llqi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la-~lGli~~lF~~Gl 116 (764)
-..+...++.+......+.+.+|.+.+++-.++|++++..-. .++ -.+.++.+. .+-..++....|+
T Consensus 211 ~~~~~~~~l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~~~~---~~~---------~~~~l~~~~~~~~~~lfF~~iG~ 278 (380)
T PF00999_consen 211 SEIFILLVLALILLLYGLAEILGLSGILGAFIAGLILSNSPF---AER---------LEEKLESFWYGFFIPLFFVFIGM 278 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHhhhccccccccccccceeeeeehccccccc---cch---------hhhcccchhhHHHhhHHhhhhcc
Confidence 344455556666666888889999999999999999982211 111 122344455 6667778889999
Q ss_pred ccChhHHH
Q 041687 117 RIDIRIIQ 124 (764)
Q Consensus 117 e~d~~~l~ 124 (764)
++|++.+.
T Consensus 279 ~~~~~~l~ 286 (380)
T PF00999_consen 279 SLDFSSLF 286 (380)
T ss_dssp --------
T ss_pred cccccccc
Confidence 99998884
No 132
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=56.94 E-value=1.2e+02 Score=33.43 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=53.5
Q ss_pred HHhcc-CCChHHHHHHHHHhhchhccccccccccccccCccchhHHH-HHHHHHHHHHHHHHhhc-cChhHHHhcc-chh
Q 041687 55 ILRPL-GNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLN-VFESLGIIYMVFLLSVR-IDIRIIQKSG-RLA 130 (764)
Q Consensus 55 ll~rl-~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~-~la~lGli~~lF~~Gle-~d~~~l~~~~-~~~ 130 (764)
+++.+ ++|..+-.++.|+++-- +|.+.++.. +....+. ++..--...+++-+|+. .|++++.+.. ...
T Consensus 197 l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~------~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~ 268 (347)
T TIGR00783 197 LLKSFPGIPAYAFMILIAAALKA--FGLVPKEIE------EGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQF 268 (347)
T ss_pred HHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHH------HHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhH
Confidence 34433 68999999999999873 555322111 1111222 22222233344457885 8999998877 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 041687 131 IVIGVGSFVLSMIATILASSFVKGA 155 (764)
Q Consensus 131 ~~ia~~~~~~p~~~g~~~~~~l~~~ 155 (764)
+.+.+.+++.-.+.+++++.+++.+
T Consensus 269 vviiv~~Vlg~ii~s~lvGKllG~Y 293 (347)
T TIGR00783 269 VVICLSVVVAMILGGAFLGKLMGMY 293 (347)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 4554555554455556677777554
No 133
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=53.33 E-value=35 Score=36.95 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=42.0
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCe-EEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhc
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSI-MLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMT 660 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v-~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~ 660 (764)
..+||+-|.||+|.-.-|.++.+.|+..+- ++.|+++=- |.+....-++++|.+..
T Consensus 27 f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~--------E~QYs~TidyV~em~~~ 83 (407)
T COG3969 27 FPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDW--------EAQYSCTIDYVQEMRES 83 (407)
T ss_pred CCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcc--------hhhhhhHHHHHHHHHhc
Confidence 569999999999999999999999977664 788887621 12333455667777654
No 134
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=52.98 E-value=88 Score=34.37 Aligned_cols=163 Identities=12% Similarity=0.006 Sum_probs=0.0
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhChhH-HHHHHHHHHhcCCCCCC---------------------------hhHH
Q 041687 268 GGKSPKRGHLWFVNIMLLGCSLLAEITGLHG-YFGAVILGINTPATPPM---------------------------GASL 319 (764)
Q Consensus 268 ~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~-~lGaf~~GL~lp~~~p~---------------------------~~~l 319 (764)
+.++.-.+.-.+.+++.+..-|++-.=++++ .+=+.-+|.++.|-|-. +.-+
T Consensus 15 ~~~~~~~~~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L 94 (399)
T TIGR03136 15 VQEPVIAITRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFL 94 (399)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHH
Q ss_pred HHHHH-HHHHHHHHHHHHHHhcccccccce-----eeee-c------------------cChhHHHHHHHHHhhhhHHHH
Q 041687 320 VDKIE-SIIWAVFMPCFLINVGRRVNFFSV-----GLKT-F------------------LTVEDAVSLGLLLNCRGLYDV 374 (764)
Q Consensus 320 ~~kl~-~~~~~~~lPiFF~~~Gl~~dl~~l-----i~il-g------------------~~~~~a~~lg~~m~~kG~~~l 374 (764)
..-++ .+.++++=|+-|.-+|.-+|++-+ ..++ | ++.+|+..+|.+=..-|-..+
T Consensus 95 ~~~~~~gi~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~t~~~A~~lGF~~~eAAsIgIIGgADGPTaI 174 (399)
T TIGR03136 95 QPVYNFTFSNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFATLVIGYYCGLTPGEAAAVGTIGGADGPMVL 174 (399)
T ss_pred HHHHHHHHhcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHHHHHHHHHcCCCHHHhhHHhhcccCCccHHH
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHh-cchhhhhhh-hccccccCCC
Q 041687 375 QIFSRAIQQQMITDESFAIMVASSVLKSAIIIPLVRVVY-DSSRRYVAY-RRHTIQHNGR 432 (764)
Q Consensus 375 ~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~plv~~l~-~p~~~~~~~-~~r~i~~~~~ 432 (764)
.+.+. +.-.++.+-.-.+-.-++++ =.+.||++|.+- |.+|+..-+ +.|.+.+..+
T Consensus 175 f~s~k-LAp~Llg~IaVAAYsYMaLV-PiiqPpimklLttkkER~I~M~~~~r~VSk~eK 232 (399)
T TIGR03136 175 FASLI-LAKDLFVPISIIAYLYLSLT-YAGYPYLIKLLVPKKYRGLEVEMEFPDVSQRAK 232 (399)
T ss_pred HHHHh-hhhHhHHHHHHHHHHHHHHH-hcccchHHHhhcCHHHHcccCccCCCCCCccch
No 135
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=51.33 E-value=1.1e+02 Score=34.76 Aligned_cols=58 Identities=17% Similarity=0.112 Sum_probs=42.1
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHh-hCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhc
Q 041687 597 TISVCVLFIGGPDDREALAYGARMV-ENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMT 660 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma-~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~ 660 (764)
..+|++.+.||+|.--.|.+..++. ..++.+++++++...-.. +.+.++++++++..+
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~------~s~~~~~~~~~~~~~ 73 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP------NADSWVKHCEQVCQQ 73 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc------chHHHHHHHHHHHHH
Confidence 3689999999999988888777776 456889999999744221 222445777777655
No 136
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=49.58 E-value=1e+02 Score=33.38 Aligned_cols=46 Identities=7% Similarity=0.116 Sum_probs=28.9
Q ss_pred HHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHH---HHHHHHHHHh
Q 041687 107 IIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMI---ATILASSFVK 153 (764)
Q Consensus 107 li~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~---~g~~~~~~l~ 153 (764)
+.+||-..|++- -++++.-+|..+.+-.++++.|.+ +|..++++++
T Consensus 213 L~lFLLeMGl~A-~~rL~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~~~g 261 (327)
T PF05982_consen 213 LCLFLLEMGLVA-ARRLRDLRKVGWFLIAFGILMPLINALIGIGLGWLLG 261 (327)
T ss_pred HHHHHHHhhHHH-HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567777888854 344555555566666778888876 4445554443
No 137
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=48.71 E-value=1.1e+02 Score=28.98 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=26.9
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeec
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAM 636 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~ 636 (764)
++++.|.||+|.--.+.++.+...+. -++.++.+.+.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCC
Confidence 57899999999988888887765432 35666666543
No 138
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=48.24 E-value=1.2e+02 Score=32.26 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=40.9
Q ss_pred eeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhc
Q 041687 598 ISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMT 660 (764)
Q Consensus 598 ~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~ 660 (764)
++|++.+.||+|.--+|.+..++.++ .++.+++|...-.. +.+.+.+..+++...
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~------~~~~~~~~~~~~~~~ 76 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRG------YSDQEAELVEKLCEK 76 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCC------ccchHHHHHHHHHHH
Confidence 69999999999999999999999888 89999998744221 112444555555544
No 139
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=48.08 E-value=2.5e+02 Score=31.89 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=21.2
Q ss_pred ChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 041687 119 DIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVK 153 (764)
Q Consensus 119 d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~ 153 (764)
|.+.+.|.+.|.+..-+....+..++|..++.++.
T Consensus 66 ~~~~lg~i~~~~~~~f~~tt~iA~~lgl~~~~l~~ 100 (428)
T PRK01663 66 DMKKVGRVGGKALLYFEIVSTIALIIGLIVVNVVQ 100 (428)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66666666666655545555555666666665554
No 140
>TIGR00930 2a30 K-Cl cotransporter.
Probab=47.35 E-value=7e+02 Score=31.61 Aligned_cols=128 Identities=9% Similarity=0.044 Sum_probs=75.4
Q ss_pred cCCCCccceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHH
Q 041687 429 HNGRNSELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINAL 508 (764)
Q Consensus 429 ~~~~~~e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 508 (764)
.+..+-..++|+.+.+|++.+.+++++..+. +... -..+.|+++-+.+.. . .+.++..++.
