Query 041688
Match_columns 277
No_of_seqs 111 out of 312
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 16:26:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041688.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041688hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wu9a1 a.245.1.1 (A:191-249) 38.6 26 0.0019 22.6 4.8 32 235-266 2-33 (59)
2 d1tqga_ a.24.10.3 (A:) Chemota 25.8 41 0.003 22.9 4.5 28 237-264 12-45 (105)
3 d1q0qa1 a.69.3.1 (A:301-398) 1 23.2 70 0.0051 22.0 5.3 62 67-141 35-96 (98)
4 d1vp7a_ a.7.13.1 (A:) Exonucle 22.0 74 0.0054 20.6 4.9 29 102-130 11-39 (68)
5 d2hkja2 d.14.1.3 (A:307-470) T 20.4 13 0.00092 29.0 0.6 44 91-141 119-162 (164)
6 d2g5ca1 a.100.1.12 (A:201-310) 16.2 90 0.0065 21.7 4.6 46 86-137 60-109 (110)
7 d1b5la_ a.26.1.3 (A:) Interfer 15.2 2.2E+02 0.016 21.2 8.8 33 48-81 56-88 (164)
8 d1i5na_ a.24.10.3 (A:) Chemota 14.8 57 0.0042 22.8 3.2 19 237-255 11-29 (128)
9 d1u5pa2 a.7.1.1 (A:1772-1872) 14.6 1.1E+02 0.0082 19.6 4.7 30 233-262 30-59 (101)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 14.1 94 0.0069 21.3 4.2 33 236-268 67-99 (107)
No 1
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.62 E-value=26 Score=22.55 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 041688 235 NIFCLQNQLKELESSIQYLEEGLESLSRRLIK 266 (277)
Q Consensus 235 ~~~~~~~~Le~LE~~I~~lE~gle~lFR~LI~ 266 (277)
++..+..++.+|...++++|.+=+.-|-.|=.
T Consensus 2 e~~~L~~ei~elk~~v~~lEkERdFYF~KLRd 33 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKERDFYFGKLRN 33 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999987743
No 2
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=25.81 E-value=41 Score=22.91 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh------HhHHHHHH
Q 041688 237 FCLQNQLKELESSIQYLEEG------LESLSRRL 264 (277)
Q Consensus 237 ~~~~~~Le~LE~~I~~lE~g------le~lFR~L 264 (277)
.++.++|+.++..|..+|.+ ++.+||.+
T Consensus 12 ~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~ 45 (105)
T d1tqga_ 12 DETKEYLQNLNDTLLELEKNPEDMELINEAFRAL 45 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45566777777777776643 56667654
No 3
>d1q0qa1 a.69.3.1 (A:301-398) 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.20 E-value=70 Score=21.97 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=42.8
Q ss_pred hhhhhhhhHHhhhhhhhHHHHhhhhHHHHHHHhHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 041688 67 SQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETELTSEIKKYLASRKAVKKTIHKA 141 (277)
Q Consensus 67 ~~~~~~k~vee~LD~Sl~LLDvC~~~~d~l~~lke~v~eLqsalRRr~~~~~~~~~~v~~y~~~rkk~kK~i~k~ 141 (277)
..--|+-.|+-.|++-+..+|+......++.... .....+++.-..-.-.+|+.+++.|.|+
T Consensus 35 lNAANEvaV~~FL~~kI~F~dI~~~i~~~l~~~~-------------~~~~~~l~dI~~~d~~aR~~a~~~i~~l 96 (98)
T d1q0qa1 35 LNAANEITVAAFLAQQIRFTDIAALNLSVLEKMD-------------MREPQCVDDVLSVDANAREVARKEVMRL 96 (98)
T ss_dssp HHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHCC-------------CCCCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcc-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999999988766654321 1123445555555566788888877764
No 4
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=22.05 E-value=74 Score=20.60 Aligned_cols=29 Identities=14% Similarity=0.231 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 041688 102 SVQGLQSALRRRKGDETELTSEIKKYLAS 130 (277)
Q Consensus 102 ~v~eLqsalRRr~~~~~~~~~~v~~y~~~ 130 (277)
.+.+|+..+++-..|+.+++..++.|=+-
T Consensus 11 ~l~~LE~IV~~LE~g~l~Leesl~~ye~G 39 (68)
T d1vp7a_ 11 ALAELESLVSAMENGTLPLEQSLSAYRRG 39 (68)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 34445555555555788899999988444
No 5
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=20.36 E-value=13 Score=29.03 Aligned_cols=44 Identities=14% Similarity=0.312 Sum_probs=31.2
Q ss_pred hHHHHHHHhHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 041688 91 IAQNALLQSKQSVQGLQSALRRRKGDETELTSEIKKYLASRKAVKKTIHKA 141 (277)
Q Consensus 91 ~~~d~l~~lke~v~eLqsalRRr~~~~~~~~~~v~~y~~~rkk~kK~i~k~ 141 (277)
+.||++...-|-..|++.||+--- .++++|++-++|.++.-+|.
