Query 041688
Match_columns 277
No_of_seqs 111 out of 312
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:26:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pnv_A Small conductance calci 64.9 13 0.00043 24.2 4.7 30 235-264 10-39 (43)
2 1mof_A Moloney murine leukemia 49.0 28 0.00097 23.7 4.5 30 242-271 3-32 (55)
3 3ljm_A Coil Ser L9C; de novo d 47.4 31 0.0011 20.2 3.8 21 239-259 6-26 (31)
4 2w6b_A RHO guanine nucleotide 43.5 75 0.0026 21.6 6.8 43 94-143 10-52 (56)
5 2akf_A Coronin-1A; coiled coil 42.9 23 0.0008 21.1 2.9 16 236-251 15-30 (32)
6 2ket_A Cathelicidin-6; antimic 42.3 21 0.00073 20.2 2.5 15 127-141 3-17 (27)
7 3dyt_A Sorting nexin-9; 3-heli 40.4 1.7E+02 0.0059 26.5 10.1 61 38-108 230-290 (366)
8 1y4m_A HERV-FRD_6P24.1 proviru 36.9 20 0.00068 24.3 2.2 28 244-271 3-30 (53)
9 3c3f_A Alpha/beta peptide with 31.9 89 0.0031 19.1 4.4 24 237-260 4-27 (34)
10 4akv_A Sorting nexin-33; trans 31.3 3.1E+02 0.011 25.1 10.8 62 38-109 250-311 (386)
11 2p22_C Protein SRN2; endosome, 30.9 2.4E+02 0.0081 23.7 11.8 112 17-135 61-175 (192)
12 3kyj_A CHEA3, putative histidi 29.8 62 0.0021 25.8 4.5 29 236-264 17-51 (144)
13 2l5g_B Putative uncharacterize 25.6 65 0.0022 20.7 3.1 29 217-249 10-38 (42)
14 3n06_A Prolactin, PRL; PH depe 25.5 77 0.0026 26.4 4.5 27 238-264 98-124 (186)
15 2lw1_A ABC transporter ATP-bin 25.2 68 0.0023 23.3 3.7 20 241-260 22-41 (89)
16 3onj_A T-snare VTI1; helix, HA 25.0 1.4E+02 0.0047 22.1 5.4 36 234-269 34-74 (97)
17 2lch_A Protein OR38; structura 23.6 1.1E+02 0.0037 22.7 4.7 29 236-264 12-46 (113)
18 1kd8_A GABH AIV, GCN4 acid bas 23.3 87 0.003 19.4 3.2 25 238-262 5-29 (36)
19 1ax8_A Obesity protein, leptin 22.2 1.6E+02 0.0054 23.9 5.5 83 17-108 46-138 (146)
20 2z5i_A TM, general control pro 21.1 1.2E+02 0.004 20.1 3.8 21 238-258 9-29 (52)
21 1zme_C Proline utilization tra 20.6 86 0.003 21.0 3.3 22 236-257 46-67 (70)
22 2yy0_A C-MYC-binding protein; 20.4 1.6E+02 0.0053 19.6 4.4 33 233-265 18-50 (53)
No 1
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=64.93 E-value=13 Score=24.20 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Q 041688 235 NIFCLQNQLKELESSIQYLEEGLESLSRRL 264 (277)
Q Consensus 235 ~~~~~~~~Le~LE~~I~~lE~gle~lFR~L 264 (277)
-+.+++.+-++||..|..||..++.+-+.+
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999876554
No 2
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=48.98 E-value=28 Score=23.72 Aligned_cols=30 Identities=43% Similarity=0.606 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHh
Q 041688 242 QLKELESSIQYLEEGLESLSRRLIKARVSL 271 (277)
Q Consensus 242 ~Le~LE~~I~~lE~gle~lFR~LI~tRVsL 271 (277)
-+++++.+|..|+..+..+--..+|+|-+|
T Consensus 3 dl~~~~~si~~l~~ql~sla~vvlQNRraL 32 (55)
T 1mof_A 3 DLREVEKSISNLEKSLTSLSEVVLQNRRGL 32 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999886
No 3
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=47.37 E-value=31 Score=20.17 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHhhHhH
Q 041688 239 LQNQLKELESSIQYLEEGLES 259 (277)
Q Consensus 239 ~~~~Le~LE~~I~~lE~gle~ 259 (277)
+.++..+||.-++.||..+|.