T Consensus 569 ~h~knwrPqiLvl~~~p~~~~~Ll~f~~~l~-~~~g-l~i~~~v~~~~~~~~-----~------------~~~~~~~~~~ 629 (953)
T TIGR00930 569 DHVKNWRPQCLVLTGPPVCRPALLDFASQFT-KGKG-LMICGSVIQGPRLEC-----V------------KEAQAAEAKI 629 (953)
T ss_pred CCccccCCeEEEEeCCCcCcHHHHHHHHHhc-cCCc-EEEEEEEecCchhhh-----H------------HHHHHHHHHH
Confidence 3445666789999999999999999999994 4444 445568877432111 0 0112222333
Q ss_pred HHHhHhcCCCeEEEEEEEeccCCChHHHHHHHHHhc-----CccEEEeccccC----C---ChhhHHHHHHhhhcCCcce
Q 041687 509 RRYKHYQKGLKSVHCFTAVAPFASMHDDICLMAFEK-----CTALVILPFKRA----D---SPQIRTVTKNVIKLAPCSV 576 (764)
Q Consensus 509 ~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~-----~adlIIlp~h~s----~---~~~~~~~n~~Vl~~ApCsV 576 (764)
+.+-+. .+ ++.|..+-.-+++.+++..+.+-- +.+.++|||... + ...+-++.+.. -++...|
T Consensus 630 ~~~~~~--~~--~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~y~~~i~~a-~~~~~~v 704 (953)
T TIGR00930 630 QTWLEK--NK--VKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPRAWETYIGIIHDA-FDAHLAV 704 (953)
T ss_pred HHHHHH--hC--CCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccchhHHHHHHHHHHH-HHcCCcE
Confidence 333222 12 233333333479999999998764 679999999761 1 11233333333 3556666
Q ss_pred EEEe
Q 041687 577 GILY 580 (764)
Q Consensus 577 gIlv 580 (764)
.|+.
T Consensus 705 ~i~r 708 (953)
T TIGR00930 705 VVVR 708 (953)
T ss_pred EEEc
Confidence 6654
No 141
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=47.23 E-value=2.7e+02 Score=30.47 Aligned_cols=46 Identities=28% Similarity=0.460 Sum_probs=36.3
Q ss_pred HHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 041687 107 IIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFV 152 (764)
Q Consensus 107 li~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l 152 (764)
+-+..|..|..+|++.+.+.+.....+++..++++...++....++
T Consensus 205 Lp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~ 250 (326)
T PRK05274 205 IPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLI 250 (326)
T ss_pred HHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhhee
Confidence 3456677999999999999999998888887777777666666555
No 142
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=46.65 E-value=1e+02 Score=34.68 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=63.1
Q ss_pred hhhHHHHHHhhhcCCcceEEEeecCCCCCCCcccccCcceeEEEeeccCcchHHHHHHHHHHh-hCCCeEEEEEEeeecC
Q 041687 559 PQIRTVTKNVIKLAPCSVGILYYRGLFMDPKPIFSRQLTISVCVLFIGGPDDREALAYGARMV-ENHSIMLTIIRFIAMN 637 (764)
Q Consensus 559 ~~~~~~n~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~i~~~f~gG~ddreAl~~a~rma-~~~~v~ltvlr~~~~~ 637 (764)
...-+++++|+--+| -+..+-.. .....-+||+.|.||-|.---..++.+.+ .|+.+.|-=+-|-.|+
T Consensus 223 ~l~ds~k~rvl~i~~----rl~~~i~~-------~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e 291 (520)
T KOG0573|consen 223 GLRDSLKDRVLVIPP----RLCANILL-------RCIHESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPE 291 (520)
T ss_pred HHHHHHhhhhhccCh----hHhhhccc-------cccccCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCC
Confidence 345677888877776 11111000 01113489999999999998888888876 4555554444443332
Q ss_pred CCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEEeeec
Q 041687 638 HTTNDNLIEESCDLNMINGFRMTCINNSNVEYITRSIK 675 (764)
Q Consensus 638 ~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~~V~ 675 (764)
.....+.++++....-++|++..+. +....+.|..|.
T Consensus 292 ~~~~~~~PDRktgr~g~~eL~s~~P-~R~~nlV~vnV~ 328 (520)
T KOG0573|consen 292 GSKEQNVPDRKTGRRGLEELQSLYP-KRSWNLVEVNVT 328 (520)
T ss_pred cccccCCccHHHHHHHHHHHHHhCC-cceEEEEeccCC
Confidence 2222233677777888888887533 234566777764
No 143
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=45.48 E-value=2.4e+02 Score=31.45 Aligned_cols=95 Identities=11% Similarity=0.164 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc--cCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhh
Q 041687 39 IIPITSVTILSAIFWLILRP--LGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSV 116 (764)
Q Consensus 39 llqi~lil~~~~l~~~ll~r--l~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gl 116 (764)
+.-+++.+.++..+..+++. +.+|.+++-+.+|+++.... +.... +.-..+..+.+++.++-+++=.+=+
T Consensus 224 ~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~-----~~~~~---~~v~~~~v~~ig~vsL~lflamALm 295 (404)
T COG0786 224 LAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNIL-----DLLKK---YRVFRRAVDVIGNVSLSLFLAMALM 295 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHH-----HHhcc---ccccHHHHHHHhhhHHHHHHHHHHH
Confidence 33344555566666666664 56999999999999997532 11111 1113667889999999988877766
Q ss_pred ccChhHHHhccchhHHHHHHHHHHH
Q 041687 117 RIDIRIIQKSGRLAIVIGVGSFVLS 141 (764)
Q Consensus 117 e~d~~~l~~~~~~~~~ia~~~~~~p 141 (764)
.+.+-.+-..+-..+.+=.++.++.
T Consensus 296 SlkLweL~~l~lpl~viL~vQ~i~m 320 (404)
T COG0786 296 SLKLWELADLALPLLVILAVQTIVM 320 (404)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHH
Confidence 7777777666555544444444333
No 144
>COG3633 SstT Na+/serine symporter [Amino acid transport and metabolism]
Probab=44.11 E-value=2.4e+02 Score=30.10 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=21.4
Q ss_pred HHHhccCCChHHHHHHHHHhhchhccccccc
Q 041687 54 LILRPLGNHTFVSQMLAGILMGPSFLERVNE 84 (764)
Q Consensus 54 ~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~ 84 (764)
.+++++..-..+-||+.|+++|- .++.+.|
T Consensus 6 ~l~~~~~~gsLv~qI~iGlvlGi-~~a~~s~ 35 (407)
T COG3633 6 KLFRLLARGSLVKQILIGLVLGI-LLAIISP 35 (407)
T ss_pred HHHHHHHhccHHHHHHHHHHHHH-HHHhcCh
Confidence 34556667788999999999995 3555443
No 145
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=43.26 E-value=7.3e+02 Score=30.64 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHh-cCCCCCCCch
Q 041687 244 LTFIVVLIVFGLRPTMFWMMRK-TPGGKSPKRG 275 (764)
Q Consensus 244 ~~~~~~~~~~v~r~~~~~i~~~-~~~~~~~~e~ 275 (764)
.+++.++++++.||...|+... .+...+.+|.
T Consensus 329 ~ilLaL~LifVrRPpaVlll~~li~~~~s~rEr 361 (810)
T TIGR00844 329 LIILSLVVIFLRRIPAVLILKPLIPDIKSWREA 361 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHH
Confidence 3445566678889877766533 3333334443
No 146
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=41.83 E-value=41 Score=36.45 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=19.3
Q ss_pred hhhHHHHHHhhc-----CCccEEEEeccCCC
Q 041687 677 GAETAGVLNAIG-----DDFDLILVGRRHDR 702 (764)
Q Consensus 677 g~~~~~~i~~~~-----~~~DLiiVGr~~~~ 702 (764)
..+++++|+... .+||++|++|++|.
T Consensus 57 ~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 57 AASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 345666766664 25999999999985
No 147
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=38.14 E-value=8e+02 Score=29.67 Aligned_cols=138 Identities=12% Similarity=0.181 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHhcchhhhhhh---hccccccCCCCccceeEEEeeCCCChHHHHHHHHhcCCC
Q 041687 391 FAIMVASSVLKSAIIIPLV------RVVYDSSRRYVAY---RRHTIQHNGRNSELRILACINDPDNVATILNIIQTSNSP 461 (764)
Q Consensus 391 f~~lvl~~ll~t~i~~plv------~~l~~p~~~~~~~---~~r~i~~~~~~~e~rILvcv~~~e~~~~li~l~~~~~~~ 461 (764)
|-+|.+.+++.....||.- ..+|+.-|||.-- +|..+..- .-+||.-|+||+..-+++++...+.
T Consensus 511 ~l~~~iLv~~lh~~~pp~swG~VSQaLiyHQVRKYLL~ld~rkdhVKfW----RPQILLlV~nPrss~~Lirf~N~LK-- 584 (945)
T KOG1288|consen 511 FLLMGILVVVLHYFSPPKSWGDVSQALIYHQVRKYLLRLDVRKDHVKFW----RPQILLLVSNPRSSCNLIRFCNDLK-- 584 (945)
T ss_pred HHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHhcchhhhhcccc----cceEEEEecCCcccchHHHHHHhhc--
Confidence 3333333333344455432 4567777777432 22233222 3469999999999999999999983
Q ss_pred CCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHhcCCCeEEEEEEEeccCCChHHHHHHHH
Q 041687 462 QSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHYQKGLKSVHCFTAVAPFASMHDDICLMA 541 (764)
Q Consensus 462 ~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A 541 (764)
++. +|++--|.+.+..+... .+. ....+.--.|..+ ..+..|+.+.--.+.-++|-++-
T Consensus 585 Kgg--LYilGHV~~gd~~~~~~--d~l----------~~q~~~W~s~vd~-------~~iKAFvelt~spsir~Giq~Li 643 (945)
T KOG1288|consen 585 KGG--LYILGHVIVGDDFSASM--DEL----------QQQQRAWLSFVDD-------AGIKAFVELTISPSIRWGIQHLI 643 (945)
T ss_pred ccc--eEEEEEEEecccccccc--chh----------hHHHHHHHHHHHH-------hhhhhheeeccChhHHHHHHHHh
Confidence 444 57776666554332110 000 0111111222222 22344444433356667776665
Q ss_pred Hh-----cCccEEEecccc
Q 041687 542 FE-----KCTALVILPFKR 555 (764)
Q Consensus 542 ~e-----~~adlIIlp~h~ 555 (764)
.- -+.+.+|+|||.
