Query 041687
Match_columns 764
No_of_seqs 299 out of 1869
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 16:25:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.8 2.1E-20 7E-25 202.6 11.5 276 98-413 59-384 (388)
2 3mt0_A Uncharacterized protein 99.8 1.7E-17 5.8E-22 175.9 22.2 255 435-744 7-278 (290)
3 3olq_A Universal stress protei 99.7 1.9E-17 6.6E-22 177.6 14.1 276 435-744 7-307 (319)
4 3loq_A Universal stress protei 99.7 1.3E-16 4.5E-21 169.3 18.3 264 435-744 22-292 (294)
5 3cis_A Uncharacterized protein 99.7 2.2E-16 7.6E-21 168.9 17.6 277 434-743 18-307 (309)
6 3ab8_A Putative uncharacterize 99.7 1.7E-16 5.6E-21 166.1 14.6 252 436-741 1-268 (268)
7 3fdx_A Putative filament prote 99.1 4.6E-11 1.6E-15 111.9 7.4 136 436-579 2-142 (143)
8 3s3t_A Nucleotide-binding prot 99.0 1.9E-10 6.5E-15 108.0 6.7 134 435-579 5-145 (146)
9 1mjh_A Protein (ATP-binding do 99.0 8.8E-10 3E-14 105.5 11.2 139 435-580 5-158 (162)
10 3hgm_A Universal stress protei 99.0 1E-10 3.6E-15 109.9 4.4 136 436-578 3-146 (147)
11 3dlo_A Universal stress protei 99.0 6E-10 2.1E-14 106.4 9.8 128 434-579 23-154 (155)
12 1tq8_A Hypothetical protein RV 99.0 9.8E-10 3.4E-14 105.9 11.0 137 434-581 16-158 (163)
13 3tnj_A Universal stress protei 99.0 3.1E-10 1.1E-14 107.2 6.0 139 435-581 6-147 (150)
14 2dum_A Hypothetical protein PH 99.0 1E-09 3.5E-14 106.1 9.5 143 435-582 5-157 (170)
15 2z08_A Universal stress protei 99.0 3.9E-10 1.3E-14 105.0 5.9 130 436-579 3-136 (137)
16 1jmv_A USPA, universal stress 99.0 1.6E-09 5.5E-14 101.1 9.3 134 436-582 3-139 (141)
17 3fg9_A Protein of universal st 98.9 4.1E-10 1.4E-14 107.2 4.8 136 434-579 14-155 (156)
18 2gm3_A Unknown protein; AT3G01 98.9 3.5E-09 1.2E-13 102.8 11.2 141 435-583 5-165 (175)
19 3idf_A USP-like protein; unive 98.9 7E-10 2.4E-14 103.2 4.8 131 436-579 2-137 (138)
20 1q77_A Hypothetical protein AQ 98.7 2.6E-08 8.7E-13 92.5 9.8 129 435-579 4-137 (138)
21 3mt0_A Uncharacterized protein 98.6 8.1E-08 2.8E-12 101.1 7.8 135 434-583 133-278 (290)
22 3loq_A Universal stress protei 98.5 4E-07 1.4E-11 95.9 10.9 120 433-581 168-290 (294)
23 3olq_A Universal stress protei 98.5 1.1E-07 3.9E-12 101.2 6.2 143 434-585 155-309 (319)
24 3s3t_A Nucleotide-binding prot 98.5 1.2E-06 4.1E-11 81.7 12.5 129 597-741 5-146 (146)
25 3tnj_A Universal stress protei 98.4 9.7E-07 3.3E-11 82.9 10.3 129 597-743 6-148 (150)
26 3dlo_A Universal stress protei 98.4 6.1E-07 2.1E-11 85.4 8.7 127 597-741 24-155 (155)
27 3hgm_A Universal stress protei 98.4 7.8E-07 2.7E-11 83.1 9.0 126 597-740 2-147 (147)
28 3fdx_A Putative filament prote 98.4 1.5E-06 5.2E-11 80.7 10.9 125 598-741 2-143 (143)
29 2z08_A Universal stress protei 98.4 1.3E-06 4.4E-11 80.8 10.3 128 597-741 2-137 (137)
30 3idf_A USP-like protein; unive 98.3 2E-06 6.7E-11 79.5 10.7 127 598-741 2-138 (138)
31 1mjh_A Protein (ATP-binding do 98.3 3.3E-06 1.1E-10 80.3 11.4 130 597-743 5-160 (162)
32 1tq8_A Hypothetical protein RV 98.3 3.4E-06 1.2E-10 80.8 11.4 131 596-744 16-160 (163)
33 1jmv_A USPA, universal stress 98.3 3.9E-06 1.3E-10 77.8 11.4 127 597-743 2-139 (141)
34 3fg9_A Protein of universal st 98.2 3.3E-06 1.1E-10 79.9 9.9 128 596-741 14-156 (156)
35 2dum_A Hypothetical protein PH 98.2 4.9E-06 1.7E-10 79.9 11.0 131 597-743 5-157 (170)
36 3cis_A Uncharacterized protein 98.2 2.6E-06 8.9E-11 90.4 9.1 128 435-580 171-305 (309)
37 1q77_A Hypothetical protein AQ 98.1 9.6E-06 3.3E-10 74.9 9.1 39 597-635 4-43 (138)
38 3ab8_A Putative uncharacterize 98.0 7.1E-06 2.4E-10 84.9 6.7 114 435-579 154-267 (268)
39 2gm3_A Unknown protein; AT3G01 97.9 0.0001 3.5E-09 70.9 12.9 130 597-743 5-164 (175)
40 3g40_A Na-K-CL cotransporter; 94.5 1.1 3.8E-05 46.0 16.3 222 433-702 18-256 (294)
41 3zux_A Transporter, ASBTNM; tr 94.4 6.1 0.00021 41.7 27.3 107 102-221 44-154 (332)
42 1o97_C Electron transferring f 73.5 6.2 0.00021 40.2 7.2 98 602-713 31-140 (264)
43 1efp_B ETF, protein (electron 73.0 8.5 0.00029 38.9 8.1 97 602-713 31-141 (252)
44 1efv_B Electron transfer flavo 72.5 8.3 0.00029 39.0 7.8 97 602-713 34-144 (255)
45 1zun_A Sulfate adenylyltransfe 71.0 6.8 0.00023 41.2 7.0 55 598-660 47-101 (325)
46 1ni5_A Putative cell cycle pro 62.3 27 0.00092 38.1 9.9 96 598-701 14-119 (433)
47 3a2k_A TRNA(Ile)-lysidine synt 56.9 25 0.00085 38.8 8.5 59 597-660 18-76 (464)
48 2wsi_A FAD synthetase; transfe 55.5 45 0.0015 34.5 9.8 93 598-702 54-169 (306)
49 1sur_A PAPS reductase; assimil 52.3 53 0.0018 31.7 9.3 51 598-660 45-95 (215)
50 3fwk_A FMN adenylyltransferase 42.0 30 0.001 35.9 5.6 92 598-701 59-171 (308)
51 2l0e_A Sodium/hydrogen exchang 39.1 4.7 0.00016 27.2 -0.7 27 164-190 4-30 (33)
52 1wy5_A TILS, hypothetical UPF0 39.0 38 0.0013 35.1 6.1 58 597-660 24-82 (317)
53 2oq2_A Phosphoadenosine phosph 32.5 43 0.0015 33.7 5.0 54 599-661 43-96 (261)
54 4b4t_W RPN10, 26S proteasome r 30.9 1.2E+02 0.0041 30.7 7.9 35 598-634 108-145 (268)
55 3k32_A Uncharacterized protein 28.7 3.3E+02 0.011 25.7 10.5 35 598-636 7-41 (203)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.82 E-value=2.1e-20 Score=202.56 Aligned_cols=276 Identities=12% Similarity=0.138 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHH----Hhccc--hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 041687 98 VLNVFESLGIIYMVFLLSVRIDIRII----QKSGR--LAIVIGVGSFVLSMIATILASSFVKGAIQLEENLGNSLKTVAA 171 (764)
Q Consensus 98 ~l~~la~lGli~~lF~~Gle~d~~~l----~~~~~--~~~~ia~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~ 171 (764)
....+.+-.+.+|+|.+|+|+|.+.+ ++.+| .....++.|+++|++++.. +. .. .........
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~----~~-~~------~~~~~~gw~ 127 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA----FN-YA------DPITREGWA 127 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----GC-CS------STTHHHHTS
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH----Hh-cC------ChhhhhhhH
Confidence 45677888899999999999999887 55444 3788899999999987422 21 11 122334455
Q ss_pred HHhhhhHHHHHHHHhhccc-ccChhHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 041687 172 LESTISIHVILALLSDLKL-LNSELGRLAVSSSLISSAVNCFAVTFTGNSSGQAAQAPPPGRFKHAALLMFLSLTFIVVL 250 (764)
Q Consensus 172 ~ls~Ts~~vv~~iL~elkl-l~s~~G~lals~a~i~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (764)
+.+.|+.+....++..++- ..+..++.+++.|++||+.+|+++ +++.. + . .. ..+... .+++++.
T Consensus 128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivI-Avfyt---~-~------~~--~~~l~~-~~~~~~~ 193 (388)
T 1zcd_A 128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIII-ALFYT---N-D------LS--MASLGV-AAVAIAV 193 (388)
T ss_dssp SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHH-HHHSC---C-C------CC--HHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHH-HHHHc---C-C------cc--HHHHHH-HHHHHHH
Confidence 6677899988899999865 556677999999999999999999 66532 1 1 12 222211 1111111
Q ss_pred HHHhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCC----CChhHHHHHHHHH
Q 041687 251 IVFGLRPTMFWMMRKTPGGKSPKRGHLWFVNIMLLGCSLLAEITGLHGYFGAVILGINTPATP----PMGASLVDKIESI 326 (764)
Q Consensus 251 ~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~lG~~~~lGaf~~GL~lp~~~----p~~~~l~~kl~~~ 326 (764)
. +..+|.. ++....+.++ .+ .+.+.++..|+|+++|+|++|+++|..+ +..++++++++++
T Consensus 194 ~---------~~l~r~~----v~~~~~y~~l-gl-~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~ 258 (388)
T 1zcd_A 194 L---------AVLNLCG----ARRTGVYILV-GV-VLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPW 258 (388)
T ss_dssp H---------HHHHHTT----CCCTHHHHHH-HH-HHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHH
T ss_pred H---------HHHHHhc----chhHHHHHHH-HH-HHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHH
Confidence 1 1222221 2233334433 22 4567779999999999999999999853 3478899999999
Q ss_pred HHHHHHHHH-HHHhcccccccce----------e---eee-----------------------ccChhHHHHHHHHHhhh
Q 041687 327 IWAVFMPCF-LINVGRRVNFFSV----------G---LKT-----------------------FLTVEDAVSLGLLLNCR 369 (764)
Q Consensus 327 ~~~~~lPiF-F~~~Gl~~dl~~l----------i---~il-----------------------g~~~~~a~~lg~~m~~k 369 (764)
+..+++|+| |+..|+++|.... + .++ |++|+|...+|++++.+
T Consensus 259 v~~~ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gig 338 (388)
T 1zcd_A 259 VAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIG 338 (388)
T ss_dssp HHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccc
Confidence 999999999 9999999987321 0 011 17899999999999999
Q ss_pred hHHHHHHHHhhhhcCC--CChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041687 370 GLYDVQIFSRAIQQQM--ITDESFAIMVASSVLKSAIIIPLVRVVY 413 (764)
Q Consensus 370 G~~~l~~~~~~~~~~~--i~~~~f~~lvl~~ll~t~i~~plv~~l~ 413 (764)
+++++++++.+++.+. +.++.+..+++++++++.+.+.++++.+
T Consensus 339 ftmsL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 339 FTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HHHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred hHHHHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998876 3567788888888887666666565443
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.77 E-value=1.7e-17 Score=175.94 Aligned_cols=255 Identities=13% Similarity=0.069 Sum_probs=174.6
Q ss_pred cceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHh
Q 041687 435 ELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHY 514 (764)
Q Consensus 435 e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 514 (764)
-.|||+|++++++...+++.+..++ ++.+.+++++|+++ + .+ .++.++.+.+..+.
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la-~~~~a~l~ll~v~~-~---------~~-------------~~~~l~~~~~~~~~ 62 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIA-GVTQSHLHLLVCEK-R---------RD-------------HSAALNDLAQELRE 62 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHH-HHHCCEEEEEEECS-S---------SC-------------CHHHHHHHHHHHHH
T ss_pred hceEEEEeCCCccchHHHHHHHHHH-HhcCCeEEEEEeeC-c---------HH-------------HHHHHHHHHHHHhh
Confidence 3689999999999999999999995 56678999999987 2 11 12222222222222
Q ss_pred cCCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEEeecCCCCCCCcc
Q 041687 515 QKGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGILYYRGLFMDPKPI 591 (764)
Q Consensus 515 ~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIlvdrg~~~~~~~~ 591 (764)
.+++++..... ..+..+.|++.|+++++||||||+|+.+ +..+|++.+++++++||||.++.... . +
T Consensus 63 --~~~~~~~~~~~--~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~~-~--~--- 132 (290)
T 3mt0_A 63 --EGYSVSTNQAW--KDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTAR-P--W--- 132 (290)
T ss_dssp --TTCCEEEEEEC--SSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCCS-C--S---
T ss_pred --CCCeEEEEEEe--CCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCCC-C--C---
Confidence 35666665542 3678999999999999999999999843 56789999999999999998874222 1 1
Q ss_pred cccCcceeEEEeeccCcc-------hHHHHHHHHHHhhCCCeEEEEEEeeecCCCCC-CC-----cchhhhHHHHHHHHH
Q 041687 592 FSRQLTISVCVLFIGGPD-------DREALAYGARMVENHSIMLTIIRFIAMNHTTN-DN-----LIEESCDLNMINGFR 658 (764)
Q Consensus 592 ~~~~~~~~i~~~f~gG~d-------dreAl~~a~rma~~~~v~ltvlr~~~~~~~~~-~~-----~~e~~~d~~~~~e~~ 658 (764)
..++|++++.|+++ .+.|+++|.++|+..+++++++++.++..... .. +..++..++.++++.