T Consensus 6 lekkcaalesklqalekklea 26 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555554
No 4
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=43.55 E-value=75 Score=21.59 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=27.9
Q ss_pred HHHHHhHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 041688 94 NALLQSKQSVQGLQSALRRRKGDETELTSEIKKYLASRKAVKKTIHKASG 143 (277)
Q Consensus 94 d~l~~lke~v~eLqsalRRr~~~~~~~~~~v~~y~~~rkk~kK~i~k~l~ 143 (277)
|+.=++|..|++||--..+-. ..+..=-++||.+.+-+.|.+.
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~-------k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMK-------KSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 455566667777776555532 2344456788988888888754
No 5
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=42.91 E-value=23 Score=21.05 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 041688 236 IFCLQNQLKELESSIQ 251 (277)
Q Consensus 236 ~~~~~~~Le~LE~~I~ 251 (277)
+|.+|+++..||..++
T Consensus 15 vq~lq~r~drle~tvq 30 (32)
T 2akf_A 15 VQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5777777777777665
No 6
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=42.33 E-value=21 Score=20.24 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q 041688 127 YLASRKAVKKTIHKA 141 (277)
Q Consensus 127 y~~~rkk~kK~i~k~ 141 (277)
|-|+|||.||-++|+
T Consensus 3 fkrfrkkfkklfkkl 17 (27)
T 2ket_A 3 FKRFRKKFKKLFKKL 17 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 568899988888776
No 7
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=40.40 E-value=1.7e+02 Score=26.53 Aligned_cols=61 Identities=8% Similarity=0.094 Sum_probs=39.4
Q ss_pred cHHHHHHhhHHHHHhHHHHHcCchhHHHHhhhhhhhhHHhhhhhhhHHHHhhhhHHHHHHHhHHHHHHHHH
Q 041688 38 NIGHIINGLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQS 108 (277)
Q Consensus 38 s~~~~L~~L~~l~~~v~~Ll~lP~~q~aL~~~~~~k~vee~LD~Sl~LLDvC~~~~d~l~~lke~v~eLqs 108 (277)
.+..+|..+++.|+.+.++..- | -..+...+.|.-=..++++++++|+|-.=+..++..+.
T Consensus 230 ~L~~al~~l~~~~~~i~~l~~~---q-------a~~d~~~l~E~L~~Y~~~l~avKd~l~~r~~aL~k~~e 290 (366)
T 3dyt_A 230 DLNDAITEAGKTYEEIASLVAE---Q-------PKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKE 290 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---S-------GGGTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---H-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888888888888888732 1 12344555566556777888888877655544444443
No 8
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=36.88 E-value=20 Score=24.32 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHh
Q 041688 244 KELESSIQYLEEGLESLSRRLIKARVSL 271 (277)
Q Consensus 244 e~LE~~I~~lE~gle~lFR~LI~tRVsL 271 (277)
++|+.+|..|+..+..+--..+|+|-+|
T Consensus 3 ~~l~~sl~~l~~ql~sla~vvlQNRraL 30 (53)
T 1y4m_A 3 DTMAKALTTMQEQIDSLAAVVLQNRRGL 30 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999886
No 9
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=31.89 E-value=89 Score=19.08 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHH
Q 041688 237 FCLQNQLKELESSIQYLEEGLESL 260 (277)
Q Consensus 237 ~~~~~~Le~LE~~I~~lE~gle~l 260 (277)
..+-.+.|+|=.+-.+||.+++.+
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344456667777777788888776
No 10
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=31.33 E-value=3.1e+02 Score=25.14 Aligned_cols=62 Identities=5% Similarity=0.049 Sum_probs=37.9
Q ss_pred cHHHHHHhhHHHHHhHHHHHcCchhHHHHhhhhhhhhHHhhhhhhhHHHHhhhhHHHHHHHhHHHHHHHHHH
Q 041688 38 NIGHIINGLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSA 109 (277)
Q Consensus 38 s~~~~L~~L~~l~~~v~~Ll~lP~~q~aL~~~~~~k~vee~LD~Sl~LLDvC~~~~d~l~~lke~v~eLqsa 109 (277)
.+..+|+.+++.++.+.++..- +-......+.|.--...+++++++|.|-.-+..++..+.+
T Consensus 250 ~Ls~aL~~l~~~~e~i~~l~~~----------Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~k~~ea 311 (386)
T 4akv_A 250 ALNSAISHTGRTYEAIGEMFAE----------QPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKES 311 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------GGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777888777776622 1123445555555556777788888776655544444433
No 11
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=30.92 E-value=2.4e+02 Score=23.66 Aligned_cols=112 Identities=13% Similarity=0.145 Sum_probs=55.2
Q ss_pred CCChhhHHHHHHhhhhccccccHHHHHHhhHHHHHhHHHHHcCchhHHHHhhhhhhhh--HHhhhhhhhHHHHhhhhHHH
Q 041688 17 HPFTSEVEETLSRLRSSQAASNIGHIINGLQDLHDCVDKILQLPLTQQALSQVSNRKF--VDELVNGSLRILDICSIAQN 94 (277)
Q Consensus 17 hP~~~~~e~~L~~L~~~~~sss~~~~L~~L~~l~~~v~~Ll~lP~~q~aL~~~~~~k~--vee~LD~Sl~LLDvC~~~~d 94 (277)
||....+++++..+++.. ..+......|.++=..+.+.+ ..-+.|...+..|| .++.+-++.---=++..++.