T Consensus 644 r~SGLGgMKPNt~VlgF~d 662 (945)
T KOG1288|consen 644 RLSGLGGMKPNTAVLGFYD 662 (945)
T ss_pred hhcccCCcCCceEEEEeec
Confidence 43 467889999987
No 148
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=38.12 E-value=48 Score=37.37 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhcccCCCcEEEEEeee--cChhhHHHHHHhhc--CCccEEEEeccCCC
Q 041687 649 CDLNMINGFRMTCINNSNVEYITRSI--KDGAETAGVLNAIG--DDFDLILVGRRHDR 702 (764)
Q Consensus 649 ~d~~~~~e~~~~~~~~~~v~y~e~~V--~~g~~~~~~i~~~~--~~~DLiiVGr~~~~ 702 (764)
.-.+.+...+.+...-+.+.|.-.+= +.+.|++++|+... +++|.+||||++|.
T Consensus 148 airDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 148 ALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred HHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 34556666666644334445533321 23578888888774 44999999999974
No 149
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=37.45 E-value=7.4e+02 Score=32.26 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHh
Q 041687 240 MFLSLTFIVVLIVFGLRPTMFWMMRK 265 (764)
Q Consensus 240 ~~~~~~~~~~~~~~v~r~~~~~i~~~ 265 (764)
.+++.+.-++..+++.|+++.++.++
T Consensus 1039 LiIGII~SmftALfVtP~Ll~l~l~~ 1064 (1403)
T PRK12911 1039 LIIGIFSSMFTALFMTKFFFMIWMNK 1064 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444445567777777666654
No 150
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=37.02 E-value=1.9e+02 Score=31.61 Aligned_cols=92 Identities=12% Similarity=0.166 Sum_probs=54.8
Q ss_pred HHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEE-EEEeee-cChhhHHHHHHhhcC-
Q 041687 613 ALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVE-YITRSI-KDGAETAGVLNAIGD- 689 (764)
Q Consensus 613 Al~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~-y~e~~V-~~g~~~~~~i~~~~~- 689 (764)
|....+|+-+..+ .--..+|+++... .-+..+..+..++ ++. |.|..- +.-+||..++|+|.+
T Consensus 34 a~~~v~rfL~~l~-~~~~~~flt~p~~---------mG~~~~~~~~~~~----~v~~~~~~~~~tTa~DT~~~~r~~~~~ 99 (355)
T COG3199 34 AIVRVKRFLKKLD-ANGDVEFLTPPGP---------MGESLAEASGFKY----RVIRFQESTPRTTAEDTINAVRRMVER 99 (355)
T ss_pred HHHHHHHHHHhcc-ccCceEEEeCCcc---------cchhHHHhhcCcc----eEEeecccCCCccHHHHHHHHHHHHhc
Confidence 4555777777776 2234666666443 2233344444331 244 877775 567899999999976
Q ss_pred CccEEEEeccCCCCchhhcccCCCCCCCccc
Q 041687 690 DFDLILVGRRHDRHSQVLLGLSEWSEIEELG 720 (764)
Q Consensus 690 ~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG 720 (764)
+.||+++--+.|-..-..++. =.+-|-||
T Consensus 100 gVdlIvfaGGDGTarDVa~av--~~~vPvLG 128 (355)
T COG3199 100 GVDLIVFAGGDGTARDVAEAV--GADVPVLG 128 (355)
T ss_pred CceEEEEeCCCccHHHHHhhc--cCCCceEe
Confidence 799998866655444444443 22355555
No 151
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=36.44 E-value=5.5e+02 Score=28.20 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=43.5
Q ss_pred HHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccChhHHH
Q 041687 53 WLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDIRIIQ 124 (764)
Q Consensus 53 ~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~~~l~ 124 (764)
..+.+.+..|.+++-+ .|++++-.... ...++|.--.+.++.+++...-+-||..|..+.....+
T Consensus 236 ~~~~~~~~nP~~~a~~-lgli~~~~~~~------~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~ 300 (385)
T PF03547_consen 236 KSILKLFKNPPLIAII-LGLIIGLIPPL------RPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRK 300 (385)
T ss_pred HHHHHHHhCcHHHHHH-HHHHHHHHHHh------cccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcc
Confidence 3345567788888854 56888743211 12233333467899999999999999999988765433
No 152
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=35.25 E-value=6.1e+02 Score=27.48 Aligned_cols=56 Identities=4% Similarity=0.094 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 041687 101 VFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQ 157 (764)
Q Consensus 101 ~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~ 157 (764)
.+.+.|.+.+=-.+|..++++.+.+.......+ ....+..+.++.+.++++.+..+
T Consensus 25 ~~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~r~~~ 80 (318)
T PF05145_consen 25 RLRNAGQAILGVSIGSSFTPEVLAQLASWWPPM-LLLLVVTLLLSLVGAWLLRRISG 80 (318)
T ss_pred HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcC
Confidence 345667777777899999999988776544433 33344455566666666665543
No 153
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=35.15 E-value=1.4e+02 Score=29.11 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=27.8
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeec
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAM 636 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~ 636 (764)
++++.|.||.|.--++.++.+- +.+++.++|..+
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~----g~~v~av~~d~g 34 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR----GIEVDALHFNSG 34 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc----CCeEEEEEEeCC
Confidence 4789999999999999888762 677888888754
No 154
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=35.10 E-value=6.8e+02 Score=27.94 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=16.1
Q ss_pred HHHHHHhccCCChHHHHHHHHHhh
Q 041687 51 IFWLILRPLGNHTFVSQMLAGILM 74 (764)
Q Consensus 51 l~~~ll~rl~~P~iv~~ilaGiil 74 (764)
+..++.++.++|.-+.-+++.+++
T Consensus 10 i~l~~~~~~~i~~~~~al~~~~ll 33 (416)
T cd01118 10 LVLVIWRPFGLPEAVWAVLGAVIA 33 (416)
T ss_pred HHHHHHccCCCChHHHHHHHHHHH
Confidence 444666666788877777766665
No 155
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=34.65 E-value=2.5e+02 Score=33.17 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhcc
Q 041687 41 PITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRI 118 (764)
Q Consensus 41 qi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~ 118 (764)
+..++++++.+.+.+.+.++...+++-+.+|+.+|...-..+.+... .......+.++.+.-.++..+.|+++
T Consensus 239 e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~-----~~~~~f~~~ls~l~e~~IFvlLGl~l 311 (559)
T TIGR00840 239 EPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQ-----TTIKYFMKMLSSLSETLIFIFLGVSL 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666677777888888999999999998654322121100 01234677778777778888888876
No 156
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=33.74 E-value=5.6e+02 Score=26.55 Aligned_cols=129 Identities=12% Similarity=0.106 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHhcc-CC----ChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhh
Q 041687 42 ITSVTILSAIFWLILRPL-GN----HTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSV 116 (764)
Q Consensus 42 i~lil~~~~l~~~ll~rl-~~----P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gl 116 (764)
+.+.+++-.+..++.||. +- |-+++-++.-.++- .+|. . +.++ .++.+++..+ +|-.-..|-.-+
T Consensus 13 l~lTl~~y~~~~~l~~r~~~~~~lnPll~s~~~ii~~L~--~~~i-~--Y~~Y---~~g~~~l~~l--LgPAtVALAvPL 82 (232)
T PRK04288 13 ILVSLIAFGIGTILFKKSKGFFLFTPLFVAMVLGIAFLK--LTGI-S--YEEY---NIGGDIISFF--LEPATIAFAIPL 82 (232)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHH--HhCC-C--HHHH---HhhhHHHHHH--HHHHHHHHHHHH
Confidence 444555556666777777 43 33333332222221 1222 1 1111 1234555554 444445555556
Q ss_pred ccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcc
Q 041687 117 RIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLK 189 (764)
Q Consensus 117 e~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elk 189 (764)
=-+.+.+||+++....--+.|.++.++.+..++.+++... +...=-..-|+| .|+...+-+++|
T Consensus 83 Y~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~--------~~~~Sl~pKSVT-tPIAm~is~~iG 146 (232)
T PRK04288 83 YKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDN--------AVMASMLPQAAT-TAIALPVSAGIG 146 (232)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--------HHHHHHhhHhhh-HHHHHHHHHHhC
Confidence 5678888888877766666677777766666666664321 111111233455 377777766665
No 157
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=33.57 E-value=6.8e+02 Score=29.67 Aligned_cols=142 Identities=20% Similarity=0.260 Sum_probs=85.2
Q ss_pred eccCCChHHHHHHHHHhcCc-cEEEeccccCCChhhHHHHHHhhhcCCcceEEEeecCCCCCCCc------ccc-----c
Q 041687 527 VAPFASMHDDICLMAFEKCT-ALVILPFKRADSPQIRTVTKNVIKLAPCSVGILYYRGLFMDPKP------IFS-----R 594 (764)
Q Consensus 527 vs~~~~m~~dI~~~A~e~~a-dlIIlp~h~s~~~~~~~~n~~Vl~~ApCsVgIlvdrg~~~~~~~------~~~-----~ 594 (764)
|.....=|+++.+++-=... +++||-- +++..+|....--+.+--+|++|=..||...+... ... .