T Consensus 133 ----~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (290)
T 3mt0_A 133 ----TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQ 208 (290)
T ss_dssp ----TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHH
Confidence 25799999999998 79999999999999999999999986532110 00 111112344455555
Q ss_pred hcccC-CCcEEEEEeeecChhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccE
Q 041687 659 MTCIN-NSNVEYITRSIKDGAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASI 737 (764)
Q Consensus 659 ~~~~~-~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~sv 737 (764)
.+..- .......+-.+ +.++.+.+++. ++||++||+++.. |+.+| -+|-..+-+... ++++|
T Consensus 209 ~~~g~~~~~~~v~~g~~--~~~I~~~a~~~--~~dLiVmG~~g~~------~~~~~----~~Gsv~~~vl~~---~~~pV 271 (290)
T 3mt0_A 209 AEYGFSDEQLHIEEGPA--DVLIPRTAQKL--DAVVTVIGTVART------GLSGA----LIGNTAEVVLDT---LESDV 271 (290)
T ss_dssp HHHTCCTTTEEEEESCH--HHHHHHHHHHH--TCSEEEEECCSSC------CGGGC----CSCHHHHHHHTT---CSSEE
T ss_pred HHcCCCcceEEEeccCH--HHHHHHHHHhc--CCCEEEECCCCCc------CCcce----ecchHHHHHHhc---CCCCE
Confidence 44321 11222222222 34466666655 7999999998632 23232 378888888765 67899
Q ss_pred EEEeecc
Q 041687 738 MVIQQQA 744 (764)
Q Consensus 738 Lvvqq~~ 744 (764)
|||+.+.
T Consensus 272 Lvv~~~~ 278 (290)
T 3mt0_A 272 LVLKPDD 278 (290)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9998753
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.72 E-value=1.9e-17 Score=177.62 Aligned_cols=276 Identities=9% Similarity=0.025 Sum_probs=175.8
Q ss_pred cceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHh
Q 041687 435 ELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHY 514 (764)
Q Consensus 435 e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 514 (764)
-.|||||++++++...+++.+..++ ++.+.+++++|+++-.....+-....... ........++....++++.+.
T Consensus 7 ~k~ILv~~D~s~~s~~al~~A~~lA-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~ 81 (319)
T 3olq_A 7 YQNLLVVIDPNQDDQPALRRAVYIV-QRNGGRIKAFLPVYDLSYDMTTLLSPDER----NAMRKGVINQKTAWIKQQARY 81 (319)
T ss_dssp SCEEEEECCTTCSCCHHHHHHHHHH-HHHCCEEEEEEEECCGGGGCTTTSCHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCcccHHHHHHHHHHH-HHcCCeEEEEEEecccchhhccccChhhH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999995 56678999999976321100000000000 000000111222333333322
Q ss_pred c-CCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEEeecCCCCCCCc
Q 041687 515 Q-KGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGILYYRGLFMDPKP 590 (764)
Q Consensus 515 ~-~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIlvdrg~~~~~~~ 590 (764)
. ..+++++..... ..+..+.|++.|+++++||||||+|+.+ +..+|++.++|++++||||.++.++...
T Consensus 82 ~~~~~v~~~~~~~~--~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~----- 154 (319)
T 3olq_A 82 YLEAGIQIDIKVIW--HNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDKEWP----- 154 (319)
T ss_dssp HHHTTCCEEEEEEE--CSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESSCCC-----
T ss_pred HhhcCCeEEEEEEe--cCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCcccc-----
Confidence 1 245666665542 3789999999999999999999999843 5568999999999999999887543211
Q ss_pred ccccCcceeEEEeeccCcc-------hHHHHHHHHHHhhCC--CeEEEEEEeeecCCCCC-----CCc---ch---hhhH
Q 041687 591 IFSRQLTISVCVLFIGGPD-------DREALAYGARMVENH--SIMLTIIRFIAMNHTTN-----DNL---IE---ESCD 650 (764)
Q Consensus 591 ~~~~~~~~~i~~~f~gG~d-------dreAl~~a~rma~~~--~v~ltvlr~~~~~~~~~-----~~~---~e---~~~d 650 (764)
..++|++++.|+++ ++.|+++|.++|+.. +++++++++.++..... ..+ .. ++..
T Consensus 155 -----~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (319)
T 3olq_A 155 -----EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQH 229 (319)
T ss_dssp -----TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHH
T ss_pred -----cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHH
Confidence 25799999999996 499999999999987 99999999986532210 000 11 1122
Q ss_pred HHHHHHHHhcccCC-CcEEEEEeeecChhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcC
Q 041687 651 LNMINGFRMTCINN-SNVEYITRSIKDGAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASS 729 (764)
Q Consensus 651 ~~~~~e~~~~~~~~-~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~ 729 (764)
++.++++..++... ......+-.. ..++.+++++. ++||++||+++.. |+.+| -+|-+.+-+...
T Consensus 230 ~~~l~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~--~~dLiV~G~~g~~------~~~~~----~~Gsv~~~vl~~ 295 (319)
T 3olq_A 230 LIAMKELRQKFSIPEEKTHVKEGLP--EQVIPQVCEEL--NAGIVVLGILGRT------GLSAA----FLGNTAEQLIDH 295 (319)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEESCH--HHHHHHHHHHT--TEEEEEEECCSCC------STHHH----HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccEEEecCCc--HHHHHHHHHHh--CCCEEEEeccCcc------CCccc----cccHHHHHHHhh
Confidence 44455555443211 1122222211 23455555544 8999999998632 12121 377777777755
Q ss_pred CCCCcccEEEEeecc
Q 041687 730 HCASRASIMVIQQQA 744 (764)
Q Consensus 730 d~~~~~svLvvqq~~ 744 (764)
++++||||+.+.
T Consensus 296 ---~~~pVLvv~~~~ 307 (319)
T 3olq_A 296 ---IKCDLLAIKPDG 307 (319)
T ss_dssp ---CCSEEEEECCTT
T ss_pred ---CCCCEEEECCCC
Confidence 678999998764
No 4
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.71 E-value=1.3e-16 Score=169.30 Aligned_cols=264 Identities=13% Similarity=0.053 Sum_probs=172.6
Q ss_pred cceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCC-CCCCCCCchhHHHHHHHHhH
Q 041687 435 ELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEP-SSSKPSKIDPMINALRRYKH 513 (764)
Q Consensus 435 e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~af~~~~~ 513 (764)
-.|||+|++++++...+++.+..++ ++.+.+++++|+++.+...... ..... .. ........++.++.+.+..+
T Consensus 22 ~~~ILv~vD~s~~s~~al~~A~~lA-~~~~a~l~ll~v~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~l~~~~~~~~ 96 (294)
T 3loq_A 22 SNAMLLPTDLSENSFKVLEYLGDFK-KVGVEEIGVLFVINLTKLSTVS--GGIDI--DHYIDEMSEKAEEVLPEVAQKIE 96 (294)
T ss_dssp TCEEEEECCSCTGGGGGGGGHHHHH-HTTCCEEEEECCEECTTC-------CCCT--THHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccEEEecCCCHHHHHHHHHHHHHH-hhcCCEEEEEEEecCccccccc--ccccH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999995 6778999999998865322100 00000 00 00001112333333333333
Q ss_pred hcCCCeEEEE-EEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEEeecCCCCCCC
Q 041687 514 YQKGLKSVHC-FTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGILYYRGLFMDPK 589 (764)
Q Consensus 514 ~~~~~v~v~~-~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIlvdrg~~~~~~ 589 (764)
. .+++++. .+. ...+..+.| .|+++++|+||||.|+.+ +..+|++.++|++++||||.++.+....
T Consensus 97 ~--~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~---- 166 (294)
T 3loq_A 97 A--AGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHDMVV---- 166 (294)
T ss_dssp H--TTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCCTTT----
T ss_pred H--cCCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecCcccc----
Confidence 2 4577766 222 136788999 999999999999999854 4567999999999999999887443311
Q ss_pred cccccCcceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEE
Q 041687 590 PIFSRQLTISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEY 669 (764)
Q Consensus 590 ~~~~~~~~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y 669 (764)
....++|++++.|++++++|+++|.++++..+.+++++++.++.. .++.-+++.+.++.. +. .+.+
T Consensus 167 ----~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-------~~~~l~~~~~~l~~~--~~-~~~~ 232 (294)
T 3loq_A 167 ----NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-------KTADLRVMEEVIGAE--GI-EVHV 232 (294)
T ss_dssp ----TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-------CHHHHHHHHHHHHHT--TC-CEEE
T ss_pred ----CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-------HHHHHHHHHHHHHHc--CC-cEEE
Confidence 022579999999999999999999999999999999999985532 122333444444432 11 1222
Q ss_pred EEeeecChhhHHHHHHhhc--CCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEeecc
Q 041687 670 ITRSIKDGAETAGVLNAIG--DDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQQQA 744 (764)
Q Consensus 670 ~e~~V~~g~~~~~~i~~~~--~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvqq~~ 744 (764)
.+..| +..+.|.+.+ .++||+++|+++.. ++.+| -+|-..+-+... ++++||||.++.
T Consensus 233 ---~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~------~~~~~----~~Gs~~~~vl~~---~~~pvLvv~~~~ 292 (294)
T 3loq_A 233 ---HIESG-TPHKAILAKREEINATTIFMGSRGAG------SVMTM----ILGSTSESVIRR---SPVPVFVCKRGD 292 (294)
T ss_dssp ---EEECS-CHHHHHHHHHHHTTCSEEEEECCCCS------CHHHH----HHHCHHHHHHHH---CSSCEEEECSCT
T ss_pred ---EEecC-CHHHHHHHHHHhcCcCEEEEeCCCCC------Cccce----eeCcHHHHHHhc---CCCCEEEECCCC
Confidence 23333 3334433332 37999999998632 12121 267777666654 678999998753
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.70 E-value=2.2e-16 Score=168.88 Aligned_cols=277 Identities=16% Similarity=0.149 Sum_probs=174.5
Q ss_pred ccceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCC-ch-hhccccccCCCCCCCCCCchhHHHHHHH-
Q 041687 434 SELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYT-PV-VIQHRLDSLEPSSSKPSKIDPMINALRR- 510 (764)
Q Consensus 434 ~e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~i~~af~~- 510 (764)
...|||+|++++++...+++.+..++ ++.+.+++++|+++ +.... +. ....+.. .......++.++.+.+
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA-~~~~a~l~ll~v~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 90 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDA-ELRKIPLTLVHAVS-PEVATWLEVPLPPGVL-----RWQQDHGRHLIDDALKV 90 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHH-HHHTCCEEEEEECC-CCCCCTTCCCCCHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHH-HhcCCcEEEEEEec-CcccccccCCCCchhh-----HHHHHHHHHHHHHHHHH
Confidence 35789999999999999999998885 55678999999987 32110 00 0000000 0000111222322222
Q ss_pred HhHhc--CCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEEeecCCC
Q 041687 511 YKHYQ--KGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGILYYRGLF 585 (764)
Q Consensus 511 ~~~~~--~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIlvdrg~~ 585 (764)
+++.. ..+++++..+. ..+..+.|++.|+ ++|+||||.|+.+ +..+|++.++|++++||||.++..+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~---~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~ 165 (309)
T 3cis_A 91 VEQASLRAGPPTVHSEIV---PAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDSV 165 (309)
T ss_dssp HHHHCSSSCCSCEEEEEE---SSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTTCCC
T ss_pred HHHhcccCCCceEEEEEe---cCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcCCccc
Confidence 22210 12566666544 4789999999996 8999999999843 5578999999999999999887543321
Q ss_pred CCCCcccccCcceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCC--CCCcch--hhhHHHHHHHHHhcc
Q 041687 586 MDPKPIFSRQLTISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTT--NDNLIE--ESCDLNMINGFRMTC 661 (764)
Q Consensus 586 ~~~~~~~~~~~~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~--~~~~~e--~~~d~~~~~e~~~~~ 661 (764)
. .....++|++++.|+++++.|+++|.++|+..+.+++++++.++.... ...+.+ .+..++.++++....
T Consensus 166 ~------~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 239 (309)
T 3cis_A 166 M------PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGW 239 (309)
T ss_dssp S------CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTH
T ss_pred C------CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 0 012257999999999999999999999999999999999998653211 001111 112233344433221
Q ss_pred cC-CCcEEEEEeeecChhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEE
Q 041687 662 IN-NSNVEYITRSIKDGAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVI 740 (764)
Q Consensus 662 ~~-~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvv 740 (764)
.. ...+.+ +..+..| +..+.|.+.++++||++||+++.. ++.+| -+|-+.+-+... ++++||||
T Consensus 240 ~~~~~~~~~-~~~~~~g-~~~~~I~~~a~~adliV~G~~~~~------~~~~~----l~Gsv~~~vl~~---~~~pVlvv 304 (309)
T 3cis_A 240 QERYPNVAI-TRVVVRD-QPARQLVQRSEEAQLVVVGSRGRG------GYAGM----LVGSVGETVAQL---ARTPVIVA 304 (309)
T ss_dssp HHHCTTSCE-EEEEESS-CHHHHHHHHHTTCSEEEEESSCSS------CCTTC----SSCHHHHHHHHH---CSSCEEEE
T ss_pred HhhCCCCcE-EEEEEcC-CHHHHHHHhhCCCCEEEECCCCCC------Ccccc----ccCcHHHHHHhc---CCCCEEEe
Confidence 00 011222 2223445 466666666668999999998632 22222 367777777655 57899999
Q ss_pred eec
Q 041687 741 QQQ 743 (764)
Q Consensus 741 qq~ 743 (764)
..+
T Consensus 305 ~~~ 307 (309)
T 3cis_A 305 RES 307 (309)
T ss_dssp CC-
T ss_pred CCC
Confidence 764
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.69 E-value=1.7e-16 Score=166.06 Aligned_cols=252 Identities=10% Similarity=0.078 Sum_probs=166.9
Q ss_pred ceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCC------------CCCchh
Q 041687 436 LRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSK------------PSKIDP 503 (764)
Q Consensus 436 ~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 503 (764)
.|||+|++++++...+++.+..++ ++.+.+++++|+++..... ..-..... ..... ....++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA-~~~~a~l~ll~v~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLA-YKLSAPLTVLFVVDTRLAR--IPELLDFG---ALTVPVPVLRTELERALALRGEA 74 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHH-HHHTCCEEEEEEEEHHHHT--HHHHC----------CHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHH-HHhCCcEEEEEEeccCCcc--cccccCch---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999985 5567899999998754211 00000000 00000 011122
Q ss_pred HHHHHHHHhHhcCCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEecccc-C-C--ChhhHHHHHHhhhcCCcceEEE
Q 041687 504 MINALRRYKHYQKGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKR-A-D--SPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 504 i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~-s-~--~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
.++.+.+..+. .+++++..+. ..+..+.|++. ++++|+||||.|+ + . +..+|++.++|++++||||.++
T Consensus 75 ~l~~~~~~~~~--~g~~~~~~~~---~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv 147 (268)
T 3ab8_A 75 VLERVRQSALA--AGVAVEAVLE---EGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLA 147 (268)
T ss_dssp HHHHHHHHHHH--TTCCEEEEEE---EECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHh--CCCCeEEEEe---cCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEE
Confidence 33333332222 3456665544 36889999999 8899999999998 4 3 4578999999999999999886
Q ss_pred eecCCCCCCCcccccCcceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHh
Q 041687 580 YYRGLFMDPKPIFSRQLTISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRM 659 (764)
Q Consensus 580 vdrg~~~~~~~~~~~~~~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~ 659 (764)
..+.. ..++|++++.|+++++.|+++|.++|+..+++++++++.++.. + .++.-++..+.++.