T Consensus 61 l~~~q~~~~~~e~l~s~a--e~ll~l~~~Le~~r~~l~~~l---~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~ 135 (192)
T 2p22_C 61 FNPLTDFAGKIHAFRDQF--KQLEENFEDLHEQKDKVQALL---ENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQ 135 (192)
T ss_dssp GSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 555666666666665443 233344444555555555544 22233444444444 22233222222233555566
Q ss_pred HHHHhHHHHHHHHHHHHhcCC-CCchhhHHHHHHHHHHHHHH
Q 041688 95 ALLQSKQSVQGLQSALRRRKG-DETELTSEIKKYLASRKAVK 135 (277)
Q Consensus 95 ~l~~lke~v~eLqsalRRr~~-~~~~~~~~v~~y~~~rkk~k 135 (277)
++....+--.++.--+. +| ++..+..=|..|...|+...
T Consensus 136 a~~e~eeeS~~l~~~F~--~~~~e~dv~~Fl~~y~~~R~~yH 175 (192)
T 2p22_C 136 NTKKLDEESSQLETTTR--SIDSADDLDQFIKNYLDIRTQYH 175 (192)
T ss_dssp HHHHHHHHHHHHHHSCS--CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc--CCcccchHHHHHHHHHHHHHHHH
Confidence 66655555555543331 11 14556666777777777664
No 12
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=29.82 E-value=62 Score=25.76 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh------HhHHHHHH
Q 041688 236 IFCLQNQLKELESSIQYLEEG------LESLSRRL 264 (277)
Q Consensus 236 ~~~~~~~Le~LE~~I~~lE~g------le~lFR~L 264 (277)
++++.+.|+.+|..+..+|.+ ++.+||.+
T Consensus 17 leEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~ 51 (144)
T 3kyj_A 17 ADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAV 51 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 467788999999999988875 67888865
No 13
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.64 E-value=65 Score=20.69 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=19.0
Q ss_pred chhhhhhHHhhccccccchHHHHHHHHHHHHHH
Q 041688 217 EFGKVDAALIDHKTIKSYNIFCLQNQLKELESS 249 (277)
Q Consensus 217 E~~~vDaal~~~~~~~~~~~~~~~~~Le~LE~~ 249 (277)
-+++||+...- ..+++..+|++++.||..
T Consensus 10 kI~kVdrEI~K----te~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 10 NMDRVDREITM----VEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 35667766510 145678888888888864
No 14
>3n06_A Prolactin, PRL; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3nce_A 3mzg_A 3ncc_A 2q98_A 3d48_P 3ncb_A 3n0p_A 3ncf_A 1n9d_A 1rw5_A 3npz_A 3ew3_A
Probab=25.46 E-value=77 Score=26.36 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHH
Q 041688 238 CLQNQLKELESSIQYLEEGLESLSRRL 264 (277)
Q Consensus 238 ~~~~~Le~LE~~I~~lE~gle~lFR~L 264 (277)
.+..++.++|..+.+|++|++.+++++
T Consensus 98 ~il~Kakei~e~~~~L~egi~~i~~~~ 124 (186)
T 3n06_A 98 AILSKAVEIEEQTKRLLERMELIVSQV 124 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455688889999999999999988876
No 15
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.15 E-value=68 Score=23.33 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhHhHH
Q 041688 241 NQLKELESSIQYLEEGLESL 260 (277)
Q Consensus 241 ~~Le~LE~~I~~lE~gle~l 260 (277)
+.|+.|+.-|+.||..++.|
T Consensus 22 rEle~le~~Ie~LE~~i~~l 41 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEAL 41 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444
No 16
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=24.97 E-value=1.4e+02 Score=22.08 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHhHH-----HHHHHHHHH
Q 041688 234 YNIFCLQNQLKELESSIQYLEEGLESL-----SRRLIKARV 269 (277)
Q Consensus 234 ~~~~~~~~~Le~LE~~I~~lE~gle~l-----FR~LI~tRV 269 (277)
..+..+...+++.+..|+.+|-++..+ +|.-.++|+
T Consensus 34 ~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~kl 74 (97)
T 3onj_A 34 TTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKL 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 447788889999999999999999888 787777765
