Query 041690
Match_columns 233
No_of_seqs 239 out of 2296
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:40:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 99.8 2.3E-21 5E-26 163.0 7.7 140 17-189 183-322 (406)
2 KOG0733 Nuclear AAA ATPase (VC 99.8 2.2E-20 4.7E-25 165.8 10.8 139 17-187 221-359 (802)
3 KOG0733 Nuclear AAA ATPase (VC 99.8 1.7E-19 3.7E-24 160.2 9.7 148 17-200 543-692 (802)
4 KOG0730 AAA+-type ATPase [Post 99.8 3.8E-20 8.3E-25 165.7 5.5 137 17-189 466-602 (693)
5 COG1066 Sms Predicted ATP-depe 99.8 2.1E-18 4.5E-23 147.8 11.7 167 18-203 92-258 (456)
6 KOG0736 Peroxisome assembly fa 99.8 3.1E-18 6.8E-23 155.5 10.7 144 17-192 703-846 (953)
7 PF08423 Rad51: Rad51; InterP 99.7 7.3E-17 1.6E-21 134.2 15.4 188 17-218 36-248 (256)
8 TIGR02237 recomb_radB DNA repa 99.7 1.7E-16 3.6E-21 128.3 16.1 160 16-189 9-179 (209)
9 TIGR02238 recomb_DMC1 meiotic 99.7 1.5E-16 3.2E-21 135.8 15.9 188 17-218 94-306 (313)
10 KOG0739 AAA+-type ATPase [Post 99.7 2.3E-17 4.9E-22 136.1 10.2 136 17-189 164-299 (439)
11 PLN03187 meiotic recombination 99.7 3.4E-16 7.3E-21 134.6 16.4 197 17-230 124-342 (344)
12 KOG0738 AAA+-type ATPase [Post 99.7 6.7E-17 1.5E-21 137.3 9.9 139 17-189 243-382 (491)
13 KOG0727 26S proteasome regulat 99.7 3.5E-17 7.6E-22 132.4 7.7 141 17-190 187-327 (408)
14 PRK09361 radB DNA repair and r 99.7 9.6E-16 2.1E-20 125.3 16.0 162 17-188 21-190 (225)
15 KOG0734 AAA+-type ATPase conta 99.7 6.4E-17 1.4E-21 142.1 9.0 136 18-189 336-471 (752)
16 KOG0726 26S proteasome regulat 99.7 1E-16 2.3E-21 131.9 8.5 140 17-189 217-356 (440)
17 cd01394 radB RadB. The archaea 99.7 9.8E-16 2.1E-20 124.6 14.0 164 16-189 16-187 (218)
18 PLN03186 DNA repair protein RA 99.7 2.4E-15 5.1E-20 129.5 16.7 189 17-219 121-334 (342)
19 PLN00020 ribulose bisphosphate 99.7 1.1E-16 2.4E-21 136.7 6.2 151 16-196 145-307 (413)
20 TIGR02236 recomb_radA DNA repa 99.7 6.2E-15 1.3E-19 126.2 17.1 178 17-202 93-294 (310)
21 KOG0652 26S proteasome regulat 99.7 3.1E-16 6.6E-21 127.5 8.3 147 17-197 203-351 (424)
22 PTZ00035 Rad51 protein; Provis 99.7 7.2E-15 1.6E-19 126.7 16.9 165 17-189 116-303 (337)
23 TIGR02239 recomb_RAD51 DNA rep 99.6 1.9E-14 4.2E-19 123.0 18.4 189 17-219 94-308 (316)
24 COG0468 RecA RecA/RadA recombi 99.6 1.6E-14 3.4E-19 120.6 17.3 185 17-218 58-260 (279)
25 cd00983 recA RecA is a bacter 99.6 1E-14 2.2E-19 124.3 16.4 163 16-189 52-224 (325)
26 PRK04301 radA DNA repair and r 99.6 1.7E-14 3.6E-19 123.9 17.8 177 17-201 100-299 (317)
27 PRK09354 recA recombinase A; P 99.6 1.3E-14 2.9E-19 124.5 16.8 163 16-189 57-229 (349)
28 cd01121 Sms Sms (bacterial rad 99.6 6.9E-15 1.5E-19 128.1 15.0 164 17-198 80-243 (372)
29 PRK11823 DNA repair protein Ra 99.6 1.1E-14 2.3E-19 130.1 16.3 164 17-198 78-241 (446)
30 KOG0735 AAA+-type ATPase [Post 99.6 2.4E-15 5.1E-20 136.0 10.3 136 17-188 699-834 (952)
31 COG0464 SpoVK ATPases of the A 99.6 3E-15 6.5E-20 135.8 11.1 138 17-190 274-411 (494)
32 TIGR03878 thermo_KaiC_2 KaiC d 99.6 1.1E-14 2.3E-19 121.6 13.4 155 17-188 34-204 (259)
33 KOG0737 AAA+-type ATPase [Post 99.6 6.2E-16 1.3E-20 130.9 5.5 137 17-189 125-261 (386)
34 KOG0729 26S proteasome regulat 99.6 5.9E-15 1.3E-19 120.4 10.9 139 17-188 209-347 (435)
35 TIGR00416 sms DNA repair prote 99.6 8.7E-15 1.9E-19 130.8 13.1 164 17-198 92-255 (454)
36 KOG0651 26S proteasome regulat 99.6 4.2E-15 9.2E-20 123.2 10.1 140 17-189 164-303 (388)
37 cd01393 recA_like RecA is a b 99.6 4.7E-14 1E-18 115.2 15.6 166 16-190 16-202 (226)
38 PF06745 KaiC: KaiC; InterPro 99.6 1.3E-14 2.7E-19 118.7 11.1 154 17-188 17-185 (226)
39 TIGR02012 tigrfam_recA protein 99.6 3.6E-14 7.8E-19 120.8 13.9 163 16-188 52-223 (321)
40 cd01123 Rad51_DMC1_radA Rad51_ 99.6 7E-14 1.5E-18 114.8 15.1 175 16-198 16-216 (235)
41 KOG0731 AAA+-type ATPase conta 99.6 8E-15 1.7E-19 135.1 9.9 141 17-189 342-482 (774)
42 COG1223 Predicted ATPase (AAA+ 99.6 1.5E-14 3.2E-19 117.6 8.6 134 18-188 150-283 (368)
43 TIGR03877 thermo_KaiC_1 KaiC d 99.6 2.2E-14 4.8E-19 118.2 9.9 156 17-188 19-194 (237)
44 KOG0728 26S proteasome regulat 99.5 2.6E-14 5.6E-19 115.7 9.3 140 17-189 179-318 (404)
45 KOG0741 AAA+-type ATPase [Post 99.5 2E-14 4.4E-19 126.4 8.6 151 17-200 254-413 (744)
46 PRK04328 hypothetical protein; 99.5 4.4E-14 9.4E-19 117.3 10.2 156 17-188 21-196 (249)
47 CHL00195 ycf46 Ycf46; Provisio 99.5 6.1E-14 1.3E-18 126.0 11.7 136 17-189 257-392 (489)
48 cd01124 KaiC KaiC is a circadi 99.5 1.2E-13 2.5E-18 109.4 11.4 151 21-189 1-165 (187)
49 PF00004 AAA: ATPase family as 99.5 1.3E-13 2.8E-18 102.6 10.9 131 22-187 1-131 (132)
50 PTZ00454 26S protease regulato 99.5 8.5E-14 1.8E-18 122.4 11.4 140 17-189 177-316 (398)
51 TIGR01243 CDC48 AAA family ATP 99.5 8.1E-14 1.8E-18 131.8 11.4 137 17-189 485-622 (733)
52 COG0465 HflB ATP-dependent Zn 99.5 5.1E-14 1.1E-18 127.5 9.4 151 18-201 182-334 (596)
53 TIGR03689 pup_AAA proteasome A 99.5 1.7E-13 3.7E-18 123.2 11.0 145 17-189 214-365 (512)
54 PRK03992 proteasome-activating 99.5 1.7E-13 3.6E-18 120.7 10.5 140 17-189 163-302 (389)
55 PRK05973 replicative DNA helic 99.5 3.4E-13 7.3E-18 110.4 11.4 133 17-167 62-195 (237)
56 TIGR02655 circ_KaiC circadian 99.5 2.9E-13 6.4E-18 122.3 10.9 155 17-188 261-424 (484)
57 PRK08533 flagellar accessory p 99.5 9.1E-13 2E-17 108.1 12.8 156 16-189 21-186 (230)
58 PRK09519 recA DNA recombinatio 99.4 1.8E-12 3.8E-17 121.2 14.6 160 16-188 57-228 (790)
59 TIGR01241 FtsH_fam ATP-depende 99.4 4.5E-13 9.8E-18 121.5 10.3 140 17-189 86-225 (495)
60 PRK06067 flagellar accessory p 99.4 3.4E-12 7.4E-17 104.9 14.5 155 16-189 22-188 (234)
61 PTZ00361 26 proteosome regulat 99.4 3.6E-13 7.8E-18 119.4 9.1 140 17-189 215-354 (438)
62 KOG0732 AAA+-type ATPase conta 99.4 2.4E-13 5.3E-18 128.6 8.0 153 17-200 297-451 (1080)
63 TIGR03880 KaiC_arch_3 KaiC dom 99.4 1E-12 2.2E-17 107.3 10.7 158 17-188 14-178 (224)
64 TIGR03881 KaiC_arch_4 KaiC dom 99.4 3.7E-12 8E-17 104.3 11.5 156 16-188 17-189 (229)
65 CHL00176 ftsH cell division pr 99.4 2.3E-12 5E-17 119.2 10.7 139 18-189 215-353 (638)
66 KOG0744 AAA+-type ATPase [Post 99.4 9.3E-13 2E-17 110.0 7.2 156 7-188 165-326 (423)
67 TIGR01243 CDC48 AAA family ATP 99.4 2.8E-12 6.1E-17 121.5 11.4 136 17-188 210-345 (733)
68 TIGR02655 circ_KaiC circadian 99.4 6.3E-12 1.4E-16 113.7 13.0 154 16-188 18-191 (484)
69 KOG0740 AAA+-type ATPase [Post 99.4 1.1E-12 2.4E-17 114.5 7.8 157 17-209 184-342 (428)
70 TIGR01242 26Sp45 26S proteasom 99.4 4E-12 8.7E-17 111.1 10.2 140 17-189 154-293 (364)
71 CHL00206 ycf2 Ycf2; Provisiona 99.4 1.9E-12 4E-17 128.1 8.5 154 17-188 1628-1803(2281)
72 cd01120 RecA-like_NTPases RecA 99.3 8.5E-12 1.8E-16 95.8 9.7 153 21-186 1-163 (165)
73 cd01122 GP4d_helicase GP4d_hel 99.3 4E-11 8.7E-16 100.6 13.2 162 17-189 28-229 (271)
74 PRK09302 circadian clock prote 99.3 1.5E-11 3.2E-16 112.1 11.1 157 17-188 29-201 (509)
75 KOG0730 AAA+-type ATPase [Post 99.3 9E-12 1.9E-16 112.5 9.4 134 17-188 216-350 (693)
76 COG1126 GlnQ ABC-type polar am 99.3 3.6E-11 7.8E-16 95.6 11.7 156 3-188 9-211 (240)
77 PRK09302 circadian clock prote 99.3 2.4E-11 5.2E-16 110.7 10.4 156 17-189 271-435 (509)
78 PF00154 RecA: recA bacterial 99.2 4.5E-10 9.8E-15 95.7 16.0 161 17-188 51-221 (322)
79 PRK10733 hflB ATP-dependent me 99.2 3.7E-11 8.1E-16 112.0 10.2 138 19-189 185-322 (644)
80 COG1120 FepC ABC-type cobalami 99.2 1.8E-10 4E-15 95.0 11.7 144 17-188 26-214 (258)
81 KOG0742 AAA+-type ATPase [Post 99.2 4.6E-11 1E-15 102.9 8.3 136 17-191 382-517 (630)
82 KOG1434 Meiotic recombination 99.2 9.7E-12 2.1E-16 100.7 3.6 176 18-203 114-314 (335)
83 PRK06893 DNA replication initi 99.2 2.6E-10 5.6E-15 93.5 11.1 37 18-55 38-74 (229)
84 cd01125 repA Hexameric Replica 99.2 5.6E-10 1.2E-14 92.1 12.7 155 19-189 1-191 (239)
85 COG1121 ZnuC ABC-type Mn/Zn tr 99.2 5.6E-10 1.2E-14 91.8 11.9 145 16-188 27-214 (254)
86 cd00984 DnaB_C DnaB helicase C 99.2 7.3E-10 1.6E-14 91.3 12.7 43 16-58 10-52 (242)
87 COG1136 SalX ABC-type antimicr 99.1 3.4E-10 7.4E-15 91.6 10.3 142 16-188 28-217 (226)
88 COG2874 FlaH Predicted ATPases 99.1 9.4E-10 2E-14 87.4 12.5 150 17-188 26-190 (235)
89 COG0467 RAD55 RecA-superfamily 99.1 2.7E-10 5.8E-15 95.2 9.9 42 16-58 20-61 (260)
90 cd03216 ABC_Carb_Monos_I This 99.1 1.2E-09 2.5E-14 85.0 12.8 134 16-188 23-157 (163)
91 cd03230 ABC_DR_subfamily_A Thi 99.1 8.4E-10 1.8E-14 86.6 12.1 139 17-188 24-170 (173)
92 cd03222 ABC_RNaseL_inhibitor T 99.1 8.4E-10 1.8E-14 86.9 11.8 126 15-188 21-147 (177)
93 PF13481 AAA_25: AAA domain; P 99.1 1.4E-10 3E-15 92.2 7.3 136 17-166 30-190 (193)
94 smart00382 AAA ATPases associa 99.1 2E-09 4.3E-14 79.8 12.5 92 18-120 1-93 (148)
95 TIGR02881 spore_V_K stage V sp 99.1 1.7E-09 3.8E-14 90.3 13.0 76 18-119 41-119 (261)
96 cd03229 ABC_Class3 This class 99.1 1.5E-09 3.3E-14 85.5 11.5 140 17-187 24-175 (178)
97 CHL00181 cbbX CbbX; Provisiona 99.1 1.3E-09 2.9E-14 92.2 11.8 77 17-119 57-136 (287)
98 cd03246 ABCC_Protease_Secretio 99.1 1.8E-09 3.8E-14 84.7 11.7 137 17-188 26-170 (173)
99 TIGR02880 cbbX_cfxQ probable R 99.1 8.1E-10 1.7E-14 93.4 10.4 76 18-119 57-135 (284)
100 COG2884 FtsE Predicted ATPase 99.1 2.5E-09 5.4E-14 83.6 12.0 144 16-188 25-212 (223)
101 KOG1564 DNA repair protein RHP 99.1 6.6E-10 1.4E-14 91.4 9.1 144 17-165 100-262 (351)
102 cd03223 ABCD_peroxisomal_ALDP 99.1 3.2E-09 7E-14 82.7 11.7 130 17-190 25-164 (166)
103 cd03214 ABC_Iron-Siderophores_ 99.1 1.7E-09 3.8E-14 85.3 10.3 140 17-188 23-173 (180)
104 PRK08084 DNA replication initi 99.0 2.3E-09 5.1E-14 88.2 11.2 37 18-55 44-80 (235)
105 cd03215 ABC_Carb_Monos_II This 99.0 1.6E-09 3.5E-14 85.7 9.4 142 16-187 23-178 (182)
106 COG4619 ABC-type uncharacteriz 99.0 1.5E-09 3.3E-14 83.3 8.6 36 17-53 27-62 (223)
107 COG1122 CbiO ABC-type cobalt t 99.0 1.5E-09 3.3E-14 89.0 9.1 57 106-188 157-214 (235)
108 PRK08727 hypothetical protein; 99.0 6.2E-09 1.3E-13 85.6 12.6 37 18-55 40-76 (233)
109 PRK04296 thymidine kinase; Pro 99.0 1.4E-08 3E-13 81.0 14.2 136 19-188 2-141 (190)
110 PRK08181 transposase; Validate 99.0 2.5E-09 5.5E-14 89.5 10.2 38 17-55 104-141 (269)
111 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.0 7.1E-09 1.5E-13 78.9 11.5 118 17-187 24-141 (144)
112 PF05496 RuvB_N: Holliday junc 99.0 1.6E-09 3.4E-14 87.3 8.1 67 18-119 49-115 (233)
113 TIGR00960 3a0501s02 Type II (G 99.0 2.7E-09 5.8E-14 86.6 9.6 28 17-44 27-54 (216)
114 cd03247 ABCC_cytochrome_bd The 99.0 5.7E-09 1.2E-13 82.2 10.9 139 17-188 26-171 (178)
115 cd03226 ABC_cobalt_CbiO_domain 99.0 3.9E-09 8.4E-14 85.0 10.1 29 16-44 23-51 (205)
116 cd03235 ABC_Metallic_Cations A 99.0 4.2E-09 9.1E-14 85.2 10.1 28 17-44 23-50 (213)
117 COG1124 DppF ABC-type dipeptid 99.0 6.2E-09 1.3E-13 84.3 10.9 73 88-188 144-217 (252)
118 cd00267 ABC_ATPase ABC (ATP-bi 99.0 1.1E-08 2.4E-13 78.8 12.0 132 17-188 23-155 (157)
119 PF07088 GvpD: GvpD gas vesicl 99.0 6.5E-09 1.4E-13 89.4 11.1 159 2-187 1-173 (484)
120 cd03266 ABC_NatA_sodium_export 99.0 4.3E-09 9.3E-14 85.5 9.7 28 17-44 29-56 (218)
121 COG1116 TauB ABC-type nitrate/ 99.0 9.8E-09 2.1E-13 83.6 11.6 29 16-44 26-54 (248)
122 cd00544 CobU Adenosylcobinamid 99.0 5.5E-09 1.2E-13 81.6 9.9 124 21-164 1-125 (169)
123 cd03237 ABC_RNaseL_inhibitor_d 99.0 6.6E-09 1.4E-13 86.1 10.8 145 16-188 22-191 (246)
124 cd03228 ABCC_MRP_Like The MRP 99.0 8.5E-09 1.9E-13 80.7 10.9 135 17-187 26-168 (171)
125 TIGR03420 DnaA_homol_Hda DnaA 99.0 1.4E-08 3.1E-13 82.6 12.6 38 17-55 36-73 (226)
126 cd03213 ABCG_EPDR ABCG transpo 99.0 8.1E-09 1.8E-13 82.5 10.8 143 17-188 33-187 (194)
127 PRK05642 DNA replication initi 99.0 7.8E-09 1.7E-13 85.1 10.9 36 20-56 46-81 (234)
128 cd03292 ABC_FtsE_transporter F 99.0 5.1E-09 1.1E-13 84.7 9.7 28 17-44 25-52 (214)
129 PRK06526 transposase; Provisio 98.9 4.7E-09 1E-13 87.3 9.5 38 17-55 96-133 (254)
130 TIGR02673 FtsE cell division A 98.9 4.9E-09 1.1E-13 84.9 9.3 28 17-44 26-53 (214)
131 cd00009 AAA The AAA+ (ATPases 98.9 1.3E-08 2.9E-13 76.0 11.0 38 18-56 18-55 (151)
132 COG4555 NatA ABC-type Na+ tran 98.9 8.1E-09 1.8E-13 81.5 9.8 142 16-188 25-208 (245)
133 cd03259 ABC_Carb_Solutes_like 98.9 9.2E-09 2E-13 83.3 10.6 28 17-44 24-51 (213)
134 PRK12377 putative replication 98.9 7.1E-09 1.5E-13 85.8 9.9 37 19-56 101-137 (248)
135 cd03262 ABC_HisP_GlnQ_permease 98.9 1.1E-08 2.4E-13 82.7 10.9 28 17-44 24-51 (213)
136 cd03269 ABC_putative_ATPase Th 98.9 6.5E-09 1.4E-13 83.9 9.5 28 17-44 24-51 (210)
137 PRK08903 DnaA regulatory inact 98.9 2.2E-08 4.7E-13 81.9 12.5 38 17-55 40-77 (227)
138 TIGR01277 thiQ thiamine ABC tr 98.9 1.2E-08 2.5E-13 82.7 10.8 29 16-44 21-49 (213)
139 cd03301 ABC_MalK_N The N-termi 98.9 1.2E-08 2.7E-13 82.4 10.9 28 17-44 24-51 (213)
140 PRK09544 znuC high-affinity zi 98.9 1E-08 2.2E-13 85.2 10.6 143 17-187 28-195 (251)
141 cd03293 ABC_NrtD_SsuB_transpor 98.9 9.7E-09 2.1E-13 83.6 10.3 28 17-44 28-55 (220)
142 cd03268 ABC_BcrA_bacitracin_re 98.9 8.7E-09 1.9E-13 83.1 9.9 28 17-44 24-51 (208)
143 cd03232 ABC_PDR_domain2 The pl 98.9 1.1E-08 2.4E-13 81.6 10.1 144 17-188 31-184 (192)
144 cd03256 ABC_PhnC_transporter A 98.9 1E-08 2.2E-13 84.5 10.2 29 16-44 24-52 (241)
145 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.9 9.5E-09 2.1E-13 83.4 9.8 28 17-44 28-55 (218)
146 cd03258 ABC_MetN_methionine_tr 98.9 8.8E-09 1.9E-13 84.5 9.7 28 17-44 29-56 (233)
147 cd03225 ABC_cobalt_CbiO_domain 98.9 9.8E-09 2.1E-13 82.9 9.7 28 17-44 25-52 (211)
148 PRK10895 lipopolysaccharide AB 98.9 1.4E-08 3E-13 83.8 10.8 28 17-44 27-54 (241)
149 cd03296 ABC_CysA_sulfate_impor 98.9 1.5E-08 3.3E-13 83.5 11.0 28 17-44 26-53 (239)
150 cd03265 ABC_DrrA DrrA is the A 98.9 9.6E-09 2.1E-13 83.6 9.7 27 17-43 24-50 (220)
151 cd03218 ABC_YhbG The ABC trans 98.9 1.1E-08 2.4E-13 83.9 10.0 28 17-44 24-51 (232)
152 PRK13543 cytochrome c biogenes 98.9 1.5E-08 3.2E-13 82.2 10.5 28 17-44 35-62 (214)
153 cd03261 ABC_Org_Solvent_Resist 98.9 8.9E-09 1.9E-13 84.6 9.3 29 16-44 23-51 (235)
154 TIGR03740 galliderm_ABC gallid 98.9 1.3E-08 2.7E-13 83.1 10.1 28 17-44 24-51 (223)
155 PRK10771 thiQ thiamine transpo 98.9 2.7E-08 5.8E-13 81.6 12.1 29 16-44 22-50 (232)
156 PRK13537 nodulation ABC transp 98.9 7.8E-09 1.7E-13 88.4 9.2 28 17-44 31-58 (306)
157 cd03219 ABC_Mj1267_LivG_branch 98.9 1.1E-08 2.4E-13 84.0 9.8 28 17-44 24-51 (236)
158 PF00308 Bac_DnaA: Bacterial d 98.9 1.4E-08 3.1E-13 82.6 10.3 108 19-167 34-142 (219)
159 TIGR02315 ABC_phnC phosphonate 98.9 1.4E-08 3.1E-13 83.7 10.4 28 17-44 26-53 (243)
160 PF13479 AAA_24: AAA domain 98.9 2.9E-08 6.4E-13 80.5 12.0 147 19-187 3-173 (213)
161 PRK11248 tauB taurine transpor 98.9 2E-08 4.3E-13 83.7 11.2 29 16-44 24-52 (255)
162 cd03298 ABC_ThiQ_thiamine_tran 98.9 2.4E-08 5.1E-13 80.7 11.3 29 16-44 21-49 (211)
163 cd03238 ABC_UvrA The excision 98.9 2E-08 4.4E-13 78.9 10.5 25 16-40 18-42 (176)
164 PRK09183 transposase/IS protei 98.9 7.7E-08 1.7E-12 80.3 14.5 39 16-55 99-137 (259)
165 PRK10908 cell division protein 98.9 1.6E-08 3.4E-13 82.4 10.2 28 17-44 26-53 (222)
166 TIGR01188 drrA daunorubicin re 98.9 9.1E-09 2E-13 87.8 9.1 29 16-44 16-44 (302)
167 COG1127 Ttg2A ABC-type transpo 98.9 1.2E-08 2.6E-13 82.6 9.1 40 16-57 31-70 (263)
168 TIGR01288 nodI ATP-binding ABC 98.9 1.3E-08 2.8E-13 87.0 9.9 29 16-44 27-55 (303)
169 PRK11247 ssuB aliphatic sulfon 98.9 1.8E-08 3.9E-13 84.1 10.5 28 17-44 36-63 (257)
170 cd03233 ABC_PDR_domain1 The pl 98.9 3.2E-08 7E-13 79.5 11.6 144 17-188 31-195 (202)
171 cd03217 ABC_FeS_Assembly ABC-t 98.9 3.1E-08 6.6E-13 79.5 11.4 143 17-188 24-180 (200)
172 KOG0741 AAA+-type ATPase [Post 98.9 5.5E-09 1.2E-13 92.7 7.4 139 17-191 536-674 (744)
173 PRK11124 artP arginine transpo 98.9 1.5E-08 3.3E-13 83.6 9.7 28 17-44 26-53 (242)
174 TIGR02314 ABC_MetN D-methionin 98.9 1.5E-08 3.2E-13 87.9 9.9 28 17-44 29-56 (343)
175 PRK13651 cobalt transporter AT 98.9 2.2E-08 4.8E-13 85.6 10.8 57 106-188 184-240 (305)
176 PRK11300 livG leucine/isoleuci 98.9 1.7E-08 3.6E-13 84.0 9.9 28 17-44 29-56 (255)
177 COG1134 TagH ABC-type polysacc 98.9 2.4E-08 5.3E-13 81.0 10.3 139 17-188 51-222 (249)
178 PRK13647 cbiO cobalt transport 98.9 1.9E-08 4.1E-13 84.7 10.2 57 106-188 157-213 (274)
179 PRK11264 putative amino-acid A 98.9 1.9E-08 4.2E-13 83.3 10.1 27 17-43 27-53 (250)
180 COG2256 MGS1 ATPase related to 98.9 1.3E-08 2.8E-13 87.8 9.1 70 18-119 47-118 (436)
181 PRK05800 cobU adenosylcobinami 98.9 1E-08 2.2E-13 80.2 7.9 125 20-166 2-127 (170)
182 cd03294 ABC_Pro_Gly_Bertaine T 98.9 2E-08 4.2E-13 84.4 10.1 28 17-44 48-75 (269)
183 PRK10619 histidine/lysine/argi 98.9 2.1E-08 4.6E-13 83.5 10.2 57 106-188 171-227 (257)
184 PRK11153 metN DL-methionine tr 98.9 1.6E-08 3.5E-13 87.8 9.8 28 17-44 29-56 (343)
185 cd03300 ABC_PotA_N PotA is an 98.9 2E-08 4.2E-13 82.5 9.8 28 17-44 24-51 (232)
186 PRK09493 glnQ glutamine ABC tr 98.8 2.7E-08 5.9E-13 82.0 10.5 28 17-44 25-52 (240)
187 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.8 2.1E-08 4.6E-13 81.9 9.7 28 17-44 46-73 (224)
188 PRK06835 DNA replication prote 98.8 7.6E-08 1.6E-12 82.9 13.4 38 18-56 182-219 (329)
189 COG1135 AbcC ABC-type metal io 98.8 3.2E-08 7E-13 82.8 10.7 143 16-188 29-217 (339)
190 PRK11650 ugpC glycerol-3-phosp 98.8 3E-08 6.5E-13 86.5 11.0 29 16-44 27-55 (356)
191 PF01695 IstB_IS21: IstB-like 98.8 1.5E-08 3.3E-13 79.9 8.3 40 17-57 45-84 (178)
192 TIGR01184 ntrCD nitrate transp 98.8 2.6E-08 5.6E-13 81.7 10.1 29 16-44 8-36 (230)
193 cd03283 ABC_MutS-like MutS-lik 98.8 3.7E-08 8E-13 79.1 10.7 27 17-43 23-49 (199)
194 TIGR03771 anch_rpt_ABC anchore 98.8 2.6E-08 5.6E-13 81.3 10.0 28 17-44 4-31 (223)
195 PRK07952 DNA replication prote 98.8 2.8E-08 6.2E-13 82.0 10.1 35 20-55 100-134 (244)
196 cd03224 ABC_TM1139_LivF_branch 98.8 2.1E-08 4.5E-13 81.6 9.2 29 16-44 23-51 (222)
197 COG1131 CcmA ABC-type multidru 98.8 1.9E-08 4.2E-13 85.4 9.3 29 16-44 28-56 (293)
198 PRK13536 nodulation factor exp 98.8 1.9E-08 4.2E-13 87.1 9.4 28 17-44 65-92 (340)
199 TIGR02211 LolD_lipo_ex lipopro 98.8 2.1E-08 4.6E-13 81.5 9.2 28 17-44 29-56 (221)
200 PRK13638 cbiO cobalt transport 98.8 2.1E-08 4.5E-13 84.3 9.3 28 17-44 25-52 (271)
201 PRK11144 modC molybdate transp 98.8 3.4E-08 7.3E-13 86.1 10.9 28 17-44 22-49 (352)
202 PRK11000 maltose/maltodextrin 98.8 2.7E-08 6E-13 87.1 10.4 28 17-44 27-54 (369)
203 PRK08116 hypothetical protein; 98.8 2.9E-08 6.2E-13 83.3 10.1 37 18-55 113-149 (268)
204 PRK09536 btuD corrinoid ABC tr 98.8 4.9E-08 1.1E-12 86.3 11.9 28 17-44 27-54 (402)
205 PRK10253 iron-enterobactin tra 98.8 3.4E-08 7.3E-13 82.7 10.4 28 17-44 31-58 (265)
206 PRK14250 phosphate ABC transpo 98.8 3E-08 6.6E-13 81.8 9.9 28 17-44 27-54 (241)
207 TIGR03873 F420-0_ABC_ATP propo 98.8 3.7E-08 8E-13 82.0 10.5 28 17-44 25-52 (256)
208 PRK10575 iron-hydroxamate tran 98.8 4.3E-08 9.3E-13 82.1 10.9 28 17-44 35-62 (265)
209 TIGR03258 PhnT 2-aminoethylpho 98.8 3.2E-08 7E-13 86.4 10.4 28 17-44 29-56 (362)