T Consensus 421 vG~DG~TH~G~fDls~l~~iPnmvi~aP--~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~~~~~~~~Gk~~i~ 498 (627)
T COG1154 421 VGADGPTHQGLFDLSFLRCIPNMVIMAP--RDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILTPELEPLEIGKGELL 498 (627)
T ss_pred cCCCCCccccHHHHHHHhcCCCcEEecC--CCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcccccccccccceEEE
Confidence 34455567777777655444 5555432 44555666666666666667777677774321111 000 0
Q ss_pred CcceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEE--EeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEEe
Q 041687 595 QLTISVCVLFIGGPDDREALAYGARMVENHSIMLTII--RFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYITR 672 (764)
Q Consensus 595 ~~~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvl--r~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~ 672 (764)
+...+++++-+ |.--.+|++.|.++. ..+++.||+ ||+.| +|++++.++..+ .+.+...|+
T Consensus 499 ~~G~~vail~~-G~~~~~al~vae~L~-~~Gi~~TVvd~rfvkP------------lD~~ll~~La~~---h~~~vtlEe 561 (627)
T COG1154 499 KEGEKVAILAF-GTMLPEALKVAEKLN-AYGISVTVVDPRFVKP------------LDEALLLELAKS---HDLVVTLEE 561 (627)
T ss_pred ecCCcEEEEec-chhhHHHHHHHHHHH-hcCCCcEEEcCeecCC------------CCHHHHHHHHhh---cCeEEEEec
Confidence 12345655544 555688999999998 556666665 55544 899999999876 334555566
Q ss_pred eecC---hhhHHHHHHhh
Q 041687 673 SIKD---GAETAGVLNAI 687 (764)
Q Consensus 673 ~V~~---g~~~~~~i~~~ 687 (764)
.+.+ |+.+.+++.+.
T Consensus 562 ~~~~GG~Gs~v~efl~~~ 579 (627)
T COG1154 562 NVVDGGFGSAVLEFLAAH 579 (627)
T ss_pred CcccccHHHHHHHHHHhc
Confidence 5543 45667777765
No 158
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=32.96 E-value=28 Score=33.61 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=22.0
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEee
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFI 634 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~ 634 (764)
+++++|.||+|...|. -|-+..+-.++++-++
T Consensus 2 ~v~vLfSGGKDSSLaA----~iL~klgyev~LVTvn 33 (198)
T COG2117 2 DVYVLFSGGKDSSLAA----LILDKLGYEVELVTVN 33 (198)
T ss_pred ceEEEecCCCchhHHH----HHHHHhCCCcEEEEEE
Confidence 6889999999986654 4555555555555553
No 159
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=32.70 E-value=6.3e+02 Score=28.84 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=8.3
Q ss_pred HHHHhHHHHHHH
Q 041687 203 SLISSAVNCFAV 214 (764)
Q Consensus 203 a~i~D~~~~ill 214 (764)
+.++|+++++++
T Consensus 428 tt~~D~~g~~~~ 439 (449)
T TIGR00400 428 TTIADALTLIIY 439 (449)
T ss_pred HHHHHHHHHHHH
Confidence 457888877655
No 160
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=32.33 E-value=84 Score=30.10 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=31.8
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhc
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMT 660 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~ 660 (764)
|+++.|.||+|+.-.|.++.+...+. .++.+-+..++ ....++++++..+
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg~e~--------p~t~~~~~~~~~~ 50 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTGYEF--------PETYEFVDELAKR 50 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-STB---------HHHHHHHHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecCccC--------HHHHHHHHHHHhh
Confidence 57899999999999999998888774 56655433221 1234556665554
No 161
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=31.86 E-value=2.6e+02 Score=27.25 Aligned_cols=93 Identities=20% Similarity=0.150 Sum_probs=48.8
Q ss_pred cCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEEe-eec--ChhhHHH
Q 041687 606 GGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYITR-SIK--DGAETAG 682 (764)
Q Consensus 606 gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~-~V~--~g~~~~~ 682 (764)
=.+.|.|+++.|+++++ .+.+++++-+-.+ .++..+++.... +.+++.+.+. ..+ +.+....
T Consensus 17 l~~~~~e~l~~A~~l~~-~~~~v~~v~~G~~------------~~~~~~~~~~~~--Gad~v~~~~~~~~~~~~~~~~a~ 81 (181)
T cd01985 17 LNPLDLEAVEAALRLKE-YGGEVTALVIGPP------------AAEVALREALAM--GADKVLLVEDPALAGYDPEATAK 81 (181)
T ss_pred cCHhhHHHHHHHHHHhh-cCCeEEEEEECCh------------HHHHHHHHHHHh--CCCEEEEEecCcccCCChHHHHH
Confidence 46778999999999987 4556666655311 111112222211 2333443321 111 1222233
Q ss_pred HHHhh--cCCccEEEEeccC--CCCchhhcccCCC
Q 041687 683 VLNAI--GDDFDLILVGRRH--DRHSQVLLGLSEW 713 (764)
Q Consensus 683 ~i~~~--~~~~DLiiVGr~~--~~~s~~~~gl~~w 713 (764)
++.+. ..++|++++|.+. +.-.+.++..-+|
T Consensus 82 ~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~ 116 (181)
T cd01985 82 ALAALIKKEKPDLILAGATSIGKQLAPRVAALLGV 116 (181)
T ss_pred HHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCC
Confidence 33332 2369999999986 3345666666565
No 162
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=31.35 E-value=2.4e+02 Score=30.12 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=71.1
Q ss_pred CCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC----ChhhHHHHHHhhhcCCcceEEEeecCCCCCCCccc
Q 041687 517 GLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD----SPQIRTVTKNVIKLAPCSVGILYYRGLFMDPKPIF 592 (764)
Q Consensus 517 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~----~~~~~~~n~~Vl~~ApCsVgIlvdrg~~~~~~~~~ 592 (764)
++..|-.|.... ..+-+.|++.|++.++.+||.-..+.. ...+.....+..+++++||++=-|.+... ..+.
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~--e~i~ 91 (281)
T PRK06806 16 ENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTF--EKIK 91 (281)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCCCCCH--HHHH
Confidence 445566676654 578899999999999999998876521 33567778889999999999988887431 1100
Q ss_pred -ccCcceeEEEeecc-CcchHHHHHHHHHHh---hCCCeEE--EEEEe
Q 041687 593 -SRQLTISVCVLFIG-GPDDREALAYGARMV---ENHSIML--TIIRF 633 (764)
Q Consensus 593 -~~~~~~~i~~~f~g-G~ddreAl~~a~rma---~~~~v~l--tvlr~ 633 (764)
.-+...+.++ +.+ ..+++|-++.++++. +..++.+ -+.|+
T Consensus 92 ~Al~~G~tsVm-~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghl 138 (281)
T PRK06806 92 EALEIGFTSVM-FDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRV 138 (281)
T ss_pred HHHHcCCCEEE-EcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeE
Confidence 0001112222 233 346788888776664 4455544 34444
No 163
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=31.31 E-value=4.9e+02 Score=32.06 Aligned_cols=86 Identities=19% Similarity=0.029 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHH--HH
Q 041687 104 SLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIH--VI 181 (764)
Q Consensus 104 ~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~--vv 181 (764)
++-+-++....|++.|+..+.+ +.-...........-++.+.+.+. +.+. ++..++.+|.+++.=..- ++
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl-~~k~------p~~~~l~l~~lm~~kgl~el~~ 384 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSL-YCKL------PLRDSLALGLLMSTKGLVELIV 384 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HhcC------chhHHHHHHHHHHhhhHHHHHH
Confidence 3445567778899999999988 222222222222233333344444 3222 246677777777654422 33
Q ss_pred HHHHhhcccccChhHH
Q 041687 182 LALLSDLKLLNSELGR 197 (764)
Q Consensus 182 ~~iL~elkll~s~~G~ 197 (764)
...-.|.|..+++.-.
T Consensus 385 ~~~~~~~~~~~~~~f~ 400 (769)
T KOG1650|consen 385 LNTGLDRKILSDEGFT 400 (769)
T ss_pred HHHHhhcCCcccchHH
Confidence 4445666766665433
No 164
>COG2035 Predicted membrane protein [Function unknown]
Probab=30.70 E-value=6e+02 Score=26.96 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhc--hhcccc
Q 041687 34 NIPNLIIPITSVTILSAIFWLILRPLGNHTFVSQMLAGILMG--PSFLER 81 (764)
Q Consensus 34 ~lp~~llqi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilG--P~~lg~ 81 (764)
=+|+..--+..+..+++++.++++. .|..+---.+|.++| |+.++.
T Consensus 58 Li~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~sVp~llk~ 105 (276)
T COG2035 58 LIPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILGSVPSLLKE 105 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556678889999999887 466666678899998 555665
No 165
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=29.97 E-value=36 Score=37.17 Aligned_cols=98 Identities=15% Similarity=0.216 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhccccccccee------------------------ee-----eccChhHHHHHHHHHhhhhHHHHH
Q 041687 325 SIIWAVFMPCFLINVGRRVNFFSVG------------------------LK-----TFLTVEDAVSLGLLLNCRGLYDVQ 375 (764)
Q Consensus 325 ~~~~~~~lPiFF~~~Gl~~dl~~li------------------------~i-----lg~~~~~a~~lg~~m~~kG~~~l~ 375 (764)
.+.++++=|+-|.-+|.-+|+.-++ .+ +|++.+|+..+|.+=..-|-..+.