T Consensus 148 ~~~~~-----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~-----~-~~~~l~~~~~~l~~ 210 (268)
T 3ab8_A 148 PGEPV-----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA-----R-AEAWALEAEAYLRD 210 (268)
T ss_dssp CSSCC-----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH-----H-HHHHHHHHHHHHHH
T ss_pred CCCCC-----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH-----H-HHHHHHHHHHHHHH
Confidence 43221 1469999999999999999999999999999999999975421 1 11122333333433
Q ss_pred cccCCCcEEEEEeeecChhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEE
Q 041687 660 TCINNSNVEYITRSIKDGAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMV 739 (764)
Q Consensus 660 ~~~~~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLv 739 (764)
. + -.+. ..+.+| +..+.|.+.++++||++||+ |+.+| -+|-..+-+... ++++|||
T Consensus 211 ~--~-~~~~---~~~~~g-~~~~~i~~~a~~~dliV~G~----------~~~~~----~~Gs~~~~vl~~---~~~pvlv 266 (268)
T 3ab8_A 211 H--G-VEAS---ALVLGG-DAADHLLRLQGPGDLLALGA----------PVRRL----VFGSTAERVIRN---AQGPVLT 266 (268)
T ss_dssp T--T-CCEE---EEEECS-CHHHHHHHHCCTTEEEEEEC----------CCSCC----SSCCHHHHHHHH---CSSCEEE
T ss_pred c--C-CceE---EEEeCC-ChHHHHHHHHHhCCEEEECC----------ccccc----EeccHHHHHHhc---CCCCEEE
Confidence 2 1 1222 223345 46677766666669999999 23222 367777776655 6789999
Q ss_pred Ee
Q 041687 740 IQ 741 (764)
Q Consensus 740 vq 741 (764)
|.
T Consensus 267 v~ 268 (268)
T 3ab8_A 267 AR 268 (268)
T ss_dssp EC
T ss_pred eC
Confidence 84
No 7
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.14 E-value=4.6e-11 Score=111.89 Aligned_cols=136 Identities=18% Similarity=0.187 Sum_probs=94.2
Q ss_pred ceeEEEeeCCCC--hHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhH
Q 041687 436 LRILACINDPDN--VATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKH 513 (764)
Q Consensus 436 ~rILvcv~~~e~--~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 513 (764)
.|||+|++++++ ...+++.+..++ +..+.+++++|+++.+........... ..........++..+.++++.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~ 76 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEA-RIDDAEVHFLTVIPSLPYYASLGMAYT----AELPGMDELREGSETQLKEIAK 76 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHH-HHHTCEEEEEEEECC--------------------CHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHH-HhcCCeEEEEEEecCCccccccccccc----chhhhHHHHHHHHHHHHHHHHH
Confidence 589999999999 999999998885 556789999999986532211110000 0000011223455566666655
Q ss_pred hcC-CCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC--ChhhHHHHHHhhhcCCcceEEE
Q 041687 514 YQK-GLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD--SPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 514 ~~~-~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~--~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
... ..+.++..+. ..+..+.|++.|+++++||||||.|++. +..+|++.++|++++||||.|+
T Consensus 77 ~~~~~~~~v~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 77 KFSIPEDRMHFHVA---EGSPKDKILALAKSLPADLVIIASHRPDITTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp TSCCCGGGEEEEEE---ESCHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSCHHHHHHHHHCSSEEEEE
T ss_pred HcCCCCCceEEEEE---ecChHHHHHHHHHHhCCCEEEEeCCCCCCeeeeeccHHHHHHHhCCCCEEEe
Confidence 432 2344555544 3689999999999999999999999844 5678999999999999999875
No 8
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.04 E-value=1.9e-10 Score=108.05 Aligned_cols=134 Identities=11% Similarity=0.147 Sum_probs=92.8
Q ss_pred cceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchh--hccccccCCCCCCCCCCchhHHHHHHHHh
Q 041687 435 ELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVV--IQHRLDSLEPSSSKPSKIDPMINALRRYK 512 (764)
Q Consensus 435 e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 512 (764)
-.|||+|++++++...+++.+..++ ++.+.+++++|+++.+....... ...+.. .......++.++.+.+..
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 78 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIA-QRHQANLTALYVVDDSAYHTPALDPVLSELL-----DAEAAHAKDAMRQRQQFV 78 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHH-HHHTCEEEEEEEEECCCCCCGGGHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHH-HhcCCEEEEEEEecCccccccccccccHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999885 55678999999998654322110 000000 000111223333333322
Q ss_pred HhcCCCe-EEEEEEEeccCCChHHHHHH-HHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEE
Q 041687 513 HYQKGLK-SVHCFTAVAPFASMHDDICL-MAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 513 ~~~~~~v-~v~~~t~vs~~~~m~~dI~~-~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
+. .++ .++..+. ..+..+.|++ .|++.++||||||.|+.+ +..+|++.++|++++||||.|+
T Consensus 79 ~~--~g~~~~~~~~~---~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 79 AT--TSAPNLKTEIS---YGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp TT--SSCCCCEEEEE---EECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEE
T ss_pred Hh--cCCcceEEEEe---cCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEe
Confidence 22 345 5555544 3579999999 999999999999999843 5678999999999999999875
No 9
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.03 E-value=8.8e-10 Score=105.54 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=91.9
Q ss_pred cceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccC----CCCchhhccc--c-ccCCC----CCCCCCCchh
Q 041687 435 ELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVG----RYTPVVIQHR--L-DSLEP----SSSKPSKIDP 503 (764)
Q Consensus 435 e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~----~~~~~~~~~~--~-~~~~~----~~~~~~~~~~ 503 (764)
-.|||+|++.+++...+++.+..++ +..+.+++++|+++... ...+.. ... . . .. ........++
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~ 80 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFK-TLKAEEVILLHVIDEREIKKRDIFSLL-LGVAGLNK--SVEEFENELKNKLTEE 80 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTC-CSSCCEEEEEEEEEGGGTC--------------------CHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHH-hhcCCeEEEEEEecCcccccccccccc-cccccccc--chhhhHHHHHHHHHHH
Confidence 3589999999999999999999995 67789999999987431 000000 000 0 0 00 0000000112
Q ss_pred HHHHHHHHhHhc-CCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEE
Q 041687 504 MINALRRYKHYQ-KGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 504 i~~af~~~~~~~-~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
..+.++++.+.. ..+++++..+. ..+..+.|++.|+++++|+||||.|+.+ +..+|++.++|++++||||.|+
T Consensus 81 ~~~~l~~~~~~~~~~g~~~~~~v~---~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv 157 (162)
T 1mjh_A 81 AKNKMENIKKELEDVGFKVKDIIV---VGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVV 157 (162)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEE---EECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHHHHHcCCceEEEEc---CCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEE
Confidence 222333332211 14566665544 3689999999999999999999999843 5678999999999999999987
Q ss_pred e
Q 041687 580 Y 580 (764)
Q Consensus 580 v 580 (764)
.
T Consensus 158 ~ 158 (162)
T 1mjh_A 158 K 158 (162)
T ss_dssp C
T ss_pred e
Confidence 4
No 10
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.03 E-value=1e-10 Score=109.89 Aligned_cols=136 Identities=11% Similarity=0.040 Sum_probs=90.9
Q ss_pred ceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchh--hccccccCCCCCCCCCCchhHHHHHHHHhH
Q 041687 436 LRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVV--IQHRLDSLEPSSSKPSKIDPMINALRRYKH 513 (764)
Q Consensus 436 ~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 513 (764)
.|||+|++++++...+++.+..++ ++.+.+++++|+++.+....... ...... ...........++.++.+.+..+
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~ 80 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQ-QLTGAELYILCVFKHHSLLEASLSMARPEQL-DIPDDALKDYATEIAVQAKTRAT 80 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHH-HHHCCEEEEEEEECCHHHHHHTBSSCCCGGG-CCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHH-HhcCCEEEEEEEecCcccccccccccChhhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999985 55678999999998543100000 000000 00000001122333444443333
Q ss_pred hcCCCeEE---EEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEE
Q 041687 514 YQKGLKSV---HCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGI 578 (764)
Q Consensus 514 ~~~~~v~v---~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgI 578 (764)
. .++++ +..+. ..+..+.|++.|+++++||||||.|+.+ +..+|++.++|++++||||.|
T Consensus 81 ~--~g~~~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 81 E--LGVPADKVRAFVK---GGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp H--TTCCGGGEEEEEE---ESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEE
T ss_pred h--cCCCccceEEEEe---cCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEE
Confidence 3 34444 44433 3689999999999999999999999833 567899999999999999976
No 11
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.03 E-value=6e-10 Score=106.44 Aligned_cols=128 Identities=13% Similarity=0.045 Sum_probs=92.2
Q ss_pred ccceeEEEeeC-CCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHh
Q 041687 434 SELRILACIND-PDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYK 512 (764)
Q Consensus 434 ~e~rILvcv~~-~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 512 (764)
.-.|||+|++. +++...+++.+..++ +..+.+++++|+++.+..... +. ....++.++.+.+..
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la-~~~~a~l~llhV~~~~~~~~~-----~~---------~~~~~~~l~~~~~~~ 87 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEA-RLRGVPVYVVHSLPGGGRTKD-----ED---------IIEAKETLSWAVSII 87 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHH-HHHTCCEEEEEEECCSTTSCH-----HH---------HHHHHHHHHHHHHHH
T ss_pred ccCeEEEEECCCCHHHHHHHHHHHHHH-HhcCCEEEEEEEEcCCCcccH-----HH---------HHHHHHHHHHHHHHH
Confidence 34689999999 999999999999985 556789999999884432110 00 011233444433333
Q ss_pred HhcCCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEE
Q 041687 513 HYQKGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 513 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
+. .++.++..+.+. ..+..+.|++.|++.++||||||.|+.+ +..+|++.++|+++|||||.|+
T Consensus 88 ~~--~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 88 RK--EGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp HH--TTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEE
T ss_pred Hh--cCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEe
Confidence 33 234444333332 4789999999999999999999999833 5578999999999999999876
No 12
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.02 E-value=9.8e-10 Score=105.87 Aligned_cols=137 Identities=11% Similarity=0.057 Sum_probs=92.3
Q ss_pred ccceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEE--EeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHH
Q 041687 434 SELRILACINDPDNVATILNIIQTSNSPQSPIAVCFM--NLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRY 511 (764)
Q Consensus 434 ~e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~l--hlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 511 (764)
.-.|||+|++.+++...+++.+..++ + .+.+++++ |+++.+....+.... .. ..........++.++.+.+.
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA-~-~~a~l~ll~a~v~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~l~~~~~~ 89 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIA-G-ADAKLIIASAYLPQHEDARAADILK-DE---SYKVTGTAPIYEILHDAKER 89 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHH-T-TTSEEEEEEECCC------------------------CCTHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHh-C-CCCEEEEEEeeeccCcccccccccc-cH---HHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999995 6 88999999 887644210111000 00 00011122334444444443
Q ss_pred hHhcCCCeE-EEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEEee
Q 041687 512 KHYQKGLKS-VHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGILYY 581 (764)
Q Consensus 512 ~~~~~~~v~-v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIlvd 581 (764)
.+. .+++ ++..+. ..+..+.|++.|++.++||||||.|+.+ +..+||+.++|+++|||||.|+..
T Consensus 90 ~~~--~gv~~v~~~v~---~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~~ 158 (163)
T 1tq8_A 90 AHN--AGAKNVEERPI---VGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHT 158 (163)
T ss_dssp HHT--TTCCEEEEEEE---CSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECC
T ss_pred HHH--cCCCeEEEEEe---cCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEeC
Confidence 332 3455 665544 4689999999999999999999999844 557899999999999999998743
No 13
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.99 E-value=3.1e-10 Score=107.15 Aligned_cols=139 Identities=9% Similarity=0.110 Sum_probs=88.6
Q ss_pred cceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHh
Q 041687 435 ELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHY 514 (764)
Q Consensus 435 e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 514 (764)
-.|||+|++++++...+++.+..++ ++.+.+++++|+++......+........ ..........++..+.++++.++
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~ 82 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLA-SQIGARLSLIHVLDNIPMPDTPYGTAIPL--DTETTYDAMLDVEKQKLSQIGNT 82 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHH-HHHTCEEEEEEEEC--------CTTCCCS--SSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHH-hhcCCEEEEEEEEcCccccccccccccCc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999995 55679999999987542210000000000 00000111224445566666554
Q ss_pred cCCCeE-EEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC--ChhhHHHHHHhhhcCCcceEEEee
Q 041687 515 QKGLKS-VHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD--SPQIRTVTKNVIKLAPCSVGILYY 581 (764)
Q Consensus 515 ~~~~v~-v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~--~~~~~~~n~~Vl~~ApCsVgIlvd 581 (764)
.+ +. ++.... ..+..+.|++.|+++++|+||||.|+.+ ...+|++.++|++++||||.|+..