210 TIGR02324 CP_lyasePhnL phospho 98.8 3E-08 6.6E-13 80.8 9.7 28 17-44 32-59 (224)
211 PRK13643 cbiO cobalt transport 98.8 5E-08 1.1E-12 82.7 11.2 28 17-44 30-57 (288)
212 COG3839 MalK ABC-type sugar tr 98.8 2.9E-08 6.2E-13 85.1 9.6 29 16-44 26-54 (338)
213 KOG0735 AAA+-type ATPase [Post 98.8 4.4E-08 9.6E-13 89.7 11.2 143 17-188 429-572 (952)
214 TIGR01166 cbiO cobalt transpor 98.8 2.5E-08 5.4E-13 79.3 8.6 29 16-44 15-43 (190)
215 TIGR03005 ectoine_ehuA ectoine 98.8 3.5E-08 7.7E-13 81.9 9.9 28 17-44 24-51 (252)
216 COG3638 ABC-type phosphate/pho 98.8 3.4E-08 7.3E-13 79.8 9.3 73 88-188 150-223 (258)
217 PRK13548 hmuV hemin importer A 98.8 5.3E-08 1.1E-12 81.2 11.0 28 17-44 26-53 (258)
218 PRK11231 fecE iron-dicitrate t 98.8 4.2E-08 9.1E-13 81.7 10.4 28 17-44 26-53 (255)
219 PRK11432 fbpC ferric transport 98.8 4E-08 8.7E-13 85.5 10.6 28 17-44 30-57 (351)
220 TIGR03411 urea_trans_UrtD urea 98.8 3.5E-08 7.7E-13 81.4 9.8 28 17-44 26-53 (242)
221 cd03264 ABC_drug_resistance_li 98.8 3E-08 6.4E-13 80.1 9.2 27 17-44 24-50 (211)
222 cd03231 ABC_CcmA_heme_exporter 98.8 3.5E-08 7.7E-13 79.2 9.4 28 17-44 24-51 (201)
223 PRK11614 livF leucine/isoleuci 98.8 3.6E-08 7.9E-13 81.1 9.7 28 17-44 29-56 (237)
224 PRK15056 manganese/iron transp 98.8 3.9E-08 8.5E-13 82.7 10.0 28 17-44 31-58 (272)
225 TIGR03265 PhnT2 putative 2-ami 98.8 3.9E-08 8.4E-13 85.7 10.2 28 17-44 28-55 (353)
226 PRK09452 potA putrescine/sperm 98.8 4E-08 8.6E-13 86.2 10.3 28 17-44 38-65 (375)
227 TIGR01618 phage_P_loop phage n 98.8 6.5E-08 1.4E-12 78.5 10.8 130 18-164 11-142 (220)
228 cd03297 ABC_ModC_molybdenum_tr 98.8 4.5E-08 9.7E-13 79.3 9.9 27 17-44 22-48 (214)
229 PRK10070 glycine betaine trans 98.8 4.3E-08 9.3E-13 86.6 10.5 28 17-44 52-79 (400)
230 cd03263 ABC_subfamily_A The AB 98.8 3.5E-08 7.6E-13 80.2 9.3 28 17-44 26-53 (220)
231 PRK13546 teichoic acids export 98.8 5.8E-08 1.3E-12 81.3 10.8 28 17-44 48-75 (264)
232 TIGR03608 L_ocin_972_ABC putat 98.8 2.9E-08 6.4E-13 79.8 8.7 28 17-44 22-49 (206)
233 PRK15439 autoinducer 2 ABC tra 98.8 3.5E-08 7.6E-13 90.1 10.2 28 17-44 35-62 (510)
234 PRK13646 cbiO cobalt transport 98.8 3.5E-08 7.5E-13 83.6 9.5 28 17-44 31-58 (286)
235 TIGR00968 3a0106s01 sulfate AB 98.8 5.2E-08 1.1E-12 80.2 10.3 28 17-44 24-51 (237)
236 PRK13652 cbiO cobalt transport 98.8 4.1E-08 9E-13 82.7 9.9 28 17-44 28-55 (277)
237 TIGR02142 modC_ABC molybdenum 98.8 4.7E-08 1E-12 85.3 10.5 29 16-44 20-48 (354)
238 PRK11831 putative ABC transpor 98.8 4.1E-08 8.8E-13 82.4 9.8 28 17-44 31-58 (269)
239 PRK13634 cbiO cobalt transport 98.8 4E-08 8.7E-13 83.4 9.8 28 17-44 31-58 (290)
240 COG3854 SpoIIIAA ncharacterize 98.8 5.2E-08 1.1E-12 78.5 9.7 93 18-119 135-232 (308)
241 PRK13631 cbiO cobalt transport 98.8 4.5E-08 9.8E-13 84.2 10.2 57 106-188 195-251 (320)
242 PF13173 AAA_14: AAA domain 98.8 5.3E-08 1.1E-12 72.6 9.2 35 19-55 2-36 (128)
243 TIGR01186 proV glycine betaine 98.8 3.8E-08 8.2E-13 85.9 9.7 29 16-44 16-44 (363)
244 PRK13637 cbiO cobalt transport 98.8 5.3E-08 1.2E-12 82.5 10.4 28 17-44 31-58 (287)
245 PRK12422 chromosomal replicati 98.8 4.3E-08 9.2E-13 87.8 10.2 37 20-57 142-178 (445)
246 PRK10851 sulfate/thiosulfate t 98.8 4.8E-08 1E-12 85.1 10.3 28 17-44 26-53 (353)
247 cd03257 ABC_NikE_OppD_transpor 98.8 4.4E-08 9.5E-13 80.0 9.4 28 17-44 29-56 (228)
248 PRK06921 hypothetical protein; 98.8 6.8E-08 1.5E-12 80.9 10.7 38 18-55 116-153 (266)
249 PRK13649 cbiO cobalt transport 98.8 3.8E-08 8.1E-13 83.1 9.3 28 17-44 31-58 (280)
250 TIGR03522 GldA_ABC_ATP gliding 98.8 3.5E-08 7.5E-13 84.2 9.1 28 17-44 26-53 (301)
251 COG4618 ArpD ABC-type protease 98.8 4.3E-08 9.4E-13 86.8 9.8 42 106-165 491-532 (580)
252 PRK09984 phosphonate/organopho 98.8 5.1E-08 1.1E-12 81.5 9.9 28 17-44 28-55 (262)
253 PRK13636 cbiO cobalt transport 98.8 5.4E-08 1.2E-12 82.3 10.1 28 17-44 30-57 (283)
254 TIGR01978 sufC FeS assembly AT 98.8 8.2E-08 1.8E-12 79.2 10.9 27 16-42 23-49 (243)
255 PRK13639 cbiO cobalt transport 98.8 4.7E-08 1E-12 82.3 9.6 28 17-44 26-53 (275)
256 TIGR03600 phage_DnaB phage rep 98.8 1.4E-07 3E-12 84.2 13.0 41 17-57 192-232 (421)
257 TIGR00362 DnaA chromosomal rep 98.8 5.1E-08 1.1E-12 86.5 10.2 39 19-57 136-175 (405)
258 PRK09700 D-allose transporter 98.8 4.4E-08 9.6E-13 89.4 9.9 28 17-44 29-56 (510)
259 PRK11629 lolD lipoprotein tran 98.8 3.9E-08 8.5E-13 80.7 8.7 28 17-44 33-60 (233)
260 TIGR01189 ccmA heme ABC export 98.8 6.1E-08 1.3E-12 77.6 9.6 28 17-44 24-51 (198)
261 cd03295 ABC_OpuCA_Osmoprotecti 98.8 5.4E-08 1.2E-12 80.3 9.5 28 17-44 25-52 (242)
262 cd03299 ABC_ModC_like Archeal 98.8 7.4E-08 1.6E-12 79.2 10.3 28 17-44 23-50 (235)
263 PRK10762 D-ribose transporter 98.8 5.3E-08 1.1E-12 88.7 10.3 28 17-44 28-55 (501)
264 PRK13650 cbiO cobalt transport 98.8 4.9E-08 1.1E-12 82.4 9.4 28 17-44 31-58 (279)
265 PRK14086 dnaA chromosomal repl 98.8 4.7E-08 1E-12 89.7 9.8 38 20-57 315-353 (617)
266 PRK10418 nikD nickel transport 98.8 8.9E-08 1.9E-12 79.7 10.7 28 17-44 27-54 (254)
267 PRK10584 putative ABC transpor 98.7 5.4E-08 1.2E-12 79.6 9.2 28 17-44 34-61 (228)
268 TIGR03410 urea_trans_UrtE urea 98.7 6.4E-08 1.4E-12 79.2 9.6 28 17-44 24-51 (230)
269 COG1484 DnaC DNA replication p 98.7 4.4E-08 9.6E-13 81.5 8.7 38 17-55 103-140 (254)
270 PRK00149 dnaA chromosomal repl 98.7 5E-08 1.1E-12 87.7 9.7 39 19-57 148-187 (450)
271 TIGR03864 PQQ_ABC_ATP ABC tran 98.7 7.2E-08 1.6E-12 79.3 9.9 28 17-44 25-52 (236)
272 TIGR00665 DnaB replicative DNA 98.7 7.5E-08 1.6E-12 86.2 10.8 41 17-57 193-233 (434)
273 PRK14088 dnaA chromosomal repl 98.7 1.3E-07 2.7E-12 84.8 12.1 38 20-57 131-169 (440)
274 PRK13538 cytochrome c biogenes 98.7 5E-08 1.1E-12 78.5 8.7 28 17-44 25-52 (204)
275 PRK13645 cbiO cobalt transport 98.7 5.4E-08 1.2E-12 82.5 9.2 28 17-44 35-62 (289)
276 COG3598 RepA RecA-family ATPas 98.7 6.2E-08 1.3E-12 81.4 9.1 134 17-165 87-242 (402)
277 cd03234 ABCG_White The White s 98.7 1.2E-07 2.7E-12 77.4 10.9 28 17-44 31-58 (226)
278 cd03369 ABCC_NFT1 Domain 2 of 98.7 2.1E-07 4.5E-12 75.0 12.1 28 17-44 32-59 (207)
279 cd03260 ABC_PstB_phosphate_tra 98.7 1.7E-07 3.8E-12 76.5 11.7 27 17-43 24-50 (227)
280 PRK13641 cbiO cobalt transport 98.7 8.9E-08 1.9E-12 81.1 10.3 28 17-44 31-58 (287)
281 COG3842 PotA ABC-type spermidi 98.7 3.5E-08 7.6E-13 85.0 7.8 29 16-44 28-56 (352)
282 PRK15112 antimicrobial peptide 98.7 7.5E-08 1.6E-12 80.7 9.7 29 16-44 36-64 (267)
283 PRK13409 putative ATPase RIL; 98.7 9.2E-08 2E-12 88.6 11.2 144 17-188 363-529 (590)
284 cd03250 ABCC_MRP_domain1 Domai 98.7 1.6E-07 3.5E-12 75.5 11.2 41 17-57 29-74 (204)
285 PRK05748 replicative DNA helic 98.7 2.8E-07 6.1E-12 82.9 13.9 176 17-202 201-423 (448)
286 TIGR02770 nickel_nikD nickel i 98.7 9.7E-08 2.1E-12 78.3 10.1 29 16-44 9-37 (230)
287 cd03245 ABCC_bacteriocin_expor 98.7 1.3E-07 2.9E-12 76.8 10.8 28 17-44 28-55 (220)
288 COG1125 OpuBA ABC-type proline 98.7 8.7E-08 1.9E-12 78.3 9.4 40 16-57 24-63 (309)
289 PRK13540 cytochrome c biogenes 98.7 8.1E-08 1.7E-12 77.0 9.1 28 17-44 25-52 (200)
290 PRK10938 putative molybdenum t 98.7 1.1E-07 2.5E-12 86.3 11.2 28 17-44 27-54 (490)
291 cd03253 ABCC_ATM1_transporter 98.7 1.8E-07 4E-12 76.8 11.4 28 17-44 25-52 (236)
292 PRK11607 potG putrescine trans 98.7 1.1E-07 2.4E-12 83.5 10.6 28 17-44 43-70 (377)
293 cd03280 ABC_MutS2 MutS2 homolo 98.7 1.2E-07 2.7E-12 76.0 10.1 25 17-41 25-50 (200)
294 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.7 1.8E-07 3.8E-12 77.0 11.3 28 17-44 27-54 (238)
295 PRK13539 cytochrome c biogenes 98.7 8.3E-08 1.8E-12 77.4 9.1 28 17-44 26-53 (207)
296 PRK14722 flhF flagellar biosyn 98.7 1.3E-07 2.9E-12 82.4 10.9 42 16-57 134-176 (374)
297 PRK10247 putative ABC transpor 98.7 2.2E-07 4.7E-12 76.0 11.6 28 17-44 31-58 (225)
298 TIGR02769 nickel_nikE nickel i 98.7 1E-07 2.2E-12 79.9 9.9 28 17-44 35-62 (265)
299 PRK13541 cytochrome c biogenes 98.7 1E-07 2.2E-12 76.1 9.5 28 17-44 24-51 (195)
300 PRK13635 cbiO cobalt transport 98.7 7E-08 1.5E-12 81.4 9.0 28 17-44 31-58 (279)
301 TIGR02982 heterocyst_DevA ABC 98.7 1.3E-07 2.7E-12 77.0 10.1 27 17-43 29-55 (220)
302 cd03267 ABC_NatA_like Similar 98.7 1.2E-07 2.5E-12 78.1 10.0 28 17-44 45-72 (236)
303 COG1117 PstB ABC-type phosphat 98.7 4.3E-08 9.4E-13 78.1 7.0 26 17-42 31-56 (253)
304 PF03796 DnaB_C: DnaB-like hel 98.7 3.9E-07 8.4E-12 76.0 13.2 175 17-202 17-238 (259)
305 PRK09580 sufC cysteine desulfu 98.7 1.5E-07 3.1E-12 78.0 10.6 26 17-42 25-50 (248)
306 PRK11308 dppF dipeptide transp 98.7 1.3E-07 2.8E-12 81.6 10.6 28 17-44 39-66 (327)
307 PRK13632 cbiO cobalt transport 98.7 1.4E-07 3.1E-12 79.2 10.6 28 17-44 33-60 (271)
308 TIGR02868 CydC thiol reductant 98.7 8.6E-08 1.9E-12 87.9 10.0 28 17-44 359-386 (529)
309 cd03236 ABC_RNaseL_inhibitor_d 98.7 8.8E-08 1.9E-12 79.8 9.2 35 16-51 23-57 (255)
310 PRK13648 cbiO cobalt transport 98.7 1.4E-07 3E-12 79.2 10.4 28 17-44 33-60 (269)
311 PRK13644 cbiO cobalt transport 98.7 7.9E-08 1.7E-12 80.9 8.9 28 17-44 26-53 (274)
312 COG4178 ABC-type uncharacteriz 98.7 1.5E-07 3.3E-12 85.9 11.2 146 17-192 417-592 (604)
313 PRK09473 oppD oligopeptide tra 98.7 1.4E-07 3E-12 81.5 10.5 28 17-44 40-67 (330)
314 PRK03695 vitamin B12-transport 98.7 1.7E-07 3.8E-12 77.7 10.5 28 16-43 19-46 (248)
315 PRK15079 oligopeptide ABC tran 98.7 1.1E-07 2.3E-12 82.2 9.6 28 17-44 45-72 (331)
316 PRK11701 phnK phosphonate C-P 98.7 1.4E-07 3.1E-12 78.6 10.1 28 17-44 30-57 (258)
317 COG4608 AppF ABC-type oligopep 98.7 1.7E-07 3.8E-12 77.3 10.1 127 16-164 36-169 (268)
318 PRK13549 xylose transporter AT 98.7 9.9E-08 2.1E-12 87.1 9.6 28 17-44 29-56 (506)
319 TIGR03415 ABC_choXWV_ATP choli 98.7 1.3E-07 2.9E-12 83.0 10.0 28 17-44 48-75 (382)
320 PRK14087 dnaA chromosomal repl 98.7 1.5E-07 3.3E-12 84.4 10.6 39 19-57 141-180 (450)
321 cd03251 ABCC_MsbA MsbA is an e 98.7 3.1E-07 6.7E-12 75.3 11.6 29 16-44 25-53 (234)
322 PRK13342 recombination factor 98.7 1.5E-07 3.2E-12 83.8 10.3 34 18-55 35-68 (413)
323 PRK11174 cysteine/glutathione 98.7 1.3E-07 2.8E-12 87.8 10.4 27 17-43 374-400 (588)
324 cd03252 ABCC_Hemolysin The ABC 98.7 1.8E-07 3.9E-12 76.9 10.1 28 17-44 26-53 (237)
325 PRK13545 tagH teichoic acids e 98.7 1.7E-07 3.7E-12 84.8 10.7 28 17-44 48-75 (549)
326 cd03254 ABCC_Glucan_exporter_l 98.7 1.1E-07 2.4E-12 77.7 8.8 28 17-44 27-54 (229)
327 COG1119 ModF ABC-type molybden 98.7 4E-07 8.8E-12 74.0 11.6 28 17-44 55-82 (257)
328 PRK10982 galactose/methyl gala 98.7 2E-07 4.3E-12 84.8 11.0 28 17-44 22-49 (491)
329 PRK09700 D-allose transporter 98.7 1.8E-07 3.8E-12 85.5 10.7 57 106-188 428-484 (510)
330 PRK10419 nikE nickel transport 98.7 1.6E-07 3.5E-12 78.7 9.6 28 17-44 36-63 (268)
331 PRK11288 araG L-arabinose tran 98.7 1.8E-07 4E-12 85.2 10.7 28 17-44 28-55 (501)
332 PRK13640 cbiO cobalt transport 98.7 1.9E-07 4E-12 79.0 9.8 28 17-44 31-58 (282)
333 COG1123 ATPase components of v 98.7 2.2E-07 4.8E-12 83.8 10.7 38 17-55 315-352 (539)
334 PRK08939 primosomal protein Dn 98.6 1.6E-07 3.4E-12 80.2 9.2 37 18-55 155-191 (306)
335 COG0410 LivF ABC-type branched 98.6 2.4E-07 5.2E-12 74.7 9.7 37 16-53 26-62 (237)
336 PRK15093 antimicrobial peptide 98.6 2.1E-07 4.6E-12 80.4 10.2 28 16-43 30-57 (330)
337 PRK11176 lipid transporter ATP 98.6 1.7E-07 3.7E-12 86.9 10.2 28 17-44 367-394 (582)
338 PRK13547 hmuV hemin importer A 98.6 2.8E-07 6.1E-12 77.5 10.6 29 16-44 24-52 (272)
339 TIGR02323 CP_lyasePhnK phospho 98.6 2.1E-07 4.7E-12 77.2 9.7 28 17-44 27-54 (253)
340 TIGR03269 met_CoM_red_A2 methy 98.6 2.9E-07 6.3E-12 84.3 11.2 28 16-43 23-50 (520)
341 PRK14247 phosphate ABC transpo 98.6 3.1E-07 6.6E-12 76.2 10.4 27 17-43 27-53 (250)
342 cd03243 ABC_MutS_homologs The 98.6 1.8E-07 3.9E-12 75.2 8.7 26 17-42 27-52 (202)
343 COG1118 CysA ABC-type sulfate/ 98.6 3.1E-07 6.7E-12 76.9 10.2 29 16-44 25-53 (345)
344 TIGR02639 ClpA ATP-dependent C 98.6 2.2E-07 4.8E-12 88.3 10.6 82 18-120 202-289 (731)
345 COG4133 CcmA ABC-type transpor 98.6 2.7E-07 5.9E-12 72.2 9.2 36 17-53 26-61 (209)
346 cd03278 ABC_SMC_barmotin Barmo 98.6 9.1E-07 2E-11 70.9 12.6 27 16-43 20-46 (197)
347 cd03248 ABCC_TAP TAP, the Tran 98.6 5.4E-07 1.2E-11 73.5 11.5 28 17-44 38-65 (226)
348 COG4586 ABC-type uncharacteriz 98.6 1.1E-07 2.4E-12 78.3 7.3 29 16-44 47-75 (325)
349 TIGR02633 xylG D-xylose ABC tr 98.6 2.4E-07 5.1E-12 84.5 10.3 27 17-43 25-51 (500)
350 TIGR00972 3a0107s01c2 phosphat 98.6 3.9E-07 8.5E-12 75.4 10.7 28 17-44 25-52 (247)
351 COG2274 SunT ABC-type bacterio 98.6 1.5E-07 3.3E-12 88.3 9.0 28 17-44 497-524 (709)
352 KOG0743 AAA+-type ATPase [Post 98.6 1.5E-07 3.2E-12 82.4 8.3 133 19-188 235-369 (457)
353 PRK14269 phosphate ABC transpo 98.6 3.4E-07 7.3E-12 75.8 10.1 27 17-43 26-52 (246)
354 PRK15134 microcin C ABC transp 98.6 2.5E-07 5.5E-12 84.8 10.2 28 17-44 33-60 (529)
355 PRK11288 araG L-arabinose tran 98.6 4.9E-07 1.1E-11 82.4 12.0 57 106-188 415-471 (501)
356 PRK14273 phosphate ABC transpo 98.6 4.9E-07 1.1E-11 75.1 11.0 28 17-44 31-58 (254)
357 PRK13657 cyclic beta-1,2-gluca 98.6 4.4E-07 9.5E-12 84.3 11.8 28 17-44 359-386 (588)
358 PRK14249 phosphate ABC transpo 98.6 5.8E-07 1.3E-11 74.6 11.3 28 17-44 28-55 (251)
359 TIGR03797 NHPM_micro_ABC2 NHPM 98.6 2.8E-07 6.1E-12 87.1 10.5 28 17-44 477-504 (686)
360 KOG0989 Replication factor C, 98.6 1.4E-07 3.1E-12 78.8 7.3 37 17-53 55-91 (346)
361 PRK00080 ruvB Holliday junctio 98.6 4.9E-07 1.1E-11 78.0 11.0 34 17-54 49-82 (328)
362 PRK11889 flhF flagellar biosyn 98.6 1.9E-06 4E-11 75.4 14.4 95 18-119 240-334 (436)
363 PHA00729 NTP-binding motif con 98.6 2.5E-07 5.5E-12 75.1 8.5 24 20-43 18-41 (226)
364 PRK14242 phosphate transporter 98.6 5.3E-07 1.1E-11 74.9 10.6 26 17-42 30-55 (253)
365 PRK10261 glutathione transport 98.6 2.8E-07 6.1E-12 86.1 9.9 28 17-44 40-67 (623)
366 PRK14259 phosphate ABC transpo 98.6 7.1E-07 1.5E-11 74.9 11.4 26 17-42 37-62 (269)
367 COG1132 MdlB ABC-type multidru 98.6 3.7E-07 8E-12 84.4 10.5 28 17-44 353-380 (567)
368 PRK11022 dppD dipeptide transp 98.6 5E-07 1.1E-11 78.0 10.6 29 16-44 30-58 (326)
369 PRK10865 protein disaggregatio 98.6 3.1E-07 6.7E-12 88.5 10.1 84 17-120 197-286 (857)
370 COG2255 RuvB Holliday junction 98.6 2.8E-07 6.1E-12 76.4 8.4 70 16-120 49-118 (332)
371 PRK15064 ABC transporter ATP-b 98.6 4.8E-07 1.1E-11 83.0 11.0 28 17-44 25-52 (530)
372 PRK14235 phosphate transporter 98.6 7E-07 1.5E-11 74.9 11.0 28 17-44 43-70 (267)
373 cd03290 ABCC_SUR1_N The SUR do 98.6 7.3E-07 1.6E-11 72.4 10.8 28 17-44 25-52 (218)
374 COG4598 HisP ABC-type histidin 98.6 8.2E-07 1.8E-11 69.2 10.4 75 86-188 153-227 (256)
375 PRK14267 phosphate ABC transpo 98.6 5.1E-07 1.1E-11 75.0 10.1 27 17-43 28-54 (253)
376 PF13401 AAA_22: AAA domain; P 98.6 5E-08 1.1E-12 72.4 3.6 38 18-55 3-44 (131)
377 KOG1433 DNA repair protein RAD 98.6 3.2E-07 6.9E-12 78.2 8.8 139 17-164 109-253 (326)
378 PRK13642 cbiO cobalt transport 98.6 3.2E-07 7E-12 77.3 8.8 28 17-44 31-58 (277)
379 TIGR03796 NHPM_micro_ABC1 NHPM 98.6 3.3E-07 7.2E-12 86.9 9.8 28 17-44 503-530 (710)
380 TIGR00635 ruvB Holliday juncti 98.6 4.6E-07 1E-11 77.3 9.8 27 18-44 29-55 (305)
381 cd03244 ABCC_MRP_domain2 Domai 98.6 6.1E-07 1.3E-11 72.9 10.0 28 17-44 28-55 (221)
382 PRK12724 flagellar biosynthesi 98.6 9E-07 2E-11 78.0 11.6 40 18-57 222-261 (432)
383 CHL00131 ycf16 sulfate ABC tra 98.6 6.8E-07 1.5E-11 74.2 10.4 26 17-42 31-56 (252)
384 PRK14274 phosphate ABC transpo 98.6 1.1E-06 2.5E-11 73.2 11.8 27 17-43 36-62 (259)
385 PRK10261 glutathione transport 98.6 5E-07 1.1E-11 84.5 10.6 27 17-43 348-374 (623)
386 PRK10790 putative multidrug tr 98.6 4.1E-07 8.8E-12 84.6 10.0 28 17-44 365-392 (592)
387 KOG0055 Multidrug/pheromone ex 98.6 6.1E-07 1.3E-11 87.2 11.3 39 17-57 377-415 (1228)
388 PRK10744 pstB phosphate transp 98.5 7.5E-07 1.6E-11 74.4 10.6 27 17-43 37-63 (260)
389 TIGR01842 type_I_sec_PrtD type 98.5 3.8E-07 8.2E-12 84.0 9.4 28 17-44 342-369 (544)
390 PRK14236 phosphate transporter 98.5 9.6E-07 2.1E-11 74.2 11.0 27 17-43 49-75 (272)
391 PRK14256 phosphate ABC transpo 98.5 8.2E-07 1.8E-11 73.7 10.5 28 16-43 27-54 (252)
392 PRK10762 D-ribose transporter 98.5 4.8E-07 1E-11 82.5 9.8 57 106-188 414-470 (501)
393 PRK13633 cobalt transporter AT 98.5 4.3E-07 9.3E-12 76.7 8.9 28 17-44 34-61 (280)
394 COG4559 ABC-type hemin transpo 98.5 7.8E-07 1.7E-11 71.0 9.6 38 16-54 24-61 (259)
395 COG1129 MglA ABC-type sugar tr 98.5 3.9E-07 8.4E-12 81.6 8.9 42 105-164 163-204 (500)
396 PRK15439 autoinducer 2 ABC tra 98.5 5.5E-07 1.2E-11 82.3 10.1 57 106-188 422-478 (510)
397 cd03288 ABCC_SUR2 The SUR doma 98.5 1.4E-06 3.1E-11 72.5 11.9 28 17-44 45-72 (257)
398 TIGR02633 xylG D-xylose ABC tr 98.5 1E-06 2.3E-11 80.2 11.9 57 106-188 422-478 (500)
399 PRK11160 cysteine/glutathione 98.5 5.7E-07 1.2E-11 83.3 10.3 28 17-44 364-391 (574)
400 PRK14265 phosphate ABC transpo 98.5 1.1E-06 2.4E-11 73.9 11.3 26 17-42 44-69 (274)
401 TIGR03375 type_I_sec_LssB type 98.5 4.5E-07 9.7E-12 85.8 9.8 28 17-44 489-516 (694)
402 KOG0058 Peptide exporter, ABC 98.5 4.9E-07 1.1E-11 83.3 9.6 28 17-44 492-519 (716)
403 PRK13549 xylose transporter AT 98.5 6.8E-07 1.5E-11 81.6 10.6 57 106-188 424-480 (506)
404 TIGR01192 chvA glucan exporter 98.5 5.6E-07 1.2E-11 83.5 10.2 28 17-44 359-386 (585)
405 PRK14239 phosphate transporter 98.5 9.8E-07 2.1E-11 73.2 10.7 26 17-42 29-54 (252)
406 PRK14261 phosphate ABC transpo 98.5 1.2E-06 2.7E-11 72.7 11.2 25 17-41 30-54 (253)
407 TIGR02857 CydD thiol reductant 98.5 4.3E-07 9.2E-12 83.3 9.2 28 17-44 346-373 (529)
408 KOG2028 ATPase related to the 98.5 3.3E-07 7.2E-12 78.4 7.8 75 17-120 160-237 (554)
409 TIGR00954 3a01203 Peroxysomal 98.5 1.2E-06 2.5E-11 82.5 12.3 41 17-57 476-523 (659)
410 cd03279 ABC_sbcCD SbcCD and ot 98.5 1.9E-06 4.1E-11 69.8 12.0 25 17-41 26-50 (213)
411 PRK14248 phosphate ABC transpo 98.5 1.3E-06 2.9E-11 73.2 11.4 26 17-42 45-70 (268)
412 TIGR02203 MsbA_lipidA lipid A 98.5 7.1E-07 1.5E-11 82.6 10.6 28 17-44 356-383 (571)
413 cd03291 ABCC_CFTR1 The CFTR su 98.5 1.2E-06 2.7E-11 74.0 11.2 41 17-57 61-106 (282)
414 PRK14253 phosphate ABC transpo 98.5 1.7E-06 3.7E-11 71.6 11.9 27 17-43 27-53 (249)
415 PRK08760 replicative DNA helic 98.5 1.7E-06 3.6E-11 78.3 12.5 41 17-57 227-267 (476)
416 TIGR03269 met_CoM_red_A2 methy 98.5 5.5E-07 1.2E-11 82.5 9.6 29 16-44 307-335 (520)
417 PRK10636 putative ABC transpor 98.5 5.4E-07 1.2E-11 84.4 9.7 141 17-188 336-502 (638)
418 PRK14240 phosphate transporter 98.5 1.7E-06 3.6E-11 71.8 11.6 26 17-42 27-52 (250)
419 TIGR00958 3a01208 Conjugate Tr 98.5 6.5E-07 1.4E-11 84.9 10.3 28 17-44 505-532 (711)
420 PRK14244 phosphate ABC transpo 98.5 1.1E-06 2.3E-11 73.0 10.4 27 17-43 29-55 (251)
421 PRK00411 cdc6 cell division co 98.5 4E-07 8.7E-12 80.3 8.3 39 18-56 54-93 (394)
422 PHA02542 41 41 helicase; Provi 98.5 8E-07 1.7E-11 80.1 10.3 179 16-203 187-407 (473)
423 PRK14262 phosphate ABC transpo 98.5 1.4E-06 3E-11 72.3 11.0 26 17-42 27-52 (250)