T Consensus 119 ~sKEaIad~~EI~~EirlAl~~~~-------R~L~~~l~kk~k~~~~~~k~ 162 (164)
T d2hkja2 119 AGKESIAEVEDIEKEIKNALMEVA-------RKLKQYLSEKRKEQEAKKKL 162 (164)
T ss_dssp TTCCCBCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcCcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh
Confidence 356777777777888888887631 46888887777776666654
No 6
>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}
Probab=16.25 E-value=90 Score=21.73 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=27.2
Q ss_pred HHhhhhHHH----HHHHhHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Q 041688 86 LDICSIAQN----ALLQSKQSVQGLQSALRRRKGDETELTSEIKKYLASRKAVKKT 137 (277)
Q Consensus 86 LDvC~~~~d----~l~~lke~v~eLqsalRRr~~~~~~~~~~v~~y~~~rkk~kK~ 137 (277)
.|+|..=++ .|-.+.+.+.++..+|.+.|. .++.+|+..-|+.++.
T Consensus 60 ~dI~~~N~~~i~~~l~~~~~~L~~~~~~l~~~D~------~~l~~~l~~a~~~R~~ 109 (110)
T d2g5ca1 60 RDIFLENKENVMKAIEGFEKSLNHLKELIVREAE------EELVEYLKEVKIKRME 109 (110)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHhc
Confidence 466655554 334445556666777766542 4677787776665543
No 7
>d1b5la_ a.26.1.3 (A:) Interferon-tau {Sheep (Ovis aries) [TaxId: 9940]}
Probab=15.17 E-value=2.2e+02 Score=21.20 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=14.3
Q ss_pred HHHHhHHHHHcCchhHHHHhhhhhhhhHHhhhhh
Q 041688 48 DLHDCVDKILQLPLTQQALSQVSNRKFVDELVNG 81 (277)
Q Consensus 48 ~l~~~v~~Ll~lP~~q~aL~~~~~~k~vee~LD~ 81 (277)
-+|+-+..++.+=.+ ..-+-.|++..+|..+.+
T Consensus 56 ~~~emlqqif~LF~~-~~s~a~W~~t~le~fl~~ 88 (164)
T d1b5la_ 56 VLYEMLQQSFNLFYT-EHSSAAWDTTLLEQLCTG 88 (164)
T ss_dssp HHHHHHHHHHHHHHH-HHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCChhccCHHHHHHHHHH
Confidence 344444444433122 222334665555555443
No 8
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=14.84 E-value=57 Score=22.84 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 041688 237 FCLQNQLKELESSIQYLEE 255 (277)
Q Consensus 237 ~~~~~~Le~LE~~I~~lE~ 255 (277)
+++.++++.++..+..+|.
T Consensus 11 ~Ea~e~l~~l~~~l~~le~ 29 (128)
T d1i5na_ 11 DEADELLADMEQHLLDLVP 29 (128)
T ss_dssp HHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666655543
No 9
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=14.65 E-value=1.1e+02 Score=19.63 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=18.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhHhHHHH
Q 041688 233 SYNIFCLQNQLKELESSIQYLEEGLESLSR 262 (277)
Q Consensus 233 ~~~~~~~~~~Le~LE~~I~~lE~gle~lFR 262 (277)
.+.++.+.++.+.++..|...+..++.+..
T Consensus 30 ~~~~~~ll~~h~~~~~~i~~~~~~~~~l~~ 59 (101)
T d1u5pa2 30 LTGVQNLRKKHKRLEAELAAHEPAIQGVLD 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345666666666666666666666665554
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=14.07 E-value=94 Score=21.31 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Q 041688 236 IFCLQNQLKELESSIQYLEEGLESLSRRLIKAR 268 (277)
Q Consensus 236 ~~~~~~~Le~LE~~I~~lE~gle~lFR~LI~tR 268 (277)
..++.++++.++..|..|+...+.+=..+-.-+
T Consensus 67 ~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~ 99 (107)
T d1fxka_ 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666655554444433
Done!