BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041688
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C5DBS6|AIM9_LACTC Altered inheritance of mitochondria protein 9, mitochondrial
OS=Lachancea thermotolerans (strain ATCC 56472 / CBS
6340 / NRRL Y-8284) GN=AIM9 PE=3 SV=1
Length = 619
Score = 34.7 bits (78), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 164 LKEVEEVTF------TAFESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINE 217
L E E+V + T + L + ++S + KL+R +AC E KND+ E
Sbjct: 471 LSEAEKVQYQFMYKRTRNQHLWESALNKNFNKLISAVAPPVKLLRSPYVACVERKNDM-E 529
Query: 218 FGKVDAALIDHKTIKSYNIFCLQNQLKELESSIQYLEEGLESLSRRL 264
+ VD +LI + + + +F + E + ++Y EE L+ S L
Sbjct: 530 YLLVDESLIQLREV--WEVFAKNKLVSEKKFPLEYTEEQLQKHSTDL 574
>sp|Q06947|A85B_MYCAV Diacylglycerol acyltransferase/mycolyltransferase Ag85B
OS=Mycobacterium avium GN=fbpB PE=3 SV=1
Length = 330
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 117 ETELTSEIKKYLASRKAVKKTIHKASG 143
ET LTSE+ YLAS K VK+T + A G
Sbjct: 138 ETFLTSELPSYLASNKGVKRTGNAAVG 164
>sp|A7TRX9|AIM9_VANPO Altered inheritance of mitochondria protein 9, mitochondrial
OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
70294) GN=AIM9 PE=3 SV=1
Length = 639
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 178 LLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKSYNIF 237
L + + +S + KL+R IA E K D E+ VD A+I K I ++IF
Sbjct: 493 LWEMAFNKTNPEFISIVAPPVKLLRSPYIAAIERKTD-EEYILVDEAMIQLKEI--WDIF 549
Query: 238 CLQNQLKELESSIQYLEEGLESLSRRLIKARVSLL 272
+K I+Y E LE + L+K L+
Sbjct: 550 TKNGLVKNSPYPIEYTTEQLEQHGKDLLKFHEKLI 584
>sp|Q8CG71|P3H2_MOUSE Prolyl 3-hydroxylase 2 OS=Mus musculus GN=Leprel1 PE=2 SV=1
Length = 703
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 200 LIRPKRIACREDKNDINEFGKVDAALIDHKT---IKSYNIFCLQNQLKELESSIQYLEEG 256
+ P+ + ++D D +V+A L+D + ++SYN + + ES+I+Y E+
Sbjct: 172 MANPEHMEMQQDLEDYKATARVEAPLLDREAKPHLESYNAGVKHYEADDFESAIKYFEQA 231
Query: 257 L 257
L
Sbjct: 232 L 232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,337,244
Number of Sequences: 539616
Number of extensions: 3041447
Number of successful extensions: 12555
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 12476
Number of HSP's gapped (non-prelim): 211
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)