424 PRK14268 phosphate ABC transpo 98.5 8.7E-07 1.9E-11 73.9 9.8 26 17-42 36-61 (258)
425 TIGR00763 lon ATP-dependent pr 98.5 5.3E-07 1.2E-11 86.2 9.5 34 18-55 346-379 (775)
426 PRK14243 phosphate transporter 98.5 2.2E-06 4.7E-11 71.8 12.2 26 17-42 34-59 (264)
427 cd03240 ABC_Rad50 The catalyti 98.5 3.2E-06 7E-11 68.1 12.7 61 104-190 138-199 (204)
428 PRK12723 flagellar biosynthesi 98.5 4.9E-06 1.1E-10 73.2 14.8 93 17-118 172-267 (388)
429 PRK14263 phosphate ABC transpo 98.5 1.4E-06 3E-11 72.8 11.0 27 17-43 32-58 (261)
430 PRK11819 putative ABC transpor 98.5 9.7E-07 2.1E-11 81.5 10.9 28 17-44 31-58 (556)
431 PRK14275 phosphate ABC transpo 98.5 1.4E-06 2.9E-11 73.9 11.0 26 17-42 63-88 (286)
432 PRK14241 phosphate transporter 98.5 1.1E-06 2.4E-11 73.3 10.2 27 17-43 28-54 (258)
433 PRK04195 replication factor C 98.5 1.3E-06 2.9E-11 79.2 11.6 34 18-55 38-71 (482)
434 PRK13409 putative ATPase RIL; 98.5 6.2E-07 1.3E-11 83.2 9.4 30 15-44 95-124 (590)
435 PRK10789 putative multidrug tr 98.5 5.5E-07 1.2E-11 83.3 9.1 28 17-44 339-366 (569)
436 PRK14257 phosphate ABC transpo 98.5 1.2E-06 2.5E-11 75.8 10.5 27 17-43 106-132 (329)
437 PRK15177 Vi polysaccharide exp 98.5 1.5E-06 3.3E-11 70.4 10.6 29 16-44 10-38 (213)
438 PRK14238 phosphate transporter 98.5 2E-06 4.4E-11 72.3 11.7 27 17-43 48-74 (271)
439 PRK12726 flagellar biosynthesi 98.5 3.7E-06 7.9E-11 73.3 13.4 95 17-118 204-298 (407)
440 COG4181 Predicted ABC-type tra 98.5 3.7E-06 8E-11 65.1 11.9 24 17-40 34-57 (228)
441 PRK09165 replicative DNA helic 98.5 1.7E-06 3.7E-11 78.7 12.0 41 17-57 215-269 (497)
442 PRK14272 phosphate ABC transpo 98.5 2.1E-06 4.5E-11 71.3 11.6 27 17-43 28-54 (252)
443 PRK14270 phosphate ABC transpo 98.5 1.9E-06 4.1E-11 71.5 11.3 27 17-43 28-54 (251)
444 PRK05703 flhF flagellar biosyn 98.5 1.8E-06 3.9E-11 76.9 11.9 41 17-57 219-260 (424)
445 cd03281 ABC_MSH5_euk MutS5 hom 98.5 1.6E-06 3.4E-11 70.4 10.5 24 20-43 30-53 (213)
446 COG0396 sufC Cysteine desulfur 98.5 2.6E-06 5.6E-11 68.8 11.5 57 106-188 163-219 (251)
447 PRK14245 phosphate ABC transpo 98.5 2E-06 4.3E-11 71.3 11.4 25 17-41 27-51 (250)
448 TIGR01846 type_I_sec_HlyB type 98.5 8.1E-07 1.8E-11 84.1 10.1 28 17-44 481-508 (694)
449 PF13604 AAA_30: AAA domain; P 98.5 2E-07 4.3E-12 74.6 5.2 39 18-57 17-55 (196)
450 PRK14258 phosphate ABC transpo 98.5 1.3E-06 2.8E-11 73.0 10.2 28 17-44 31-58 (261)
451 COG3845 ABC-type uncharacteriz 98.5 1.2E-06 2.6E-11 77.6 10.2 126 16-164 27-199 (501)
452 COG0488 Uup ATPase components 98.5 1.5E-06 3.3E-11 79.2 11.2 142 17-189 27-226 (530)
453 TIGR03499 FlhF flagellar biosy 98.5 5.1E-07 1.1E-11 76.3 7.6 41 17-57 192-233 (282)
454 PRK11147 ABC transporter ATPas 98.5 1.4E-06 3.1E-11 81.6 11.3 28 17-44 343-370 (635)
455 PRK14237 phosphate transporter 98.5 2.6E-06 5.6E-11 71.5 11.8 27 17-43 44-70 (267)
456 PLN03211 ABC transporter G-25; 98.5 9E-07 1.9E-11 83.1 9.9 27 17-43 92-118 (659)
457 PRK06620 hypothetical protein; 98.5 6.4E-07 1.4E-11 72.7 7.8 22 20-41 45-66 (214)
458 PRK14260 phosphate ABC transpo 98.5 1.8E-06 3.8E-11 72.1 10.6 27 17-43 31-57 (259)
459 PRK14246 phosphate ABC transpo 98.5 2.4E-06 5.1E-11 71.3 11.3 28 17-44 34-61 (257)
460 TIGR01187 potA spermidine/putr 98.5 5.5E-07 1.2E-11 77.7 7.7 21 24-44 1-21 (325)
461 TIGR02204 MsbA_rel ABC transpo 98.5 9.8E-07 2.1E-11 81.7 9.9 28 17-44 364-391 (576)
462 PRK14255 phosphate ABC transpo 98.5 1.9E-06 4.2E-11 71.5 10.7 26 17-42 29-54 (252)
463 PRK15064 ABC transporter ATP-b 98.5 1.4E-06 3E-11 80.0 10.8 141 17-188 343-510 (530)
464 cd01131 PilT Pilus retraction 98.5 2.4E-06 5.2E-11 68.5 10.9 35 20-54 2-36 (198)
465 PRK10982 galactose/methyl gala 98.5 1.9E-06 4.1E-11 78.4 11.5 57 106-188 410-466 (491)
466 TIGR01193 bacteriocin_ABC ABC- 98.5 7.2E-07 1.6E-11 84.6 9.0 28 17-44 498-525 (708)
467 KOG1969 DNA replication checkp 98.4 5.6E-07 1.2E-11 82.8 7.7 35 17-55 324-358 (877)
468 PRK05342 clpX ATP-dependent pr 98.4 8.3E-07 1.8E-11 78.7 8.7 26 18-43 107-132 (412)
469 cd03115 SRP The signal recogni 98.4 3.3E-06 7.2E-11 66.0 11.3 36 21-57 2-37 (173)
470 PRK14271 phosphate ABC transpo 98.4 2.3E-06 4.9E-11 72.2 10.9 28 17-44 45-72 (276)
471 PLN03025 replication factor C 98.4 1.9E-06 4.2E-11 74.1 10.6 27 18-44 33-59 (319)
472 PRK15134 microcin C ABC transp 98.4 1.5E-06 3.4E-11 79.7 10.6 27 17-43 310-336 (529)
473 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 1.6E-06 3.4E-11 80.0 10.6 141 17-188 346-515 (552)
474 PF00448 SRP54: SRP54-type pro 98.4 1.7E-06 3.7E-11 69.3 9.5 37 20-57 2-38 (196)
475 PRK08506 replicative DNA helic 98.4 2.5E-06 5.4E-11 77.2 11.6 40 17-57 190-229 (472)
476 PRK09376 rho transcription ter 98.4 1.3E-06 2.8E-11 76.2 9.3 28 17-44 167-194 (416)
477 PRK06321 replicative DNA helic 98.4 2.2E-06 4.9E-11 77.3 11.2 41 17-57 224-264 (472)
478 PRK11034 clpA ATP-dependent Cl 98.4 8.2E-07 1.8E-11 84.2 8.7 87 18-120 206-293 (758)
479 COG4167 SapF ABC-type antimicr 98.4 2.5E-06 5.5E-11 66.7 9.9 37 16-53 36-72 (267)
480 PRK14251 phosphate ABC transpo 98.4 3E-06 6.5E-11 70.3 11.1 27 17-43 28-54 (251)
481 cd03227 ABC_Class2 ABC-type Cl 98.4 6E-06 1.3E-10 64.0 12.1 28 18-45 20-47 (162)
482 COG4988 CydD ABC-type transpor 98.4 1.5E-06 3.3E-11 78.4 9.8 28 17-44 345-372 (559)
483 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 2.4E-06 5.2E-11 78.8 11.5 28 17-44 29-56 (552)
484 CHL00095 clpC Clp protease ATP 98.4 1.1E-06 2.4E-11 84.5 9.5 81 18-120 199-286 (821)
485 PRK09087 hypothetical protein; 98.4 2.1E-06 4.6E-11 70.3 9.9 32 18-55 43-74 (226)
486 PRK10416 signal recognition pa 98.4 8.7E-06 1.9E-10 69.9 14.0 40 17-57 112-151 (318)
487 KOG0057 Mitochondrial Fe/S clu 98.4 4.2E-06 9.1E-11 75.1 12.3 37 17-56 376-412 (591)
488 PRK10535 macrolide transporter 98.4 1.7E-06 3.7E-11 81.2 10.5 28 17-44 32-59 (648)
489 smart00534 MUTSac ATPase domai 98.4 2.4E-06 5.1E-11 67.8 9.8 23 21-43 1-23 (185)
490 PRK14956 DNA polymerase III su 98.4 1.5E-06 3.3E-11 77.8 9.6 27 19-45 40-66 (484)
491 cd03239 ABC_SMC_head The struc 98.4 1.2E-05 2.5E-10 63.5 13.6 25 20-44 23-47 (178)
492 COG4161 ArtP ABC-type arginine 98.4 4.5E-06 9.7E-11 64.1 10.7 72 89-188 145-216 (242)
493 PTZ00112 origin recognition co 98.4 1.8E-06 3.8E-11 81.7 10.3 124 18-168 780-913 (1164)
494 PF05673 DUF815: Protein of un 98.4 1.5E-06 3.3E-11 71.0 8.7 37 18-55 51-87 (249)
495 PRK12402 replication factor C 98.4 2.2E-06 4.7E-11 73.9 10.2 37 20-56 37-74 (337)
496 PRK14963 DNA polymerase III su 98.4 2.9E-06 6.4E-11 77.1 11.4 26 19-44 36-61 (504)
497 TIGR02928 orc1/cdc6 family rep 98.4 7.8E-07 1.7E-11 77.7 7.4 39 18-56 39-82 (365)
498 KOG0061 Transporter, ABC super 98.4 1.4E-06 3E-11 81.2 9.3 28 17-44 54-81 (613)
499 TIGR02858 spore_III_AA stage I 98.4 9.5E-07 2.1E-11 74.1 7.5 25 20-44 112-136 (270)
500 COG4987 CydC ABC-type transpor 98.4 2.6E-06 5.7E-11 76.2 10.6 28 17-44 362-389 (573)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.3e-21 Score=162.96 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=112.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.|+.++|+|||||||||.||+++|. +.+..++-+ ...+++...+++. ...++++|
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~----~T~AtFIrv-------vgSElVqKYiGEG--------------aRlVRelF 237 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVAN----QTDATFIRV-------VGSELVQKYIGEG--------------ARLVRELF 237 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh----ccCceEEEe-------ccHHHHHHHhccc--------------hHHHHHHH
Confidence 5889999999999999999995554 556666666 3445555555443 67899999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..++ ++.|++||||||+++.. .|.+...+.++.+++++++|++.+.-+...+ .+=||++||+++......+.
T Consensus 238 ~lAr--ekaPsIIFiDEIDAIg~-----kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~-nvKVI~ATNR~D~LDPALLR 309 (406)
T COG1222 238 ELAR--EKAPSIIFIDEIDAIGA-----KRFDSGTSGDREVQRTMLELLNQLDGFDPRG-NVKVIMATNRPDILDPALLR 309 (406)
T ss_pred HHHh--hcCCeEEEEechhhhhc-----ccccCCCCchHHHHHHHHHHHHhccCCCCCC-CeEEEEecCCccccChhhcC
Confidence 9988 55699999999999998 6777777788889999999988887775544 46678889988877777788
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..++|+.++++..
T Consensus 310 PGR~DRkIEfplP 322 (406)
T COG1222 310 PGRFDRKIEFPLP 322 (406)
T ss_pred CCcccceeecCCC
Confidence 8999999999864
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.2e-20 Score=165.83 Aligned_cols=139 Identities=20% Similarity=0.255 Sum_probs=114.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.|++++||+||||||||.||+++|. +.+-+++-| ..++.++.+.+++ ++.++++|
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAg----el~vPf~~i-------sApeivSGvSGES--------------EkkiRelF 275 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAG----ELGVPFLSI-------SAPEIVSGVSGES--------------EKKIRELF 275 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhh----hcCCceEee-------cchhhhcccCccc--------------HHHHHHHH
Confidence 5889999999999999999997766 555677777 5566666666655 88999999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
+.+. ...||+||||||+++.+ .|...+.+++.+++.+|+.+|+.+..-+..|..|+||++||++|+.....-.
T Consensus 276 ~~A~--~~aPcivFiDeIDAI~p-----kRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRR 348 (802)
T KOG0733|consen 276 DQAK--SNAPCIVFIDEIDAITP-----KREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRR 348 (802)
T ss_pred HHHh--ccCCeEEEeeccccccc-----chhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhc
Confidence 9887 55699999999999999 5666778899999999999999998777778999999999999987665445
Q ss_pred HHhhccceEEE
Q 041690 177 KRWISSIFTVK 187 (233)
Q Consensus 177 ~~~~~~~~~i~ 187 (233)
..+|++-+.+.
T Consensus 349 aGRFdrEI~l~ 359 (802)
T KOG0733|consen 349 AGRFDREICLG 359 (802)
T ss_pred cccccceeeec
Confidence 55778765544
No 3
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.7e-19 Score=160.20 Aligned_cols=148 Identities=17% Similarity=0.247 Sum_probs=117.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
..++++|++||||||||.||+++|. +.|.+++-| ..++.+..+.+++ +..++.+|
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVAN----Eag~NFisV-------KGPELlNkYVGES--------------ErAVR~vF 597 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVAN----EAGANFISV-------KGPELLNKYVGES--------------ERAVRQVF 597 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhh----hccCceEee-------cCHHHHHHHhhhH--------------HHHHHHHH
Confidence 3678999999999999999995554 666677766 6677777777765 77899999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..++ ...||+||+||++++.+ .|+........+++++|+.-++.+ .....|.||++||++|......+.
T Consensus 598 qRAR--~saPCVIFFDEiDaL~p-----~R~~~~s~~s~RvvNqLLtElDGl----~~R~gV~viaATNRPDiIDpAiLR 666 (802)
T KOG0733|consen 598 QRAR--ASAPCVIFFDEIDALVP-----RRSDEGSSVSSRVVNQLLTELDGL----EERRGVYVIAATNRPDIIDPAILR 666 (802)
T ss_pred HHhh--cCCCeEEEecchhhcCc-----ccCCCCchhHHHHHHHHHHHhccc----ccccceEEEeecCCCcccchhhcC
Confidence 9887 55699999999999999 455455666778899999988888 455679999999999987777788
Q ss_pred HHhhccceEEEec--CCccEEEeecc
Q 041690 177 KRWISSIFTVKGD--GPGSFLLRNKN 200 (233)
Q Consensus 177 ~~~~~~~~~i~~~--~~~~~~l~~~~ 200 (233)
..++|..+++... .++.-+|..+.
T Consensus 667 PGRlDk~LyV~lPn~~eR~~ILK~~t 692 (802)
T KOG0733|consen 667 PGRLDKLLYVGLPNAEERVAILKTIT 692 (802)
T ss_pred CCccCceeeecCCCHHHHHHHHHHHh
Confidence 9999999999864 33344444433
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.8e-20 Score=165.72 Aligned_cols=137 Identities=19% Similarity=0.239 Sum_probs=112.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.|+..+|+|||||||||++|+.+|. +.+.++++| ..++.++.+.+++ +..++++|
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAn----e~~~nFlsv-------kgpEL~sk~vGeS--------------Er~ir~iF 520 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALAN----EAGMNFLSV-------KGPELFSKYVGES--------------ERAIREVF 520 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhh----hhcCCeeec-------cCHHHHHHhcCch--------------HHHHHHHH
Confidence 4889999999999999999997665 556788888 5677777777766 77999999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..++ +..|++||+|||+++.. +|+++..+...++.++|+..||.+ .....|+|+++||+++..+...+.
T Consensus 521 ~kAR--~~aP~IiFfDEiDsi~~-----~R~g~~~~v~~RVlsqLLtEmDG~----e~~k~V~ViAATNRpd~ID~ALlR 589 (693)
T KOG0730|consen 521 RKAR--QVAPCIIFFDEIDALAG-----SRGGSSSGVTDRVLSQLLTEMDGL----EALKNVLVIAATNRPDMIDPALLR 589 (693)
T ss_pred HHHh--hcCCeEEehhhHHhHhh-----ccCCCccchHHHHHHHHHHHcccc----cccCcEEEEeccCChhhcCHHHcC
Confidence 9887 44599999999999998 555555566778888999999988 445689999999999887766666
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..++|.+++++..
T Consensus 590 PGRlD~iiyVplP 602 (693)
T KOG0730|consen 590 PGRLDRIIYVPLP 602 (693)
T ss_pred CcccceeEeecCc
Confidence 7799999999974
No 5
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.1e-18 Score=147.75 Aligned_cols=167 Identities=16% Similarity=0.296 Sum_probs=113.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
+|+.+||.|.||.|||||++|++..++ ..+ +|+||++|+....-.-+.. .++... +++ |+-.+.++..+++
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA-~~~-~vLYVsGEES~~QiklRA~-RL~~~~---~~l---~l~aEt~~e~I~~ 162 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLA-KRG-KVLYVSGEESLQQIKLRAD-RLGLPT---NNL---YLLAETNLEDIIA 162 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHH-hcC-cEEEEeCCcCHHHHHHHHH-HhCCCc---cce---EEehhcCHHHHHH
Confidence 999999999999999999999999999 545 9999999954332111110 111000 133 3333445555555
Q ss_pred HhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHH
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYK 177 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~ 177 (233)
.+. +..|+++|||||+.++.....+..++..+.++. ..++++..+.++..++++++........+-.+++
T Consensus 163 ~l~--~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~--------t~~L~~~AK~~~i~~fiVGHVTKeG~IAGPrvLE 232 (456)
T COG1066 163 ELE--QEKPDLVVIDSIQTLYSEEITSAPGSVSQVREV--------AAELMRLAKTKNIAIFIVGHVTKEGAIAGPRVLE 232 (456)
T ss_pred HHH--hcCCCEEEEeccceeecccccCCCCcHHHHHHH--------HHHHHHHHHHcCCeEEEEEEEcccccccCchhee
Confidence 444 344999999999999986433333333334433 2345556678899999999877543333334999
Q ss_pred HhhccceEEEecCCccEEEeeccCcc
Q 041690 178 RWISSIFTVKGDGPGSFLLRNKNYSR 203 (233)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~l~~~~~~~ 203 (233)
|.+|++++++++....|++.+..+++
T Consensus 233 HmVDtVlyFEGd~~~~~RiLR~vKNR 258 (456)
T COG1066 233 HMVDTVLYFEGDRHSRYRILRSVKNR 258 (456)
T ss_pred eeeeEEEEEeccCCCceeeeehhccc
Confidence 99999999999988899998865543
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.1e-18 Score=155.47 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=110.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+.+++|+|||||||||.+|+++|.++. .-|++. ..++.+.+..+.+ ++++++.|
T Consensus 703 rkRSGILLYGPPGTGKTLlAKAVATEcs------L~FlSV-----KGPELLNMYVGqS--------------E~NVR~VF 757 (953)
T KOG0736|consen 703 RKRSGILLYGPPGTGKTLLAKAVATECS------LNFLSV-----KGPELLNMYVGQS--------------EENVREVF 757 (953)
T ss_pred cccceeEEECCCCCchHHHHHHHHhhce------eeEEee-----cCHHHHHHHhcch--------------HHHHHHHH
Confidence 4789999999999999999997776444 445442 4466666655554 88999999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
+.++ ...||+||+||++++.+.+ .+.+++.+--.+++.||+.-+|.+-.- ....|+||++||+||-.+...+.
T Consensus 758 erAR--~A~PCVIFFDELDSlAP~R---G~sGDSGGVMDRVVSQLLAELDgls~~--~s~~VFViGATNRPDLLDpALLR 830 (953)
T KOG0736|consen 758 ERAR--SAAPCVIFFDELDSLAPNR---GRSGDSGGVMDRVVSQLLAELDGLSDS--SSQDVFVIGATNRPDLLDPALLR 830 (953)
T ss_pred HHhh--ccCCeEEEeccccccCccC---CCCCCccccHHHHHHHHHHHhhcccCC--CCCceEEEecCCCccccChhhcC
Confidence 9887 5559999999999999964 444555666667777777767776321 45679999999999877777788
Q ss_pred HHhhccceEEEecCCc
Q 041690 177 KRWISSIFTVKGDGPG 192 (233)
Q Consensus 177 ~~~~~~~~~i~~~~~~ 192 (233)
..+||..+++....+.
T Consensus 831 PGRFDKLvyvG~~~d~ 846 (953)
T KOG0736|consen 831 PGRFDKLVYVGPNEDA 846 (953)
T ss_pred CCccceeEEecCCccH
Confidence 8999999999875443
No 7
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=99.74 E-value=7.3e-17 Score=134.20 Aligned_cols=188 Identities=18% Similarity=0.187 Sum_probs=121.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEecCCcccccccccccccC----CchhhhcceEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCNRSRLQSKRPYLSQSID----PSSHVFKLIQMKYVE 87 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~e~~l~~~~~~~~~~~~----~~~~~~~~i~~~~~~ 87 (233)
+.|.++.|+||||||||.||.|++..+... .+.+|+|||||+.|.. .++.++.+ ..+.++++|.+....
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~--~Rl~~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSP--ERLQQIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-H--HHHHHHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCH--HHHHHHhhccccccchhhhceeeeecC
Confidence 589999999999999999999999876532 3678999999976543 33333321 345677888887766
Q ss_pred CHHHHHHHHHHhcc--cCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecC
Q 041690 88 DDEEIKKYFAAFHQ--HDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTH 165 (233)
Q Consensus 88 ~~~~l~~~~~~~~~--~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~ 165 (233)
....+..++..+.. .+...++|||||++++++.... + .+......+.|..+...++.++.+....||++++.
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~----~--~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv 187 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFS----G--RGDLAERQRMLARLARILKRLARKYNIAVVVTNQV 187 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSG----S--TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHc----c--chhhHHHHHHHHHHHHHHHHHHHhCCceEEeecee
Confidence 66655555554321 1334899999999999985211 1 11122234566667777777777666555555542
Q ss_pred --CC----------CCchhHHHHHHhhccceEEEec-C-CccEEEeeccCcccccccccceeeeEEe
Q 041690 166 --LG----------NSTRLLYIYKRWISSIFTVKGD-G-PGSFLLRNKNYSRSCGLGKTRIAKYSIA 218 (233)
Q Consensus 166 --~~----------~~~~~~~~~~~~~~~~~~i~~~-~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 218 (233)
.. ..|.+...|.|++...+.+... + .+...+.++.+.+ ...+.|.|.
T Consensus 188 ~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~~~~R~~~i~ksp~~p------~~~~~f~It 248 (256)
T PF08423_consen 188 TTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGRGSERVATIVKSPSLP------EGSASFQIT 248 (256)
T ss_dssp CSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECSTTEEEEEEEECSSSS------SEEEEEEEE
T ss_pred eecCCcccccccccceecCcchhhhhccEEEEEEeCCCCeEEEEEeECCCCC------CceEEEEEe
Confidence 11 2356788999999999999974 2 3445555544432 234566653
No 8
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=99.73 E-value=1.7e-16 Score=128.28 Aligned_cols=160 Identities=21% Similarity=0.211 Sum_probs=97.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCC-chhhhcceEEEEecCHHH---
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDP-SSHVFKLIQMKYVEDDEE--- 91 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~--- 91 (233)
.++|+.++|+||||||||+|+.+++.+.+ ..|.+++|+++|+ ..+.++.+.... .+...+++.+........