T Consensus 130 gi~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIf 209 (433)
T PRK15475 130 AIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIY 209 (433)
T ss_pred HHhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHH
Confidence 3456788888899999999986550 00 136788888888877777777777
Q ss_pred HHHhhhh--cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhc-chhhhhhhhccc
Q 041687 376 IFSRAIQ--QQMITDESFAIMVASSVLKSAIIIPLVRVVYD-SSRRYVAYRRHT 426 (764)
Q Consensus 376 ~~~~~~~--~~~i~~~~f~~lvl~~ll~t~i~~plv~~l~~-p~~~~~~~~~r~ 426 (764)
+.+.--. .|-|.-..|+-| +++ =.+.||++|.+-- .+|+..-++.|+
T Consensus 210 vsskLAP~Llg~IaVAAYSYM---aLV-PiIQPpimklLTTkkER~I~M~~lr~ 259 (433)
T PRK15475 210 LSGKLAPELLGAIAVAAYSYM---ALV-PLIQPPIMKALTTETERKIRMVQLRT 259 (433)
T ss_pred hHhhhhhHhHHHHHHHHHHHH---HHH-hcccchHHHhccCHHHhCccCCCCCC
Confidence 6644211 122222333333 233 5567899998773 344443344443
No 166
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=29.80 E-value=1.6e+02 Score=30.30 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=49.8
Q ss_pred EEEEEEeccCC-ChHHHHHHHHHhcCccEEEecccc-CCChhhHHHHHHhhhcCCcceEEEee
Q 041687 521 VHCFTAVAPFA-SMHDDICLMAFEKCTALVILPFKR-ADSPQIRTVTKNVIKLAPCSVGILYY 581 (764)
Q Consensus 521 v~~~t~vs~~~-~m~~dI~~~A~e~~adlIIlp~h~-s~~~~~~~~n~~Vl~~ApCsVgIlvd 581 (764)
..++|-++|.+ ...++|.+.+.+-.+|.|++|-.- .+......+.+++-++..-||-++..
T Consensus 16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~ 78 (240)
T COG1646 16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPG 78 (240)
T ss_pred ceEEEEeCcccccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecC
Confidence 47888999999 999999999999999999999532 22455677888888899999877643
No 167
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=29.80 E-value=4.9e+02 Score=24.73 Aligned_cols=26 Identities=12% Similarity=-0.045 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC
Q 041687 37 NLIIPITSVTILSAIFWLILRPLGNH 62 (764)
Q Consensus 37 ~~llqi~lil~~~~l~~~ll~rl~~P 62 (764)
.++.|+++++.+..+...+.+-+++|
T Consensus 8 ~~l~ql~ill~~~~lGe~i~~ll~lP 33 (141)
T PRK04125 8 SFLHQAFIFAAIMLISNIIASFLPIP 33 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46778888888877777777666655
No 168
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=29.61 E-value=9.6e+02 Score=28.00 Aligned_cols=75 Identities=11% Similarity=0.060 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccc-cccccccccccCccchhHHHHHHHHHHHHHHHHHhhccC
Q 041687 41 PITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLE-RVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRID 119 (764)
Q Consensus 41 qi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg-~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d 119 (764)
+..+.+.+..+.+.+.+.+|...+++-..+|+.+|..... ...+... .......+.++.+.-.++..+.|+++.
T Consensus 210 ~~~l~l~~~~~~y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~-----~~~~~fw~~l~~ll~~~iFvllGl~l~ 284 (525)
T TIGR00831 210 EIALTILAPFAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTR-----LIALDFWSVIVFLVNGIIFILIGVQTP 284 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666777778888888889999999854222 1011000 012345677777777888889999886
Q ss_pred h
Q 041687 120 I 120 (764)
Q Consensus 120 ~ 120 (764)
.
T Consensus 285 ~ 285 (525)
T TIGR00831 285 G 285 (525)
T ss_pred H
Confidence 4
No 169
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=29.58 E-value=8.7e+02 Score=27.53 Aligned_cols=83 Identities=16% Similarity=0.227 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccCh
Q 041687 41 PITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDI 120 (764)
Q Consensus 41 qi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~ 120 (764)
+..+.+......+.+.+.++...+++-..+|+..| ..... +..- .-........-+.+..+.-.++.-+.|.+++.
T Consensus 226 ~~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~-~~~~~-~~~~--~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~ 301 (429)
T COG0025 226 ETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLG-EAVRI-NLSP--ASARLRLSSFWEVLDFLLNGLLFVLLGAQLPL 301 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHh-hhhhh-cccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34444555555666667777888888888998887 21110 1100 00011224466667777777777889999998
Q ss_pred hHHHhcc
Q 041687 121 RIIQKSG 127 (764)
Q Consensus 121 ~~l~~~~ 127 (764)
..+...+
T Consensus 302 ~~~~~~~ 308 (429)
T COG0025 302 SLLLALG 308 (429)
T ss_pred HHHHHhh
Confidence 8887665
No 170
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=29.53 E-value=1.7e+02 Score=28.12 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=24.2
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEee
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFI 634 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~ 634 (764)
++++.+.||.|.--++.++.+. +-++..+++.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~ 32 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFD 32 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEE
Confidence 5789999999999998888763 3346666664
No 171
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=29.21 E-value=38 Score=37.03 Aligned_cols=98 Identities=15% Similarity=0.212 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhccccccccee------------------------ee-----eccChhHHHHHHHHHhhhhHHHHH
Q 041687 325 SIIWAVFMPCFLINVGRRVNFFSVG------------------------LK-----TFLTVEDAVSLGLLLNCRGLYDVQ 375 (764)
Q Consensus 325 ~~~~~~~lPiFF~~~Gl~~dl~~li------------------------~i-----lg~~~~~a~~lg~~m~~kG~~~l~ 375 (764)
.+.++++=|+-|.-+|.-+|+.-++ .+ +|++.+|+..+|.+=..-|-..+.
T Consensus 130 gi~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIf 209 (433)
T PRK15476 130 AIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIY 209 (433)
T ss_pred HHhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHH
Confidence 3456788888899999999986550 00 136788888888877777777777
Q ss_pred HHHhhhh--cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhc-chhhhhhhhccc
Q 041687 376 IFSRAIQ--QQMITDESFAIMVASSVLKSAIIIPLVRVVYD-SSRRYVAYRRHT 426 (764)
Q Consensus 376 ~~~~~~~--~~~i~~~~f~~lvl~~ll~t~i~~plv~~l~~-p~~~~~~~~~r~ 426 (764)
+.+.--. .|-|.-..|+-| +++ =.+.||++|.+-- .+|+..-++.|+
T Consensus 210 vsskLAP~Llg~IaVAAYSYM---aLV-PiIQPpimklLTTkkER~I~M~~lr~ 259 (433)
T PRK15476 210 LSGKLAPELLGAIAVAAYSYM---ALV-PLIQPPIMKALTTEKERKIRMVQLRT 259 (433)
T ss_pred hHhhhhhHhHHHHHHHHHHHH---HHH-hcccchHHHhccCHHHhCccCCCCCC
Confidence 6644211 122222333333 233 5567899998773 344443344443
No 172
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=29.19 E-value=38 Score=37.02 Aligned_cols=98 Identities=15% Similarity=0.212 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHhccccccccee------------------------ee-----eccChhHHHHHHHHHhhhhHHHHH
Q 041687 325 SIIWAVFMPCFLINVGRRVNFFSVG------------------------LK-----TFLTVEDAVSLGLLLNCRGLYDVQ 375 (764)
Q Consensus 325 ~~~~~~~lPiFF~~~Gl~~dl~~li------------------------~i-----lg~~~~~a~~lg~~m~~kG~~~l~ 375 (764)
.+.++++=|+-|.-+|.-+|+.-++ .+ +|++.+|+..+|.+=..-|-..+.
T Consensus 130 gi~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIf 209 (433)
T PRK15477 130 AIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIY 209 (433)
T ss_pred HHhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHH
Confidence 3456788888899999999986550 00 136788888888877777777777
Q ss_pred HHHhhhh--cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhc-chhhhhhhhccc
Q 041687 376 IFSRAIQ--QQMITDESFAIMVASSVLKSAIIIPLVRVVYD-SSRRYVAYRRHT 426 (764)
Q Consensus 376 ~~~~~~~--~~~i~~~~f~~lvl~~ll~t~i~~plv~~l~~-p~~~~~~~~~r~ 426 (764)
+.+.--. .|-|.-..|+-| +++ =.+.||++|.+-- .+|+..-++.|+
T Consensus 210 vsskLAP~Llg~IaVAAYSYM---aLV-PiIQPpimklLTTkkER~I~M~~lr~ 259 (433)
T PRK15477 210 LSGKLAPELLGAIAVAAYSYM---ALV-PLIQPPIMKALTTEKERKIRMVQLRT 259 (433)
T ss_pred hHhhhhhHhHHHHHHHHHHHH---HHH-hcccchHHHhccCHHHhCccCCCCCC
Confidence 6644211 122222333333 233 5567899998773 344443344443
No 173
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=28.55 E-value=6.5e+02 Score=25.72 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=45.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH-HH
Q 041687 95 TMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAA-LE 173 (764)
Q Consensus 95 ~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~-~l 173 (764)
+.+.+..+ +|-.-.-+-.-+-=+.+.+||+++..+.--..+.++.++.+..++++++... .+..+. .-
T Consensus 47 gg~~l~~l--LgPatVALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~---------~~~~Sl~pk 115 (215)
T PF04172_consen 47 GGDILSFL--LGPATVALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSP---------EIILSLAPK 115 (215)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH---------HHHHHHHHH
Confidence 34455444 3333333444444457778888777766666666666666666666554321 122222 33
Q ss_pred hhhhHHHHHHHHhhcc
Q 041687 174 STISIHVILALLSDLK 189 (764)
Q Consensus 174 s~Ts~~vv~~iL~elk 189 (764)
|+| .|+...+-+++|
T Consensus 116 SVT-tpiAi~is~~iG 130 (215)
T PF04172_consen 116 SVT-TPIAIEISEQIG 130 (215)
T ss_pred Hhh-HHHHHHHHHHhC
Confidence 444 477777766666
No 174
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=28.43 E-value=7.8e+02 Score=26.61 Aligned_cols=110 Identities=15% Similarity=0.039 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhh
Q 041687 96 MTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALEST 175 (764)
Q Consensus 96 ~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~ 175 (764)
....+++-+-=+-...++.=++-|++.+.|.++|-+.+=+. ..+..++|+.+++...+.+..+ .|. .+.+++.