T Consensus 83 ~~--~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 83 LG--IDPAHRWLV---WGEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp HT--CCGGGEEEE---ESCHHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEEEC
T ss_pred cC--CCcceEEEe---cCCHHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEEeC
Confidence 32 22 122222 3689999999999999999999999833 356799999999999999998754
No 14
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.98 E-value=1e-09 Score=106.09 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=91.8
Q ss_pred cceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCch-hhcc---ccccCCCCCCCCCCchhHHHHHHH
Q 041687 435 ELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPV-VIQH---RLDSLEPSSSKPSKIDPMINALRR 510 (764)
Q Consensus 435 e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~i~~af~~ 510 (764)
-.|||+|++.+++...+++.+..++ ++.+.+++++|+++........ -... ... ...........++..+.+++
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 82 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRN-KMEVGEVILLHVIDEGTLEELMDGYSFFYDNAE-IELKDIKEKLKEEASRKLQE 82 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHC-CSCCSEEEEEEEEETTGGGCCC-------------CCTTSHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHH-HhcCCEEEEEEEecCcccccccccccccccccc-ccHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999995 6778999999998743211000 0000 000 00000000011222233333
Q ss_pred HhHhc-CCCeEEEE--EEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEEeec
Q 041687 511 YKHYQ-KGLKSVHC--FTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGILYYR 582 (764)
Q Consensus 511 ~~~~~-~~~v~v~~--~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIlvdr 582 (764)
+.+.. ..++.++. .+. ..+..+.|++.|+++++||||||.|+.+ +..+|++.++|++++||||.|+.++
T Consensus 83 ~~~~~~~~g~~~~~~~~~~---~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~~~ 157 (170)
T 2dum_A 83 KAEEVKRAFRAKNVRTIIR---FGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKEV 157 (170)
T ss_dssp HHHHHHHHTTCSEEEEEEE---EECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHHHcCCceeeeeEEe---cCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEccC
Confidence 32211 12344444 333 3689999999999999999999999843 5678999999999999999987544
No 15
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.98 E-value=3.9e-10 Score=104.95 Aligned_cols=130 Identities=11% Similarity=0.079 Sum_probs=89.1
Q ss_pred ceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHhc
Q 041687 436 LRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHYQ 515 (764)
Q Consensus 436 ~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 515 (764)
.|||+|++++++...+++.+..++ +..+.+++++|+++-. .. +. .... .........++..+.++++.+..
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la-~~~~a~l~ll~v~~~~-~~-~~---~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 73 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEA-EAHGARLIVVHAYEPV-PD-YL---GEPF---FEEALRRRLERAEGVLEEARALT 73 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHH-HHHTCEEEEEEEECC----------------------CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHH-hhcCCEEEEEEEecCC-Cc-cc---cccc---hHHHHHHHHHHHHHHHHHHHHHc
Confidence 589999999999999999998885 5567899999998722 11 11 0000 00001111234444555555432
Q ss_pred CCCe-EEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEE
Q 041687 516 KGLK-SVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 516 ~~~v-~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
++ +++..+. ..+..+.|++.|+++++|+||||.|+.+ +..+|++.++|++++||||.|+
T Consensus 74 --g~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 74 --GVPKEDALLL---EGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp --CCCGGGEEEE---ESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEE
T ss_pred --CCCccEEEEE---ecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEe
Confidence 23 3333332 3689999999999999999999999833 5678999999999999999875
No 16
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.96 E-value=1.6e-09 Score=101.09 Aligned_cols=134 Identities=10% Similarity=0.110 Sum_probs=90.6
Q ss_pred ceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeec-ccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHh
Q 041687 436 LRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEE-YVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHY 514 (764)
Q Consensus 436 ~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlve-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 514 (764)
.|||+|++++++...+++.+..++ +..+.+++++|+++ .+....... ..... .......++..+.++++.+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~l~~~~~~ 75 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIA-KRHDAKLSIIHVDVNFSDLYTGLI-DVNMS-----SMQDRISTETQKALLDLAES 75 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHH-HHHTCEEEEEEEEECCGGGCCCCE-EHHHH-----HHTTCCCCHHHHHHHHHHHH
T ss_pred ceEEEEecCchhhHHHHHHHHHHH-HhcCCEEEEEEEecCchhhhcccc-ccchH-----HHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999998885 55678999999984 232111100 00000 00011224455556666554
Q ss_pred cCCCeEE-EEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC-ChhhHHHHHHhhhcCCcceEEEeec
Q 041687 515 QKGLKSV-HCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD-SPQIRTVTKNVIKLAPCSVGILYYR 582 (764)
Q Consensus 515 ~~~~v~v-~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~-~~~~~~~n~~Vl~~ApCsVgIlvdr 582 (764)
. ++.+ +..+. ..+..+.|++.|++.++|+||||.| .+ -..+|++.++|++++||||.|+..+
T Consensus 76 ~--~~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~lgs~~~~vl~~~~~pVlvv~~~ 139 (141)
T 1jmv_A 76 V--DYPISEKLSG---SGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMSSTRQVMNTIKIDMLVVPLR 139 (141)
T ss_dssp S--SSCCCCEEEE---EECHHHHHHHHHHHTTCCEEEEEEC-CCCHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred c--CCCceEEEEe---cCCHHHHHHHHHHhcCCCEEEEeCC-CchhhhhcchHHHHHhcCCCCEEEeeCC
Confidence 2 2332 22222 3678999999999999999999999 54 2226999999999999999987543
No 17
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.94 E-value=4.1e-10 Score=107.23 Aligned_cols=136 Identities=13% Similarity=0.023 Sum_probs=91.2
Q ss_pred ccceeEEEee--CCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHH
Q 041687 434 SELRILACIN--DPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRY 511 (764)
Q Consensus 434 ~e~rILvcv~--~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 511 (764)
.-.|||+|++ ++++...+++.+..++ +..+.+++++|+++............+.. .......++.++.+.+.
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 87 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLA-HDYDVPLGICSVLESEDINIFDSLTPSKI-----QAKRKHVEDVVAEYVQL 87 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHH-HHHTCCEEEEEEECCCCTTCCCSSHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHH-HhcCCEEEEEEEEeCCCccccccCCHHHH-----HHHHHHHHHHHHHHHHH
Confidence 4568999999 9999999999999885 55678999999998653211000000000 00011123333333332
Q ss_pred hHhcCCCe-EEEEEEEeccCCChHHHHHHH-HHhcCccEEEeccccCC--ChhhHHHHHHhhhcCCcceEEE
Q 041687 512 KHYQKGLK-SVHCFTAVAPFASMHDDICLM-AFEKCTALVILPFKRAD--SPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 512 ~~~~~~~v-~v~~~t~vs~~~~m~~dI~~~-A~e~~adlIIlp~h~s~--~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
.+. .++ .++..+.. ..+..+.|++. |+++++||||||.|+.+ +..+|++.++|+++|||||.|+
T Consensus 88 ~~~--~g~~~~~~~v~~--~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 88 AEQ--RGVNQVEPLVYE--GGDVDDVILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp HHH--HTCSSEEEEEEE--CSCHHHHHHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHCSSEEEEE
T ss_pred HHH--cCCCceEEEEEe--CCCHHHHHHHHHHHhcCCCEEEECCCCCCccceeecchHHHHHHhCCCCEEEe
Confidence 222 234 35555442 26899999999 99999999999999833 4578999999999999999875
No 18
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.93 E-value=3.5e-09 Score=102.83 Aligned_cols=141 Identities=9% Similarity=0.084 Sum_probs=87.2
Q ss_pred cceeEEEeeCCC---------ChHHHHHHHHhcCCCC--CCceEEEEEeecccCCCCc----hhh-ccccccCCCCCCCC
Q 041687 435 ELRILACINDPD---------NVATILNIIQTSNSPQ--SPIAVCFMNLEEYVGRYTP----VVI-QHRLDSLEPSSSKP 498 (764)
Q Consensus 435 e~rILvcv~~~e---------~~~~li~l~~~~~~~~--s~~~v~~lhlvel~~~~~~----~~~-~~~~~~~~~~~~~~ 498 (764)
-.|||+|++.++ ....+++.+..+..+. ...+++++|+++....... ... ....+ ....
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 79 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFR-----DMRQ 79 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHH-----HHTT
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHH-----HHHH
Confidence 468999999999 8899999998864233 5789999999864321100 000 00000 0000
Q ss_pred CCchhHHHHHHHHhHhc-CCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCc
Q 041687 499 SKIDPMINALRRYKHYQ-KGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPC 574 (764)
Q Consensus 499 ~~~~~i~~af~~~~~~~-~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApC 574 (764)
...++....++++.+.. ..+++++..+. ..+..+.|++.|+++++||||||.|+.+ +..+|++.++|++++||
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~g~~~~~~v~---~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~ 156 (175)
T 2gm3_A 80 SNKAKGLHLLEFFVNKCHEIGVGCEAWIK---TGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAEC 156 (175)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCEEEEEEE---ESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCceEEEEe---cCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCC
Confidence 11112222333332211 13466665544 3689999999999999999999999843 56789999999999999
Q ss_pred ceEEEeecC
Q 041687 575 SVGILYYRG 583 (764)
Q Consensus 575 sVgIlvdrg 583 (764)
||.|+..+.
T Consensus 157 pVlvv~~~~ 165 (175)
T 2gm3_A 157 PVMTIKRNA 165 (175)
T ss_dssp CEEEEECCG
T ss_pred CEEEEcCCc
Confidence 999986554
No 19
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.91 E-value=7e-10 Score=103.15 Aligned_cols=131 Identities=12% Similarity=0.056 Sum_probs=90.3
Q ss_pred ceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhh-ccccccCCCCCCCC-CCchhHHHHHHHHhH
Q 041687 436 LRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVI-QHRLDSLEPSSSKP-SKIDPMINALRRYKH 513 (764)
Q Consensus 436 ~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~i~~af~~~~~ 513 (764)
.|||+|++++++...+++.+..++.++.+.+++++|+++.+........ ..+.. .... ...++.++.+.+..+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~ 76 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEI-----EMKEEEKAKLLTQKFSTFFT 76 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999942678899999999986543211000 00000 0000 122333333333333
Q ss_pred hcCCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEE
Q 041687 514 YQKGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 514 ~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
. .+++++..+. ..+..+.|++.|+ ++||||||.|+.+ +.. |++.++|++++||||.|+
T Consensus 77 ~--~g~~~~~~v~---~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 77 E--KGINPFVVIK---EGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp T--TTCCCEEEEE---ESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEE
T ss_pred H--CCCCeEEEEe---cCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEe
Confidence 2 4566665544 3689999999999 9999999999833 455 999999999999999875
No 20
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.75 E-value=2.6e-08 Score=92.51 Aligned_cols=129 Identities=9% Similarity=-0.013 Sum_probs=84.3
Q ss_pred cceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEee-cc-cCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHh
Q 041687 435 ELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLE-EY-VGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYK 512 (764)
Q Consensus 435 e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlv-el-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 512 (764)
-.|||+|++++++...+++.+..++ ++.+.+++++|++ +. +.. +........ ..........++..+.++++
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~- 77 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFS-EKLGAELDILAVLEDVYNLE--RANVTFGLP--FPPEIKEESKKRIERRLREV- 77 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHH-TTTCCEEEEEEECHHHHHHH--HHHHHHCCC--CCTHHHHHHHHHHHHHHHHH-
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHH-HHcCCeEEEEEEeccccccc--ccccccCCC--CChHHHHHHHHHHHHHHHHH-
Confidence 3589999999999999999999985 6778999999998 63 210 000000000 00000000112222333333
Q ss_pred Hh---cCCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCCChhhHHHHHHhhhcCCcceEEE
Q 041687 513 HY---QKGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRADSPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 513 ~~---~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
+. ...+ +++..+. ..+..+.|++.|+++++||||||.|+. ++.++|++++||||.|+
T Consensus 78 ~~~~~~~~~-~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~g~------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 78 WEKLTGSTE-IPGVEYR---IGPLSEEVKKFVEGKGYELVVWACYPS------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp HHHHHSCCC-CCCEEEE---CSCHHHHHHHHHTTSCCSEEEECSCCG------GGTHHHHHHSSSEEEEC
T ss_pred HHHhhccCC-cceEEEE---cCCHHHHHHHHHHhcCCCEEEEeCCCC------chHHHHHHhCCCceEee
Confidence 22 1222 3444333 478999999999999999999999864 89999999999999874
No 21
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.55 E-value=8.1e-08 Score=101.14 Aligned_cols=135 Identities=11% Similarity=-0.046 Sum_probs=91.0
Q ss_pred ccceeEEEeeCCCC-------hHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHH
Q 041687 434 SELRILACINDPDN-------VATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMIN 506 (764)
Q Consensus 434 ~e~rILvcv~~~e~-------~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 506 (764)
...|||+|++.+++ ...+++.+..++ +..+.+++++|+.+.+..... .+... ......++..+
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~--~~~~~-------~~~~~~~~~~~ 202 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIA-GLAKATLHVISAHPSPMLSSA--DPTFQ-------LSETIEARYRE 202 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHH-HHTTCEEEEEEEEC-----------CHH-------HHHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHH-HHcCCeEEEEEEecCcccccc--CchhH-------HHHHHHHHHHH
Confidence 45789999999998 888898888885 566799999999885432110 00000 00011233344
Q ss_pred HHHHHhHhcCCCeE-EEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEEeec
Q 041687 507 ALRRYKHYQKGLKS-VHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGILYYR 582 (764)
Q Consensus 507 af~~~~~~~~~~v~-v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIlvdr 582 (764)
.++++.++. ++. ++.... ..+..+.|++.|+++++||||||.|+.+ +..+||+.++|++++||||.++..+
T Consensus 203 ~l~~~~~~~--g~~~~~~~v~---~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 203 ACRTFQAEY--GFSDEQLHIE---EGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVLKPD 277 (290)
T ss_dssp HHHHHHHHH--TCCTTTEEEE---ESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEECCH
T ss_pred HHHHHHHHc--CCCcceEEEe---ccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEECCC
Confidence 555555443 221 111222 2689999999999999999999999844 5678999999999999999988654
Q ss_pred C
Q 041687 583 G 583 (764)
Q Consensus 583 g 583 (764)
+
T Consensus 278 ~ 278 (290)
T 3mt0_A 278 D 278 (290)
T ss_dssp H
T ss_pred C
Confidence 4
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.48 E-value=4e-07 Score=95.92 Aligned_cols=120 Identities=12% Similarity=0.045 Sum_probs=91.4
Q ss_pred CccceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHh
Q 041687 433 NSELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYK 512 (764)
Q Consensus 433 ~~e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 512 (764)
....|||+|++.++....+++.+..++ +..+.+++++|+.+-.. .++.++.+.++-
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la-~~~~~~l~ll~v~~~~~-----------------------~~~~l~~~~~~l 223 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVV-KKTGGELHIIHVSEDGD-----------------------KTADLRVMEEVI 223 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHH-HHHTCEEEEEEECSSSC-----------------------CHHHHHHHHHHH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHh-hhcCCEEEEEEEccCch-----------------------HHHHHHHHHHHH
Confidence 345789999999999999999998885 55678999999976322 123333344443
Q ss_pred HhcCCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEEee
Q 041687 513 HYQKGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGILYY 581 (764)
Q Consensus 513 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIlvd 581 (764)
+. .++.++.... ..+..+.|++.|++.++||||||.++.+ +..+|++.++|++++||||.++..