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~-~~g~~v~yi~~e~---~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAA-RQGKKVVYIDTEG---LSPERFKQIAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEECCC---CCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHH
Confidence 35899999999999999999999999988 6689999999885 233444333221 123334665544433222
Q ss_pred -HHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHH-hhhcCCcEEEEeecCC---
Q 041690 92 -IKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITH-ANKKSPCKLLLSDTHL--- 166 (233)
Q Consensus 92 -l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-l~~~~~~vlvi~~~~~--- 166 (233)
+..+...+. +..+++||||+++++++.. ..+... ...+.+..++..+.. +++.+.+++++++...
T Consensus 85 ~~~~l~~~~~--~~~~~lvVIDSis~l~~~~----~~~~~~----~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~~ 154 (209)
T TIGR02237 85 AIQKTSKFID--RDSASLVVVDSFTALYRLE----LSDDRI----SRNRELARQLTLLLSLARKKNLAVVITNQVYTDVN 154 (209)
T ss_pred HHHHHHHHHh--hcCccEEEEeCcHHHhHHH----hCCccH----HHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEecC
Confidence 222222222 2349999999999998631 111111 111223333333333 3556666666655431
Q ss_pred --CCCchhHHHHHHhhccceEEEec
Q 041690 167 --GNSTRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 167 --~~~~~~~~~~~~~~~~~~~i~~~ 189 (233)
...|.+.+.+.+|.+.++.+...
T Consensus 155 ~~~~~~~gg~~~~~~~d~vi~l~~~ 179 (209)
T TIGR02237 155 NGTLRPLGGHLLEHWSKVILRLEKF 179 (209)
T ss_pred CCCCcCCCcchhheeeeEEEEEEec
Confidence 12344555789999999999875
No 9
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=99.73 E-value=1.5e-16 Score=135.75 Aligned_cols=188 Identities=12% Similarity=0.079 Sum_probs=109.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEecCCccccccccccccc---C-CchhhhcceEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCNRSRLQSKRPYLSQSI---D-PSSHVFKLIQMKYVE 87 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~e~~l~~~~~~~~~~~---~-~~~~~~~~i~~~~~~ 87 (233)
++|++++|+||||||||+||+|++...+.. .+.+++||++|+.|. ++++.++. + +.+..++++.+....
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~--~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFR--PDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCC--HHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 689999999999999999999999766522 357999999997543 23333222 1 234455666653333
Q ss_pred CHHHHHHHHHHhc--ccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhh-hcCCcEEEEeec
Q 041690 88 DDEEIKKYFAAFH--QHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHAN-KKSPCKLLLSDT 164 (233)
Q Consensus 88 ~~~~l~~~~~~~~--~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~-~~~~~vlvi~~~ 164 (233)
..+...+++..+. ..+..+++|||||++++++....+ + . .....++.+..++..+..+. +.+.+++++.+.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~----g-~~~~r~~~l~~~~~~L~~la~~~~vavvitNqv 245 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-R----G-ELSERQQKLAQMLSRLNKISEEFNVAVFVTNQV 245 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-c----c-chHHHHHHHHHHHHHHHHHHHHcCcEEEEECce
Confidence 3433333333221 113358999999999998842111 1 0 01111222344444444443 445555555433
Q ss_pred CC-----------CCCchhHHHHHHhhccceEEEec--CCccEEEeeccCcccccccccceeeeEEe
Q 041690 165 HL-----------GNSTRLLYIYKRWISSIFTVKGD--GPGSFLLRNKNYSRSCGLGKTRIAKYSIA 218 (233)
Q Consensus 165 ~~-----------~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 218 (233)
.. +-.|.+...+.|+++..+.+... +.+...+.++.+.+ ...|.|.|.
T Consensus 246 ~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~~~~R~~~~~~sp~~p------~~~~~f~i~ 306 (313)
T TIGR02238 246 QADPGATMTFIADPKKPIGGHVLAHASTTRILLRKGRGEERVAKLYDSPDMP------EAEASFQIT 306 (313)
T ss_pred EecCCcccccCCCCccCcchhhhhhheeEEEEEEecCCCeEEEEEeeCCCCC------CeEEEEEEe
Confidence 21 12456677999999999999973 23334444444332 234667654
No 10
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.3e-17 Score=136.09 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=106.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.|-+.+|||||||+|||-||+++|. +.+..++-| ++...++.|++++ ...++.+|
T Consensus 164 ~PwrgiLLyGPPGTGKSYLAKAVAT----EAnSTFFSv-------SSSDLvSKWmGES--------------EkLVknLF 218 (439)
T KOG0739|consen 164 KPWRGILLYGPPGTGKSYLAKAVAT----EANSTFFSV-------SSSDLVSKWMGES--------------EKLVKNLF 218 (439)
T ss_pred CcceeEEEeCCCCCcHHHHHHHHHh----hcCCceEEe-------ehHHHHHHHhccH--------------HHHHHHHH
Confidence 3678999999999999999996554 555555555 4566778888776 67888999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
+.++ ++.|+|||||||+++.. .|+.+..+..+++...++..|+... .....++|++++|.+-... .++
T Consensus 219 emAR--e~kPSIIFiDEiDslcg-----~r~enEseasRRIKTEfLVQMqGVG---~d~~gvLVLgATNiPw~LD--sAI 286 (439)
T KOG0739|consen 219 EMAR--ENKPSIIFIDEIDSLCG-----SRSENESEASRRIKTEFLVQMQGVG---NDNDGVLVLGATNIPWVLD--SAI 286 (439)
T ss_pred HHHH--hcCCcEEEeehhhhhcc-----CCCCCchHHHHHHHHHHHHhhhccc---cCCCceEEEecCCCchhHH--HHH
Confidence 9888 56699999999998887 5666777777788888888887764 3456799999999886443 367
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
+|+|+..++|+-.
T Consensus 287 RRRFekRIYIPLP 299 (439)
T KOG0739|consen 287 RRRFEKRIYIPLP 299 (439)
T ss_pred HHHhhcceeccCC
Confidence 8888888888854
No 11
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=99.72 E-value=3.4e-16 Score=134.61 Aligned_cols=197 Identities=14% Similarity=0.085 Sum_probs=114.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEecCCccccccccccccc---C-CchhhhcceEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCNRSRLQSKRPYLSQSI---D-PSSHVFKLIQMKYVE 87 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~e~~l~~~~~~~~~~~---~-~~~~~~~~i~~~~~~ 87 (233)
++|++++|+||||||||+||+|++.+.+.. .+.+++||++|+.|.. +++.++. + +.+.++++|.+....
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~p--eRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRP--DRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCH--HHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 699999999999999999999999876531 1469999999975532 3333321 1 234455666654444
Q ss_pred CHHHHHHHHHHhc--ccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHh-hhcCCcEEEEeec
Q 041690 88 DDEEIKKYFAAFH--QHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHA-NKKSPCKLLLSDT 164 (233)
Q Consensus 88 ~~~~l~~~~~~~~--~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l-~~~~~~vlvi~~~ 164 (233)
..+.+..++..+. ..+..+++|||||++++++....+ + +.....++.+..++..+..+ ++.+.+++++...
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~-r-----g~l~~rq~~L~~~~~~L~~lA~~~~vavvvTNqv 275 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG-R-----GELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQV 275 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC-c-----cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEecE
Confidence 4443333333221 113348999999999998842111 1 11111123344444444444 4456656555443
Q ss_pred C-CC---------CCchhHHHHHHhhccceEEEecCCccEEEeeccCcccccccccceeeeEEeeehhhccCCCcc
Q 041690 165 H-LG---------NSTRLLYIYKRWISSIFTVKGDGPGSFLLRNKNYSRSCGLGKTRIAKYSIALKDLVFEGITDD 230 (233)
Q Consensus 165 ~-~~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (233)
. .+ ..|.+...+.|++...+.+.... +..++.+...+++ .. ...+.|.|.- +||.|.
T Consensus 276 ~~~~~~~~~~~~~~~pagG~~~~h~~~~Rl~l~k~~-~~~R~~~v~ksp~--lp-~~~~~f~It~-----~GI~d~ 342 (344)
T PLN03187 276 IADPGGGMFISDPKKPAGGHVLAHAATIRLMLRKGK-GEQRVCKVFDAPN--LP-EAEAEFQITS-----GGIMDA 342 (344)
T ss_pred EEcCCcccccCCCCCCCCchhhheeeeEEEEEEcCC-CCeEEEEEEECCC--CC-CceEEEEEeC-----CCccCC
Confidence 2 11 14667789999999999999742 2333444333332 22 2235677654 555543
No 12
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=6.7e-17 Score=137.32 Aligned_cols=139 Identities=16% Similarity=0.175 Sum_probs=105.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.|-..+|++||||||||.||+++|. +.+..++-| ++....+.+.+++ ++.++-+|
T Consensus 243 rPWkgvLm~GPPGTGKTlLAKAvAT----Ec~tTFFNV-------SsstltSKwRGeS--------------EKlvRlLF 297 (491)
T KOG0738|consen 243 RPWKGVLMVGPPGTGKTLLAKAVAT----ECGTTFFNV-------SSSTLTSKWRGES--------------EKLVRLLF 297 (491)
T ss_pred cccceeeeeCCCCCcHHHHHHHHHH----hhcCeEEEe-------chhhhhhhhccch--------------HHHHHHHH
Confidence 5888999999999999999997665 444555556 3344455665555 67888888
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCC-cchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTN-PRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYI 175 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~ 175 (233)
+.++. ..|++||||||+++.. +|++. ..+..+++...|+.+|+.+..-......|+|+++||.|-... -+
T Consensus 298 emARf--yAPStIFiDEIDslcs-----~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiD--EA 368 (491)
T KOG0738|consen 298 EMARF--YAPSTIFIDEIDSLCS-----QRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDID--EA 368 (491)
T ss_pred HHHHH--hCCceeehhhHHHHHh-----cCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchH--HH
Confidence 88873 3499999999999998 55544 455666778999999999987666667789999999886543 36
Q ss_pred HHHhhccceEEEec
Q 041690 176 YKRWISSIFTVKGD 189 (233)
Q Consensus 176 ~~~~~~~~~~i~~~ 189 (233)
++|++...++|+-.
T Consensus 369 lrRRlEKRIyIPLP 382 (491)
T KOG0738|consen 369 LRRRLEKRIYIPLP 382 (491)
T ss_pred HHHHHhhheeeeCC
Confidence 77777877777753
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.5e-17 Score=132.35 Aligned_cols=141 Identities=15% Similarity=0.226 Sum_probs=101.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.|++++|+|||||||||.|++++|.+.. ..++-+ ...+|+...+++. ...+++.|
T Consensus 187 dpprgvllygppg~gktml~kava~~t~----a~firv-------vgsefvqkylgeg--------------prmvrdvf 241 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTT----AAFIRV-------VGSEFVQKYLGEG--------------PRMVRDVF 241 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccc----hheeee-------ccHHHHHHHhccC--------------cHHHHHHH
Confidence 4889999999999999999996665332 233333 2344555444433 66889999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..++ ++.|++|||||++++.. +|.+.+.+.++..++.|.++++.+..+. +...+-+|.++|+.+......+.
T Consensus 242 rlak--enapsiifideidaiat-----krfdaqtgadrevqril~ellnqmdgfd-q~~nvkvimatnradtldpallr 313 (408)
T KOG0727|consen 242 RLAK--ENAPSIIFIDEIDAIAT-----KRFDAQTGADREVQRILIELLNQMDGFD-QTTNVKVIMATNRADTLDPALLR 313 (408)
T ss_pred HHHh--ccCCcEEEeehhhhHhh-----hhccccccccHHHHHHHHHHHHhccCcC-cccceEEEEecCcccccCHhhcC
Confidence 9887 67799999999999998 6777777788888888888877776553 34456667777776655555566
Q ss_pred HHhhccceEEEecC
Q 041690 177 KRWISSIFTVKGDG 190 (233)
Q Consensus 177 ~~~~~~~~~i~~~~ 190 (233)
..++++.++++-.+
T Consensus 314 pgrldrkiefplpd 327 (408)
T KOG0727|consen 314 PGRLDRKIEFPLPD 327 (408)
T ss_pred CccccccccCCCCc
Confidence 77888877777543
No 14
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.70 E-value=9.6e-16 Score=125.25 Aligned_cols=162 Identities=15% Similarity=0.159 Sum_probs=96.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccC-CchhhhcceEEEEecCHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSID-PSSHVFKLIQMKYVEDDEEIKKY 95 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~ 95 (233)
++|.+++|+||||+|||+||.+++.+.+ ..+.+|+|+++|. ..++++.+... ..+...+++.+........+...
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~-~~~~~v~yi~~e~---~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAA-KNGKKVIYIDTEG---LSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEECCC---CCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 6899999999999999999999999988 6789999999882 22233333322 12334445555433333332222
Q ss_pred HHHhc-ccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHH-HhhhcCCcEEEEeecCCC-----C
Q 041690 96 FAAFH-QHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAIT-HANKKSPCKLLLSDTHLG-----N 168 (233)
Q Consensus 96 ~~~~~-~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~l~~~~~~vlvi~~~~~~-----~ 168 (233)
+..+. .....+++||||++++++.... .+..... ...+.+..++..+. .+++.+.+++++.+.... .
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~al~~~~~----~~~~~~~--~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~ 170 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSATSLYRLEL----EDEEDNS--KLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSDGL 170 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcHHHhHHHh----cCCccHH--HHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCCcc
Confidence 22211 1113489999999999986310 0001111 11122222222233 334567777776655421 1
Q ss_pred CchhHHHHHHhhccceEEEe
Q 041690 169 STRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~ 188 (233)
.+.+.+.+++|++.++.+..
T Consensus 171 ~~~gg~~~~~~~d~ii~l~~ 190 (225)
T PRK09361 171 RPLGGHTLEHWSKTILRLEK 190 (225)
T ss_pred cCCCcchhhhhccEEEEEEE
Confidence 34455689999999999987
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.4e-17 Score=142.11 Aligned_cols=136 Identities=15% Similarity=0.216 Sum_probs=98.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
-+.++||.||||||||.||+++ +.+.+-+++|.++- +|-....+.. ...++++|+
T Consensus 336 LPKGVLLvGPPGTGKTlLARAv----AGEA~VPFF~~sGS-------EFdEm~VGvG--------------ArRVRdLF~ 390 (752)
T KOG0734|consen 336 LPKGVLLVGPPGTGKTLLARAV----AGEAGVPFFYASGS-------EFDEMFVGVG--------------ARRVRDLFA 390 (752)
T ss_pred CCCceEEeCCCCCchhHHHHHh----hcccCCCeEecccc-------chhhhhhccc--------------HHHHHHHHH
Confidence 4568999999999999999954 44777888887532 2211111111 678999999
Q ss_pred HhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHH
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYK 177 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~ 177 (233)
.++ ...|||||||||+++-. .|..........-.+||+.-||.+ +++..+|+|++||.++..+-..+..
T Consensus 391 aAk--~~APcIIFIDEiDavG~-----kR~~~~~~y~kqTlNQLLvEmDGF----~qNeGiIvigATNfpe~LD~AL~RP 459 (752)
T KOG0734|consen 391 AAK--ARAPCIIFIDEIDAVGG-----KRNPSDQHYAKQTLNQLLVEMDGF----KQNEGIIVIGATNFPEALDKALTRP 459 (752)
T ss_pred HHH--hcCCeEEEEechhhhcc-----cCCccHHHHHHHHHHHHHHHhcCc----CcCCceEEEeccCChhhhhHHhcCC
Confidence 988 44599999999999987 443333333333346666666666 5677899999999998777677778
Q ss_pred HhhccceEEEec
Q 041690 178 RWISSIFTVKGD 189 (233)
Q Consensus 178 ~~~~~~~~i~~~ 189 (233)
.+||..+.++..
T Consensus 460 GRFD~~v~Vp~P 471 (752)
T KOG0734|consen 460 GRFDRHVTVPLP 471 (752)
T ss_pred CccceeEecCCC
Confidence 899999988863
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1e-16 Score=131.85 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=99.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.|+.++++||+||+|||.||+++|. +....++-+ -..+.+...+++. ...++++|
T Consensus 217 kpPKGVIlyG~PGTGKTLLAKAVAN----qTSATFlRv-------vGseLiQkylGdG--------------pklvRqlF 271 (440)
T KOG0726|consen 217 KPPKGVILYGEPGTGKTLLAKAVAN----QTSATFLRV-------VGSELIQKYLGDG--------------PKLVRELF 271 (440)
T ss_pred CCCCeeEEeCCCCCchhHHHHHHhc----ccchhhhhh-------hhHHHHHHHhccc--------------hHHHHHHH
Confidence 4888999999999999999995544 322222222 1112222222222 66888999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. +..|+++|||||+++-. .|++.+++.++.+++++++++|.+.-+..+|. |-||.++|..+......+.
T Consensus 272 ~vA~--e~apSIvFiDEIdAiGt-----KRyds~SggerEiQrtmLELLNQldGFdsrgD-vKvimATnrie~LDPaLiR 343 (440)
T KOG0726|consen 272 RVAE--EHAPSIVFIDEIDAIGT-----KRYDSNSGGEREIQRTMLELLNQLDGFDSRGD-VKVIMATNRIETLDPALIR 343 (440)
T ss_pred HHHH--hcCCceEEeehhhhhcc-----ccccCCCccHHHHHHHHHHHHHhccCccccCC-eEEEEecccccccCHhhcC
Confidence 9887 55599999999999988 78888888889999999999999887766554 4555666665555555577
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..+.|+.+.++..
T Consensus 344 PGrIDrKIef~~p 356 (440)
T KOG0726|consen 344 PGRIDRKIEFPLP 356 (440)
T ss_pred CCccccccccCCC
Confidence 7788887777653
No 17
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.68 E-value=9.8e-16 Score=124.58 Aligned_cols=164 Identities=16% Similarity=0.121 Sum_probs=96.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCC-chhhhcceEEEEecCHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDP-SSHVFKLIQMKYVEDDEEIKK 94 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~l~~ 94 (233)
.++|++++|+|+||||||+|+.+++...+ ..|.+++|+++++.+. +++.+..+. .+....++.+........+..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~-~~g~~v~yi~~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETA-GQGKKVAYIDTEGLSS---ERFRQIAGDRPERAASSIIVFEPMDFNEQGR 91 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEECCCCCH---HHHHHHHhHChHhhhcCEEEEeCCCHHHHHH
Confidence 35899999999999999999999999988 6689999999886443 222222211 111223444433332222222
Q ss_pred HHHHhc-ccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHh-hhcCCcEEEEeecCCC-----
Q 041690 95 YFAAFH-QHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHA-NKKSPCKLLLSDTHLG----- 167 (233)
Q Consensus 95 ~~~~~~-~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l-~~~~~~vlvi~~~~~~----- 167 (233)
.+..+. .....+++||||++++++... ..+... .....+.+..++..+..+ ++.+.+++++++.+..
T Consensus 92 ~~~~~~~~~~~~~~lvvIDsi~~l~~~~----~~~~~~--~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~ 165 (218)
T cd01394 92 AIQETETFADEKVDLVVVDSATALYRLE----LGDDDT--TIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGS 165 (218)
T ss_pred HHHHHHHHHhcCCcEEEEechHHhhhHH----hcCccc--hHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCc
Confidence 222111 112238999999999997631 111111 111222333444444443 5567777777665421
Q ss_pred CCchhHHHHHHhhccceEEEec
Q 041690 168 NSTRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~i~~~ 189 (233)
..|.+...+.++++.++.+...
T Consensus 166 ~~p~~g~~~~~~~d~~i~l~~~ 187 (218)
T cd01394 166 VRPLGGHTLEHWSKVILRLEKL 187 (218)
T ss_pred ccccCCcchhcceeEEEEEEEc
Confidence 2244445689999999999975
No 18
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=99.68 E-value=2.4e-15 Score=129.50 Aligned_cols=189 Identities=11% Similarity=0.079 Sum_probs=110.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEecCCccccccccccccc---C-CchhhhcceEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCNRSRLQSKRPYLSQSI---D-PSSHVFKLIQMKYVE 87 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~e~~l~~~~~~~~~~~---~-~~~~~~~~i~~~~~~ 87 (233)
++|.+++|+|+||+|||+||.+++...... .+.+|+||++|+.|.. +++.++. + +.+..++++......
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~--eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRP--QRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccH--HHHHHHHHHcCCChhhhccceEEEecC
Confidence 689999999999999999999999765521 2358999999975532 3333322 1 233455566554433
Q ss_pred CHHHHHHHHHHhc--ccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhc-CCcEEEEeec
Q 041690 88 DDEEIKKYFAAFH--QHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKK-SPCKLLLSDT 164 (233)
Q Consensus 88 ~~~~l~~~~~~~~--~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~vlvi~~~ 164 (233)
..+.+..++..+. .....+++|||||++++++.... .... ....+..|..++..+..+... +.+++++.+.
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~-----~~g~-l~~r~~~L~~~l~~L~~lA~~~~vaVviTNqv 272 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFS-----GRGE-LSARQMHLGKFLRSLQRLADEFGVAVVITNQV 272 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhc-----CCcc-HHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCE
Confidence 3443333333221 11345999999999999874211 1111 111222344555555555544 5555555433
Q ss_pred C-CC----------CCchhHHHHHHhhccceEEEec--CCccEEEeeccCcccccccccceeeeEEee
Q 041690 165 H-LG----------NSTRLLYIYKRWISSIFTVKGD--GPGSFLLRNKNYSRSCGLGKTRIAKYSIAL 219 (233)
Q Consensus 165 ~-~~----------~~~~~~~~~~~~~~~~~~i~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 219 (233)
. .. -.|.+..++.|+++..+.+.+. +.+...+.++...+ . ..|.|.|.-
T Consensus 273 ~~~~~~~~~~~~~~~~P~gG~~~~h~~~tRl~L~k~~~~~R~~~v~ksp~~p-----~-~e~~F~I~~ 334 (342)
T PLN03186 273 VAQVDGSAFFAGPQLKPIGGNIMAHASTTRLALRKGRGENRICKVISSPCLP-----E-AEARFSISS 334 (342)
T ss_pred EEccCCccccCCCccccchhHHHHhhccEEEEEEecCCCeEEEEEEECCCCC-----C-eEEEEEEEC
Confidence 1 11 1566788999999999999963 22334444443332 1 236676543
No 19
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.66 E-value=1.1e-16 Score=136.68 Aligned_cols=151 Identities=11% Similarity=-0.001 Sum_probs=98.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKY 95 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 95 (233)
..++.+++|+||||||||.+|+.+|. +.|..++.++ ..+..+.+.+++ +..++++
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~----elg~~~i~vs-------a~eL~sk~vGEs--------------Ek~IR~~ 199 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFK----KMGIEPIVMS-------AGELESENAGEP--------------GKLIRQR 199 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHH----HcCCCeEEEE-------HHHhhcCcCCcH--------------HHHHHHH
Confidence 46889999999999999999997776 4456677774 445555555554 7789999
Q ss_pred HHHhccc---CCCCcEEEEeCCCccccccccccccCCcchhhHHHH-HHHHHHHHHHH--------HhhhcCCcEEEEee
Q 041690 96 FAAFHQH---DKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMV-RTLALCYNAIT--------HANKKSPCKLLLSD 163 (233)
Q Consensus 96 ~~~~~~~---~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~--------~l~~~~~~vlvi~~ 163 (233)
|..+... ...|++||||||++++.. +++.......+++ .+|+.++|... +.......|+||++
T Consensus 200 F~~A~~~a~~~~aPcVLFIDEIDA~~g~-----r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaT 274 (413)
T PLN00020 200 YREAADIIKKKGKMSCLFINDLDAGAGR-----FGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVT 274 (413)
T ss_pred HHHHHHHhhccCCCeEEEEehhhhcCCC-----CCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEe
Confidence 9877532 345999999999999984 3322222223333 56666655321 12234556888999
Q ss_pred cCCCCCchhHHHHHHhhccceEEEecCCccEEE
Q 041690 164 THLGNSTRLLYIYKRWISSIFTVKGDGPGSFLL 196 (233)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 196 (233)
+|.++......+...+++..+.++...++.-++
T Consensus 275 TNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL 307 (413)
T PLN00020 275 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVV 307 (413)
T ss_pred CCCcccCCHhHcCCCCCCceeCCCCHHHHHHHH
Confidence 998875544434444788777655434333333
No 20
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=99.66 E-value=6.2e-15 Score=126.17 Aligned_cols=178 Identities=13% Similarity=0.077 Sum_probs=102.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEecCCccccccccccccc---C-CchhhhcceEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCNRSRLQSKRPYLSQSI---D-PSSHVFKLIQMKYVE 87 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~e~~l~~~~~~~~~~~---~-~~~~~~~~i~~~~~~ 87 (233)
+.|++++|+||||||||+||.|++.+++.. .+.+++||++|+.|.. +++.+.. + ......+++.+....
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~--~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRP--ERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCH--HHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 589999999999999999999999887631 2348999999975432 2222221 1 122234455553332
Q ss_pred CHHH----HHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHH-HhhhcCCcEEEEe
Q 041690 88 DDEE----IKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAIT-HANKKSPCKLLLS 162 (233)
Q Consensus 88 ~~~~----l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~l~~~~~~vlvi~ 162 (233)
..+. +..+...+......+++|||||++++++.... .. +......+.+..++..+. .+++.+.+++++.
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~-----~~-~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYV-----GR-GALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhc-----Cc-hhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 2221 22222222221213789999999999874211 11 111111122333333333 3345566666665
Q ss_pred ecCC--------CCCchhHHHHHHhhccceEEEec--CCccEEEeeccCc
Q 041690 163 DTHL--------GNSTRLLYIYKRWISSIFTVKGD--GPGSFLLRNKNYS 202 (233)
Q Consensus 163 ~~~~--------~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~l~~~~~~ 202 (233)
+... +..|.+..++.|+++.++.+... +.+...+.++.+.
T Consensus 245 qv~~~~~~~~~~~~~~~~G~~~~h~~~~rl~l~~~~~~~R~~~~~k~~~~ 294 (310)
T TIGR02236 245 QVMARPDAFFGDPTRPIGGHILGHAATFRVYLRKGKGDKRIARLVDSPHL 294 (310)
T ss_pred eeeecCccccCccccCCcchhhhhheeEEEEEEecCCCeEEEEEEECCCC
Confidence 4321 12566778999999999999973 3344556665544
No 21
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.1e-16 Score=127.47 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=104.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccc-cCCchhhhcceEEEEecCHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQS-IDPSSHVFKLIQMKYVEDDEEIKKY 95 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~l~~~ 95 (233)
.|+.++|+|||||+|||.+|++-|. +....++-+ ..+.+.|+ .++. ...++..
T Consensus 203 ~pPKGvLmYGPPGTGKTlmARAcAa----qT~aTFLKL--------AgPQLVQMfIGdG--------------AkLVRDA 256 (424)
T KOG0652|consen 203 RPPKGVLMYGPPGTGKTLMARACAA----QTNATFLKL--------AGPQLVQMFIGDG--------------AKLVRDA 256 (424)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHH----hccchHHHh--------cchHHHhhhhcch--------------HHHHHHH
Confidence 5889999999999999999994332 333222222 12222222 2222 6688999
Q ss_pred HHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHH
Q 041690 96 FAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYI 175 (233)
Q Consensus 96 ~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~ 175 (233)
|+.+. +..|++|||||++++-. +|.++....++..+++++++++.+..+.+ ...+-+++++|+.+......+
T Consensus 257 FaLAK--EkaP~IIFIDElDAIGt-----KRfDSek~GDREVQRTMLELLNQLDGFss-~~~vKviAATNRvDiLDPALl 328 (424)
T KOG0652|consen 257 FALAK--EKAPTIIFIDELDAIGT-----KRFDSEKAGDREVQRTMLELLNQLDGFSS-DDRVKVIAATNRVDILDPALL 328 (424)
T ss_pred HHHhh--ccCCeEEEEechhhhcc-----ccccccccccHHHHHHHHHHHHhhcCCCC-ccceEEEeecccccccCHHHh
Confidence 99887 56699999999999988 56666666777889999999998876644 456778899998877666667
Q ss_pred HHHhhccceEEEec-CCccEEEe
Q 041690 176 YKRWISSIFTVKGD-GPGSFLLR 197 (233)
Q Consensus 176 ~~~~~~~~~~i~~~-~~~~~~l~ 197 (233)
...++++.+.++.. ...+.++.