T Consensus 55 S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli-~sv~~vlGfIl~yp~~ksf~gd--~Wk----a~gmi~g 127 (384)
T COG5505 55 SPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLI-SSVGTVLGFILAYPLLKSFIGD--LWK----AGGMISG 127 (384)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHH-HHHHHHHHHHHHHHHHhhhcch--HHh----hhhheee
Confidence 33445555544445556666899999999999998766443 3345567777777666543211 111 1222222
Q ss_pred hhHHHHHHHHhhcccccChhHHHHHHHHHHHhHHHHHHH
Q 041687 176 ISIHVILALLSDLKLLNSELGRLAVSSSLISSAVNCFAV 214 (764)
Q Consensus 176 Ts~~vv~~iL~elkll~s~~G~lals~a~i~D~~~~ill 214 (764)
|-..--+..-.=.+.+..| .-..+++...|.++.-++
T Consensus 128 SytGGSaNmAAmqaaLeVP--~~~fsatlaaDtv~ySll 164 (384)
T COG5505 128 SYTGGSANMAAMQAALEVP--GEYFSATLAADTVMYSLL 164 (384)
T ss_pred eeeCCcchHHHHHhhhcCC--HHHHHHHHHHHHHHHHHH
Confidence 2211111111111223444 336788888888776443
No 175
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=27.74 E-value=85 Score=35.71 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcccCCCcEEEEEeeec---ChhhHHHHHHhhcC-CccEEEEeccCCC
Q 041687 650 DLNMINGFRMTCINNSNVEYITRSIK---DGAETAGVLNAIGD-DFDLILVGRRHDR 702 (764)
Q Consensus 650 d~~~~~e~~~~~~~~~~v~y~e~~V~---~g~~~~~~i~~~~~-~~DLiiVGr~~~~ 702 (764)
-.++++..+.+.... .+.+-...|- ...+++++|+.... +||.||++|++|.
T Consensus 149 ~~D~~~~~~~r~p~~-~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 149 IRDILTVLRRRFPLV-EVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred HHHHHHHHHhcCCCC-eEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 345555555542221 2333333332 13567778877653 3899999999985
No 176
>PRK00536 speE spermidine synthase; Provisional
Probab=27.09 E-value=1.8e+02 Score=30.72 Aligned_cols=30 Identities=13% Similarity=0.291 Sum_probs=15.7
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEe
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRF 633 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~ 633 (764)
.+||++ +||-| -..++...+|+. +++++-+
T Consensus 73 pk~VLI--iGGGD----Gg~~REvLkh~~-~v~mVeI 102 (262)
T PRK00536 73 LKEVLI--VDGFD----LELAHQLFKYDT-HVDFVQA 102 (262)
T ss_pred CCeEEE--EcCCc----hHHHHHHHCcCC-eeEEEEC
Confidence 345543 35555 233445556775 6666653
No 177
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=26.92 E-value=95 Score=33.56 Aligned_cols=86 Identities=13% Similarity=0.238 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhcccccccce-----eee------------------ecc------ChhHHHHHHHHHhhhhHHHHH
Q 041687 325 SIIWAVFMPCFLINVGRRVNFFSV-----GLK------------------TFL------TVEDAVSLGLLLNCRGLYDVQ 375 (764)
Q Consensus 325 ~~~~~~~lPiFF~~~Gl~~dl~~l-----i~i------------------lg~------~~~~a~~lg~~m~~kG~~~l~ 375 (764)
.+.++++=|+-|.-+|..+|+.-+ ..+ +|+ +.+|+..+|.+=..-|-..+.
T Consensus 59 gi~~~l~P~LIFlGIGAmtDFgpllanP~~~llGaaAQ~GiF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If 138 (354)
T TIGR01109 59 GIGSGIAPLLIFMGIGALTDFGPLLANPRTLLLGAAAQFGIFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIY 138 (354)
T ss_pred HHhcchHHHHHHHhccHHhhhHHHHhChHHHHHHHHHHhhHHHHHHHHHHhCCCcccccChhhceeeeeeccCCCchhhh
Confidence 455788999999999999998766 011 123 568888888877777777776
Q ss_pred HHHhhhh--cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041687 376 IFSRAIQ--QQMITDESFAIMVASSVLKSAIIIPLVRVVYD 414 (764)
Q Consensus 376 ~~~~~~~--~~~i~~~~f~~lvl~~ll~t~i~~plv~~l~~ 414 (764)
+.+.--. .|-|.-..|+-| .++ =.+.||++|.+-.
T Consensus 139 ~s~~lap~Llg~IaVAAYsYM---aLv-PiiqPpimklLtt 175 (354)
T TIGR01109 139 LSGKLAPELLAAIAVAAYSYM---ALV-PIIQPPIMKALTS 175 (354)
T ss_pred hHhhhhhHHHHHHHHHHHHHH---HHH-hcccchHHHhhcC
Confidence 6543211 122222233332 222 4567899998773
No 178
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=26.60 E-value=3e+02 Score=28.86 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=27.7
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEE
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIR 632 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr 632 (764)
.+++++.|.||.|.---+..|..-++..-+-+|+.-
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~s 52 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDS 52 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHHhccceEEEEEec
Confidence 459999999999998888877777775555566554
No 179
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=25.97 E-value=3.4e+02 Score=28.36 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=29.4
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCC--CeEEEEEEee
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENH--SIMLTIIRFI 634 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~--~v~ltvlr~~ 634 (764)
..+|++.+.||.|.--.|.+..++.+.. +.++..+++.
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 3589999999999988787887776543 4567777765
No 180
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=25.73 E-value=2.6e+02 Score=29.88 Aligned_cols=67 Identities=9% Similarity=-0.033 Sum_probs=52.3
Q ss_pred CCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEecccc----CCChhhHHHHHHhhhcCCcceEEEeecCCC
Q 041687 517 GLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKR----ADSPQIRTVTKNVIKLAPCSVGILYYRGLF 585 (764)
Q Consensus 517 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~----s~~~~~~~~n~~Vl~~ApCsVgIlvdrg~~ 585 (764)
++..|-.|.... -.+.+.|++.|++.++.+||.-+.+ .+-..+....+...+++++||++=-|.+..
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~~ 86 (284)
T PRK12737 16 EGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHHED 86 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 445566776654 4788999999999999999987765 223456778889999999999998888753
No 181
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=25.19 E-value=3.9e+02 Score=28.11 Aligned_cols=122 Identities=19% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCccEEEecccc-CCChhhHHHHHHhhhcCCcceEEEeecCCCCCCCcccccCcceeEEEeeccCcchHHH
Q 041687 535 DDICLMAFEKCTALVILPFKR-ADSPQIRTVTKNVIKLAPCSVGILYYRGLFMDPKPIFSRQLTISVCVLFIGGPDDREA 613 (764)
Q Consensus 535 ~dI~~~A~e~~adlIIlp~h~-s~~~~~~~~n~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~i~~~f~gG~ddreA 613 (764)
+.|.+.+.++--+.+++.|.+ .+....=.+..++... ++| +++|-|..- +|-
T Consensus 28 ~~i~~~~~~~~~~~~~~~~S~Gkds~V~l~L~~k~~~~--~~v-if~DTg~~f------------------------~Et 80 (261)
T COG0175 28 IEILRWAAEEFSNPVVVSFSGGKDSTVLLHLAAKAFPD--FPV-IFLDTGYHF------------------------PET 80 (261)
T ss_pred HHHHHHHHHHcCCCeEEEecCchhHHHHHHHHHHhcCC--CcE-EEEeCCCcC------------------------HHH
Q ss_pred HHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHH---HHhcccCCCcEE-EEEeeecChhhHHHHHHhhcC
Q 041687 614 LAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMING---FRMTCINNSNVE-YITRSIKDGAETAGVLNAIGD 689 (764)
Q Consensus 614 l~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e---~~~~~~~~~~v~-y~e~~V~~g~~~~~~i~~~~~ 689 (764)
++++.+++++.++.+.+.+ .++++.+. ...-...+ ... |....-.+. .-.++++.
T Consensus 81 ~~~~d~~~~~~~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~-~~r~c~~i~K~~p--l~~al~~~-- 139 (261)
T COG0175 81 YEFRDRLAEEYGLDLKVYR----------------PDDEVAEGEKYGGKLWEPS-VERWCCDIRKVEP--LKRALDEY-- 139 (261)
T ss_pred HHHHHHHHHHcCCeEEEec----------------CccchhhhhhcccCCCCCC-cchhhhhhHhhhh--HHHHHhhc--
Q ss_pred CccEEEEeccCCCCc
Q 041687 690 DFDLILVGRRHDRHS 704 (764)
Q Consensus 690 ~~DLiiVGr~~~~~s 704 (764)
..|.+++|.+++...