T Consensus 224 ~~--~~~~~~~~~~---~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~ 290 (294)
T 3loq_A 224 GA--EGIEVHVHIE---SGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKR 290 (294)
T ss_dssp HH--TTCCEEEEEE---CSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECS
T ss_pred HH--cCCcEEEEEe---cCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECC
Confidence 33 2345554433 4689999999999999999999999844 567899999999999999988743
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.47 E-value=1.1e-07 Score=101.21 Aligned_cols=143 Identities=8% Similarity=0.027 Sum_probs=93.6
Q ss_pred ccceeEEEeeCCCC-------hHHHHHHHHhcCCCCC--CceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhH
Q 041687 434 SELRILACINDPDN-------VATILNIIQTSNSPQS--PIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPM 504 (764)
Q Consensus 434 ~e~rILvcv~~~e~-------~~~li~l~~~~~~~~s--~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 504 (764)
...|||+|++.++. ...+++.+..++ +.. +.+++++|+.+..........+... .........++.
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la-~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 229 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLS-HRIQKDPDVHLLSAYPVAPINIAIELPDFD----PNLYNNALRGQH 229 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHH-HHHCSSCCEEEEEEECCCSCSCCTTCTTCC----HHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHH-HhccCCCeEEEEEeecCcchhhhccCCccc----HHHHHHHHHHHH
Confidence 35789999999884 477888877775 444 6899999998865432110000000 000000112334
Q ss_pred HHHHHHHhHhcCCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEEee
Q 041687 505 INALRRYKHYQKGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGILYY 581 (764)
Q Consensus 505 ~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIlvd 581 (764)
.+.++++.++.... .++.... ..+..+.|++.|+++++||||||.|+.+ +..+|++.++|++++||||.++..
T Consensus 230 ~~~l~~~~~~~~~~-~~~~~v~---~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~ 305 (319)
T 3olq_A 230 LIAMKELRQKFSIP-EEKTHVK---EGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKP 305 (319)
T ss_dssp HHHHHHHHHHTTCC-GGGEEEE---ESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred HHHHHHHHHHhCCC-cccEEEe---cCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEECC
Confidence 45566665543211 1122222 3678999999999999999999999844 568899999999999999999876
Q ss_pred cCCC
Q 041687 582 RGLF 585 (764)
Q Consensus 582 rg~~ 585 (764)
++..
T Consensus 306 ~~~~ 309 (319)
T 3olq_A 306 DGFT 309 (319)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 6643
No 24
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.46 E-value=1.2e-06 Score=81.71 Aligned_cols=129 Identities=12% Similarity=0.159 Sum_probs=81.1
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCC---------cchhhhHHHHHHHHHhcccCCCcE
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDN---------LIEESCDLNMINGFRMTCINNSNV 667 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~---------~~e~~~d~~~~~e~~~~~~~~~~v 667 (764)
.++|++++.|.++.+.|+++|.++|+..+++++++++.++....... +..++..++.++++.......+ +
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~ 83 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTS-A 83 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-C
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 67999999999999999999999999999999999998764321110 1111233455555554322111 2
Q ss_pred -EEEEeeecChhhHHHHHHh-hc--CCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEe
Q 041687 668 -EYITRSIKDGAETAGVLNA-IG--DDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQ 741 (764)
Q Consensus 668 -~y~e~~V~~g~~~~~~i~~-~~--~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvq 741 (764)
.+ |..+..| +..+.|.+ .+ .++||+++|+++.. ++.+| -+|...+-+... ++++||||+
T Consensus 84 ~~~-~~~~~~g-~~~~~I~~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~---~~~pVlvV~ 146 (146)
T 3s3t_A 84 PNL-KTEISYG-IPKHTIEDYAKQHPEIDLIVLGATGTN------SPHRV----AVGSTTSYVVDH---APCNVIVIR 146 (146)
T ss_dssp CCC-EEEEEEE-CHHHHHHHHHHHSTTCCEEEEESCCSS------CTTTC----SSCHHHHHHHHH---CSSEEEEEC
T ss_pred cce-EEEEecC-ChHHHHHHHHHhhcCCCEEEECCCCCC------CcceE----EEcchHHHHhcc---CCCCEEEeC
Confidence 11 1122233 23333333 22 58999999998632 12222 378777777765 678999984
No 25
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.41 E-value=9.7e-07 Score=82.87 Aligned_cols=129 Identities=10% Similarity=0.097 Sum_probs=78.2
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCC----------CCC---cchhhhHHHHHHHHHhcccC
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTT----------NDN---LIEESCDLNMINGFRMTCIN 663 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~----------~~~---~~e~~~d~~~~~e~~~~~~~ 663 (764)
.++|++++.|.++.+.|+++|.++|+..+++++++++.++.... ..+ +..++..++.++++..+...
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI 85 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999999999998653210 001 11112334555555544211
Q ss_pred CC-cEEEEEeeecChhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEee
Q 041687 664 NS-NVEYITRSIKDGAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQQ 742 (764)
Q Consensus 664 ~~-~v~y~e~~V~~g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvqq 742 (764)
.. .....+-.. .+++++..++. ++||+++|+++.. + |. --+|-..+-+... ++++||||..
T Consensus 86 ~~~~~~~~~g~~--~~~I~~~a~~~--~~dliV~G~~~~~------~---~~--~~~Gs~~~~vl~~---~~~pVlvv~~ 147 (150)
T 3tnj_A 86 DPAHRWLVWGEP--REEIIRIAEQE--NVDLIVVGSHGRH------G---LA--LLLGSTANSVLHY---AKCDVLAVRL 147 (150)
T ss_dssp CGGGEEEEESCH--HHHHHHHHHHT--TCSEEEEEEC-------------------CCCHHHHHHHH---CSSEEEEEEC
T ss_pred CcceEEEecCCH--HHHHHHHHHHc--CCCEEEEecCCCC------C---cC--eEecchHHHHHHh---CCCCEEEEeC
Confidence 11 121111111 23344555543 8999999998632 1 11 2477777777765 6789999986
Q ss_pred c
Q 041687 743 Q 743 (764)
Q Consensus 743 ~ 743 (764)
.
T Consensus 148 ~ 148 (150)
T 3tnj_A 148 R 148 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 26
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.40 E-value=6.1e-07 Score=85.36 Aligned_cols=127 Identities=9% Similarity=0.073 Sum_probs=81.7
Q ss_pred ceeEEEeecc-CcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccC-CCcEEEEEeee
Q 041687 597 TISVCVLFIG-GPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCIN-NSNVEYITRSI 674 (764)
Q Consensus 597 ~~~i~~~f~g-G~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~-~~~v~y~e~~V 674 (764)
.++|++++.| .+..+.|+++|.++|+..+++++++++.++.... ++..++..++.++++...... .-.+.. +..+
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~g~~~~~-~~~v 100 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT--KDEDIIEAKETLSWAVSIIRKEGAEGEE-HLLV 100 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS--CHHHHHHHHHHHHHHHHHHHHTTCCEEE-EEEE
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc--cHHHHHHHHHHHHHHHHHHHhcCCCceE-EEEe
Confidence 5799999999 9999999999999999999999999998653321 112222344455554432111 112222 2233
Q ss_pred cCh---hhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEe
Q 041687 675 KDG---AETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQ 741 (764)
Q Consensus 675 ~~g---~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvq 741 (764)
..| +++++.+++. ++||+++|+++.. ++.+ --+|.+.+-+... ++++||||+
T Consensus 101 ~~G~~~~~I~~~a~~~--~~DLIV~G~~g~~------~~~~----~~lGSv~~~vl~~---a~~PVLvVr 155 (155)
T 3dlo_A 101 RGKEPPDDIVDFADEV--DAIAIVIGIRKRS------PTGK----LIFGSVARDVILK---ANKPVICIK 155 (155)
T ss_dssp SSSCHHHHHHHHHHHT--TCSEEEEECCEEC------TTSC----EECCHHHHHHHHH---CSSCEEEEC
T ss_pred cCCCHHHHHHHHHHHc--CCCEEEECCCCCC------CCCC----EEeccHHHHHHHh---CCCCEEEeC
Confidence 333 2344444433 8999999998631 1211 1378888777765 678999985
No 27
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.39 E-value=7.8e-07 Score=83.07 Aligned_cols=126 Identities=16% Similarity=0.198 Sum_probs=78.9
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCC----C------CC---CCcchhhhHHHHHHHHHhccc-
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNH----T------TN---DNLIEESCDLNMINGFRMTCI- 662 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~----~------~~---~~~~e~~~d~~~~~e~~~~~~- 662 (764)
.+||++++.|+++.+.|+++|.++|+..+++++++++.++.. . .. ..+..++..++.++++.....
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999999986422 0 00 011112234455555543211
Q ss_pred -C--CCcEEEEEeeecCh---hhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCccc
Q 041687 663 -N--NSNVEYITRSIKDG---AETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRAS 736 (764)
Q Consensus 663 -~--~~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~s 736 (764)
+ .+.+.+ .+..| +++.+..++. ++||+++|+++.. ++.+| -+|...+-+... ++++
T Consensus 82 ~g~~~~~~~~---~~~~g~~~~~I~~~a~~~--~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~---~~~p 143 (147)
T 3hgm_A 82 LGVPADKVRA---FVKGGRPSRTIVRFARKR--ECDLVVIGAQGTN------GDKSL----LLGSVAQRVAGS---AHCP 143 (147)
T ss_dssp TTCCGGGEEE---EEEESCHHHHHHHHHHHT--TCSEEEECSSCTT------CCSCC----CCCHHHHHHHHH---CSSC
T ss_pred cCCCccceEE---EEecCCHHHHHHHHHHHh--CCCEEEEeCCCCc------cccce----eeccHHHHHHhh---CCCC
Confidence 1 111122 22222 3344444443 8999999998632 12221 377777777765 6689
Q ss_pred EEEE
Q 041687 737 IMVI 740 (764)
Q Consensus 737 vLvv 740 (764)
||||
T Consensus 144 VlvV 147 (147)
T 3hgm_A 144 VLVV 147 (147)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9986
No 28
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.38 E-value=1.5e-06 Score=80.73 Aligned_cols=125 Identities=7% Similarity=0.122 Sum_probs=76.3
Q ss_pred eeEEEeeccCcc--hHHHHHHHHHHhhCCCeEEEEEEeeecCCCC--------CCCcchhhhHH---HHHHHHHhcccC-
Q 041687 598 ISVCVLFIGGPD--DREALAYGARMVENHSIMLTIIRFIAMNHTT--------NDNLIEESCDL---NMINGFRMTCIN- 663 (764)
Q Consensus 598 ~~i~~~f~gG~d--dreAl~~a~rma~~~~v~ltvlr~~~~~~~~--------~~~~~e~~~d~---~~~~e~~~~~~~- 663 (764)
++|++++.|+++ .+.|+++|.++|+..+++++++++.++.... ...+..++..+ +.++++..+...
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 689999999999 9999999999999999999999998653210 00011111222 233333333211
Q ss_pred CCcEEEEEeeecCh---hhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEE
Q 041687 664 NSNVEYITRSIKDG---AETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVI 740 (764)
Q Consensus 664 ~~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvv 740 (764)
...+.+ .+..| +++.+..++. ++||+++|+++ + |+.+| -+|-..+-+... ++++||||
T Consensus 82 ~~~v~~---~~~~g~~~~~I~~~a~~~--~~dliV~G~~~---~----~~~~~----~~Gs~~~~v~~~---~~~pVlvv 142 (143)
T 3fdx_A 82 EDRMHF---HVAEGSPKDKILALAKSL--PADLVIIASHR---P----DITTY----LLGSNAAAVVRH---AECSVLVV 142 (143)
T ss_dssp GGGEEE---EEEESCHHHHHHHHHHHT--TCSEEEEESSC---T----TCCSC----SSCHHHHHHHHH---CSSEEEEE
T ss_pred CCceEE---EEEecChHHHHHHHHHHh--CCCEEEEeCCC---C----CCeee----eeccHHHHHHHh---CCCCEEEe
Confidence 112222 22223 3344444433 89999999984 1 12222 378888777765 67899998
Q ss_pred e
Q 041687 741 Q 741 (764)
Q Consensus 741 q 741 (764)
.
T Consensus 143 ~ 143 (143)
T 3fdx_A 143 R 143 (143)
T ss_dssp C
T ss_pred C
Confidence 4
No 29
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.38 E-value=1.3e-06 Score=80.80 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=79.6
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCC-C---CC---cchhhhHHHHHHHHHhcccCCCcEEE
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTT-N---DN---LIEESCDLNMINGFRMTCINNSNVEY 669 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~-~---~~---~~e~~~d~~~~~e~~~~~~~~~~v~y 669 (764)
.++|++++.|.++++.|+++|.++|+..+++++++++.++.... . .+ +..++..++.++++..+ .+...+.+
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~ 80 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARAL-TGVPKEDA 80 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHH-HCCCGGGE
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHH-cCCCccEE
Confidence 46999999999999999999999999999999999998643210 0 01 11122344556665543 11101222
Q ss_pred EEeeecC-hhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEe
Q 041687 670 ITRSIKD-GAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQ 741 (764)
Q Consensus 670 ~e~~V~~-g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvq 741 (764)
. ....+ ..++.+.+++. ++||+++|+++.. ++.+| -+|-..+-+... ++++||||.