T Consensus 329 RSGRLDRKIEfP~Pne~aRarIl 351 (424)
T KOG0652|consen 329 RSGRLDRKIEFPHPNEEARARIL 351 (424)
T ss_pred hcccccccccCCCCChHHHHHHH
Confidence 78889998888863 33333333
No 22
>PTZ00035 Rad51 protein; Provisional
Probab=99.65 E-value=7.2e-15 Score=126.67 Aligned_cols=165 Identities=13% Similarity=0.119 Sum_probs=99.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEecCCcccccccccccc---cC-CchhhhcceEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCNRSRLQSKRPYLSQS---ID-PSSHVFKLIQMKYVE 87 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~e~~l~~~~~~~~~~---~~-~~~~~~~~i~~~~~~ 87 (233)
++|++++|+||||||||+|+++++...... .+.+++||++|+.+.. +++.+. .+ ..+.+++++.+....
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~--eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRP--ERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCH--HHHHHHHHHhCCChHhHhhceEEEccC
Confidence 689999999999999999999998766521 4678999999975432 222221 11 233455676654444
Q ss_pred CHHHHHHHHHHhc--ccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhh-cCCcEEEEeec
Q 041690 88 DDEEIKKYFAAFH--QHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANK-KSPCKLLLSDT 164 (233)
Q Consensus 88 ~~~~l~~~~~~~~--~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~-~~~~vlvi~~~ 164 (233)
..+.+..++..+. ..+..+++|||||++++++....+ . ......++.+..++..+..+.+ .+.+++++.+.
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~-----~-~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv 267 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG-----R-GELAERQQHLGKFLRALQKLADEFNVAVVITNQV 267 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC-----c-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecce
Confidence 4333333332211 113458999999999988742110 1 0111122334445555555444 45555554432
Q ss_pred C-C----------CCCchhHHHHHHhhccceEEEec
Q 041690 165 H-L----------GNSTRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 165 ~-~----------~~~~~~~~~~~~~~~~~~~i~~~ 189 (233)
. . +..|.+..++.|+....+.+...
T Consensus 268 ~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~ 303 (337)
T PTZ00035 268 MADVDGASMFVADPKKPIGGHIIAHASTTRLSLRKG 303 (337)
T ss_pred EEecCCccccCCCCccCCchHHHHhheeEEEEEEec
Confidence 2 1 12356778999999999999974
No 23
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=99.64 E-value=1.9e-14 Score=123.02 Aligned_cols=189 Identities=11% Similarity=0.082 Sum_probs=109.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc--C---CCeEEEEecCCccccccccccc---ccC-CchhhhcceEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ--S---NANVVFMCNRSRLQSKRPYLSQ---SID-PSSHVFKLIQMKYVE 87 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~--~---g~~v~yi~~e~~l~~~~~~~~~---~~~-~~~~~~~~i~~~~~~ 87 (233)
++|.+++|+||||+|||+|+++++..+... . +.+++||++|+.+... ++.+ ..+ ..+.+.+++.+....
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~--Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPE--RLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHH--HHHHHHHHcCCChHHhhccEEEEecC
Confidence 689999999999999999999998754421 2 2589999999754322 2211 111 233455566553333
Q ss_pred CHHHHHHHHHHhc--ccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhh-cCCcEEEEeec
Q 041690 88 DDEEIKKYFAAFH--QHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANK-KSPCKLLLSDT 164 (233)
Q Consensus 88 ~~~~l~~~~~~~~--~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~-~~~~vlvi~~~ 164 (233)
..+.+..++..+. .....+++|||||++++++.... .. ......+..|..++..+..+.+ .+.+++++.+.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~-----~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNqv 245 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFS-----GR-GELSARQMHLARFLRSLQRLADEFGVAVVITNQV 245 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcC-----Cc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEECce
Confidence 3333333333221 11345899999999999874211 11 1111122334445555555544 45555555443
Q ss_pred C---C---------CCCchhHHHHHHhhccceEEEec--CCccEEEeeccCcccccccccceeeeEEee
Q 041690 165 H---L---------GNSTRLLYIYKRWISSIFTVKGD--GPGSFLLRNKNYSRSCGLGKTRIAKYSIAL 219 (233)
Q Consensus 165 ~---~---------~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 219 (233)
. . +..|.+...+.|+++.++.+.+. +.|...+.++.+.+ ...|.|.|.-
T Consensus 246 ~~~~~~~~~~~~g~~~~p~gG~~~~h~~~~ri~l~k~~~~~R~~~v~ksp~~p------~~~~~f~i~~ 308 (316)
T TIGR02239 246 VAQVDGAGSMFAGDPKKPIGGNIMAHASTTRLSLRKGRGEQRICKIYDSPCLP------ESEAMFAIYE 308 (316)
T ss_pred EEecCCccccccCCCCcCCchHHHHhhccEEEEEEecCCCeEEEEEEECCCCC------CeEEEEEEeC
Confidence 2 1 12456678999999999999974 23445555554443 1236676643
No 24
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.6e-14 Score=120.58 Aligned_cols=185 Identities=16% Similarity=0.147 Sum_probs=119.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
+.|.++.||||+|||||++|+|++.++. ..|.+++|||+|+.|...+ +.+..... .+++.+......+....+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq-~~g~~a~fIDtE~~l~p~r--~~~l~~~~---~d~l~v~~~~~~e~q~~i~ 131 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQ-KPGGKAAFIDTEHALDPER--AKQLGVDL---LDNLLVSQPDTGEQQLEIA 131 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhh-cCCCeEEEEeCCCCCCHHH--HHHHHHhh---hcceeEecCCCHHHHHHHH
Confidence 6899999999999999999999999888 7788999999997654432 33222110 3455554444444444444
Q ss_pred HHhcc-cCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecC---------C
Q 041690 97 AAFHQ-HDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTH---------L 166 (233)
Q Consensus 97 ~~~~~-~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~---------~ 166 (233)
..+.. ....+++||||+++++++....+ +......++.+...+..+..+..+..+.++++++- .
T Consensus 132 ~~~~~~~~~~i~LvVVDSvaa~~r~~~~~------d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~~ 205 (279)
T COG0468 132 EKLARSGAEKIDLLVVDSVAALVRAEEIE------DGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFGD 205 (279)
T ss_pred HHHHHhccCCCCEEEEecCcccchhhhcC------cchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCcccCC
Confidence 33321 12248999999999999964221 12223334455555555665556666666766652 2
Q ss_pred CCCchhHHHHHHhhccceEEEecC--------CccEEEeeccCcccccccccceeeeEEe
Q 041690 167 GNSTRLLYIYKRWISSIFTVKGDG--------PGSFLLRNKNYSRSCGLGKTRIAKYSIA 218 (233)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 218 (233)
+..|-+..++.||....+.+...+ .+...+.++... ..-+.|.|.|.
T Consensus 206 ~~~~~GG~~L~~~as~rl~l~k~~~~~~~~g~~r~~~vvk~~~~-----p~~~~a~f~I~ 260 (279)
T COG0468 206 PETTTGGNALKFYASVRLDLRRIESLKEDVGNKRRVKVVKNKVA-----PPFKEAEFDIT 260 (279)
T ss_pred cccCCCchHHHhhhheEEEEeeccccccccCCeEEEEEEeCCCC-----CCCceeEEEee
Confidence 455667889999999999998762 333555554443 33456677663
No 25
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=99.64 E-value=1e-14 Score=124.28 Aligned_cols=163 Identities=14% Similarity=0.167 Sum_probs=97.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKY 95 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 95 (233)
.++|++++|+|||||||||||.+++.+.+ ..|.+++||++|+.+... +.. .++.. .+++.+......+.....
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~-~~g~~~vyId~E~~~~~~--~a~-~lGvd---~~~l~v~~p~~~eq~l~i 124 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQ-KLGGTVAFIDAEHALDPV--YAK-KLGVD---LDNLLISQPDTGEQALEI 124 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEECccccHHHH--HHH-HcCCC---HHHheecCCCCHHHHHHH
Confidence 36899999999999999999999999888 678999999998755432 111 11111 124444334444444444
Q ss_pred HHHhcccCCCCcEEEEeCCCccccccccccccCCcc-hhhHHHHHHHHH-HHHHHHHhhhcCCcEEEEeecC--------
Q 041690 96 FAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPR-GRDLAMVRTLAL-CYNAITHANKKSPCKLLLSDTH-------- 165 (233)
Q Consensus 96 ~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~-l~~~~~~l~~~~~~vlvi~~~~-------- 165 (233)
...+.. ...+++|||||++++++...-+.+.++.. .... +.+.. +..+...+++.+.+++++.+..
T Consensus 125 ~~~li~-s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qa---R~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~~~g 200 (325)
T cd00983 125 ADSLVR-SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQA---RLMSQALRKLTGSINKSNTTVIFINQLREKIGVMFG 200 (325)
T ss_pred HHHHHh-ccCCCEEEEcchHhhcccccccccccccchHHHH---HHHHHHHHHHHHHHHhCCCEEEEEEccccccccccC
Confidence 433321 33499999999999996311111111111 1111 11222 2333444455566666655432
Q ss_pred CCCCchhHHHHHHhhccceEEEec
Q 041690 166 LGNSTRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~i~~~ 189 (233)
.+..+.+..++.+|....+.+...
T Consensus 201 ~~e~~~GG~~L~~~ss~rl~lrk~ 224 (325)
T cd00983 201 NPETTTGGNALKFYSSVRLDIRRI 224 (325)
T ss_pred CCccCCCchHHhhhcceEEEEEee
Confidence 223555677899999999998863
No 26
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=99.64 E-value=1.7e-14 Score=123.85 Aligned_cols=177 Identities=12% Similarity=0.067 Sum_probs=102.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEecCCccccccccccccc---C-CchhhhcceEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCNRSRLQSKRPYLSQSI---D-PSSHVFKLIQMKYVE 87 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~e~~l~~~~~~~~~~~---~-~~~~~~~~i~~~~~~ 87 (233)
++|.+++|+||||||||+||.|++..++.. .+.+++||++|+.+. ++++.+.. + +.+..++++.+....
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~--~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFR--PERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcC--HHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 589999999999999999999999887632 135899999987443 22232221 1 223445566554333
Q ss_pred CHHHHHHHHHHhcc--cC-CCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHH-HhhhcCCcEEEEee
Q 041690 88 DDEEIKKYFAAFHQ--HD-KIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAIT-HANKKSPCKLLLSD 163 (233)
Q Consensus 88 ~~~~l~~~~~~~~~--~~-~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~l~~~~~~vlvi~~ 163 (233)
.......++..+.. .+ ..+++|||||++++++.... ..... ....+.+..++..+. .+++.+.+++++.+
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~-----~~~~~-~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYV-----GRGNL-AERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhcc-----CCccH-HHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 32222222222111 12 35899999999999874211 11011 111222333333333 34556777777665
Q ss_pred cCC--------CCCchhHHHHHHhhccceEEEec--CCccEEEeeccC
Q 041690 164 THL--------GNSTRLLYIYKRWISSIFTVKGD--GPGSFLLRNKNY 201 (233)
Q Consensus 164 ~~~--------~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~l~~~~~ 201 (233)
... +..|.+..++.|++.+.+.+.+. +.+...+.++.+
T Consensus 252 v~~~~~~~~~~~~~~~~G~~~~~~~~~rl~l~k~~~~~R~~~v~k~~~ 299 (317)
T PRK04301 252 VMARPDAFFGDPTQPIGGHILGHTATFRIYLRKSKGNKRIARLVDSPH 299 (317)
T ss_pred EEeccccccCccccCCcchHhHhheeEEEEEEecCCCceEEEEEeCCC
Confidence 321 12466677899999999999974 333444444443
No 27
>PRK09354 recA recombinase A; Provisional
Probab=99.64 E-value=1.3e-14 Score=124.47 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=99.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKY 95 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 95 (233)
.++|++++|+|||||||||||.+++.+.+ ..|.+++||++|+.+... +.. .++.. .+++.+......+.....
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~-~~G~~~~yId~E~s~~~~--~a~-~lGvd---ld~lli~qp~~~Eq~l~i 129 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALDPV--YAK-KLGVD---IDNLLVSQPDTGEQALEI 129 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEECCccchHHH--HHH-HcCCC---HHHeEEecCCCHHHHHHH
Confidence 36899999999999999999999999888 679999999999755432 111 11111 124444333334444444
Q ss_pred HHHhcccCCCCcEEEEeCCCccccc-cccccccCCcchhhHHHHHHHHH-HHHHHHHhhhcCCcEEEEeecC--------
Q 041690 96 FAAFHQHDKIPTAVVVDDFGDLFDD-RTCQERYTNPRGRDLAMVRTLAL-CYNAITHANKKSPCKLLLSDTH-------- 165 (233)
Q Consensus 96 ~~~~~~~~~~p~iIvIDei~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~l~~~~~~vlvi~~~~-------- 165 (233)
...+.. ...+++|||||++++++. ...+.-++.......+ .+.. +..+...+++.+.+++++....
T Consensus 130 ~~~li~-s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar---~ms~~Lr~L~~~l~k~~itvI~tNQvr~~ig~~~g 205 (349)
T PRK09354 130 ADTLVR-SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQAR---LMSQALRKLTGNISKSNTTVIFINQIREKIGVMFG 205 (349)
T ss_pred HHHHhh-cCCCCEEEEeChhhhcchhhhcCCccccchhHHHH---HHHHHHHHHHHHHHHcCcEEEEEEeeeeccccccC
Confidence 433221 345999999999999862 1111101111111111 1211 3344445566677777765432
Q ss_pred CCCCchhHHHHHHhhccceEEEec
Q 041690 166 LGNSTRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~i~~~ 189 (233)
.+..+.+...+.||....+++...
T Consensus 206 ~pe~~~GG~aL~~~ss~rl~lrr~ 229 (349)
T PRK09354 206 NPETTTGGNALKFYASVRLDIRRI 229 (349)
T ss_pred CCCcCCCchhhHhhheeeeEEecc
Confidence 134566777899999999998863
No 28
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.63 E-value=6.9e-15 Score=128.14 Aligned_cols=164 Identities=13% Similarity=0.259 Sum_probs=97.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+|+.++|+|+||+|||||+.|++...+ ..+.+++|++.|+....-..+.. .++. ..+++.+. ....+..++
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a-~~g~~VlYvs~EEs~~qi~~Ra~-rlg~---~~~~l~l~---~e~~le~I~ 151 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLA-KRGGKVLYVSGEESPEQIKLRAD-RLGI---STENLYLL---AETNLEDIL 151 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEEECCcCHHHHHHHHH-HcCC---CcccEEEE---ccCcHHHHH
Confidence 5899999999999999999999999888 66789999998743221111100 0110 01133222 122333344
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
+.+. ...|++|||||++.++...... ..... ...+.+ +..+.+.+++.+.+++++++.+......+...+
T Consensus 152 ~~i~--~~~~~lVVIDSIq~l~~~~~~~----~~g~~--~qvr~~--~~~L~~lak~~~itvilvghvtk~g~~aG~~~l 221 (372)
T cd01121 152 ASIE--ELKPDLVIIDSIQTVYSSELTS----APGSV--SQVREC--TAELMRFAKERNIPIFIVGHVTKEGSIAGPKVL 221 (372)
T ss_pred HHHH--hcCCcEEEEcchHHhhcccccc----CCCCH--HHHHHH--HHHHHHHHHHcCCeEEEEeeccCCCcccCcccc
Confidence 4333 3349999999999987631100 11111 111111 222344456778888888876653322333489
Q ss_pred HHhhccceEEEecCCccEEEee
Q 041690 177 KRWISSIFTVKGDGPGSFLLRN 198 (233)
Q Consensus 177 ~~~~~~~~~i~~~~~~~~~l~~ 198 (233)
+|++|.++.++......+++.+
T Consensus 222 eh~vD~Vi~le~~~~~~~R~Lr 243 (372)
T cd01121 222 EHMVDTVLYFEGDRHSEYRILR 243 (372)
T ss_pred hhhceEEEEEEcCCCCcEEEEE
Confidence 9999999999986543455443
No 29
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.63 E-value=1.1e-14 Score=130.13 Aligned_cols=164 Identities=14% Similarity=0.257 Sum_probs=97.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+|+.++|+||||+|||||+.|++...+ ..+.+++|++.|+....-..+.. .++.. .+++.+.. ...+..++
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g~~vlYvs~Ees~~qi~~ra~-rlg~~---~~~l~~~~---e~~l~~i~ 149 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLA-AAGGKVLYVSGEESASQIKLRAE-RLGLP---SDNLYLLA---ETNLEAIL 149 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEccccHHHHHHHHH-HcCCC---hhcEEEeC---CCCHHHHH
Confidence 5899999999999999999999999888 66889999998753322111111 01110 11232221 12233344
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. +..|++|||||+++++.....+ ... .. ...+.+ +..+...+++.+.+++++++.+......+...+
T Consensus 150 ~~i~--~~~~~lVVIDSIq~l~~~~~~~----~~g-~~-~qvr~~--~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~l 219 (446)
T PRK11823 150 ATIE--EEKPDLVVIDSIQTMYSPELES----APG-SV-SQVREC--AAELMRLAKQRGIAVFLVGHVTKEGAIAGPRVL 219 (446)
T ss_pred HHHH--hhCCCEEEEechhhhccccccC----CCC-CH-HHHHHH--HHHHHHHHHHcCCEEEEEeeccCCCCcCCcchh
Confidence 4333 3349999999999998742110 011 11 111111 223344456778888888877654322233479
Q ss_pred HHhhccceEEEecCCccEEEee
Q 041690 177 KRWISSIFTVKGDGPGSFLLRN 198 (233)
Q Consensus 177 ~~~~~~~~~i~~~~~~~~~l~~ 198 (233)
+|++|.+++++......++.-+
T Consensus 220 ehlvD~Vi~le~~~~~~~R~l~ 241 (446)
T PRK11823 220 EHMVDTVLYFEGDRHSRYRILR 241 (446)
T ss_pred hhhCeEEEEEEcCCCCceEEEE
Confidence 9999999999864344455443
No 30
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.4e-15 Score=136.02 Aligned_cols=136 Identities=20% Similarity=0.253 Sum_probs=107.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
+-..++|+|||||||||.|+-+++. ..+-+++-| ..++.+....+.+ ++.++.+|
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~----~~~~~fisv-------KGPElL~KyIGaS--------------Eq~vR~lF 753 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIAS----NSNLRFISV-------KGPELLSKYIGAS--------------EQNVRDLF 753 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHh----hCCeeEEEe-------cCHHHHHHHhccc--------------HHHHHHHH
Confidence 5678899999999999999997765 333445544 4566676666554 78999999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+... +||++|+||++++.+ +|+-++.+-..+.+++|+..++....+ ..|.++++|++++..+...+.
T Consensus 754 ~rA~~a--~PCiLFFDEfdSiAP-----kRGhDsTGVTDRVVNQlLTelDG~Egl----~GV~i~aaTsRpdliDpALLR 822 (952)
T KOG0735|consen 754 ERAQSA--KPCILFFDEFDSIAP-----KRGHDSTGVTDRVVNQLLTELDGAEGL----DGVYILAATSRPDLIDPALLR 822 (952)
T ss_pred HHhhcc--CCeEEEeccccccCc-----ccCCCCCCchHHHHHHHHHhhcccccc----ceEEEEEecCCccccCHhhcC
Confidence 988743 499999999999999 677778888889999999999988543 468899999999877777677
Q ss_pred HHhhccceEEEe
Q 041690 177 KRWISSIFTVKG 188 (233)
Q Consensus 177 ~~~~~~~~~i~~ 188 (233)
..++|..+.-+.
T Consensus 823 pGRlD~~v~C~~ 834 (952)
T KOG0735|consen 823 PGRLDKLVYCPL 834 (952)
T ss_pred CCccceeeeCCC
Confidence 788887766554
No 31
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3e-15 Score=135.76 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=101.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+..++|++||||||||.||+.++. ..+.+++-+. .. +.++++++.+ ...++++|
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~----~~~~~fi~v~------~~-~l~sk~vGes--------------ek~ir~~F 328 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL----ESRSRFISVK------GS-ELLSKWVGES--------------EKNIRELF 328 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh----hCCCeEEEee------CH-HHhccccchH--------------HHHHHHHH
Confidence 4667999999999999999996665 5556676664 32 5566665554 78999999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||+++++.. |++.......+++++++..++.+ +....|+|++++|.++........
T Consensus 329 ~~A~--~~~p~iiFiDEiDs~~~~-----r~~~~~~~~~r~~~~lL~~~d~~----e~~~~v~vi~aTN~p~~ld~a~lR 397 (494)
T COG0464 329 EKAR--KLAPSIIFIDEIDSLASG-----RGPSEDGSGRRVVGQLLTELDGI----EKAEGVLVIAATNRPDDLDPALLR 397 (494)
T ss_pred HHHH--cCCCcEEEEEchhhhhcc-----CCCCCchHHHHHHHHHHHHhcCC----CccCceEEEecCCCccccCHhhcc
Confidence 9887 445999999999999994 44344434456777877777766 444568899999988765543333
Q ss_pred HHhhccceEEEecC
Q 041690 177 KRWISSIFTVKGDG 190 (233)
Q Consensus 177 ~~~~~~~~~i~~~~ 190 (233)
..+|+.+++++..+
T Consensus 398 ~gRfd~~i~v~~pd 411 (494)
T COG0464 398 PGRFDRLIYVPLPD 411 (494)
T ss_pred cCccceEeecCCCC
Confidence 34889999998753
No 32
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.61 E-value=1.1e-14 Score=121.57 Aligned_cols=155 Identities=14% Similarity=0.160 Sum_probs=90.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccc-----ccccCCchhhhcceEEEEecCH--
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYL-----SQSIDPSSHVFKLIQMKYVEDD-- 89 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~-- 89 (233)
++|+.++|+||||||||+||.|++.+.+ ..|.+++|++.|+........+ ..++ +.+...+++.+......
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a-~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~-d~~~~~~~l~~id~~~~~~ 111 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA-SRGNPVLFVTVESPANFVYTSLKERAKAMGV-DFDKIEENIILIDAASSTE 111 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH-hCCCcEEEEEecCCchHHHHHHHHHHHHcCC-CHHHHhCCEEEEECCCchh
Confidence 6999999999999999999999999988 6699999999773211101111 1111 11223334444222111
Q ss_pred --HHHHHHHHHhcc--cCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecC
Q 041690 90 --EEIKKYFAAFHQ--HDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTH 165 (233)
Q Consensus 90 --~~l~~~~~~~~~--~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~ 165 (233)
..+..++..+.. .+..+++||||++++++... . ...+ +. +..+...+++.+.+++++++..
T Consensus 112 ~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~---------~-~~~r--~~---~~~L~~~lk~~~~t~ll~~e~~ 176 (259)
T TIGR03878 112 LRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEAK---------E-MMAR--EI---VRQLFNFMKKWYQTALFVSQKR 176 (259)
T ss_pred hhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhcccc---------h-HHHH--HH---HHHHHHHHHHcCCeEEEEeccc
Confidence 223333332211 13459999999999987621 0 1111 11 3334555667788898887643
Q ss_pred CCC-----CchhHHHHHHhhccceEEEe
Q 041690 166 LGN-----STRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 166 ~~~-----~~~~~~~~~~~~~~~~~i~~ 188 (233)
.+. .+.+...+.+.+|.++.+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~l~D~vI~L~~ 204 (259)
T TIGR03878 177 SGHEELSAEAAGGYAVSHIVDGTIVLAK 204 (259)
T ss_pred cCcccccccccCCcceeEeeccEEEEee
Confidence 211 22223356888888888773
No 33
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.2e-16 Score=130.87 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=96.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+..++|++||||||||.+|+.++. +.|..++-|+ .......|++++ .+.+..+|
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Ak----eaga~fInv~-------~s~lt~KWfgE~--------------eKlv~AvF 179 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAK----EAGANFINVS-------VSNLTSKWFGEA--------------QKLVKAVF 179 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHH----HcCCCcceee-------ccccchhhHHHH--------------HHHHHHHH
Confidence 5888999999999999999996665 5566666553 111222344333 66777788
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+... .|++|||||+++++. .|....++....+.+++..+++.+. ...+..|+|+++||+|..... +.
T Consensus 180 slAsKl--~P~iIFIDEvds~L~-----~R~s~dHEa~a~mK~eFM~~WDGl~--s~~~~rVlVlgATNRP~DlDe--Ai 248 (386)
T KOG0737|consen 180 SLASKL--QPSIIFIDEVDSFLG-----QRRSTDHEATAMMKNEFMALWDGLS--SKDSERVLVLGATNRPFDLDE--AI 248 (386)
T ss_pred hhhhhc--CcceeehhhHHHHHh-----hcccchHHHHHHHHHHHHHHhcccc--CCCCceEEEEeCCCCCccHHH--HH
Confidence 877633 499999999999998 4433444455556677777777763 233557999999999865432 56
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
-|++++.++|.-+
T Consensus 249 iRR~p~rf~V~lP 261 (386)
T KOG0737|consen 249 IRRLPRRFHVGLP 261 (386)
T ss_pred HHhCcceeeeCCC
Confidence 6677889988753
No 34
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.9e-15 Score=120.39 Aligned_cols=139 Identities=16% Similarity=0.185 Sum_probs=96.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.|+.++|+|||||+|||.+|+++|. +.+.-++-+ -..+.+....++. ...++++|
T Consensus 209 dppkgvllygppgtgktl~aravan----rtdacfirv-------igselvqkyvgeg--------------armvrelf 263 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVAN----RTDACFIRV-------IGSELVQKYVGEG--------------ARMVRELF 263 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhc----ccCceEEee-------hhHHHHHHHhhhh--------------HHHHHHHH
Confidence 5889999999999999999995543 444333333 1122222222221 56889999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
+.++ ....|+||+||++++-. .|.++..+.+...+++++++++.+.-+..+|..- |+.++|+++......+.
T Consensus 264 ~mar--tkkaciiffdeidaigg-----arfddg~ggdnevqrtmleli~qldgfdprgnik-vlmatnrpdtldpallr 335 (435)
T KOG0729|consen 264 EMAR--TKKACIIFFDEIDAIGG-----ARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK-VLMATNRPDTLDPALLR 335 (435)
T ss_pred HHhc--ccceEEEEeeccccccC-----ccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeE-EEeecCCCCCcCHhhcC
Confidence 9887 44489999999999987 5666666777888999999999888776666544 44456777655555566
Q ss_pred HHhhccceEEEe
Q 041690 177 KRWISSIFTVKG 188 (233)
Q Consensus 177 ~~~~~~~~~i~~ 188 (233)
..++++.+++.-
T Consensus 336 pgrldrkvef~l 347 (435)
T KOG0729|consen 336 PGRLDRKVEFGL 347 (435)
T ss_pred CcccccceeccC
Confidence 677777666553
No 35
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.61 E-value=8.7e-15 Score=130.78 Aligned_cols=164 Identities=16% Similarity=0.228 Sum_probs=96.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+|+.++|+|+||+|||||+.|++...+ ..+.+++|++.|+....-..+.. .++. ..+++.+.... .+..+.
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a-~~g~kvlYvs~EEs~~qi~~ra~-rlg~---~~~~l~~~~e~---~~~~I~ 163 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLA-KNQMKVLYVSGEESLQQIKMRAI-RLGL---PEPNLYVLSET---NWEQIC 163 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH-hcCCcEEEEECcCCHHHHHHHHH-HcCC---ChHHeEEcCCC---CHHHHH
Confidence 5899999999999999999999999888 66789999998753322111100 0110 11133322112 223333
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. +..|++||||++++++.....+.. ..... .+.. +..+.+.+++.+.+++++++........+...+
T Consensus 164 ~~i~--~~~~~~vVIDSIq~l~~~~~~~~~---g~~~q---~r~~--~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~l 233 (454)
T TIGR00416 164 ANIE--EENPQACVIDSIQTLYSPDISSAP---GSVSQ---VREC--TAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVL 233 (454)
T ss_pred HHHH--hcCCcEEEEecchhhcccccccCC---CCHHH---HHHH--HHHHHHHHHHhCCEEEEEeccccCCccCCcccE
Confidence 3333 334999999999998763110000 11111 1111 223334456778888888876543222222378
Q ss_pred HHhhccceEEEecCCccEEEee
Q 041690 177 KRWISSIFTVKGDGPGSFLLRN 198 (233)
Q Consensus 177 ~~~~~~~~~i~~~~~~~~~l~~ 198 (233)
+|++|.++.++......++..+
T Consensus 234 e~lvD~VI~Le~~~~~~~R~L~ 255 (454)
T TIGR00416 234 EHMVDTVLYFEGDRDSRFRILR 255 (454)
T ss_pred eeeceEEEEEeccCCCcEEEEE
Confidence 9999999999875444444444
No 36
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.2e-15 Score=123.23 Aligned_cols=140 Identities=18% Similarity=0.187 Sum_probs=101.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++.+++||||||+|||.+|+.++. .-|...+.++ +.+......+++ ...+++.|
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa----~mg~nfl~v~-------ss~lv~kyiGEs--------------aRlIRemf 218 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAA----TMGVNFLKVV-------SSALVDKYIGES--------------ARLIRDMF 218 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHH----hcCCceEEee-------HhhhhhhhcccH--------------HHHHHHHH
Confidence 5788999999999999999997765 4556666663 223333333333 77899999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. +..||+||+|||++.... +.+.....+..++++|.++.+.+......+ .|=+|.++|+++......+.