No 17
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=23.57 E-value=1.1e+02 Score=22.74 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh------hHhHHHHHH
Q 041688 236 IFCLQNQLKELESSIQYLEE------GLESLSRRL 264 (277)
Q Consensus 236 ~~~~~~~Le~LE~~I~~lE~------gle~lFR~L 264 (277)
++++.+.++.++..+..+|. -++.+||.+
T Consensus 12 ~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~ 46 (113)
T 2lch_A 12 TDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLV 46 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35667788888888888874 466788864
No 18
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=23.27 E-value=87 Score=19.38 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHH
Q 041688 238 CLQNQLKELESSIQYLEEGLESLSR 262 (277)
Q Consensus 238 ~~~~~Le~LE~~I~~lE~gle~lFR 262 (277)
.+-.+.|+|..+-.+||.+++.|=.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445777888888888888887643
No 19
>1ax8_A Obesity protein, leptin; helical cytokine, hematopoietic factor, diabetes, C; 2.40A {Homo sapiens} SCOP: a.26.1.1
Probab=22.22 E-value=1.6e+02 Score=23.91 Aligned_cols=83 Identities=22% Similarity=0.217 Sum_probs=48.5
Q ss_pred CCC--hhhHHHHHHhh----hhccc--cccHHHHHHhhHHHHHhHHHHHcCchhHHHHhhhhhhhhHHhhhhhhhHHHH-
Q 041688 17 HPF--TSEVEETLSRL----RSSQA--ASNIGHIINGLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILD- 87 (277)
Q Consensus 17 hP~--~~~~e~~L~~L----~~~~~--sss~~~~L~~L~~l~~~v~~Ll~lP~~q~aL~~~~~~k~vee~LD~Sl~LLD- 87 (277)
||. +..+.+.|.-. -+... -.-|...|+.|.++........+.|..|- .+.+ .+|+...-.-
T Consensus 46 ~pi~gLssm~~TL~~yQ~iL~sLp~~~v~QI~~DlsnLr~lL~~l~~s~~C~~~~~-----~~~~----~l~~l~~~~~~ 116 (146)
T 1ax8_A 46 HPILTLSKMDQTLAVYQQILTSMPSRNVIQISNDLENLRDLLHVLAFSKSCHLPEA-----SGLE----TLDSLGGVLEA 116 (146)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC-----CCCS----CGGGGHHHHCB
T ss_pred CccccHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-----CCcc----hhHHHHHHHHH
Confidence 887 66777777322 22211 23377888888888888888888886541 2222 2222222222
Q ss_pred -hhhhHHHHHHHhHHHHHHHHH
Q 041688 88 -ICSIAQNALLQSKQSVQGLQS 108 (277)
Q Consensus 88 -vC~~~~d~l~~lke~v~eLqs 108 (277)
.+++--.||.++|+.++.+.-
T Consensus 117 ~~~s~~~vAL~RLk~~L~~ll~ 138 (146)
T 1ax8_A 117 SGYSTEVVALSRLQGSLQDMLW 138 (146)
T ss_dssp TTBCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHH
Confidence 245556677777777776643
No 20
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.05 E-value=1.2e+02 Score=20.15 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHh
Q 041688 238 CLQNQLKELESSIQYLEEGLE 258 (277)
Q Consensus 238 ~~~~~Le~LE~~I~~lE~gle 258 (277)
-+-+....||..|++||..+.
T Consensus 9 fAERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444566778888888886654
No 21
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=20.65 E-value=86 Score=20.97 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH
Q 041688 236 IFCLQNQLKELESSIQYLEEGL 257 (277)
Q Consensus 236 ~~~~~~~Le~LE~~I~~lE~gl 257 (277)
++.+..+++.||.-|..|+..+
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665544
No 22
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.36 E-value=1.6e+02 Score=19.60 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=21.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHH
Q 041688 233 SYNIFCLQNQLKELESSIQYLEEGLESLSRRLI 265 (277)
Q Consensus 233 ~~~~~~~~~~Le~LE~~I~~lE~gle~lFR~LI 265 (277)
..+++.++...++|..-++.|...++.+-++|-
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777777777777777777666666553
Done!