T Consensus 81 ~-~~~g~~~~~I~~~a~~~--~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~---~~~pVlvv~ 137 (137)
T 2z08_A 81 L-LLEGVPAEAILQAARAE--KADLIVMGTRGLG------ALGSL----FLGSQSQRVVAE---APCPVLLVR 137 (137)
T ss_dssp E-EEESSHHHHHHHHHHHT--TCSEEEEESSCTT------CCSCS----SSCHHHHHHHHH---CSSCEEEEC
T ss_pred E-EEecCHHHHHHHHHHHc--CCCEEEECCCCCc------hhhhh----hhccHHHHHHhc---CCCCEEEeC
Confidence 1 11111 23445555543 8999999998632 12221 378877777765 678999984
No 30
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.35 E-value=2e-06 Score=79.52 Aligned_cols=127 Identities=14% Similarity=0.192 Sum_probs=79.2
Q ss_pred eeEEEeeccCcchHHHHHHHHHHh-hCCCeEEEEEEeeecCCCCCC---------CcchhhhHHHHHHHHHhcccCCCcE
Q 041687 598 ISVCVLFIGGPDDREALAYGARMV-ENHSIMLTIIRFIAMNHTTND---------NLIEESCDLNMINGFRMTCINNSNV 667 (764)
Q Consensus 598 ~~i~~~f~gG~ddreAl~~a~rma-~~~~v~ltvlr~~~~~~~~~~---------~~~e~~~d~~~~~e~~~~~~~~~~v 667 (764)
++|++++.|.++.+.|+++|.++| +..+++++++++.++...... ++.+++..++.++++....... .+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-g~ 80 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEK-GI 80 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 689999999999999999999999 999999999999875432100 0011023344455554332111 12
Q ss_pred EEEEeeecChhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEe
Q 041687 668 EYITRSIKDGAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQ 741 (764)
Q Consensus 668 ~y~e~~V~~g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvq 741 (764)
.+ |..+..| +..+.|.+.++++||+++|+++.. ++.+| +|...+-+... ++++||||.
T Consensus 81 ~~-~~~v~~g-~~~~~I~~~a~~~dliV~G~~~~~------~~~~~-----~Gs~~~~vl~~---~~~pVlvv~ 138 (138)
T 3idf_A 81 NP-FVVIKEG-EPVEMVLEEAKDYNLLIIGSSENS------FLNKI-----FASHQDDFIQK---APIPVLIVK 138 (138)
T ss_dssp CC-EEEEEES-CHHHHHHHHHTTCSEEEEECCTTS------TTSSC-----CCCTTCHHHHH---CSSCEEEEC
T ss_pred Ce-EEEEecC-ChHHHHHHHHhcCCEEEEeCCCcc------hHHHH-----hCcHHHHHHhc---CCCCEEEeC
Confidence 22 2233344 355555555559999999998631 12222 16555555544 568999984
No 31
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.30 E-value=3.3e-06 Score=80.35 Aligned_cols=130 Identities=13% Similarity=0.111 Sum_probs=82.1
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecC-----C---CC--C----CC------cch---hhhHHHH
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMN-----H---TT--N----DN------LIE---ESCDLNM 653 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~-----~---~~--~----~~------~~e---~~~d~~~ 653 (764)
.++|++++.|.++.+.|+++|.++|+..+++++++++.++. . .. . .. +.+ ++..++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK 84 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998754 1 10 0 11 011 1123345
Q ss_pred HHHHHhcccCCCcEEEEEeeecCh---hhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCC
Q 041687 654 INGFRMTCINNSNVEYITRSIKDG---AETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSH 730 (764)
Q Consensus 654 ~~e~~~~~~~~~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d 730 (764)
++++....... .+.+. ..+..| .++.+.+++. ++||+++|+++.. ++.+| -+|-+.+-+...
T Consensus 85 l~~~~~~~~~~-g~~~~-~~v~~G~~~~~I~~~a~~~--~~dlIV~G~~g~~------~~~~~----~~GSv~~~vl~~- 149 (162)
T 1mjh_A 85 MENIKKELEDV-GFKVK-DIIVVGIPHEEIVKIAEDE--GVDIIIMGSHGKT------NLKEI----LLGSVTENVIKK- 149 (162)
T ss_dssp HHHHHHHHHHT-TCEEE-EEEEEECHHHHHHHHHHHT--TCSEEEEESCCSS------CCTTC----SSCHHHHHHHHH-
T ss_pred HHHHHHHHHHc-CCceE-EEEcCCCHHHHHHHHHHHc--CCCEEEEcCCCCC------Cccce----EecchHHHHHHh-
Confidence 55554331111 12221 112223 3344455543 8999999998631 22222 378888877766
Q ss_pred CCCcccEEEEeec
Q 041687 731 CASRASIMVIQQQ 743 (764)
Q Consensus 731 ~~~~~svLvvqq~ 743 (764)
++++||||+..
T Consensus 150 --~~~pVlvv~~~ 160 (162)
T 1mjh_A 150 --SNKPVLVVKRK 160 (162)
T ss_dssp --CCSCEEEECCC
T ss_pred --CCCCEEEEeCC
Confidence 67899999864
No 32
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.30 E-value=3.4e-06 Score=80.85 Aligned_cols=131 Identities=13% Similarity=0.152 Sum_probs=78.6
Q ss_pred cceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEE--EeeecCCC-CC----CC---cchhhhHHHHHHHHHhcccCCC
Q 041687 596 LTISVCVLFIGGPDDREALAYGARMVENHSIMLTII--RFIAMNHT-TN----DN---LIEESCDLNMINGFRMTCINNS 665 (764)
Q Consensus 596 ~~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvl--r~~~~~~~-~~----~~---~~e~~~d~~~~~e~~~~~~~~~ 665 (764)
..++|++++.|.+..+.|+++|.++|+ .+++++++ ++.++... .. .+ +..++..++.++++.......+
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 94 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAG 94 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTT
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 367999999999999999999999999 99999999 88754321 00 00 1112233455555543321111
Q ss_pred cEE-EEEeeecCh---hhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEe
Q 041687 666 NVE-YITRSIKDG---AETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQ 741 (764)
Q Consensus 666 ~v~-y~e~~V~~g---~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvq 741 (764)
+. +. ..+..| +++++.+++ .++||++||+++.. ++.+| -+|-+.+-+... ++++||||+
T Consensus 95 -v~~v~-~~v~~G~~~~~I~~~a~~--~~~DLIV~G~~g~~------~~~~~----~lGSva~~vl~~---a~~PVlvV~ 157 (163)
T 1tq8_A 95 -AKNVE-ERPIVGAPVDALVNLADE--EKADLLVVGNVGLS------TIAGR----LLGSVPANVSRR---AKVDVLIVH 157 (163)
T ss_dssp -CCEEE-EEEECSSHHHHHHHHHHH--TTCSEEEEECCCCC------SHHHH----HTBBHHHHHHHH---TTCEEEEEC
T ss_pred -CCeEE-EEEecCCHHHHHHHHHHh--cCCCEEEECCCCCC------cccce----eeccHHHHHHHh---CCCCEEEEe
Confidence 11 21 222333 334444443 48999999998632 11111 377777777765 678999998
Q ss_pred ecc
Q 041687 742 QQA 744 (764)
Q Consensus 742 q~~ 744 (764)
...
T Consensus 158 ~~~ 160 (163)
T 1tq8_A 158 TTE 160 (163)
T ss_dssp CC-
T ss_pred CCC
Confidence 653
No 33
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.29 E-value=3.9e-06 Score=77.76 Aligned_cols=127 Identities=11% Similarity=0.072 Sum_probs=79.0
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeec-CC-CCCC--------CcchhhhHHHHHHHHHhcccCCC-
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAM-NH-TTND--------NLIEESCDLNMINGFRMTCINNS- 665 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~-~~-~~~~--------~~~e~~~d~~~~~e~~~~~~~~~- 665 (764)
.++|++++.|.++++.|+++|.++|+..+++++++++.++ .. .... .+..++..++.++++..+.....
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPIS 81 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCC
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcCCCce
Confidence 4699999999999999999999999999999999999843 11 1100 00011223455666654421110
Q ss_pred cEEEEEeeecChhhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEEeec
Q 041687 666 NVEYITRSIKDGAETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVIQQQ 743 (764)
Q Consensus 666 ~v~y~e~~V~~g~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvvqq~ 743 (764)
.....+-.. ..++.+.+++. ++||+++|++ ... + ..+|-..+-+... ++++||||...
T Consensus 82 ~~~~~~g~~--~~~I~~~a~~~--~~dliV~G~~-~~~------~------~~lgs~~~~vl~~---~~~pVlvv~~~ 139 (141)
T 1jmv_A 82 EKLSGSGDL--GQVLSDAIEQY--DVDLLVTGHH-QDF------W------SKLMSSTRQVMNT---IKIDMLVVPLR 139 (141)
T ss_dssp CEEEEEECH--HHHHHHHHHHT--TCCEEEEEEC-CCC------H------HHHHHHHHHHHTT---CCSEEEEEECC
T ss_pred EEEEecCCH--HHHHHHHHHhc--CCCEEEEeCC-Cch------h------hhhcchHHHHHhc---CCCCEEEeeCC
Confidence 111111111 23455555554 7999999998 321 1 1256666666654 67899999764
No 34
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.25 E-value=3.3e-06 Score=79.87 Aligned_cols=128 Identities=13% Similarity=0.154 Sum_probs=80.4
Q ss_pred cceeEEEeec--cCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCC-------cchhhhHHHHHHHHHhccc--CC
Q 041687 596 LTISVCVLFI--GGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDN-------LIEESCDLNMINGFRMTCI--NN 664 (764)
Q Consensus 596 ~~~~i~~~f~--gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~-------~~e~~~d~~~~~e~~~~~~--~~ 664 (764)
..++|++++. |.++.+.|+++|.++|+..+++++++++.++....... +..++..++.++++..... +.
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 93 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGV 93 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3679999999 99999999999999999999999999998654321100 1111233445555543211 11
Q ss_pred CcEEEEEeeecCh---hhHHHH-HHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCcccEEEE
Q 041687 665 SNVEYITRSIKDG---AETAGV-LNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASRASIMVI 740 (764)
Q Consensus 665 ~~v~y~e~~V~~g---~~~~~~-i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~svLvv 740 (764)
+.+.+ ....+| .++++. +++ .++||+++|+++.. .|. . -+|...+-+... ++++||||
T Consensus 94 ~~~~~--~v~~~g~~~~~I~~~~a~~--~~~DlIV~G~~g~~---------~~~-~-~~Gs~~~~vl~~---a~~PVlvV 155 (156)
T 3fg9_A 94 NQVEP--LVYEGGDVDDVILEQVIPE--FKPDLLVTGADTEF---------PHS-K-IAGAIGPRLARK---APISVIVV 155 (156)
T ss_dssp SSEEE--EEEECSCHHHHHHHTHHHH--HCCSEEEEETTCCC---------TTS-S-SCSCHHHHHHHH---CSSEEEEE
T ss_pred CceEE--EEEeCCCHHHHHHHHHHHh--cCCCEEEECCCCCC---------ccc-e-eecchHHHHHHh---CCCCEEEe
Confidence 12222 122212 334444 444 48999999998632 121 2 488888877766 67899998
Q ss_pred e
Q 041687 741 Q 741 (764)
Q Consensus 741 q 741 (764)
+
T Consensus 156 ~ 156 (156)
T 3fg9_A 156 R 156 (156)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.24 E-value=4.9e-06 Score=79.89 Aligned_cols=131 Identities=12% Similarity=0.005 Sum_probs=81.7
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCC---------------CCCcc---hhhhHHHHHHHHH
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTT---------------NDNLI---EESCDLNMINGFR 658 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~---------------~~~~~---e~~~d~~~~~e~~ 658 (764)
.++|++++.|.++.+.|+++|.++|+..+++++++++.++.... ..++. .++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998653210 00111 1122344455554
Q ss_pred hcccC-CCcEEEEEeeecCh---hhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhhhcCCCCCc
Q 041687 659 MTCIN-NSNVEYITRSIKDG---AETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDILASSHCASR 734 (764)
Q Consensus 659 ~~~~~-~~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~ 734 (764)
..... .-.+.+ +..+..| .++++.+++. ++||+++|+++.. ++.+| -+|-+.+-+... ++
T Consensus 85 ~~~~~~g~~~~~-~~~~~~g~~~~~I~~~a~~~--~~DlIV~G~~g~~------~~~~~----~~Gsv~~~vl~~---~~ 148 (170)
T 2dum_A 85 EEVKRAFRAKNV-RTIIRFGIPWDEIVKVAEEE--NVSLIILPSRGKL------SLSHE----FLGSTVMRVLRK---TK 148 (170)
T ss_dssp HHHHHHTTCSEE-EEEEEEECHHHHHHHHHHHT--TCSEEEEESCCCC------C--TT----CCCHHHHHHHHH---CS
T ss_pred HHHHHcCCceee-eeEEecCChHHHHHHHHHHc--CCCEEEECCCCCC------ccccc----eechHHHHHHHh---CC
Confidence 32110 111222 1122223 3345555543 8999999998632 12221 378877777765 67
Q ss_pred ccEEEEeec
Q 041687 735 ASIMVIQQQ 743 (764)
Q Consensus 735 ~svLvvqq~ 743 (764)
++||||...
T Consensus 149 ~PVlvv~~~ 157 (170)
T 2dum_A 149 KPVLIIKEV 157 (170)
T ss_dssp SCEEEECCC
T ss_pred CCEEEEccC
Confidence 899999864
No 36
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.20 E-value=2.6e-06 Score=90.36 Aligned_cols=128 Identities=9% Similarity=0.042 Sum_probs=87.5
Q ss_pred cceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchh----HHHHHHH
Q 041687 435 ELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDP----MINALRR 510 (764)
Q Consensus 435 e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~af~~ 510 (764)
..+||+|++.++....+++.+..++ +..+.+++++|+.+-.... +. . ........++ +.+.++.