T Consensus 219 ~yA~--~~~pciifmdeiDAigGR-----r~se~Ts~dreiqrTLMeLlnqmdgfd~l~-rVk~ImatNrpdtLdpaLlR 290 (388)
T KOG0651|consen 219 RYAR--EVIPCIIFMDEIDAIGGR-----RFSEGTSSDREIQRTLMELLNQMDGFDTLH-RVKTIMATNRPDTLDPALLR 290 (388)
T ss_pred HHHh--hhCceEEeehhhhhhccE-----EeccccchhHHHHHHHHHHHHhhccchhcc-cccEEEecCCccccchhhcC
Confidence 9887 444999999999999873 333445566678889888888776554443 45567778877765556677
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
+.+++.-++++-.
T Consensus 291 pGRldrk~~iPlp 303 (388)
T KOG0651|consen 291 PGRLDRKVEIPLP 303 (388)
T ss_pred CccccceeccCCc
Confidence 8889998888853
No 37
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.60 E-value=4.7e-14 Score=115.21 Aligned_cols=166 Identities=15% Similarity=0.122 Sum_probs=103.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC------CeEEEEecCCccccccccccccc---C-CchhhhcceEEEE
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSN------ANVVFMCNRSRLQSKRPYLSQSI---D-PSSHVFKLIQMKY 85 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g------~~v~yi~~e~~l~~~~~~~~~~~---~-~~~~~~~~i~~~~ 85 (233)
.++|.+++|+||||||||+|+.+++...+ ..+ .+++|+++|+.+.. .++.+.. . ..+.+.+++.+..
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~-~~~~~~g~~~~v~yi~~e~~~~~--~rl~~~~~~~~~~~~~~~~~i~~~~ 92 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQ-LPGELGGLEGKVVYIDTEGAFRP--ERLVQLAVRFGLDPEEVLDNIYVAR 92 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhh-cccccCCCcceEEEEecCCCCCH--HHHHHHHHHhccchhhhhccEEEEe
Confidence 45899999999999999999999998877 445 88999999864432 2222111 1 2234455776665
Q ss_pred ecCHHHHHHHHHHhcc--cCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHh-hhcCCcEEEEe
Q 041690 86 VEDDEEIKKYFAAFHQ--HDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHA-NKKSPCKLLLS 162 (233)
Q Consensus 86 ~~~~~~l~~~~~~~~~--~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l-~~~~~~vlvi~ 162 (233)
....+.+...+..+.. ....+++||||++++++..... +... .....+.+..++..+..+ ++.+.+++++.
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~----~~~~--~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 93 PYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFI----GRGM--LAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhc----CCch--HHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 5555555555444321 1334899999999999874210 0100 111122334444545444 45566676666
Q ss_pred ecCCC--------CCchhHHHHHHhhccceEEEecC
Q 041690 163 DTHLG--------NSTRLLYIYKRWISSIFTVKGDG 190 (233)
Q Consensus 163 ~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~ 190 (233)
+.... ..|.+...+.++++.++.+....
T Consensus 167 q~~~~~~~~~~~~~~p~~G~~~~~~~~~ri~l~~~~ 202 (226)
T cd01393 167 QVRAKVDVMFGDPETPAGGNALAHASTTRLDLRKGR 202 (226)
T ss_pred EEeeecccccCCCccccCchhhhCcccEEEEEEecC
Confidence 54321 23556679999999999999754
No 38
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.59 E-value=1.3e-14 Score=118.75 Aligned_cols=154 Identities=20% Similarity=0.255 Sum_probs=91.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCeEEEEecCCcccccccccc-cccCCchhhhc--ceEEEEec-----
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS-NANVVFMCNRSRLQSKRPYLS-QSIDPSSHVFK--LIQMKYVE----- 87 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~-g~~v~yi~~e~~l~~~~~~~~-~~~~~~~~~~~--~i~~~~~~----- 87 (233)
++|+.++|+||||+|||+|+.|++.+.+ +. |.+|+|++.++..+.-...+. .+++ .+...+ ++.+....
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~-~~~ge~vlyvs~ee~~~~l~~~~~s~g~d-~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGL-KNFGEKVLYVSFEEPPEELIENMKSFGWD-LEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-HHHT--EEEEESSS-HHHHHHHHHTTTS--HHHHHHTTSEEEEESSGGGST
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhh-hhcCCcEEEEEecCCHHHHHHHHHHcCCc-HHHHhhcCCEEEEeccccccc
Confidence 5999999999999999999999999998 66 999999997742221111111 1222 122222 34442211
Q ss_pred ----CHHHH-HHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEe
Q 041690 88 ----DDEEI-KKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLS 162 (233)
Q Consensus 88 ----~~~~l-~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~ 162 (233)
....+ ..+...+. +..++++|||+++++... ..+...+.. +..+...+++.+.+++++.
T Consensus 95 ~~~~~~~~l~~~i~~~i~--~~~~~~vVIDsls~l~~~---------~~~~~~r~~-----l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIE--ELKPDRVVIDSLSALLLY---------DDPEELRRF-----LRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp -TSCCHHHHHHHHHHHHH--HHTSSEEEEETHHHHTTS---------SSGGGHHHH-----HHHHHHHHHHTTEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHH--hcCCCEEEEECHHHHhhc---------CCHHHHHHH-----HHHHHHHHHHCCCEEEEEE
Confidence 12222 22222222 223799999999999331 111222222 5566667778888888888
Q ss_pred ecCCCCCchhHHHHHH-hhccceEEEe
Q 041690 163 DTHLGNSTRLLYIYKR-WISSIFTVKG 188 (233)
Q Consensus 163 ~~~~~~~~~~~~~~~~-~~~~~~~i~~ 188 (233)
+......+.....+++ .+|.++.+..
T Consensus 159 ~~~~~~~~~~~~~i~~~l~D~vI~L~~ 185 (226)
T PF06745_consen 159 EMPSGSEDDGTFGIEHYLADGVIELRY 185 (226)
T ss_dssp EESSSSSSSSSTSHHHHHSSEEEEEEE
T ss_pred ccccCcccccccchhhhcccEEEEEEE
Confidence 8654433333445666 8899998885
No 39
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=99.58 E-value=3.6e-14 Score=120.82 Aligned_cols=163 Identities=12% Similarity=0.164 Sum_probs=95.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKY 95 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 95 (233)
.++|++++|+|||||||||||.+++.+++ ..|.+++||++|+.+... . ...++.. .+++.+......+.....
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~-~~g~~v~yId~E~~~~~~--~-a~~lGvd---~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALDPV--Y-ARKLGVD---IDNLLVSQPDTGEQALEI 124 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEcccchhHHH--H-HHHcCCC---HHHeEEecCCCHHHHHHH
Confidence 36899999999999999999999999988 678999999988644331 1 1111111 124444333344433333
Q ss_pred HHHhcccCCCCcEEEEeCCCccccccccccccCCc-chhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecC--------C
Q 041690 96 FAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNP-RGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTH--------L 166 (233)
Q Consensus 96 ~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~--------~ 166 (233)
...+.. ...+++|||||++++++...-+...++. .....+... ..+..+...+++.+.+++++.+.. .
T Consensus 125 ~~~li~-~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~--~~lr~L~~~l~~~~~tvi~tNQvr~~~g~~~~~ 201 (321)
T TIGR02012 125 AETLVR-SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMS--QALRKLTGALSKSNTTAIFINQIREKIGVMFGN 201 (321)
T ss_pred HHHHhh-ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHH--HHHHHHHHHHHhCCCEEEEEecceeccCcccCC
Confidence 332221 3349999999999998631111111111 111111111 123344445566677776665532 2
Q ss_pred CCCchhHHHHHHhhccceEEEe
Q 041690 167 GNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+..+.+..++.+|....+.+..
T Consensus 202 ~e~~~GG~aL~~~ss~r~~lrr 223 (321)
T TIGR02012 202 PETTTGGRALKFYASVRLDIRR 223 (321)
T ss_pred CccCcCccHHHHHHhHhHhhhh
Confidence 2345566688999888777764
No 40
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.58 E-value=7e-14 Score=114.84 Aligned_cols=175 Identities=13% Similarity=0.091 Sum_probs=102.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC-----CCeEEEEecCCccccccccccccc---C-CchhhhcceEEEEe
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQS-----NANVVFMCNRSRLQSKRPYLSQSI---D-PSSHVFKLIQMKYV 86 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~-----g~~v~yi~~e~~l~~~~~~~~~~~---~-~~~~~~~~i~~~~~ 86 (233)
.++|.+++|+||||||||+|+.+++....... +.+++|+++|+.+. +.++.+.. + ..+...+++.+...
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~--~~rl~~~~~~~~~~~~~~~~~i~~~~~ 93 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFR--PERLVQIAERFGLDPEEVLDNIYVARA 93 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcC--HHHHHHHHHHhccChHhHhcCEEEEec
Confidence 36899999999999999999999997765232 47899999886432 22222211 1 23345567766554
Q ss_pred cCHHHHHHHHHHhcc--cCC-CCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhh-hcCCcEEEEe
Q 041690 87 EDDEEIKKYFAAFHQ--HDK-IPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHAN-KKSPCKLLLS 162 (233)
Q Consensus 87 ~~~~~l~~~~~~~~~--~~~-~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~-~~~~~vlvi~ 162 (233)
.....+...+..+.. .+. .+++||||++++++..... ... ......+.+..++..++.+. +.+.+++++.
T Consensus 94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~-----~~~-~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 94 YNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFD-----GRG-ELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhc-----CCc-cHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 444433333332211 122 5999999999998763110 110 01122234555666666554 4455565554
Q ss_pred ecCC-C----------CCchhHHHHHHhhccceEEEecC--CccEEEee
Q 041690 163 DTHL-G----------NSTRLLYIYKRWISSIFTVKGDG--PGSFLLRN 198 (233)
Q Consensus 163 ~~~~-~----------~~~~~~~~~~~~~~~~~~i~~~~--~~~~~l~~ 198 (233)
+... . ..|.....+.+++...+.+...+ .+...+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~~~~r~~~i~k 216 (235)
T cd01123 168 QVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGRGEERIAKIVD 216 (235)
T ss_pred cEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECCCCceEEEEee
Confidence 4321 1 12445568899999888887653 23344444
No 41
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8e-15 Score=135.07 Aligned_cols=141 Identities=13% Similarity=0.189 Sum_probs=101.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
..+.++||+||||||||.||+++|. +.|-+++.++ ..+|+....+.. ...++++|
T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiAG----EAgVPF~svS-------GSEFvE~~~g~~--------------asrvr~lf 396 (774)
T KOG0731|consen 342 KIPKGVLLVGPPGTGKTLLAKAIAG----EAGVPFFSVS-------GSEFVEMFVGVG--------------ASRVRDLF 396 (774)
T ss_pred cCcCceEEECCCCCcHHHHHHHHhc----ccCCceeeec-------hHHHHHHhcccc--------------hHHHHHHH
Confidence 4678899999999999999995544 7777888874 344443322221 56889999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..++ ...|++|+||||+++...+.+...++.+++++.. .+||+.-||.+ .....||++++||+++......+.
T Consensus 397 ~~ar--~~aP~iifideida~~~~r~G~~~~~~~~e~e~t-lnQll~emDgf----~~~~~vi~~a~tnr~d~ld~allr 469 (774)
T KOG0731|consen 397 PLAR--KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQT-LNQLLVEMDGF----ETSKGVIVLAATNRPDILDPALLR 469 (774)
T ss_pred HHhh--ccCCeEEEecccccccccccccccCCCChHHHHH-HHHHHHHhcCC----cCCCcEEEEeccCCccccCHHhcC
Confidence 9887 5569999999999999843211112233444433 45666667776 334669999999999887777777
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..+||+.++|+..
T Consensus 470 pGRfdr~i~i~~p 482 (774)
T KOG0731|consen 470 PGRFDRQIQIDLP 482 (774)
T ss_pred CCccccceeccCC
Confidence 8899999999864
No 42
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.56 E-value=1.5e-14 Score=117.56 Aligned_cols=134 Identities=17% Similarity=0.268 Sum_probs=91.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
.+..+|+|||||||||.+|+++|. +...+.+.+ ...+.+....++. ...+++++.
T Consensus 150 APknVLFyGppGTGKTm~Akalan----e~kvp~l~v-------kat~liGehVGdg--------------ar~Ihely~ 204 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALAN----EAKVPLLLV-------KATELIGEHVGDG--------------ARRIHELYE 204 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhc----ccCCceEEe-------chHHHHHHHhhhH--------------HHHHHHHHH
Confidence 567899999999999999996654 444555555 3333333333332 668889999
Q ss_pred HhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHH
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYK 177 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~ 177 (233)
.+. +..||+|||||++++.-. .++..-++.-...++.|+.-++.+ ..+-.|+.|++||.++.... ..+
T Consensus 205 rA~--~~aPcivFiDE~DAiaLd----RryQelRGDVsEiVNALLTelDgi----~eneGVvtIaaTN~p~~LD~--aiR 272 (368)
T COG1223 205 RAR--KAAPCIVFIDELDAIALD----RRYQELRGDVSEIVNALLTELDGI----KENEGVVTIAATNRPELLDP--AIR 272 (368)
T ss_pred HHH--hcCCeEEEehhhhhhhhh----hhHHHhcccHHHHHHHHHHhccCc----ccCCceEEEeecCChhhcCH--HHH
Confidence 887 455999999999999875 333334445556777777777777 35677888999998864322 455
Q ss_pred HhhccceEEEe
Q 041690 178 RWISSIFTVKG 188 (233)
Q Consensus 178 ~~~~~~~~i~~ 188 (233)
.+|..-+.+.-
T Consensus 273 sRFEeEIEF~L 283 (368)
T COG1223 273 SRFEEEIEFKL 283 (368)
T ss_pred hhhhheeeeeC
Confidence 55555555443
No 43
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.55 E-value=2.2e-14 Score=118.20 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccccc-ccCCchhhhc-ceEEE----------
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQ-SIDPSSHVFK-LIQMK---------- 84 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~-~~~~~~~~~~-~i~~~---------- 84 (233)
++|+.++|+||||||||+|+.|++.+.+ ..|.+++|++.|+....-...+.. +++......+ ++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~~~~~~~ 97 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGGIGEA 97 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEeccccccccc
Confidence 6899999999999999999999999888 779999999977422111111111 1211111111 22221
Q ss_pred -----Ee-cCHHHHHHHHHHhcc--cCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCC
Q 041690 85 -----YV-EDDEEIKKYFAAFHQ--HDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSP 156 (233)
Q Consensus 85 -----~~-~~~~~l~~~~~~~~~--~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 156 (233)
|. .....+.+++..+.. .+..+++||||++++++... . ...+ ..++.+...+++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~--------~--~~~r-----~~l~~l~~~lk~~~~ 162 (237)
T TIGR03877 98 AEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITK--------P--AMAR-----SIVMQLKRVLSGLGC 162 (237)
T ss_pred cccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCC--------h--HHHH-----HHHHHHHHHHHhCCC
Confidence 10 011122222222211 13348999999999987621 0 1111 113445555678899
Q ss_pred cEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 157 CKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 157 ~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+++++++.+....+.....+++++|.++.+..
T Consensus 163 t~llt~~~~~~~~~~~~~~~~~~~D~vI~L~~ 194 (237)
T TIGR03877 163 TSIFVSQVSVGERGFGGPGVEHAVDGIIRLDL 194 (237)
T ss_pred EEEEEECcccccccccccceEEEEeEEEEEEE
Confidence 99888776543221111245778888888875
No 44
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.6e-14 Score=115.73 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=96.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
..+.++++|||||+|||.|+++++... ..+++-++ ..+.+....++. ...++++|
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht----~c~firvs-------gselvqk~igeg--------------srmvrelf 233 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVS-------GSELVQKYIGEG--------------SRMVRELF 233 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc----ceEEEEec-------hHHHHHHHhhhh--------------HHHHHHHH
Confidence 467889999999999999999776533 34455553 223333333322 56888999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
-.++ +..|++||.|||+++-.. |...+.+.+...+++++++++.+..+.... .+-++.++|+-+......+.
T Consensus 234 vmar--ehapsiifmdeidsigs~-----r~e~~~ggdsevqrtmlellnqldgfeatk-nikvimatnridild~allr 305 (404)
T KOG0728|consen 234 VMAR--EHAPSIIFMDEIDSIGSS-----RVESGSGGDSEVQRTMLELLNQLDGFEATK-NIKVIMATNRIDILDPALLR 305 (404)
T ss_pred HHHH--hcCCceEeeecccccccc-----cccCCCCccHHHHHHHHHHHHhcccccccc-ceEEEEeccccccccHhhcC
Confidence 8887 555999999999999884 444445567778899999988887554332 34445556666554445566
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..+.|+.+++++.
T Consensus 306 pgridrkiefp~p 318 (404)
T KOG0728|consen 306 PGRIDRKIEFPPP 318 (404)
T ss_pred CCcccccccCCCC
Confidence 7788888888864
No 45
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2e-14 Score=126.43 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=110.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
..-.++|||||||||||.+|+|+..-+- ....+++ ..++.+....+.+ +++++++|
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARqIGkMLN-ArePKIV---------NGPeIL~KYVGeS--------------E~NvR~LF 309 (744)
T KOG0741|consen 254 KHVKGILLYGPPGTGKTLIARQIGKMLN-AREPKIV---------NGPEILNKYVGES--------------EENVRKLF 309 (744)
T ss_pred cceeeEEEECCCCCChhHHHHHHHHHhc-CCCCccc---------CcHHHHHHhhccc--------------HHHHHHHH
Confidence 4567899999999999999999987665 2233333 5566666655554 78999999
Q ss_pred HHhccc------CCCCcEEEEeCCCccccccccccccCC--cchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCC
Q 041690 97 AAFHQH------DKIPTAVVVDDFGDLFDDRTCQERYTN--PRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGN 168 (233)
Q Consensus 97 ~~~~~~------~~~p~iIvIDei~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~ 168 (233)
+.+... ++...+|++|||++++. +|++. +.+-...+++||+.=||....+ .-++||+-||+.|
T Consensus 310 aDAEeE~r~~g~~SgLHIIIFDEiDAICK-----qRGS~~g~TGVhD~VVNQLLsKmDGVeqL----NNILVIGMTNR~D 380 (744)
T KOG0741|consen 310 ADAEEEQRRLGANSGLHIIIFDEIDAICK-----QRGSMAGSTGVHDTVVNQLLSKMDGVEQL----NNILVIGMTNRKD 380 (744)
T ss_pred HhHHHHHHhhCccCCceEEEehhhHHHHH-----hcCCCCCCCCccHHHHHHHHHhcccHHhh----hcEEEEeccCchh
Confidence 877432 34578999999999999 44433 3445556788999888988666 3589999999988
Q ss_pred CchhHHHHHHhhccceEEEe-cCCccEEEeecc
Q 041690 169 STRLLYIYKRWISSIFTVKG-DGPGSFLLRNKN 200 (233)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~ 200 (233)
-.+...+.+.++...++|.- ++.++..+-+++
T Consensus 381 lIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IH 413 (744)
T KOG0741|consen 381 LIDEALLRPGRLEVQMEISLPDEKGRLQILKIH 413 (744)
T ss_pred hHHHHhcCCCceEEEEEEeCCCccCceEEEEhh
Confidence 77666677788888888885 456665555544
No 46
>PRK04328 hypothetical protein; Provisional
Probab=99.54 E-value=4.4e-14 Score=117.26 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=88.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccc-cccCCchhhhc-ceEEEE---------
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLS-QSIDPSSHVFK-LIQMKY--------- 85 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~-~~~~~~~~~~~-~i~~~~--------- 85 (233)
++|+.++|+||||||||+|+.||+.+.+ ..|.+++|+++|+....-..... .+++..+...+ ++.+..
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~-~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~~~l~iid~~~~~~~~~ 99 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYEEEGKFAIVDAFTGGIGSA 99 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHhhcCCEEEEeccccccccc
Confidence 6899999999999999999999999887 67999999997642111000100 11211111111 222210
Q ss_pred ------e-cCHHHHHHHHHHhcc--cCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCC
Q 041690 86 ------V-EDDEEIKKYFAAFHQ--HDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSP 156 (233)
Q Consensus 86 ------~-~~~~~l~~~~~~~~~--~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 156 (233)
. .....+..++..+.. .+..+++||||++++++.. .. ...+ ..+..+...+++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~--------~~--~~~r-----~~~~~l~~~lk~~g~ 164 (249)
T PRK04328 100 AKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLT--------KP--AMAR-----SIVMQLKRVLSGLGC 164 (249)
T ss_pred cccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcC--------Ch--HHHH-----HHHHHHHHHHHhCCC
Confidence 0 011122222222211 1334899999999998752 10 1111 113444455677888
Q ss_pred cEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 157 CKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 157 ~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+++++++.+..+.+.....+++++|.++.+..
T Consensus 165 t~llt~e~~~~~~~~~~~~~~~~~D~vI~L~~ 196 (249)
T PRK04328 165 TAIFVSQVSVGERGFGGPGVEHAVDGIIRLDL 196 (249)
T ss_pred EEEEEECccccccccCCCCcEEEEEEEEEEEE
Confidence 89888776643222222245778898888875
No 47
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.53 E-value=6.1e-14 Score=125.99 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++.++||+||||||||++|+.+|. +.+.+++.++.. .......+.+ ...++++|
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~----e~~~~~~~l~~~-------~l~~~~vGes--------------e~~l~~~f 311 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIAN----DWQLPLLRLDVG-------KLFGGIVGES--------------ESRMRQMI 311 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHH----HhCCCEEEEEhH-------HhcccccChH--------------HHHHHHHH
Confidence 4668899999999999999998776 345666666521 1112222222 56788888
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|+|||++.++... ......+...++..+++ . .+......+++|+++|.++........
T Consensus 312 ~~A~--~~~P~IL~IDEID~~~~~~----~~~~d~~~~~rvl~~lL---~---~l~~~~~~V~vIaTTN~~~~Ld~allR 379 (489)
T CHL00195 312 RIAE--ALSPCILWIDEIDKAFSNS----ESKGDSGTTNRVLATFI---T---WLSEKKSPVFVVATANNIDLLPLEILR 379 (489)
T ss_pred HHHH--hcCCcEEEehhhhhhhccc----cCCCCchHHHHHHHHHH---H---HHhcCCCceEEEEecCChhhCCHHHhC
Confidence 8766 3349999999999988631 11111222223332222 2 233445678899999887654434334
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..+|+.+++++..
T Consensus 380 ~GRFD~~i~v~lP 392 (489)
T CHL00195 380 KGRFDEIFFLDLP 392 (489)
T ss_pred CCcCCeEEEeCCc
Confidence 4688999998864
No 48
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.52 E-value=1.2e-13 Score=109.40 Aligned_cols=151 Identities=17% Similarity=0.094 Sum_probs=85.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccc-cccCCchhhh-cceEEEE-----ecCHH---
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLS-QSIDPSSHVF-KLIQMKY-----VEDDE--- 90 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~-~~~~~~~~~~-~~i~~~~-----~~~~~--- 90 (233)
.++|+||||||||+|+.+++...+ +.|.+|+|++.|+..+.-..... .+++..+... ..+.+.. ....+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 378999999999999999999998 78999999998743222111111 1222111110 1122211 11111
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCC
Q 041690 91 ---EIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLG 167 (233)
Q Consensus 91 ---~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~ 167 (233)
.+..+...+. ...|++|||||++++++. ...... ..+.+++..+++.+.+++++++....
T Consensus 80 ~~~~~~~i~~~~~--~~~~~~lviD~~~~~~~~----------~~~~~~-----~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 80 RLELIQRLKDAIE--EFKAKRVVIDSVSGLLLM----------EQSTAR-----LEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred hHHHHHHHHHHHH--HhCCCEEEEeCcHHHhhc----------ChHHHH-----HHHHHHHHHHHHCCCEEEEEeccccC
Confidence 1122222222 234999999999998862 001111 11455566666778888888765543
Q ss_pred C-CchhHHHHHHhhccceEEEec
Q 041690 168 N-STRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 168 ~-~~~~~~~~~~~~~~~~~i~~~ 189 (233)
. .+.....++++.|.++.+...
T Consensus 143 ~~~~~~~~~~~~~aD~ii~l~~~ 165 (187)
T cd01124 143 EGTGFGGGDVEYLVDGVIRLRLD 165 (187)
T ss_pred CCcccCcCceeEeeeEEEEEEEE
Confidence 1 112223567888888888754
No 49
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.52 E-value=1.3e-13 Score=102.65 Aligned_cols=131 Identities=15% Similarity=0.256 Sum_probs=79.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHHHhcc
Q 041690 22 TLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFAAFHQ 101 (233)
Q Consensus 22 ~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~ 101 (233)
++|+||||||||++++.++... +.++++++... ........ ....+...+..+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----~~~~~~i~~~~-------~~~~~~~~--------------~~~~i~~~~~~~~~ 55 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----GFPFIEIDGSE-------LISSYAGD--------------SEQKIRDFFKKAKK 55 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----TSEEEEEETTH-------HHTSSTTH--------------HHHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc----ccccccccccc-------cccccccc--------------cccccccccccccc
Confidence 6899999999999999887743 57788886332 11111111 15567777776642
Q ss_pred cCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhc
Q 041690 102 HDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWIS 181 (233)
Q Consensus 102 ~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~ 181 (233)
.. .|++|+||+++.+.... ............ ..+++.+......+..+++|++++..+........ .+++
T Consensus 56 ~~-~~~vl~iDe~d~l~~~~-----~~~~~~~~~~~~---~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~ 125 (132)
T PF00004_consen 56 SA-KPCVLFIDEIDKLFPKS-----QPSSSSFEQRLL---NQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFD 125 (132)
T ss_dssp TS-TSEEEEEETGGGTSHHC-----STSSSHHHHHHH---HHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSE
T ss_pred cc-cceeeeeccchhccccc-----cccccccccccc---ceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCc
Confidence 22 38999999999999852 112222333333 33555555554544557777777665444333223 7778
Q ss_pred cceEEE
Q 041690 182 SIFTVK 187 (233)
Q Consensus 182 ~~~~i~ 187 (233)
..++++
T Consensus 126 ~~i~~~ 131 (132)
T PF00004_consen 126 RRIEFP 131 (132)
T ss_dssp EEEEE-
T ss_pred EEEEcC
Confidence 777764
No 50
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.52 E-value=8.5e-14 Score=122.43 Aligned_cols=140 Identities=15% Similarity=0.227 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..++|+||||||||++++.+|... +..++.+.. ..+...+.+.. ...++++|
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l----~~~fi~i~~-------s~l~~k~~ge~--------------~~~lr~lf 231 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHT----TATFIRVVG-------SEFVQKYLGEG--------------PRMVRDVF 231 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc----CCCEEEEeh-------HHHHHHhcchh--------------HHHHHHHH
Confidence 477899999999999999999877643 344554431 11112222111 45677788
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++++... +.+...+.+....+.+..+++.+...... ..+++|+++|.++........
T Consensus 232 ~~A~--~~~P~ILfIDEID~i~~~-----r~~~~~~~d~~~~r~l~~LL~~ld~~~~~-~~v~VI~aTN~~d~LDpAllR 303 (398)
T PTZ00454 232 RLAR--ENAPSIIFIDEVDSIATK-----RFDAQTGADREVQRILLELLNQMDGFDQT-TNVKVIMATNRADTLDPALLR 303 (398)
T ss_pred HHHH--hcCCeEEEEECHhhhccc-----cccccCCccHHHHHHHHHHHHHhhccCCC-CCEEEEEecCCchhCCHHHcC
Confidence 7765 344999999999999873 22222222233344444444444333222 346677777777654433222
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..+++..++++..