T Consensus 140 ~~~a~~~G~Rrdes~ 154 (261)
T COG0175 140 GFDAWFTGLRRDESP 154 (261)
T ss_pred CCceEEEeccccccc
No 182
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=24.99 E-value=6.9e+02 Score=24.84 Aligned_cols=29 Identities=24% Similarity=0.590 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 041687 237 ALLMFLSLTFIVVLIVFGLRPTMFWMMRK 265 (764)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~r~~~~~i~~~ 265 (764)
+.-.++..+.-....+++.+|++.|+.++
T Consensus 161 a~~l~iGvi~~~~ss~~ia~~l~~~l~~~ 189 (189)
T PF02355_consen 161 ALTLIIGVIIGTYSSLFIARPLLYWLVKK 189 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33444555555566778889999888764
No 183
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=24.10 E-value=2.8e+02 Score=29.63 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=51.4
Q ss_pred CCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccC----CChhhHHHHHHhhhcCCcceEEEeecCC
Q 041687 517 GLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRA----DSPQIRTVTKNVIKLAPCSVGILYYRGL 584 (764)
Q Consensus 517 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s----~~~~~~~~n~~Vl~~ApCsVgIlvdrg~ 584 (764)
++..|-.|.... ..+.+.+++.|++.++.+||.-..+. +-..+........+++++||++=-|.+.
T Consensus 16 ~~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~ 85 (284)
T PRK12857 16 GGYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGT 85 (284)
T ss_pred cCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 344566666654 47889999999999999999887662 2345677788889999999999888875
No 184
>PRK14561 hypothetical protein; Provisional
Probab=24.06 E-value=3.9e+02 Score=26.64 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=18.2
Q ss_pred eEEEeeccCcchHHHHHHHHHH
Q 041687 599 SVCVLFIGGPDDREALAYGARM 620 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rm 620 (764)
+|++.+.||.|.--.+..+.+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~ 23 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF 23 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc
Confidence 6899999999998888766554
No 185
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.79 E-value=7.7e+02 Score=24.93 Aligned_cols=106 Identities=8% Similarity=0.019 Sum_probs=56.0
Q ss_pred CCchhHHHHHHHHhHhcCCCeEEEEEEEeccCCCh--HHHHHHHHHhcCccEEEe-ccccCCChhhHHHHHHhhhcCCcc
Q 041687 499 SKIDPMINALRRYKHYQKGLKSVHCFTAVAPFASM--HDDICLMAFEKCTALVIL-PFKRADSPQIRTVTKNVIKLAPCS 575 (764)
Q Consensus 499 ~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m--~~dI~~~A~e~~adlIIl-p~h~s~~~~~~~~n~~Vl~~ApCs 575 (764)
....++.+.+++..++.+ ..+..+ .+ ..+. -.+..+....+++|-||+ |.+.. +. .. +-+++++.|
T Consensus 12 ~~~~~~~~gi~~~~~~~~--~~~~~~--~~-~~~~~~~~~~i~~l~~~~~dgiii~~~~~~-~~----~~-~~~~~~~iP 80 (265)
T cd06285 12 TVMATMYEGIEEAAAERG--YSTFVA--NT-GDNPDAQRRAIEMLLDRRVDGLILGDARSD-DH----FL-DELTRRGVP 80 (265)
T ss_pred ccHHHHHHHHHHHHHHCC--CEEEEE--eC-CCCHHHHHHHHHHHHHcCCCEEEEecCCCC-hH----HH-HHHHHcCCC
Confidence 345667777777665532 333222 12 2232 235666778889996665 43321 11 12 335667888
Q ss_pred eEEEeecCCCCCCCcccccCcceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEE
Q 041687 576 VGILYYRGLFMDPKPIFSRQLTISVCVLFIGGPDDREALAYGARMVENHSIMLTII 631 (764)
Q Consensus 576 VgIlvdrg~~~~~~~~~~~~~~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvl 631 (764)
| |++||.... ..+.+..+.+-+...++.+.++-.-++-++
T Consensus 81 v-v~~~~~~~~---------------~~~V~~d~~~ag~~a~~~L~~~g~~~i~~i 120 (265)
T cd06285 81 F-VLVLRHAGT---------------SPAVTGDDVLGGRLATRHLLDLGHRRIAVL 120 (265)
T ss_pred E-EEEccCCCC---------------CCEEEeCcHHHHHHHHHHHHHCCCccEEEE
Confidence 8 777875320 123344444444556666776655555443
No 186
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=22.80 E-value=8.5e+02 Score=25.10 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=46.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhccChhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHh
Q 041687 95 TMTVLNVFESLGIIYMVFLLSVRIDIRIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALES 174 (764)
Q Consensus 95 ~~~~l~~la~lGli~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls 174 (764)
+.+++..+ +|-...-|-.-+=-+.+.+||+++.....-..+.++.+..+..++.+++... ....=-..-|
T Consensus 57 g~~~l~~l--LgPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~--------~i~~Sl~pkS 126 (226)
T TIGR00659 57 GGGVINDL--LGPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGP--------EIIASLLPKS 126 (226)
T ss_pred hhHHHHHh--hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--------HHHHHhhhHH
Confidence 34455544 3444444555555677788888877666555666666666666666654321 1111112334
Q ss_pred hhhHHHHHHHHhhcc
Q 041687 175 TISIHVILALLSDLK 189 (764)
Q Consensus 175 ~Ts~~vv~~iL~elk 189 (764)
+| .|+...+-+++|
T Consensus 127 vT-tpiAm~vs~~iG 140 (226)
T TIGR00659 127 VT-TPIAMHVSEMIG 140 (226)
T ss_pred hh-HHHHHHHHHHhC
Confidence 44 367777766665
No 187
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=22.71 E-value=3.9e+02 Score=26.04 Aligned_cols=97 Identities=9% Similarity=0.066 Sum_probs=52.0
Q ss_pred eeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHhcC
Q 041687 437 RILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHYQK 516 (764)
Q Consensus 437 rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 516 (764)
+|+|++..-.+.-.++.++.... ++.+.++.++|+-.-.. ..++.-....+++.+..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~-~~~~~~~~~~~vdh~~~---------------------~~s~~~~~~v~~~~~~~- 57 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELR-RRNGIKLIAVHVDHGLR---------------------EESDEEAEFVEEICEQL- 57 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHH-TTTTTEEEEEEEE-STS---------------------CCHHHHHHHHHHHHHHT-
T ss_pred CEEEEEcCCHHHHHHHHHHHHHH-HhcCCCeEEEEEecCCC---------------------cccchhHHHHHHHHHhc-
Confidence 58899998888888888888885 67777899888843111 11222233344554442
Q ss_pred CCeEEEEEEEe---ccCCCh--------HHHHHHHHHhcCccEEEeccccCC
Q 041687 517 GLKSVHCFTAV---APFASM--------HDDICLMAFEKCTALVILPFKRAD 557 (764)
Q Consensus 517 ~~v~v~~~t~v---s~~~~m--------~~dI~~~A~e~~adlIIlp~h~s~ 557 (764)
+++......- .+..+. ++-+.+.|.+++++.|++|-|..|
T Consensus 58 -~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD 108 (182)
T PF01171_consen 58 -GIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDD 108 (182)
T ss_dssp -T-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHH
T ss_pred -CCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCc
Confidence 2333322111 011121 234556788899999999998754
No 188
>PRK10711 hypothetical protein; Provisional
Probab=22.65 E-value=8.7e+02 Score=25.14 Aligned_cols=126 Identities=11% Similarity=0.053 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhccCC----ChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhccCh
Q 041687 45 VTILSAIFWLILRPLGN----HTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVRIDI 120 (764)
Q Consensus 45 il~~~~l~~~ll~rl~~----P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle~d~ 120 (764)
.+++-.+..++.||.+. |-+++-++.-.++- .+|. . +.++ .++.+++..+ +|-.-..|-.-+=-+.
T Consensus 12 Tl~~y~~~~~l~~k~~~~~l~Pll~s~~~ii~~L~--~~~i-~--Y~~Y---~~g~~~l~~l--LgPAtVALAvPLY~q~ 81 (231)
T PRK10711 12 TLIVFFAARKLAARFKFPLLNPLLVAMVVIIPFLL--LTGI-P--YEHY---FKGSEVLNDL--LQPAVVALAFPLYEQL 81 (231)
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHH--HhCC-C--HHHH---HhccHHHHhh--hhHHHHHHHHHHHHhH
Confidence 44445555566666664 44444433333222 1222 1 1111 0234555544 4444455555555677
Q ss_pred hHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHhhcc
Q 041687 121 RIIQKSGRLAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTISIHVILALLSDLK 189 (764)
Q Consensus 121 ~~l~~~~~~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elk 189 (764)
+.+||+++....--..|.++..+.+..++.+++... ....=-..-|+| .|+...+-+++|
T Consensus 82 ~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~--------~~~~Sl~pkSVT-tPIAm~is~~iG 141 (231)
T PRK10711 82 HQIRARWKSIISICFIGSVVAMVTGTAVALWMGATP--------EIAASILPKSVT-TPIAMAVGGSIG 141 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--------HHHHHHhhhhhh-HHHHHHHHHHhC
Confidence 888888877766556666666666666666664321 111111234555 367777666665
No 189
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=22.52 E-value=1.2e+03 Score=26.51 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=55.2
Q ss_pred hccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHHHHHHhhc-cChhHHHhccchhHHH-H
Q 041687 57 RPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYMVFLLSVR-IDIRIIQKSGRLAIVI-G 134 (764)
Q Consensus 57 ~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~lF~~Gle-~d~~~l~~~~~~~~~i-a 134 (764)
+-+++|..+..|+.=+++- .+|.+.+++. ....++.++++.--.--+|+-+|+. +|++.+.+.......+ .