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~-~~--~--------~~~~~~~~~~~~~~l~~~~~~ 238 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEA-SRRNVDLVALHAWSDVDVS-EW--P--------GIDWPATQSMAEQVLAERLAG 238 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHH-HHTTCCEEEEEESCSSCCT-TC--S--------SCCHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHH-HhcCCEEEEEEEeeccccc-CC--C--------cccHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999988885 5567889999998743211 00 0 0000001112 2222333
Q ss_pred HhHhcCCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCC---ChhhHHHHHHhhhcCCcceEEEe
Q 041687 511 YKHYQKGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRAD---SPQIRTVTKNVIKLAPCSVGILY 580 (764)
Q Consensus 511 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~---~~~~~~~n~~Vl~~ApCsVgIlv 580 (764)
+.+.. .++.++..+. ..+..+.|++.|+ ++||||||.|+.+ +..+|++.++|++++||||.++.
T Consensus 239 ~~~~~-~~~~~~~~~~---~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~ 305 (309)
T 3cis_A 239 WQERY-PNVAITRVVV---RDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVAR 305 (309)
T ss_dssp HHHHC-TTSCEEEEEE---SSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEEC
T ss_pred HHhhC-CCCcEEEEEE---cCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeC
Confidence 33221 2455655443 4689999999997 8999999999843 56789999999999999998874
No 37
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.08 E-value=9.6e-06 Score=74.86 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=37.3
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEee-e
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFI-A 635 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~-~ 635 (764)
.++|++++.|.++.+.|+++|.++|+..+++++++++. +
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 43 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLED 43 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 57999999999999999999999999999999999998 5
No 38
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.97 E-value=7.1e-06 Score=84.89 Aligned_cols=114 Identities=11% Similarity=0.023 Sum_probs=83.3
Q ss_pred cceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHhHh
Q 041687 435 ELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYKHY 514 (764)
Q Consensus 435 e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 514 (764)
..|||+|++.++....+++.+..++ +..+.+++++|+.+-.+ + .++..+.+.++-+.
T Consensus 154 ~~~ilv~~d~s~~~~~al~~a~~la-~~~~a~l~ll~v~~~~~---------~-------------~~~~l~~~~~~l~~ 210 (268)
T 3ab8_A 154 LEGALLGYDASESAVRALHALAPLA-RALGLGVRVVSVHEDPA---------R-------------AEAWALEAEAYLRD 210 (268)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHH-HHHTCCEEEEEECSSHH---------H-------------HHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHhh-hcCCCEEEEEEEcCcHH---------H-------------HHHHHHHHHHHHHH
Confidence 3589999999999999999887774 34456799999975320 0 01222233333222
Q ss_pred cCCCeEEEEEEEeccCCChHHHHHHHHHhcCccEEEeccccCCChhhHHHHHHhhhcCCcceEEE
Q 041687 515 QKGLKSVHCFTAVAPFASMHDDICLMAFEKCTALVILPFKRADSPQIRTVTKNVIKLAPCSVGIL 579 (764)
Q Consensus 515 ~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~s~~~~~~~~n~~Vl~~ApCsVgIl 579 (764)
.+++++..+. ..+..+.|.+.|++. |||+||. +-.+..+|++.++|++++||||.++
T Consensus 211 --~~~~~~~~~~---~g~~~~~i~~~a~~~--dliV~G~-~~~~~~~Gs~~~~vl~~~~~pvlvv 267 (268)
T 3ab8_A 211 --HGVEASALVL---GGDAADHLLRLQGPG--DLLALGA-PVRRLVFGSTAERVIRNAQGPVLTA 267 (268)
T ss_dssp --TTCCEEEEEE---CSCHHHHHHHHCCTT--EEEEEEC-CCSCCSSCCHHHHHHHHCSSCEEEE
T ss_pred --cCCceEEEEe---CCChHHHHHHHHHhC--CEEEECC-cccccEeccHHHHHHhcCCCCEEEe
Confidence 2455554433 378999999999988 9999998 5457788999999999999999875
No 39
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.89 E-value=0.0001 Score=70.90 Aligned_cols=130 Identities=14% Similarity=0.221 Sum_probs=75.1
Q ss_pred ceeEEEeeccCc---------chHHHHHHHHHHh-hC--CCeEEEEEEeeecCC--CC---C----CCcc------hhhh
Q 041687 597 TISVCVLFIGGP---------DDREALAYGARMV-EN--HSIMLTIIRFIAMNH--TT---N----DNLI------EESC 649 (764)
Q Consensus 597 ~~~i~~~f~gG~---------ddreAl~~a~rma-~~--~~v~ltvlr~~~~~~--~~---~----~~~~------e~~~ 649 (764)
.++|++++.|.+ ..+.|+++|.+++ +. .+++++++++..+.. .. . .++. .++.
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK 84 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHH
Confidence 579999999999 8999999999986 54 689999999975321 10 0 0000 0112
Q ss_pred HHHHHHHHHhcccCCCcEEEEEeeecCh---hhHHHHHHhhcCCccEEEEeccCCCCchhhcccCCCCCCCccchhhhhh
Q 041687 650 DLNMINGFRMTCINNSNVEYITRSIKDG---AETAGVLNAIGDDFDLILVGRRHDRHSQVLLGLSEWSEIEELGVVGDIL 726 (764)
Q Consensus 650 d~~~~~e~~~~~~~~~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiiVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~l 726 (764)
.++.++++....... .+.+. ..+..| .++++.+++. ++||++||+++.. ++.+| -+|-+.+-+
T Consensus 85 ~~~~l~~~~~~~~~~-g~~~~-~~v~~G~~~~~I~~~a~~~--~~DLIVmG~~g~~------~~~~~----~~Gsva~~v 150 (175)
T 2gm3_A 85 GLHLLEFFVNKCHEI-GVGCE-AWIKTGDPKDVICQEVKRV--RPDFLVVGSRGLG------RFQKV----FVGTVSAFC 150 (175)
T ss_dssp HHHHHHHHHHHHHHH-TCEEE-EEEEESCHHHHHHHHHHHH--CCSEEEEEECCCC------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCceE-EEEecCCHHHHHHHHHHHh--CCCEEEEeCCCCC------hhhhh----hcCchHHHH
Confidence 334555554321111 12221 122223 3444555544 8999999998632 12222 377777777
Q ss_pred hcCCCCCcccEEEEeec
Q 041687 727 ASSHCASRASIMVIQQQ 743 (764)
Q Consensus 727 as~d~~~~~svLvvqq~ 743 (764)
... ++++||||...
T Consensus 151 l~~---a~~pVlvv~~~ 164 (175)
T 2gm3_A 151 VKH---AECPVMTIKRN 164 (175)
T ss_dssp HHH---CSSCEEEEECC
T ss_pred HhC---CCCCEEEEcCC
Confidence 755 67899999864
No 40
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=94.48 E-value=1.1 Score=46.03 Aligned_cols=222 Identities=9% Similarity=0.069 Sum_probs=132.7
Q ss_pred CccceeEEEeeCCCChHHHHHHHHhcCCCCCCceEEEEEeecccCCCCchhhccccccCCCCCCCCCCchhHHHHHHHHh
Q 041687 433 NSELRILACINDPDNVATILNIIQTSNSPQSPIAVCFMNLEEYVGRYTPVVIQHRLDSLEPSSSKPSKIDPMINALRRYK 512 (764)
Q Consensus 433 ~~e~rILvcv~~~e~~~~li~l~~~~~~~~s~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 512 (764)
+-.-.|||++.+|..-.+++.++..+. .....+.+.++. +....+.+ .++ ..++++|-
T Consensus 18 nWrP~iLV~sg~p~~~~~li~la~~lt--~~~G~ltv~~i~--p~~~~~~l-----------------~~q-l~~l~~~l 75 (294)
T 3g40_A 18 TWKANLLVPVEDPRELMGTFDFLRDIT--YPKGSVKLLGLA--GNTDKENL-----------------LSQ-LPSISEGF 75 (294)
T ss_dssp -CCCEEEEEESCHHHHHHHHHHHHHHH--TTTCEEEEEECC-----CTTCH-----------------HHH-HHHHHHHH
T ss_pred CCCCcEEEecCCchhhhhHHHHHHHhc--cCceeEEEEEEc--cCCCccHH-----------------HHH-HHHHHHHH
Confidence 456789999999999999999999995 444566666663 22111100 122 36666665
Q ss_pred HhcCCCeEEEEEEEeccCCChHHHHHHHHHhc-----CccEEEeccccCC--ChhhHHHHHHhhhcCCcceEEEeecCCC
Q 041687 513 HYQKGLKSVHCFTAVAPFASMHDDICLMAFEK-----CTALVILPFKRAD--SPQIRTVTKNVIKLAPCSVGILYYRGLF 585 (764)
Q Consensus 513 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~-----~adlIIlp~h~s~--~~~~~~~n~~Vl~~ApCsVgIlvdrg~~ 585 (764)
++. ++ ..++.+-.-.+.++++..+.+.. +.+.|+|||.... +..++.+.++..+ +--.|.++-+....
T Consensus 76 ~~r--~v--~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~y~~~i~~~~~-~~~nVlil~~~~~~ 150 (294)
T 3g40_A 76 QEE--GV--FSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEIREIIRKASM-YRMGVLLFSKHPQA 150 (294)
T ss_dssp HHT--TC--EEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHHHHHHHHHHHH-TTCEEEEEECCTTT
T ss_pred HhC--Cc--eeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHHHHHHHHHHHH-hCceEEEEecCCcc
Confidence 553 33 33333444467889999988876 4588999987622 4577787777544 46677776432211
Q ss_pred CCCCcccccCcceeEEEeec--------cC--cchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHH
Q 041687 586 MDPKPIFSRQLTISVCVLFI--------GG--PDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMIN 655 (764)
Q Consensus 586 ~~~~~~~~~~~~~~i~~~f~--------gG--~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~ 655 (764)
++. ..++|=+=.- || .+-..++-+|-.+.++.++++.++.+++. +.+++..+++++
T Consensus 151 -~fg------~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d-------e~a~~~a~~~l~ 216 (294)
T 3g40_A 151 -GLG------RQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT-------AIQAQAAENFLQ 216 (294)
T ss_dssp -TTT------TSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS-------HHHHHHHHHHHH
T ss_pred -CCC------CCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC-------HHHHHHHHHHHH
Confidence 121 1234433311 22 35677899999999999999999999843 233445566677
Q ss_pred HHHhcccCCCcEEEEEeeecChhhHHHHHHhhcCCccEEEEeccCCC
Q 041687 656 GFRMTCINNSNVEYITRSIKDGAETAGVLNAIGDDFDLILVGRRHDR 702 (764)
Q Consensus 656 e~~~~~~~~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiiVGr~~~~ 702 (764)
++....- -+...| . |. + +-.+.+++. .+.||+++|-....
T Consensus 217 ~Lv~~~R-i~a~~~--v-v~-~-~F~~il~~s-~~ADL~flGl~~~~ 256 (294)
T 3g40_A 217 SLAELAR-IPNVKM--Q-VL-R-ENPIKSSKL-PFASLHIFSLDPNP 256 (294)
T ss_dssp HHHHHHT-CCSCEE--E-EE-S-SCTTTSSSC-CCCSEEEEECCSSC
T ss_pred HHHHHhc-CCceEE--E-ec-C-chHHHHhhC-cCCCEEEEcCCCCC
Confidence 6664311 111112 1 22 2 244556664 77999999997643
No 41
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=94.39 E-value=6.1 Score=41.71 Aligned_cols=107 Identities=9% Similarity=0.064 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhccChhHHHhccchh---HHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhh
Q 041687 102 FESLGIIYMVFLLSVRIDIRIIQKSGRLA---IVIGVGSF-VLSMIATILASSFVKGAIQLEENLGNSLKTVAALESTIS 177 (764)
Q Consensus 102 la~lGli~~lF~~Gle~d~~~l~~~~~~~---~~ia~~~~-~~p~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts 177 (764)
.....+.+.||..|++++++.+++..|+. ...-...+ +.|+ ++++++..+.. +.......++++++=+.++
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pl-l~~~l~~~~~l----~~~~~~Glil~~~~P~~~~ 118 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPA-TAWCLSKLLNL----PAEIAVGVILVGCCPGGTA 118 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHH-HHHHHHHHTTC----CHHHHHHHHHHHHSCCCTH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHH-HHHHHHHHhCC----ChHHHHHHHHHhcCCchhH
Confidence 34567889999999999999998654432 22222333 3443 34444444421 1111122222222222233
Q ss_pred HHHHHHHHhhcccccChhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 041687 178 IHVILALLSDLKLLNSELGRLAVSSSLISSAVNCFAVTFTGNSS 221 (764)
Q Consensus 178 ~~vv~~iL~elkll~s~~G~lals~a~i~D~~~~ill~~~~~~~ 221 (764)
..+.++. .+.+. .++.+...++.+++.+.+ -+...+
T Consensus 119 s~v~t~~------a~Gd~-~la~~~~~~stll~~~~~-Pl~~~l 154 (332)
T 3zux_A 119 SNVMTYL------ARGNV-ALSVAVTSVSTLTSPLLT-PAIFLM 154 (332)
T ss_dssp HHHHHHH------TTCCH-HHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHH------hCCCH-HHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3333332 22332 577778888999888776 554433
No 42
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=73.52 E-value=6.2 Score=40.19 Aligned_cols=98 Identities=8% Similarity=0.101 Sum_probs=57.9
Q ss_pred EeeccCcchHHHHHHHHHHhhCCCe--EEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEEeee---cC
Q 041687 602 VLFIGGPDDREALAYGARMVENHSI--MLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYITRSI---KD 676 (764)
Q Consensus 602 ~~f~gG~ddreAl~~a~rma~~~~v--~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~~V---~~ 676 (764)
+...=.|.|.+|++.|.|+++..+. +++++-+=++. .++.+++.... +-+++...+-.- -+
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~------------~~~~lr~ala~--GaD~vi~v~d~~~~~~~ 96 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR------------VDESLRKCLAK--GADRAVRVWDDAAEGSD 96 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG------------GHHHHHHHHHT--TCSEEEEECCGGGTTCC
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh------------HHHHHHHHHhc--CCCEEEEEcCcccccCC
Confidence 4445578999999999999986555 88888764221 12334433222 334455443221 12
Q ss_pred hhhHHHHHHhhc--CCccEEEEeccC-----CCCchhhcccCCC
Q 041687 677 GAETAGVLNAIG--DDFDLILVGRRH-----DRHSQVLLGLSEW 713 (764)
Q Consensus 677 g~~~~~~i~~~~--~~~DLiiVGr~~-----~~~s~~~~gl~~w 713 (764)
...+..++.+.. .+||+|+.|++. +.-.|.+..+-+|
T Consensus 97 ~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 140 (264)
T 1o97_C 97 AIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNW 140 (264)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 223333333321 269999999986 2346677777777
No 43
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=73.05 E-value=8.5 Score=38.87 Aligned_cols=97 Identities=15% Similarity=0.245 Sum_probs=57.7
Q ss_pred EeeccCcchHHHHHHHHHHhhCCCe--EEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEE--eee---
Q 041687 602 VLFIGGPDDREALAYGARMVENHSI--MLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYIT--RSI--- 674 (764)
Q Consensus 602 ~~f~gG~ddreAl~~a~rma~~~~v--~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e--~~V--- 674 (764)
+.+.=.|.|.+|++.|.|+++. +. +++++-+=++. .++.+++.... +-+++...+ ...