T Consensus 304 ~GRfd~~I~~~~P 316 (398)
T PTZ00454 304 PGRLDRKIEFPLP 316 (398)
T ss_pred CCcccEEEEeCCc
Confidence 3478888888764
No 51
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.51 E-value=8.1e-14 Score=131.85 Aligned_cols=137 Identities=19% Similarity=0.210 Sum_probs=91.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..+||+||||||||++++.+|. ..+.+++.+. .++.+..+.+.+ ...++.+|
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~----e~~~~fi~v~-------~~~l~~~~vGes--------------e~~i~~~f 539 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVAT----ESGANFIAVR-------GPEILSKWVGES--------------EKAIREIF 539 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH----hcCCCEEEEe-------hHHHhhcccCcH--------------HHHHHHHH
Confidence 3567899999999999999998776 3455666663 233333333332 56788899
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCC-cchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTN-PRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYI 175 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~ 175 (233)
..+. ...|++|||||++++... ++.. ......++.++|+..++.+ .....++||++||.++......+
T Consensus 540 ~~A~--~~~p~iifiDEid~l~~~-----r~~~~~~~~~~~~~~~lL~~ldg~----~~~~~v~vI~aTn~~~~ld~all 608 (733)
T TIGR01243 540 RKAR--QAAPAIIFFDEIDAIAPA-----RGARFDTSVTDRIVNQLLTEMDGI----QELSNVVVIAATNRPDILDPALL 608 (733)
T ss_pred HHHH--hcCCEEEEEEChhhhhcc-----CCCCCCccHHHHHHHHHHHHhhcc----cCCCCEEEEEeCCChhhCCHhhc
Confidence 8776 444999999999999984 2211 2223345556666655554 23456889999998875544322
Q ss_pred HHHhhccceEEEec
Q 041690 176 YKRWISSIFTVKGD 189 (233)
Q Consensus 176 ~~~~~~~~~~i~~~ 189 (233)
...+|+.+++++..
T Consensus 609 RpgRfd~~i~v~~P 622 (733)
T TIGR01243 609 RPGRFDRLILVPPP 622 (733)
T ss_pred CCCccceEEEeCCc
Confidence 23588988888864
No 52
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=5.1e-14 Score=127.47 Aligned_cols=151 Identities=13% Similarity=0.156 Sum_probs=106.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
-+.+++++||||||||.||+++|. +.+-+..+++ ..+|+....+.. ...++++|.
T Consensus 182 iPkGvlLvGpPGTGKTLLAkAvAg----EA~VPFf~iS-------GS~FVemfVGvG--------------AsRVRdLF~ 236 (596)
T COG0465 182 IPKGVLLVGPPGTGKTLLAKAVAG----EAGVPFFSIS-------GSDFVEMFVGVG--------------ASRVRDLFE 236 (596)
T ss_pred cccceeEecCCCCCcHHHHHHHhc----ccCCCceecc-------chhhhhhhcCCC--------------cHHHHHHHH
Confidence 457899999999999999995544 6677788874 445554444332 568899999
Q ss_pred HhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHH
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYK 177 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~ 177 (233)
.++ ++.||+||||||+++-+.+-.+ -++...+++.. .++|+.-||.+ ..+..++++++||+++......+..
T Consensus 237 qAk--k~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQT-LNQlLvEmDGF----~~~~gviviaaTNRpdVlD~ALlRp 308 (596)
T COG0465 237 QAK--KNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQT-LNQLLVEMDGF----GGNEGVIVIAATNRPDVLDPALLRP 308 (596)
T ss_pred Hhh--ccCCCeEEEehhhhcccccCCC-CCCCchHHHHH-HHHHHhhhccC----CCCCceEEEecCCCcccchHhhcCC
Confidence 887 5559999999999999953111 12223333322 35666667776 3456799999999998877777778
Q ss_pred HhhccceEEEec--CCccEEEeeccC
Q 041690 178 RWISSIFTVKGD--GPGSFLLRNKNY 201 (233)
Q Consensus 178 ~~~~~~~~i~~~--~~~~~~l~~~~~ 201 (233)
.+||+.+.++.. ..++.++.-|..
T Consensus 309 gRFDRqI~V~~PDi~gRe~IlkvH~~ 334 (596)
T COG0465 309 GRFDRQILVELPDIKGREQILKVHAK 334 (596)
T ss_pred CCcceeeecCCcchhhHHHHHHHHhh
Confidence 889998888864 445566664443
No 53
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.49 E-value=1.7e-13 Score=123.24 Aligned_cols=145 Identities=16% Similarity=0.243 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS----NANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEI 92 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~----g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 92 (233)
.++..++||||||||||++++.++..+.... +....|+... ....+....+. ....+
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~-----~~eLl~kyvGe--------------te~~i 274 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK-----GPELLNKYVGE--------------TERQI 274 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc-----chhhcccccch--------------HHHHH
Confidence 3667899999999999999999988765220 2233343211 11111111111 14466
Q ss_pred HHHHHHhccc--CCCCcEEEEeCCCccccccccccccC-CcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCC
Q 041690 93 KKYFAAFHQH--DKIPTAVVVDDFGDLFDDRTCQERYT-NPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNS 169 (233)
Q Consensus 93 ~~~~~~~~~~--~~~p~iIvIDei~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~ 169 (233)
+.+|..+... ...|++|||||+++++.. |+. .+.+.+.++..+|+..++.+. . ...+++|++||.++.
T Consensus 275 r~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~-----R~~~~s~d~e~~il~~LL~~LDgl~---~-~~~ViVI~ATN~~d~ 345 (512)
T TIGR03689 275 RLIFQRAREKASDGRPVIVFFDEMDSIFRT-----RGSGVSSDVETTVVPQLLSELDGVE---S-LDNVIVIGASNREDM 345 (512)
T ss_pred HHHHHHHHHHhhcCCCceEEEehhhhhhcc-----cCCCccchHHHHHHHHHHHHhcccc---c-CCceEEEeccCChhh
Confidence 7777766432 335999999999999974 221 223334455556655555542 2 245788888988765
Q ss_pred chhHHHHHHhhccceEEEec
Q 041690 170 TRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 170 ~~~~~~~~~~~~~~~~i~~~ 189 (233)
.......+.+|+..++++..
T Consensus 346 LDpALlRpGRfD~~I~~~~P 365 (512)
T TIGR03689 346 IDPAILRPGRLDVKIRIERP 365 (512)
T ss_pred CCHhhcCccccceEEEeCCC
Confidence 44432333588988888864
No 54
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.49 E-value=1.7e-13 Score=120.68 Aligned_cols=140 Identities=18% Similarity=0.196 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..++|+||||||||++|+.++... +..++.++.. .+.....+. ....++.+|
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~----~~~~i~v~~~-------~l~~~~~g~--------------~~~~i~~~f 217 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHET----NATFIRVVGS-------ELVQKFIGE--------------GARLVRELF 217 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHh----CCCEEEeehH-------HHhHhhccc--------------hHHHHHHHH
Confidence 466789999999999999999887643 4556666421 111111111 145667777
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++++.... .+..........+.+..++..+..... ...+++|+++|.++........
T Consensus 218 ~~a~--~~~p~IlfiDEiD~l~~~r-----~~~~~~~~~~~~~~l~~lL~~ld~~~~-~~~v~VI~aTn~~~~ld~allR 289 (389)
T PRK03992 218 ELAR--EKAPSIIFIDEIDAIAAKR-----TDSGTSGDREVQRTLMQLLAEMDGFDP-RGNVKIIAATNRIDILDPAILR 289 (389)
T ss_pred HHHH--hcCCeEEEEechhhhhccc-----ccCCCCccHHHHHHHHHHHHhccccCC-CCCEEEEEecCChhhCCHHHcC
Confidence 7665 3349999999999998742 212111122334444444443332222 2356777888776544333222
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..+|+..++++..
T Consensus 290 pgRfd~~I~v~~P 302 (389)
T PRK03992 290 PGRFDRIIEVPLP 302 (389)
T ss_pred CccCceEEEECCC
Confidence 3477888888864
No 55
>PRK05973 replicative DNA helicase; Provisional
Probab=99.49 E-value=3.4e-13 Score=110.42 Aligned_cols=133 Identities=20% Similarity=0.177 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccc-cccCCchhhhcceEEEEecCHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLS-QSIDPSSHVFKLIQMKYVEDDEEIKKY 95 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~ 95 (233)
.+|+.++|.|+||+|||+|+.+++.+.+ ..|.+++|++.|..-..-..++. .+++. +...+.+.+...+.. ....+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~Ge~vlyfSlEes~~~i~~R~~s~g~d~-~~~~~~~~~d~~d~~-~~~~i 138 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAM-KSGRTGVFFTLEYTEQDVRDRLRALGADR-AQFADLFEFDTSDAI-CADYI 138 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEEEEeCCHHHHHHHHHHcCCCh-HHhccceEeecCCCC-CHHHH
Confidence 6999999999999999999999999998 67999999997642111111111 12221 111122222222111 11112
Q ss_pred HHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCC
Q 041690 96 FAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLG 167 (233)
Q Consensus 96 ~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~ 167 (233)
+..+.. ...+++||||+++.+... ... .+.+.+ +..+...+++.+.+++++++.+..
T Consensus 139 i~~l~~-~~~~~lVVIDsLq~l~~~--------~~~-~el~~~-----~~~Lk~~Ak~~gitvIl~sQl~r~ 195 (237)
T PRK05973 139 IARLAS-APRGTLVVIDYLQLLDQR--------REK-PDLSVQ-----VRALKSFARERGLIIVFISQIDRS 195 (237)
T ss_pred HHHHHH-hhCCCEEEEEcHHHHhhc--------ccc-hhHHHH-----HHHHHHHHHhCCCeEEEEecCccc
Confidence 222211 234899999999887532 011 111111 233444456789999999888754
No 56
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.47 E-value=2.9e-13 Score=122.32 Aligned_cols=155 Identities=13% Similarity=0.126 Sum_probs=95.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccc-ccccCCchhhhc-ceEEEEec-----CH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYL-SQSIDPSSHVFK-LIQMKYVE-----DD 89 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~-~~~~~~~~~~~~-~i~~~~~~-----~~ 89 (233)
.+|+.++|.||||+|||+|+.||+.+.+ ..|.+++|++.|+..+.-..+. ..+++..+...+ ++.+.... ..
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~-~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~ 339 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENAC-ANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLE 339 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChH
Confidence 6999999999999999999999999998 7799999999774222111111 112222222222 35543322 13
Q ss_pred HHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCC--
Q 041690 90 EEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLG-- 167 (233)
Q Consensus 90 ~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~-- 167 (233)
+.+..+...+. +..|++||||+++++.... +. ...+. .++.+...+++.+.+++++.+++..
T Consensus 340 ~~~~~i~~~i~--~~~~~~vvIDsi~~~~~~~--------~~-~~~r~-----~~~~l~~~lk~~~it~~~t~~~~~~~~ 403 (484)
T TIGR02655 340 DHLQIIKSEIA--DFKPARIAIDSLSALARGV--------SN-NAFRQ-----FVIGVTGYAKQEEITGFFTNTSDQFMG 403 (484)
T ss_pred HHHHHHHHHHH--HcCCCEEEEcCHHHHHHhc--------CH-HHHHH-----HHHHHHHHHhhCCCeEEEeeccccccc
Confidence 44445555443 3449999999999987631 11 11111 2556677788899999999877642
Q ss_pred CCchhHHHHHHhhccceEEEe
Q 041690 168 NSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~i~~ 188 (233)
.......-..+..|.++.+.-
T Consensus 404 ~~~~~~~~~s~l~D~ii~l~~ 424 (484)
T TIGR02655 404 SHSITDSHISTITDTILMLQY 424 (484)
T ss_pred CCccCCCCeeEeeeEEEEEEE
Confidence 111111124566777777764
No 57
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.47 E-value=9.1e-13 Score=108.09 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=87.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccc-ccccCCchhhhc-ceEEEEe----cC-
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYL-SQSIDPSSHVFK-LIQMKYV----ED- 88 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~-~~~~~~~~~~~~-~i~~~~~----~~- 88 (233)
.++|+.++|.||||||||||+.+++...+ +.|.+++|++++.........+ ..+++..+...+ .+.+... ..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 36899999999999999999999998887 6789999999774222111111 112222111111 2222111 11
Q ss_pred ---HHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecC
Q 041690 89 ---DEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTH 165 (233)
Q Consensus 89 ---~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~ 165 (233)
...+..++..+. ...|++++|||+++++... ..... . ..+++.++.+++.+.+++++.++.
T Consensus 100 ~~~~~~l~~il~~~~--~~~~~~lVIDe~t~~l~~~--------~d~~~---~---~~l~~~l~~l~~~g~tvi~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRR--FYEKDVIIIDSLSSLISND--------ASEVA---V---NDLMAFFKRISSLNKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECccHHhcCC--------cchHH---H---HHHHHHHHHHHhCCCEEEEEeccc
Confidence 123333333322 2348999999999987521 01111 1 124556666666677666655544
Q ss_pred CCCCchhHHHHHHhhccceEEEec
Q 041690 166 LGNSTRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~i~~~ 189 (233)
..... .....++++|.++.+...
T Consensus 164 ~~~~~-~~~~~~~~~DgvI~L~~~ 186 (230)
T PRK08533 164 ELDES-VLTILRTAATMLIRLEVK 186 (230)
T ss_pred ccccc-cceeEEEeeeEEEEEEEe
Confidence 22111 112457778888888753
No 58
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=99.45 E-value=1.8e-12 Score=121.17 Aligned_cols=160 Identities=13% Similarity=0.162 Sum_probs=98.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccccc-ccCCchhhhcceEEEEecCHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQ-SIDPSSHVFKLIQMKYVEDDEEIKK 94 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~l~~ 94 (233)
.++|++++|+||||||||+||.+++...+ ..|.+++||++|+.+... +... +++. +++.+......+....
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~-~~G~~v~yId~E~t~~~~--~A~~lGvDl-----~~llv~~~~~~E~~l~ 128 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQ-AAGGVAAFIDAEHALDPD--YAKKLGVDT-----DSLLVSQPDTGEQALE 128 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEECCccchhHH--HHHHcCCCh-----hHeEEecCCCHHHHHH
Confidence 36899999999999999999999998887 678999999999766521 1111 1211 1333333333444333
Q ss_pred HHHHhcccCCCCcEEEEeCCCcccc-ccccccccCCcchhhHHHH-HHH-HHHHHHHHHhhhcCCcEEEEeecCC-----
Q 041690 95 YFAAFHQHDKIPTAVVVDDFGDLFD-DRTCQERYTNPRGRDLAMV-RTL-ALCYNAITHANKKSPCKLLLSDTHL----- 166 (233)
Q Consensus 95 ~~~~~~~~~~~p~iIvIDei~~~~~-~~~~~~~~~~~~~~~~~~~-~~l-~~l~~~~~~l~~~~~~vlvi~~~~~----- 166 (233)
....+. .+..+++|||||+++++. ....+ +.+.. ....+ +.+ ..++.+...+++.+.+++++.....
T Consensus 129 ~i~~lv-~~~~~~LVVIDSI~aL~~r~E~~g-~~g~~---~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~g~~ 203 (790)
T PRK09519 129 IADMLI-RSGALDIVVIDSVAALVPRAELEG-EMGDS---HVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVM 203 (790)
T ss_pred HHHHHh-hcCCCeEEEEcchhhhcchhhccC-CCCcc---cHHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecCCCc
Confidence 333321 134599999999999995 22111 11111 11111 111 1244455556666777777655432
Q ss_pred ---CCCchhHHHHHHhhccceEEEe
Q 041690 167 ---GNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 167 ---~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+..|.+..++.|+....+.+.+
T Consensus 204 fg~p~~~~GG~~l~h~ss~Ri~lrk 228 (790)
T PRK09519 204 FGSPETTTGGKALKFYASVRMDVRR 228 (790)
T ss_pred CCCCCcCCCCcccceeccEEEEeee
Confidence 2356677899999999999885
No 59
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.44 E-value=4.5e-13 Score=121.54 Aligned_cols=140 Identities=12% Similarity=0.174 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..++|+||||||||++++.+|. ..+.++++++.. .+.....+. ....++.+|
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~----~~~~~~~~i~~~-------~~~~~~~g~--------------~~~~l~~~f 140 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAG----EAGVPFFSISGS-------DFVEMFVGV--------------GASRVRDLF 140 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH----HcCCCeeeccHH-------HHHHHHhcc--------------cHHHHHHHH
Confidence 3556799999999999999998765 445667776421 111111111 155778888
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++++......+ ............++++..++.+ . ....++||+++|.++........
T Consensus 141 ~~a~--~~~p~Il~iDEid~l~~~r~~~--~~~~~~~~~~~~~~lL~~~d~~---~-~~~~v~vI~aTn~~~~ld~al~r 212 (495)
T TIGR01241 141 EQAK--KNAPCIIFIDEIDAVGRQRGAG--LGGGNDEREQTLNQLLVEMDGF---G-TNTGVIVIAATNRPDVLDPALLR 212 (495)
T ss_pred HHHH--hcCCCEEEEechhhhhhccccC--cCCccHHHHHHHHHHHhhhccc---c-CCCCeEEEEecCChhhcCHHHhc
Confidence 8765 3449999999999998742110 0011112223333444333333 2 23457888888887644333222
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
+.+|+..++++..
T Consensus 213 ~gRfd~~i~i~~P 225 (495)
T TIGR01241 213 PGRFDRQVVVDLP 225 (495)
T ss_pred CCcceEEEEcCCC
Confidence 3478888888754
No 60
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.44 E-value=3.4e-12 Score=104.93 Aligned_cols=155 Identities=13% Similarity=0.139 Sum_probs=87.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccc-ccccCCchhh-hcceEEEEe-------
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYL-SQSIDPSSHV-FKLIQMKYV------- 86 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~-~~~~~~~~~~-~~~i~~~~~------- 86 (233)
.++|+.++|+||||||||+|+.|++...+ ..|.+++|++.++........+ ..+++..+.. ...+.+...
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGAL-KQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHH-hCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 36899999999999999999999998887 6799999999875332211111 1112221111 112222111
Q ss_pred --cC-HHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEee
Q 041690 87 --ED-DEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSD 163 (233)
Q Consensus 87 --~~-~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~ 163 (233)
.. ...+..+...+. +..|++|||||++++.... .. . .+..+++.+..+++++.+++++++
T Consensus 101 ~~~~~~~ll~~l~~~i~--~~~~~~iviDs~t~~~~~~--------~~-~------~~~~~l~~l~~l~~~g~tvllt~~ 163 (234)
T PRK06067 101 NSTLANKLLELIIEFIK--SKREDVIIIDSLTIFATYA--------EE-D------DILNFLTEAKNLVDLGKTILITLH 163 (234)
T ss_pred CcchHHHHHHHHHHHHH--hcCCCEEEEecHHHHHhcC--------CH-H------HHHHHHHHHHHHHhCCCEEEEEec
Confidence 01 112222222222 2348999999999876521 10 1 112233445555567777777765
Q ss_pred cCCCCCchhHHHHHHhhccceEEEec
Q 041690 164 THLGNSTRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~i~~~ 189 (233)
.... .......+.++.|.++.+...
T Consensus 164 ~~~~-~~~~~~~~~~l~DgvI~L~~~ 188 (234)
T PRK06067 164 PYAF-SEELLSRIRSICDVYLKLRAE 188 (234)
T ss_pred CCcC-CHHHHHHHHhheEEEEEEEee
Confidence 4332 222223467778888887753
No 61
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.44 E-value=3.6e-13 Score=119.43 Aligned_cols=140 Identities=17% Similarity=0.227 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..++|+||||||||++++.++.... ..++.+... ++...+.+. ....++.+|
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~----~~fi~V~~s-------eL~~k~~Ge--------------~~~~vr~lF 269 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETS----ATFLRVVGS-------ELIQKYLGD--------------GPKLVRELF 269 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC----CCEEEEecc-------hhhhhhcch--------------HHHHHHHHH
Confidence 4778899999999999999998876443 344544311 111111111 144577778
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++++... +.......+...++.+..++..+..+.... .+.+|+++|..+.......-
T Consensus 270 ~~A~--~~~P~ILfIDEID~l~~k-----R~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~-~V~VI~ATNr~d~LDpaLlR 341 (438)
T PTZ00361 270 RVAE--ENAPSIVFIDEIDAIGTK-----RYDATSGGEKEIQRTMLELLNQLDGFDSRG-DVKVIMATNRIESLDPALIR 341 (438)
T ss_pred HHHH--hCCCcEEeHHHHHHHhcc-----CCCCCCcccHHHHHHHHHHHHHHhhhcccC-CeEEEEecCChHHhhHHhcc
Confidence 7665 345999999999999873 222222233344455555555554443332 45666677766544333222
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..+++..+.++..
T Consensus 342 pGRfd~~I~~~~P 354 (438)
T PTZ00361 342 PGRIDRKIEFPNP 354 (438)
T ss_pred CCeeEEEEEeCCC
Confidence 3578888888764
No 62
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.4e-13 Score=128.59 Aligned_cols=153 Identities=16% Similarity=0.224 Sum_probs=113.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.|++.+|++||||||||..++.++.++. ..+.++.|.. ...+.-++.|++++ ..+++-+|
T Consensus 297 tpPrgvL~~GppGTGkTl~araLa~~~s-~~~~kisffm-----rkgaD~lskwvgEa--------------ERqlrllF 356 (1080)
T KOG0732|consen 297 TPPRGVLFHGPPGTGKTLMARALAAACS-RGNRKISFFM-----RKGADCLSKWVGEA--------------ERQLRLLF 356 (1080)
T ss_pred CCCcceeecCCCCCchhHHHHhhhhhhc-ccccccchhh-----hcCchhhccccCcH--------------HHHHHHHH
Confidence 4788999999999999999999998887 6666666652 24455566666554 67888899
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|+||++|||+.+.+.+ +.-...-...++.+|+.+|+.+ .....|+|++++|+++....+...
T Consensus 357 eeA~--k~qPSIIffdeIdGlapvr-----SskqEqih~SIvSTLLaLmdGl----dsRgqVvvigATnRpda~dpaLRR 425 (1080)
T KOG0732|consen 357 EEAQ--KTQPSIIFFDEIDGLAPVR-----SSKQEQIHASIVSTLLALMDGL----DSRGQVVVIGATNRPDAIDPALRR 425 (1080)
T ss_pred HHHh--ccCceEEeccccccccccc-----cchHHHhhhhHHHHHHHhccCC----CCCCceEEEcccCCccccchhhcC
Confidence 9887 4449999999999998843 2233334455677888888887 556779999999999877766666
Q ss_pred HHhhccceEEEec--CCccEEEeecc
Q 041690 177 KRWISSIFTVKGD--GPGSFLLRNKN 200 (233)
Q Consensus 177 ~~~~~~~~~i~~~--~~~~~~l~~~~ 200 (233)
.+.|++.+++.-. .++..+|.-|.
T Consensus 426 Pgrfdref~f~lp~~~ar~~Il~Iht 451 (1080)
T KOG0732|consen 426 PGRFDREFYFPLPDVDARAKILDIHT 451 (1080)
T ss_pred CcccceeEeeeCCchHHHHHHHHHhc
Confidence 8889999998753 44444444433
No 63
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.43 E-value=1e-12 Score=107.31 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=89.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccc-ccccCCchhhhcceEEEEecCHH---HH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYL-SQSIDPSSHVFKLIQMKYVEDDE---EI 92 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~---~l 92 (233)
++|+.++|.|+||+|||+|+.+++...+ +.|.+++|++.|.....-...+ ..+++..+...+++.+......+ .+
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~-~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 92 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGL-KNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTSL 92 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhhH
Confidence 5799999999999999999999999888 6699999999874221111111 11222211111224332222111 11
Q ss_pred HHHHHHhcc--cCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCC-
Q 041690 93 KKYFAAFHQ--HDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNS- 169 (233)
Q Consensus 93 ~~~~~~~~~--~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~- 169 (233)
..+...+.. .+..++++|||+++.+... .......+.. ++.+++.+++.+.+++++++.+....
T Consensus 93 ~~l~~~~~~~i~~~~~~~vVIDsls~l~~~--------~~~~~~~r~~-----l~~l~~~lk~~~~tvll~s~~~~~~~~ 159 (224)
T TIGR03880 93 NRIKNELPILIKELGASRVVIDPISLLETL--------FDDDAERRTE-----LFRFYSSLRETGVTTILTSEADKTNVF 159 (224)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChHHHhhh--------cCCHHHHHHH-----HHHHHHHHHhCCCEEEEEEcccCCCCC
Confidence 222211110 1233889999999987431 0111111111 45566667778888888887654211
Q ss_pred chhHHHHHHhhccceEEEe
Q 041690 170 TRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 170 ~~~~~~~~~~~~~~~~i~~ 188 (233)
.......++.+|.++.+..
T Consensus 160 ~~~~~~~~~l~D~vI~L~~ 178 (224)
T TIGR03880 160 ASKYGLIEYLADGVIILKY 178 (224)
T ss_pred ccCCCceEEEEeEEEEEee
Confidence 1111246778888888874
No 64
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.39 E-value=3.7e-12 Score=104.30 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccccc-ccCCchhhhc--ceEEE--E-----
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQ-SIDPSSHVFK--LIQMK--Y----- 85 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~-~~~~~~~~~~--~i~~~--~----- 85 (233)
.++|+.++|+||||||||+|+.+++.+.+ ..|.+++|++.|...+.-...... +++ .+...+ ++.+. +
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~e~~~~~i~~~~~~~g~~-~~~~~~~~~l~i~d~~~~~~~ 94 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTTEESRESIIRQAAQFGMD-FEKAIEEGKLVIIDALMKEKE 94 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEccCCHHHHHHHHHHhCCC-HHHHhhcCCEEEEEccccccc
Confidence 46899999999999999999999998877 668999999977432211111100 111 111111 22210 0
Q ss_pred ------ecCHHHHHHHHH-HhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcE
Q 041690 86 ------VEDDEEIKKYFA-AFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCK 158 (233)
Q Consensus 86 ------~~~~~~l~~~~~-~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~v 158 (233)
....+.+..... ........++++|||+++.++... + ...+ . .++.+...+++.+.++
T Consensus 95 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~--------~--~~~r---~--~~~~l~~~l~~~~~tv 159 (229)
T TIGR03881 95 DEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDK--------P--AMAR---K--YSYYLKRVLNRWNFTI 159 (229)
T ss_pred cccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccC--------h--HHHH---H--HHHHHHHHHHhCCCEE
Confidence 001222222222 222112237899999999987521 1 1111 1 1334444556778888
Q ss_pred EEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 159 LLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 159 lvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+++++.+........+.+++.+|.++.+..
T Consensus 160 il~~~~~~~~~~~~~~~~~~l~D~vI~L~~ 189 (229)
T TIGR03881 160 LLTSQYAITTSQAFGFGIEHVADGIIRFRK 189 (229)
T ss_pred EEEecccccCCCCcccceEEEEeEEEEEEE
Confidence 888775432211111245677888888875
No 65
>CHL00176 ftsH cell division protein; Validated
Probab=99.38 E-value=2.3e-12 Score=119.25 Aligned_cols=139 Identities=14% Similarity=0.171 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
....++|+||||||||+|++.+|. +.+.++++++.. .+.....+. ....++.+|.
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~----e~~~p~i~is~s-------~f~~~~~g~--------------~~~~vr~lF~ 269 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAG----EAEVPFFSISGS-------EFVEMFVGV--------------GAARVRDLFK 269 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH----HhCCCeeeccHH-------HHHHHhhhh--------------hHHHHHHHHH
Confidence 456799999999999999998866 345677777522 111111111 1446777887
Q ss_pred HhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHH
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYK 177 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~ 177 (233)
.+. ...|++|||||++++...+..+. +...........+|+..++.+ .....+++++++|.++........+
T Consensus 270 ~A~--~~~P~ILfIDEID~l~~~r~~~~--~~~~~e~~~~L~~LL~~~dg~----~~~~~ViVIaaTN~~~~LD~ALlRp 341 (638)
T CHL00176 270 KAK--ENSPCIVFIDEIDAVGRQRGAGI--GGGNDEREQTLNQLLTEMDGF----KGNKGVIVIAATNRVDILDAALLRP 341 (638)
T ss_pred HHh--cCCCcEEEEecchhhhhcccCCC--CCCcHHHHHHHHHHHhhhccc----cCCCCeeEEEecCchHhhhhhhhcc
Confidence 765 44599999999999986321100 011111112222333222222 2334678888888765433332334
Q ss_pred HhhccceEEEec
Q 041690 178 RWISSIFTVKGD 189 (233)
Q Consensus 178 ~~~~~~~~i~~~ 189 (233)
.+|+..+.++..