T Consensus 267 ~~i~ih~~a~mIi~~~i~K--~~~lvP~~~e-----~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~ 339 (414)
T PF03390_consen 267 KLIGIHAYAWMIILVAIVK--AFGLVPESLE-----EGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIV 339 (414)
T ss_pred HhcCCcHHHHHHHHHHHHH--HhCcCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHH
Confidence 3359999999988877765 3455322111 1124455666666666789999998 9999998876544333 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 041687 135 VGSFVLSMIATILASSFVKGA 155 (764)
Q Consensus 135 ~~~~~~p~~~g~~~~~~l~~~ 155 (764)
+..++...+.++.++++++.+
T Consensus 340 ~~~Vl~~~~~a~~vG~l~g~Y 360 (414)
T PF03390_consen 340 LATVLGAVIGAFLVGKLVGFY 360 (414)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 333333333445555555443
No 190
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=22.46 E-value=1.1e+02 Score=34.24 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=26.3
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeec
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAM 636 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~ 636 (764)
+|++.|.||.|..-++.++.+- +.+++.+++..+
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEecC
Confidence 4789999999998888776543 667888888654
No 191
>COG3371 Predicted membrane protein [Function unknown]
Probab=22.08 E-value=5.8e+02 Score=25.29 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=49.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchhccccccccccccccCccchhHHHHHHHHHHHHH
Q 041687 31 PNFNIPNLIIPITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPSFLERVNEKFSNKIFTPKTMTVLNVFESLGIIYM 110 (764)
Q Consensus 31 l~~~lp~~llqi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~~lg~l~~~~~~~~fp~~~~~~l~~la~lGli~~ 110 (764)
+-|+..+.+.-+..++....+... |.+-+.-.-.+++|+.+. ..|. . |.+ ..-..+..+...++
T Consensus 49 ~ifN~glIl~Gll~i~~s~~l~r~---k~~~~g~~ll~is~lfLa--LVGV-F--------pEg--t~pH~~vs~~ffll 112 (181)
T COG3371 49 WIFNTGLILLGLLVILFSILLIRN---KIENYGGALLIISGLFLA--LVGV-F--------PEG--TPPHVFVSILFFLL 112 (181)
T ss_pred eEEechHHHHHHHHHHHHHHHHHH---HhhhcchHHHHHHHHHHH--heee-C--------CCC--CCchHHHHHHHHHH
Confidence 445555555444433332222111 566666666778888776 2344 2 221 13456677788889
Q ss_pred HHHHhhccChhHHHhccchhHH
Q 041687 111 VFLLSVRIDIRIIQKSGRLAIV 132 (764)
Q Consensus 111 lF~~Gle~d~~~l~~~~~~~~~ 132 (764)
+|.+.+-+..+..++..+....
T Consensus 113 ~fi~~~i~si~~~~~~~~~~~~ 134 (181)
T COG3371 113 SFIAMLIYSIGRLLRNRSGFGL 134 (181)
T ss_pred HHHHHHHHHHHHHHhhhhhHHH
Confidence 9999998888887775444433
No 192
>PLN00200 argininosuccinate synthase; Provisional
Probab=21.87 E-value=2e+02 Score=32.49 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=27.5
Q ss_pred eeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeec
Q 041687 598 ISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAM 636 (764)
Q Consensus 598 ~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~ 636 (764)
++|++.|.||-|..-++.++++ +.+..++-+.+..+
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e---~~G~eViav~id~G 41 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRE---NYGCEVVCFTADVG 41 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH---hhCCeEEEEEEECC
Confidence 5899999999999988887755 22456777777654
No 193
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=20.75 E-value=1.4e+02 Score=33.56 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=50.0
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEEeeecChh
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYITRSIKDGA 678 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~~V~~g~ 678 (764)
||+++=.||.. =++||+++++|.+.=. ++- |.+.- + .. + .+.. + + +.. .|-+
T Consensus 2 kVLviGsGgRE----HAiA~~la~s~~v~~~--~~a-pgN~G-~---a~---~-----~~~~--~---~---~~~-~~~~ 53 (428)
T COG0151 2 KVLVIGSGGRE----HALAWKLAQSPLVLYV--YVA-PGNPG-T---AL---E-----AYLV--N---I---EID-TDHE 53 (428)
T ss_pred eEEEEcCCchH----HHHHHHHhcCCceeEE--EEe-CCCCc-c---ch---h-----hhhc--c---C---ccc-cCHH
Confidence 67777777776 3567888887765432 222 32221 1 11 1 1111 1 0 011 4557
Q ss_pred hHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCC
Q 041687 679 ETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWS 714 (764)
Q Consensus 679 ~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~ 714 (764)
+++++.++. +.||++||. ..||..|+.||-
T Consensus 54 ~lv~fA~~~--~idl~vVGP----E~pL~~GvvD~l 83 (428)
T COG0151 54 ALVAFAKEK--NVDLVVVGP----EAPLVAGVVDAL 83 (428)
T ss_pred HHHHHHHHc--CCCEEEECC----cHHHhhhhHHHH
Confidence 788888875 899999997 579999999874
No 194
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=20.41 E-value=8.7e+02 Score=26.79 Aligned_cols=66 Identities=17% Similarity=0.094 Sum_probs=52.1
Q ss_pred CCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccC----CChhhHHHHHHhhhcCC-cceEEEeecCC
Q 041687 517 GLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRA----DSPQIRTVTKNVIKLAP-CSVGILYYRGL 584 (764)
Q Consensus 517 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s----~~~~~~~~n~~Vl~~Ap-CsVgIlvdrg~ 584 (764)
++..|-.|.... -.+.+.|++.|++.++.+||.-+.+. .-..+....+...++++ .||++=-|.|.
T Consensus 14 ~~yAV~AfN~~n--~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~ 84 (347)
T TIGR01521 14 FGYGVPAFNVNN--MEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGN 84 (347)
T ss_pred cCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 345566666654 57889999999999999999987762 23557788888899997 99999888874
No 195
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=20.37 E-value=1.6e+02 Score=27.39 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=26.3
Q ss_pred EEEEEeccCCChHHHHHHHHHhcCccEEEecccc
Q 041687 522 HCFTAVAPFASMHDDICLMAFEKCTALVILPFKR 555 (764)
Q Consensus 522 ~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~ 555 (764)
.-.-++-|-..||..|.++|++-++|++|-|..+
T Consensus 72 ~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~ 105 (127)
T PF03686_consen 72 DLIYSIRPPPELQPPILELAKKVGADLIIRPLGG 105 (127)
T ss_dssp EEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTT
T ss_pred cEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCC
Confidence 4455677889999999999999999999999965
No 196
>PRK06801 hypothetical protein; Provisional
Probab=20.35 E-value=9e+02 Score=25.83 Aligned_cols=106 Identities=12% Similarity=0.076 Sum_probs=70.8
Q ss_pred CCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccC----CChhhHHHHHHhhhcCCcceEEEeecCCCCCCCccc
Q 041687 517 GLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRA----DSPQIRTVTKNVIKLAPCSVGILYYRGLFMDPKPIF 592 (764)
Q Consensus 517 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s----~~~~~~~~n~~Vl~~ApCsVgIlvdrg~~~~~~~~~ 592 (764)
++..|-.|.... -.+.+.|++.|++.++.+||.-..+. +-..+....+...++++-||++=-|.+... ..+.
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~--e~i~ 91 (286)
T PRK06801 16 HGYALGAFNVLD--SHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHGLHF--EAVV 91 (286)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCCCCH--HHHH
Confidence 445666776654 57889999999999999999887662 224577888899999999999988887531 1100
Q ss_pred --ccCcceeEEEeeccCc-chHHHHHHHHHH---hhCCCeEE
Q 041687 593 --SRQLTISVCVLFIGGP-DDREALAYGARM---VENHSIML 628 (764)
Q Consensus 593 --~~~~~~~i~~~f~gG~-ddreAl~~a~rm---a~~~~v~l 628 (764)
-......|. +.|.. +++|-++.++++ |+..++.+
T Consensus 92 ~Ai~~GftSVm--~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 92 RALRLGFSSVM--FDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHHHhCCcEEE--EcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 001122332 35543 557888877665 66666654
No 197
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=20.33 E-value=1.8e+02 Score=26.38 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=29.5
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhchh
Q 041687 27 GSEQPNFNIPNLIIPITSVTILSAIFWLILRPLGNHTFVSQMLAGILMGPS 77 (764)
Q Consensus 27 ~~~~l~~~lp~~llqi~lil~~~~l~~~ll~rl~~P~iv~~ilaGiilGP~ 77 (764)
-..|+.+++|.-.+.=.+..+-..++-..+-...--.+.-.++.|++.||+
T Consensus 60 ~RTPlTHT~pRSv~WGli~slp~i~~l~~~~~~~~~~il~~Ll~Gvl~GPS 110 (114)
T PF06939_consen 60 VRTPLTHTLPRSVLWGLIPSLPLIILLYYYYGYFNYIILLALLSGVLVGPS 110 (114)
T ss_pred ecCCCccCcchhhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhhccchH
Confidence 578999999965544333222112222222222334456668899999997
Done!