T Consensus 31 ~~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~------------a~~~lr~ala~--GaD~vi~v~~d~~~~~~ 95 (252)
T 1efp_B 31 VKMSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ------------AAETLRTALAM--GADRAILVVAADDVQQD 95 (252)
T ss_dssp CCEEECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG------------GHHHHHHHHHH--TCSEEEEEECCSSTTCC
T ss_pred CCccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh------------HHHHHHHHHhc--CCCEEEEEecChhhccc
Confidence 3444578999999999999987 55 88888765321 12233333222 334455444 211
Q ss_pred cChhhHHHHHHhh--cCCccEEEEeccC-----CCCchhhcccCCC
Q 041687 675 KDGAETAGVLNAI--GDDFDLILVGRRH-----DRHSQVLLGLSEW 713 (764)
Q Consensus 675 ~~g~~~~~~i~~~--~~~~DLiiVGr~~-----~~~s~~~~gl~~w 713 (764)
-+...+..++.+. ..+||+|+.|++. +.-.|.++.+-+|
T Consensus 96 ~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 96 IEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp CCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 1233343444333 1369999999986 3346777777777
No 44
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=72.53 E-value=8.3 Score=39.02 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=57.8
Q ss_pred EeeccCcchHHHHHHHHHHhhCCCe--EEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEE-ee-e---
Q 041687 602 VLFIGGPDDREALAYGARMVENHSI--MLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYIT-RS-I--- 674 (764)
Q Consensus 602 ~~f~gG~ddreAl~~a~rma~~~~v--~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e-~~-V--- 674 (764)
+.+.=.|.|.+|++.|.|+++. +. +++++-+=++. .++.+++.... +-+++...+ -. .
T Consensus 34 ~~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~------------a~~~lr~ala~--GaD~vi~v~~d~~~~~~ 98 (255)
T 1efv_B 34 VKHSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ------------CQETIRTALAM--GADRGIHVEVPPAEAER 98 (255)
T ss_dssp CCEEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT------------HHHHHHHHHHH--TCSEEEEEECCHHHHTT
T ss_pred CCccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh------------HHHHHHHHHhc--CCCEEEEEecChhhccc
Confidence 3445578999999999999987 55 88888765321 12333333222 334455443 11 1
Q ss_pred cChhhHHHHHHhh--cCCccEEEEeccC-----CCCchhhcccCCC
Q 041687 675 KDGAETAGVLNAI--GDDFDLILVGRRH-----DRHSQVLLGLSEW 713 (764)
Q Consensus 675 ~~g~~~~~~i~~~--~~~~DLiiVGr~~-----~~~s~~~~gl~~w 713 (764)
-+...+..++.+. ..+||+|+.|++. +.-.|.++.+-+|
T Consensus 99 ~~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 99 LGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp CCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 1233333333333 1369999999986 2346777777777
No 45
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=70.98 E-value=6.8 Score=41.22 Aligned_cols=55 Identities=7% Similarity=-0.010 Sum_probs=40.0
Q ss_pred eeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhc
Q 041687 598 ISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMT 660 (764)
Q Consensus 598 ~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~ 660 (764)
.++++.|.||+|+--.|.++.+.....+..+.++++.+...+ ..+.++++++..+
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~--------~et~~~v~~~~~~ 101 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF--------QEMYRFRDQMVEE 101 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC--------HHHHHHHHHHHHT
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC--------HHHHHHHHHHHHH
Confidence 378999999999999999998887644556778887654322 1345677777665
No 46
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=62.30 E-value=27 Score=38.13 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=60.8
Q ss_pred eeEEEeeccCcchHHHHHHHHHHhhC-CCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcccCCCcEEEEEeee-c
Q 041687 598 ISVCVLFIGGPDDREALAYGARMVEN-HSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTCINNSNVEYITRSI-K 675 (764)
Q Consensus 598 ~~i~~~f~gG~ddreAl~~a~rma~~-~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~~~~~~v~y~e~~V-~ 675 (764)
.+|++.+.||+|.--.|.+..++.+. .+.++.++++...-. .+.+.|.++++++..+.. - .....+..+ +
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr------~~s~~~~~~v~~~~~~lg-i-~~~v~~~~~~~ 85 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS------ANADAWVTHCENVCQQWQ-V-PLVVERVQLAQ 85 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC------SSHHHHHHHHHHHHHHTT-C-CEEEECCCCCC
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC------cccHHHHHHHHHHHHHcC-C-cEEEEEecCCC
Confidence 58999999999999999999988877 889999999964321 122245667777765522 1 122112222 1
Q ss_pred Ch--hh-HH-----HHHHhhcCCccEEEEeccCC
Q 041687 676 DG--AE-TA-----GVLNAIGDDFDLILVGRRHD 701 (764)
Q Consensus 676 ~g--~~-~~-----~~i~~~~~~~DLiiVGr~~~ 701 (764)
.| .| .. .++.+.+.++|.++.|-|.+
T Consensus 86 ~~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~d 119 (433)
T 1ni5_A 86 EGLGIEAQARQARYQAFARTLLPGEVLVTAQHLD 119 (433)
T ss_dssp SSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhCCeEEeeccch
Confidence 12 11 11 13455566799999998754
No 47
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=56.92 E-value=25 Score=38.78 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=45.1
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhc
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMT 660 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~ 660 (764)
..++++.+.||+|.--.|.+..++.+..+.++.++++...-. ..+...|.++++++..+
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr-----g~~s~~~~~~v~~~~~~ 76 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR-----GRESEEEMEFVKRFCVE 76 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC-----THHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC-----ccccHHHHHHHHHHHHH
Confidence 358999999999999999999999888888999999974321 01233566777777765
No 48
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=55.55 E-value=45 Score=34.47 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=55.0
Q ss_pred eeEEEeeccCcchHHHHHHHHHHh-h-----------------CCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHh
Q 041687 598 ISVCVLFIGGPDDREALAYGARMV-E-----------------NHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRM 659 (764)
Q Consensus 598 ~~i~~~f~gG~ddreAl~~a~rma-~-----------------~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~ 659 (764)
.++++.|.||+|+--.|.++.+.. + .++.++.++++.+...+ ..+.+|++++..
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~f--------pet~~fv~~~~~ 125 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF--------PTLENFVLETSE 125 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC--------HHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCC--------HHHHHHHHHHHH
Confidence 479999999999999999888763 1 13566788888654332 245677777776
Q ss_pred cccCCCcEEEEEeee----cCh-hhHHHHHHhhcCCccEEEEeccCCC
Q 041687 660 TCINNSNVEYITRSI----KDG-AETAGVLNAIGDDFDLILVGRRHDR 702 (764)
Q Consensus 660 ~~~~~~~v~y~e~~V----~~g-~~~~~~i~~~~~~~DLiiVGr~~~~ 702 (764)
+.. +....... ..+ .+...-..+.....+.+++|.+.+.
T Consensus 126 ~yg----l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 126 RYC----LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp HTT----EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred HcC----CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 532 11111111 111 1112222233345789999998754
No 49
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=52.34 E-value=53 Score=31.66 Aligned_cols=51 Identities=8% Similarity=-0.113 Sum_probs=35.8
Q ss_pred eeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhc
Q 041687 598 ISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMT 660 (764)
Q Consensus 598 ~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~ 660 (764)
.+|++.|.||+|+--.|.++.+.. + ++.++++.+...+ ..+.++++++..+
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~--~--~v~~v~vd~g~~~--------~e~~~~v~~~~~~ 95 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTDTGYLF--------PETYRFIDELTDK 95 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS--T--TCEEEEEECSCBC--------HHHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC--C--CCeEEEeeCCCCC--------HHHHHHHHHHHHH
Confidence 389999999999999998888874 3 3567777644221 2345677777665
No 50
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=41.95 E-value=30 Score=35.86 Aligned_cols=92 Identities=17% Similarity=0.071 Sum_probs=52.8
Q ss_pred eeEEEeeccCcchHHHHHHHHHHh-h-----------------CCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHh
Q 041687 598 ISVCVLFIGGPDDREALAYGARMV-E-----------------NHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRM 659 (764)
Q Consensus 598 ~~i~~~f~gG~ddreAl~~a~rma-~-----------------~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~ 659 (764)
.++++.|.||+|+--.|.++.+.- + .|...+.|+++-+...|. ...+|+++...
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~Fp--------ET~ef~d~~~~ 130 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFK--------TLENFIEETSL 130 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCH--------HHHHHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCH--------HHHHHHHHHHH
Confidence 369999999999999999987742 1 133567788876655542 23566666665
Q ss_pred cccCCCcEEEEEeeecCh---hhHHHHHHhhcCCccEEEEeccCC
Q 041687 660 TCINNSNVEYITRSIKDG---AETAGVLNAIGDDFDLILVGRRHD 701 (764)
Q Consensus 660 ~~~~~~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiiVGr~~~ 701 (764)
++.- +-+.| ..+.+ .+-..-+++....+|.++.|.|.+
T Consensus 131 ~ygL-~L~v~---~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 131 RYSL-SLYES---DRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp HTTE-EEEEC---CTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred HhCC-cEEEe---CCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 5321 11111 11111 122334455544699999999975
No 51
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=39.13 E-value=4.7 Score=27.17 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhccc
Q 041687 164 NSLKTVAALESTISIHVILALLSDLKL 190 (764)
Q Consensus 164 ~~~l~l~~~ls~Ts~~vv~~iL~elkl 190 (764)
..++.+|+++|.|++..+..++++++.
T Consensus 4 ~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 4 KDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 446788999999999999999999885
No 52
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=39.03 E-value=38 Score=35.11 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=42.3
Q ss_pred ceeEEEeeccCcchHHHHHHHHHHhhCCCeE-EEEEEeeecCCCCCCCcchhhhHHHHHHHHHhc
Q 041687 597 TISVCVLFIGGPDDREALAYGARMVENHSIM-LTIIRFIAMNHTTNDNLIEESCDLNMINGFRMT 660 (764)
Q Consensus 597 ~~~i~~~f~gG~ddreAl~~a~rma~~~~v~-ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~ 660 (764)
..++++.+.||+|.--.+.++.+..+..+.+ ++++++..... .+...|.++++++..+
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r------~~s~~~~~~v~~~a~~ 82 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR------ESAERDEEFCKEFAKE 82 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS------THHHHHHHHHHHHHHH
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC------cccHHHHHHHHHHHHH
Confidence 3589999999999999999998887777777 88898864321 1223456667666654
No 53
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=32.48 E-value=43 Score=33.68 Aligned_cols=54 Identities=11% Similarity=0.074 Sum_probs=39.0
Q ss_pred eEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCCcchhhhHHHHHHHHHhcc
Q 041687 599 SVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAMNHTTNDNLIEESCDLNMINGFRMTC 661 (764)
Q Consensus 599 ~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~~~~~~~~~~e~~~d~~~~~e~~~~~ 661 (764)
++++.|.||+|+--.|.++.+.... +.++.++++.+...+ ..+.++++++..+.
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~~--------~et~~~v~~~~~~~ 96 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHHF--------PQTLTLKNEIEKKY 96 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCBC--------HHHHHHHHHHHHHH
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCCC--------HHHHHHHHHHHHHh
Confidence 7899999999999999999888764 556677877554332 13456777776653
No 54
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.87 E-value=1.2e+02 Score=30.66 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=23.0
Q ss_pred eeEEEeeccCc---chHHHHHHHHHHhhCCCeEEEEEEee
Q 041687 598 ISVCVLFIGGP---DDREALAYGARMVENHSIMLTIIRFI 634 (764)
Q Consensus 598 ~~i~~~f~gG~---ddreAl~~a~rma~~~~v~ltvlr~~ 634 (764)
+|| ++|.+|+ |+.+...+|+++.+ .++.++++-|=
T Consensus 108 ~rI-Ilf~ds~~~~~~~~l~~lak~lkk-~gI~v~vIgFG 145 (268)
T 4b4t_W 108 QRI-VAFVCSPISDSRDELIRLAKTLKK-NNVAVDIINFG 145 (268)
T ss_dssp EEE-EEEECSCCSSCHHHHHHHHHHHHH-HTEEEEEEEES
T ss_pred eEE-EEEECCCCCCCHHHHHHHHHHHHH-cCCEEEEEEeC
Confidence 444 5666654 44555666655554 58999999985
No 55
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=28.73 E-value=3.3e+02 Score=25.73 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=27.8
Q ss_pred eeEEEeeccCcchHHHHHHHHHHhhCCCeEEEEEEeeec
Q 041687 598 ISVCVLFIGGPDDREALAYGARMVENHSIMLTIIRFIAM 636 (764)
Q Consensus 598 ~~i~~~f~gG~ddreAl~~a~rma~~~~v~ltvlr~~~~ 636 (764)
+++++.+.||.|.--++.++.+ .+.+++.+++...
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~ 41 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFG 41 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECS
T ss_pred CeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCC
Confidence 5899999999999888876654 4577888888644
Done!