T Consensus 342 GRFd~~I~v~lP 353 (638)
T CHL00176 342 GRFDRQITVSLP 353 (638)
T ss_pred ccCceEEEECCC
Confidence 578888887753
No 66
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=9.3e-13 Score=110.01 Aligned_cols=156 Identities=21% Similarity=0.280 Sum_probs=93.6
Q ss_pred cccccccccCCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEE---EecCCcccccccccccccCCchhhhcceEE
Q 041690 7 DGNQVEILETHVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVF---MCNRSRLQSKRPYLSQSIDPSSHVFKLIQM 83 (233)
Q Consensus 7 ~~~~~~~~~~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~y---i~~e~~l~~~~~~~~~~~~~~~~~~~~i~~ 83 (233)
+...+..-...-++.+|++||||||||+||+.+|..+..+...+..| |- + .+...++.|+.++
T Consensus 165 sek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----i-nshsLFSKWFsES--------- 230 (423)
T KOG0744|consen 165 SEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----I-NSHSLFSKWFSES--------- 230 (423)
T ss_pred HhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----E-ehhHHHHHHHhhh---------
Confidence 33334444445788999999999999999999888766442221111 10 0 2233445555444
Q ss_pred EEecCHHHHHHHHHHhccc---CCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEE
Q 041690 84 KYVEDDEEIKKYFAAFHQH---DKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLL 160 (233)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~---~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlv 160 (233)
++.+.++|..+... +...-.|+|||++++...+.+. .+++......+.++.++..+|.+ ++..-+++
T Consensus 231 -----gKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~-~S~~EpsDaIRvVNalLTQlDrl----K~~~Nvli 300 (423)
T KOG0744|consen 231 -----GKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSA-SSRNEPSDAIRVVNALLTQLDRL----KRYPNVLI 300 (423)
T ss_pred -----hhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhh-hcCCCCchHHHHHHHHHHHHHHh----ccCCCEEE
Confidence 66666776655322 2334578899999998864221 12233334457788888888877 45566777
Q ss_pred EeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 161 LSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 161 i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+++.|..+..+. ++-.+-|-++++.+
T Consensus 301 L~TSNl~~siD~--AfVDRADi~~yVG~ 326 (423)
T KOG0744|consen 301 LATSNLTDSIDV--AFVDRADIVFYVGP 326 (423)
T ss_pred EeccchHHHHHH--HhhhHhhheeecCC
Confidence 777776554322 33344455555554
No 67
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.38 E-value=2.8e-12 Score=121.46 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=84.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..++|+||||||||+|++.++... +..+++++. .+......+. ....++.+|
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~----~~~~i~i~~-------~~i~~~~~g~--------------~~~~l~~lf 264 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEA----GAYFISING-------PEIMSKYYGE--------------SEERLREIF 264 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHh----CCeEEEEec-------HHHhcccccH--------------HHHHHHHHH
Confidence 577899999999999999999887643 456666642 1222221111 155677788
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|+|||++++... +.......+.+.+.+|+.+++.+ . ....++++++++.++........
T Consensus 265 ~~a~--~~~p~il~iDEid~l~~~-----r~~~~~~~~~~~~~~Ll~~ld~l---~-~~~~vivI~atn~~~~ld~al~r 333 (733)
T TIGR01243 265 KEAE--ENAPSIIFIDEIDAIAPK-----REEVTGEVEKRVVAQLLTLMDGL---K-GRGRVIVIGATNRPDALDPALRR 333 (733)
T ss_pred HHHH--hcCCcEEEeehhhhhccc-----ccCCcchHHHHHHHHHHHHhhcc---c-cCCCEEEEeecCChhhcCHHHhC
Confidence 7765 344899999999999873 32233334445566666655544 2 33457778788776543322222
Q ss_pred HHhhccceEEEe
Q 041690 177 KRWISSIFTVKG 188 (233)
Q Consensus 177 ~~~~~~~~~i~~ 188 (233)
..+|+..+.+..
T Consensus 334 ~gRfd~~i~i~~ 345 (733)
T TIGR01243 334 PGRFDREIVIRV 345 (733)
T ss_pred chhccEEEEeCC
Confidence 336677777664
No 68
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.38 E-value=6.3e-12 Score=113.70 Aligned_cols=154 Identities=14% Similarity=0.115 Sum_probs=89.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccc-----cccCCchhhhc-ceEEEEe---
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLS-----QSIDPSSHVFK-LIQMKYV--- 86 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~-----~~~~~~~~~~~-~i~~~~~--- 86 (233)
.++|+.++|.||||||||+|+.||+.+.+.+.|.+++||+.++ .++.+. .+++..+...+ ++.+...
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE----~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~ 93 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE----SPQDIIKNARSFGWDLQKLVDEGKLFILDASPD 93 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CHHHHHHHHHHcCCCHHHHhhcCceEEEecCch
Confidence 3689999999999999999999999988844589999999663 332221 12222211111 2333211
Q ss_pred ----------cCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCC
Q 041690 87 ----------EDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSP 156 (233)
Q Consensus 87 ----------~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 156 (233)
+....+..+...+. ...++.|+||++.+++... ......+ ..+++++..+++.+.
T Consensus 94 ~~~~~~~~~~~l~~~l~~i~~~ls--~g~~qRVvIDSl~aL~~~~--------~~~~~~r-----~~l~~Li~~L~~~g~ 158 (484)
T TIGR02655 94 PEGQDVVGGFDLSALIERINYAIR--KYKAKRVSIDSVTAVFQQY--------DAVSVVR-----REIFRLVARLKQIGV 158 (484)
T ss_pred hccccccccCCHHHHHHHHHHHHH--HhCCcEEEEeehhHhhhhc--------CchHHHH-----HHHHHHHHHHHHCCC
Confidence 11122233333332 3348999999999886521 0001111 125566667777888
Q ss_pred cEEEEeecCCCCCchhHH-HHHHhhccceEEEe
Q 041690 157 CKLLLSDTHLGNSTRLLY-IYKRWISSIFTVKG 188 (233)
Q Consensus 157 ~vlvi~~~~~~~~~~~~~-~~~~~~~~~~~i~~ 188 (233)
+++++++..........+ +.++.+|.++.+..
T Consensus 159 TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~~ 191 (484)
T TIGR02655 159 TTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 191 (484)
T ss_pred EEEEEecCcccccccccCCceeEeeeeEEEEEE
Confidence 898888765321111111 23666788887764
No 69
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.1e-12 Score=114.46 Aligned_cols=157 Identities=18% Similarity=0.227 Sum_probs=100.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
++...+|++||||+|||.|++.+|. +.+..+..|+ .....+.+.+.. ...++.+|
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAs----E~~atff~iS-------assLtsK~~Ge~--------------eK~vralf 238 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIAT----ESGATFFNIS-------ASSLTSKYVGES--------------EKLVRALF 238 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHh----hhcceEeecc-------HHHhhhhccChH--------------HHHHHHHH
Confidence 5778999999999999999996665 5556666664 222233333332 56888899
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..++.. .|.+|||||++.++. +|.+...+...++..+++..++... ......++++++||.+...... +.
T Consensus 239 ~vAr~~--qPsvifidEidslls-----~Rs~~e~e~srr~ktefLiq~~~~~--s~~~drvlvigaTN~P~e~Dea-~~ 308 (428)
T KOG0740|consen 239 KVARSL--QPSVIFIDEIDSLLS-----KRSDNEHESSRRLKTEFLLQFDGKN--SAPDDRVLVIGATNRPWELDEA-AR 308 (428)
T ss_pred HHHHhc--CCeEEEechhHHHHh-----hcCCcccccchhhhhHHHhhhcccc--CCCCCeEEEEecCCCchHHHHH-HH
Confidence 888743 499999999999998 4554555555565555544444332 2334589999999998765543 55
Q ss_pred HHhhccceEEEec--CCccEEEeeccCcccccccc
Q 041690 177 KRWISSIFTVKGD--GPGSFLLRNKNYSRSCGLGK 209 (233)
Q Consensus 177 ~~~~~~~~~i~~~--~~~~~~l~~~~~~~~~~~~~ 209 (233)
++|.. +++|+.. +.+..++....+...+|+.+
T Consensus 309 Rrf~k-r~yiplPd~etr~~~~~~ll~~~~~~l~~ 342 (428)
T KOG0740|consen 309 RRFVK-RLYIPLPDYETRSLLWKQLLKEQPNGLSD 342 (428)
T ss_pred HHhhc-eeeecCCCHHHHHHHHHHHHHhCCCCccH
Confidence 55555 4447753 33334444333333455554
No 70
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.36 E-value=4e-12 Score=111.15 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..++|+||||||||++++.++.... ..++.+. .........+. ....++.+|
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l~----~~~~~v~-------~~~l~~~~~g~--------------~~~~i~~~f 208 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETN----ATFIRVV-------GSELVRKYIGE--------------GARLVREIF 208 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhCC----CCEEecc-------hHHHHHHhhhH--------------HHHHHHHHH
Confidence 3567899999999999999998876433 3343332 11111111111 134566667
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++.+.... .+.....+...++.+..++..+...... ..+.+|+++|.++.......-
T Consensus 209 ~~a~--~~~p~il~iDEiD~l~~~~-----~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~v~vI~ttn~~~~ld~al~r 280 (364)
T TIGR01242 209 ELAK--EKAPSIIFIDEIDAIAAKR-----TDSGTSGDREVQRTLMQLLAELDGFDPR-GNVKVIAATNRPDILDPALLR 280 (364)
T ss_pred HHHH--hcCCcEEEhhhhhhhcccc-----ccCCCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEecCChhhCChhhcC
Confidence 6554 3348999999999998632 2121112223344444444444322222 346677777765433322222
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..+++..++++..
T Consensus 281 ~grfd~~i~v~~P 293 (364)
T TIGR01242 281 PGRFDRIIEVPLP 293 (364)
T ss_pred cccCceEEEeCCc
Confidence 3467777777754
No 71
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.35 E-value=1.9e-12 Score=128.10 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccc-ccccc--cCCchh------hhcceE---EE
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRP-YLSQS--IDPSSH------VFKLIQ---MK 84 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~-~~~~~--~~~~~~------~~~~i~---~~ 84 (233)
.+++++||+||||||||.||+++|. ..+.+.+.|+..+-++..+. +.... .++++. ....+. +.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~----es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e 1703 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLAT----NSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLT 1703 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH----hcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhh
Confidence 5888999999999999999997766 55677888764432211100 00000 000000 000000 00
Q ss_pred --------EecC--HHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 041690 85 --------YVED--DEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKK 154 (233)
Q Consensus 85 --------~~~~--~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~ 154 (233)
.... ...++.+|+.|+ +..||+|+||||+++.... .+. ....+|+..++.... ...
T Consensus 1704 ~~n~~~~~m~~~e~~~rIr~lFelAR--k~SPCIIFIDEIDaL~~~d----------s~~-ltL~qLLneLDg~~~-~~s 1769 (2281)
T CHL00206 1704 MMNALTMDMMPKIDRFYITLQFELAK--AMSPCIIWIPNIHDLNVNE----------SNY-LSLGLLVNSLSRDCE-RCS 1769 (2281)
T ss_pred hcchhhhhhhhhhhHHHHHHHHHHHH--HCCCeEEEEEchhhcCCCc----------cce-ehHHHHHHHhccccc-cCC
Confidence 0011 124788899887 4459999999999998731 011 112333333333211 112
Q ss_pred CCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 155 SPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 155 ~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
...|+|+++||.++..+.+.+.++++|+.+.|..
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~ 1803 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRR 1803 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCC
Confidence 3468999999999877666566679999999874
No 72
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.34 E-value=8.5e-12 Score=95.81 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=79.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEec----CHHHHH-HH
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVE----DDEEIK-KY 95 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~l~-~~ 95 (233)
+++|+||||+|||+++.+++...+ ..+.+++|++.+.........+.. . ......+++.+.... ...... ..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~e~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA-TKGGKVVYVDIEEEIEELTERLIG-E-SLKGALDNLIIVFATADDPAAARLLSKA 77 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH-hcCCEEEEEECCcchHHHHHHHhh-h-hhccccccEEEEEcCCCCCcHHHHHHHH
Confidence 378999999999999999999888 678999999977432211111000 0 000011122221111 111111 11
Q ss_pred HHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCch----
Q 041690 96 FAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTR---- 171 (233)
Q Consensus 96 ~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~---- 171 (233)
...+. ...|.++||||++.+.+..... . ..... ...+ .+..+...+++.+.+++++++........
T Consensus 78 ~~~~~--~~~~~~lviDe~~~~~~~~~~~-~--~~~~~--~~~~---~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~ 147 (165)
T cd01120 78 ERLRE--RGGDDLIILDELTRLVRALREI-R--EGYPG--ELDE---ELRELLERARKGGVTVIFTLQVPSGDKGDPRLT 147 (165)
T ss_pred HHHHh--CCCCEEEEEEcHHHHHHHHHHH-H--hcCCh--HHHH---HHHHHHHHHhcCCceEEEEEecCCccccCcccc
Confidence 22222 3448999999999988631100 0 00001 1111 24445555556678888888776443211
Q ss_pred -hHHHHHHhhccceEE
Q 041690 172 -LLYIYKRWISSIFTV 186 (233)
Q Consensus 172 -~~~~~~~~~~~~~~i 186 (233)
+...+.++.|.++.+
T Consensus 148 ~~~~~~~~~~d~~~~l 163 (165)
T cd01120 148 RGAQNLEDIADTVIVL 163 (165)
T ss_pred cCccceeeecceEEEE
Confidence 222345555555544
No 73
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.31 E-value=4e-11 Score=100.56 Aligned_cols=162 Identities=11% Similarity=0.092 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccc-cc--ccCC---------c--------hh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYL-SQ--SIDP---------S--------SH 76 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~-~~--~~~~---------~--------~~ 76 (233)
.+|..++|.||||+|||+|+.+++..++...|.+|+|++.|........++ .+ +... . +.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDE 107 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHHHH
Confidence 699999999999999999999999998844499999999874221111111 00 0000 0 00
Q ss_pred hh--cceEEEEec---CHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHh
Q 041690 77 VF--KLIQMKYVE---DDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHA 151 (233)
Q Consensus 77 ~~--~~i~~~~~~---~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l 151 (233)
.. .++.+.... ..+.+...+..+.. ...+++||||+++.+.... .. ..... . .+..++..++.+
T Consensus 108 ~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~l~~~~----~~--~~~~~-~---~~~~~~~~L~~l 176 (271)
T cd01122 108 FEGTGRLFMYDSFGEYSMDSVLEKVRYMAV-SHGIQHIIIDNLSIMVSDE----RA--SGDER-K---ALDEIMTKLRGF 176 (271)
T ss_pred hcCCCcEEEEcCCCccCHHHHHHHHHHHHh-cCCceEEEECCHHHHhccC----CC--chhHH-H---HHHHHHHHHHHH
Confidence 10 122222111 12233333332211 3349999999999987631 00 01111 1 122234434433
Q ss_pred -hhcCCcEEEEeecCCCCC---------c-----hhHHHHHHhhccceEEEec
Q 041690 152 -NKKSPCKLLLSDTHLGNS---------T-----RLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 152 -~~~~~~vlvi~~~~~~~~---------~-----~~~~~~~~~~~~~~~i~~~ 189 (233)
++.+.+++++++.+.... | ++-..+..+.|.++.+..+
T Consensus 177 a~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~ 229 (271)
T cd01122 177 ATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERN 229 (271)
T ss_pred HHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEec
Confidence 456788888887664321 1 1122568889999888764
No 74
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.31 E-value=1.5e-11 Score=112.13 Aligned_cols=157 Identities=13% Similarity=0.045 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccc-ccccCCchhhhc-ceEEEEec-------
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYL-SQSIDPSSHVFK-LIQMKYVE------- 87 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~-~~~~~~~~~~~~-~i~~~~~~------- 87 (233)
++|+.++|+|+||+|||+|+.||+.+.+...|.+++|++.|+.-+.-...+ ..+++..+...+ .+.+....
T Consensus 29 p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~~ 108 (509)
T PRK09302 29 PKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQE 108 (509)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccccc
Confidence 689999999999999999999999988844499999999774221111111 112221111111 22221110
Q ss_pred ------CHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEE
Q 041690 88 ------DDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLL 161 (233)
Q Consensus 88 ------~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi 161 (233)
....+..+...+. ...+++||||++++++... ......+. .+..++..+++.+.+++++
T Consensus 109 ~~~~~~~~~l~~~l~~~i~--~~~~~~vVIDSls~l~~~~--------d~~~~~r~-----~l~~L~~~Lk~~g~TvLlt 173 (509)
T PRK09302 109 EAGEYDLEALFIRIEYAID--KIGAKRVVLDSIEALFSGF--------SNEAVVRR-----ELRRLFAWLKQKGVTAVIT 173 (509)
T ss_pred ccccccHHHHHHHHHHHHH--hhCCCEEEECCHHHHHhhc--------cCHHHHHH-----HHHHHHHHHHhCCCEEEEE
Confidence 0111222222222 3348999999999976521 11111111 1455566667788888888
Q ss_pred eecCCCCCchhH-HHHHHhhccceEEEe
Q 041690 162 SDTHLGNSTRLL-YIYKRWISSIFTVKG 188 (233)
Q Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~~~~i~~ 188 (233)
++......+... -+.+..+|.++.+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~laDgVI~L~~ 201 (509)
T PRK09302 174 GERGDEYGPLTRYGVEEFVSDCVIILRN 201 (509)
T ss_pred ECCccCcCCccccCceEEEeeEEEEEeE
Confidence 776542111100 023456788887775
No 75
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9e-12 Score=112.48 Aligned_cols=134 Identities=19% Similarity=0.235 Sum_probs=96.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+++.+|+|||||+|||.++++++. +.+..++++ ..++.+....++. ...+++.|
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~----e~~a~~~~i-------~~peli~k~~gEt--------------e~~LR~~f 270 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVAN----EYGAFLFLI-------NGPELISKFPGET--------------ESNLRKAF 270 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHH----HhCceeEec-------ccHHHHHhcccch--------------HHHHHHHH
Confidence 5889999999999999999996665 555566666 3344444333333 77899999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
+.+..... |.+|+|||++++.+. +..... .+.+...+++.+++.+. ....++++++++.++.... .+
T Consensus 271 ~~a~k~~~-psii~IdEld~l~p~-----r~~~~~-~e~Rv~sqlltL~dg~~----~~~~vivl~atnrp~sld~--al 337 (693)
T KOG0730|consen 271 AEALKFQV-PSIIFIDELDALCPK-----REGADD-VESRVVSQLLTLLDGLK----PDAKVIVLAATNRPDSLDP--AL 337 (693)
T ss_pred HHHhccCC-CeeEeHHhHhhhCCc-----ccccch-HHHHHHHHHHHHHhhCc----CcCcEEEEEecCCccccCh--hh
Confidence 98864332 999999999999984 322222 56778888888888873 4466889999998876543 44
Q ss_pred HH-hhccceEEEe
Q 041690 177 KR-WISSIFTVKG 188 (233)
Q Consensus 177 ~~-~~~~~~~i~~ 188 (233)
+| +||+-+.|.-
T Consensus 338 RRgRfd~ev~Igi 350 (693)
T KOG0730|consen 338 RRGRFDREVEIGI 350 (693)
T ss_pred hcCCCcceeeecC
Confidence 53 7888777764
No 76
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.31 E-value=3.6e-11 Score=95.64 Aligned_cols=156 Identities=12% Similarity=0.187 Sum_probs=91.2
Q ss_pred ccccccccccc---ccCCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcc--------ccccccccccc
Q 041690 3 ESFFDGNQVEI---LETHVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRL--------QSKRPYLSQSI 71 (233)
Q Consensus 3 ~~ff~~~~~~~---~~~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l--------~~~~~~~~~~~ 71 (233)
.++|+...+-. ....+|.++.|.||+|||||||++.+. ........-++++.+... .....++.|.+
T Consensus 9 ~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN--~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~f 86 (240)
T COG1126 9 SKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLN--GLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQF 86 (240)
T ss_pred eEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHH--CCcCCCCceEEECCEeccchhhHHHHHHhcCeecccc
Confidence 45666554421 233799999999999999999999653 332334445666553110 01111222222
Q ss_pred C--CchhhhcceEE----------------------------------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCC
Q 041690 72 D--PSSHVFKLIQM----------------------------------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFG 115 (233)
Q Consensus 72 ~--~~~~~~~~i~~----------------------------------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~ 115 (233)
. +...+++|+.. ..++.++..+-.++.+- ...|+++++||++
T Consensus 87 nLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL--aM~P~vmLFDEPT 164 (240)
T COG1126 87 NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL--AMDPKVMLFDEPT 164 (240)
T ss_pred cccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH--cCCCCEEeecCCc
Confidence 2 22223333322 22334455555555544 3339999999999
Q ss_pred ccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 116 DLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+.++. + ++ .++++.+..+++.|.+.+++++... ..+...|+++-++.
T Consensus 165 SALDP-------------E--lv---~EVL~vm~~LA~eGmTMivVTHEM~--------FAr~VadrviFmd~ 211 (240)
T COG1126 165 SALDP-------------E--LV---GEVLDVMKDLAEEGMTMIIVTHEMG--------FAREVADRVIFMDQ 211 (240)
T ss_pred ccCCH-------------H--HH---HHHHHHHHHHHHcCCeEEEEechhH--------HHHHhhheEEEeeC
Confidence 99984 1 12 2366777788889988888876421 45566676666664
No 77
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.27 E-value=2.4e-11 Score=110.71 Aligned_cols=156 Identities=13% Similarity=0.057 Sum_probs=90.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccc-cccCCchhhhc-ceEEEEecC-----H
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLS-QSIDPSSHVFK-LIQMKYVED-----D 89 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~-~~~~~~~~~~~-~i~~~~~~~-----~ 89 (233)
++|+.++|+||||+|||+|+.+++.+.+ ..|.+++|++.++..+.-..... .+++..+...+ .+.+..... .
T Consensus 271 ~~g~~~li~G~~G~GKT~l~~~~~~~~~-~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 349 (509)
T PRK09302 271 FRGSIILVSGATGTGKTLLASKFAEAAC-RRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLE 349 (509)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH-hCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHH
Confidence 5899999999999999999999999888 77999999997642211111111 12221111111 222221111 2
Q ss_pred HHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCC-
Q 041690 90 EEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGN- 168 (233)
Q Consensus 90 ~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~- 168 (233)
+.+..+...+. +..+++||||+++++.... .... .. ..+..+...+++.+.+++++.++....
T Consensus 350 ~~~~~i~~~i~--~~~~~~vVIDslt~l~~~~---------~~~~--~~---~~l~~l~~~~k~~~~t~l~t~~~~~~~g 413 (509)
T PRK09302 350 DHLIIIKREIE--EFKPSRVAIDPLSALARGG---------SLNE--FR---QFVIRLTDYLKSEEITGLFTNLTPDFMG 413 (509)
T ss_pred HHHHHHHHHHH--HcCCCEEEEcCHHHHHHhC---------CHHH--HH---HHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 22222333222 3348999999999987631 1111 11 124456666777888888887665321
Q ss_pred -CchhHHHHHHhhccceEEEec
Q 041690 169 -STRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 169 -~~~~~~~~~~~~~~~~~i~~~ 189 (233)
.......+++.+|.++.+...
T Consensus 414 ~~~~~~~~~~~l~D~vI~L~~~ 435 (509)
T PRK09302 414 SHSITESHISSLTDTWILLQYV 435 (509)
T ss_pred CCCCCcCceEEeeeEEEEEEEe
Confidence 111112356788888888863
No 78
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=99.24 E-value=4.5e-10 Score=95.65 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=92.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccc-cccCCchhhhcceEEEEecCHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLS-QSIDPSSHVFKLIQMKYVEDDEEIKKY 95 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~ 95 (233)
++|+++.|+||+|+|||||++++..+.. +.|..++||+.|..+... ++. .+.+. +++.+......+...++
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~~q-~~g~~~a~ID~e~~ld~~--~a~~lGvdl-----~rllv~~P~~~E~al~~ 122 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAEAQ-KQGGICAFIDAEHALDPE--YAESLGVDL-----DRLLVVQPDTGEQALWI 122 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-HTT-EEEEEESSS---HH--HHHHTT--G-----GGEEEEE-SSHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHhhh-cccceeEEecCcccchhh--HHHhcCccc-----cceEEecCCcHHHHHHH
Confidence 5789999999999999999999998777 679999999998655332 221 12221 25655555555554455
Q ss_pred HHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHH-HhhhcCCcEEEEeecC--------C
Q 041690 96 FAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAIT-HANKKSPCKLLLSDTH--------L 166 (233)
Q Consensus 96 ~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~l~~~~~~vlvi~~~~--------~ 166 (233)
.+.+.. ....++|||||+.++.+...-+...+..+.. ...+.+...+..+. .+.+.+.++++|...- .
T Consensus 123 ~e~lir-sg~~~lVVvDSv~al~p~~E~e~~~~~~~~g--~~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~ig~~~g~ 199 (322)
T PF00154_consen 123 AEQLIR-SGAVDLVVVDSVAALVPKAELEGEIGDQQVG--LQARLMSQALRKLTPLLSKSNTTLIFINQVRDKIGVMFGN 199 (322)
T ss_dssp HHHHHH-TTSESEEEEE-CTT-B-HHHHTTSTSSTSSS--HHHHHHHHHHHHHHHHHHTTT-EEEEEEEESSSSSSSSSS
T ss_pred HHHHhh-cccccEEEEecCcccCCHHHHhhccccccCc--chHHHHHHHHHHHHHHHHhhceEEEEeehHHHHHhhccCC
Confidence 444322 2236899999999998853211111111111 12233334444444 3444455555554431 2
Q ss_pred CCCchhHHHHHHhhccceEEEe
Q 041690 167 GNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+....+...+.+|....+.+..
T Consensus 200 ~~~t~GG~alkfyas~rl~i~k 221 (322)
T PF00154_consen 200 PETTPGGRALKFYASVRLEIRK 221 (322)
T ss_dssp SSCCTSHHHHHHHCSEEEEEEE
T ss_pred CcCCCCCchhhhhhhhHHhhhc
Confidence 2334577799999999998886
No 79
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.24 E-value=3.7e-11 Score=112.01 Aligned_cols=138 Identities=11% Similarity=0.149 Sum_probs=83.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFAA 98 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 98 (233)
+..++|+||||||||++++.++. +.+.++++++.. .+.....+. ....++.+|..
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~----~~~~~f~~is~~-------~~~~~~~g~--------------~~~~~~~~f~~ 239 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAG----EAKVPFFTISGS-------DFVEMFVGV--------------GASRVRDMFEQ 239 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH----HcCCCEEEEehH-------HhHHhhhcc--------------cHHHHHHHHHH
Confidence 45699999999999999997765 445667776522 111111111 14567777776
Q ss_pred hcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHH
Q 041690 99 FHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKR 178 (233)
Q Consensus 99 ~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~ 178 (233)
+. ...|++|||||++++...+..+. +..........++++..++.+ .....+++|+++|.++..........
T Consensus 240 a~--~~~P~IifIDEiD~l~~~r~~~~--~g~~~~~~~~ln~lL~~mdg~----~~~~~vivIaaTN~p~~lD~Al~Rpg 311 (644)
T PRK10733 240 AK--KAAPCIIFIDEIDAVGRQRGAGL--GGGHDEREQTLNQMLVEMDGF----EGNEGIIVIAATNRPDVLDPALLRPG 311 (644)
T ss_pred HH--hcCCcEEEehhHhhhhhccCCCC--CCCchHHHHHHHHHHHhhhcc----cCCCCeeEEEecCChhhcCHHHhCCc
Confidence 65 33499999999999987421110 011112222334444444443 23456888999998875443333335
Q ss_pred hhccceEEEec
Q 041690 179 WISSIFTVKGD 189 (233)
Q Consensus 179 ~~~~~~~i~~~ 189 (233)
+|+..+.++..
T Consensus 312 Rfdr~i~v~~P 322 (644)
T PRK10733 312 RFDRQVVVGLP 322 (644)
T ss_pred ccceEEEcCCC
Confidence 78888888764
No 80
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.21 E-value=1.8e-10 Score=94.98 Aligned_cols=144 Identities=13% Similarity=0.160 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC------------------CeEEEEecCCccccc---cc-----ccc--
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSN------------------ANVVFMCNRSRLQSK---RP-----YLS-- 68 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g------------------~~v~yi~~e~~l~~~---~~-----~~~-- 68 (233)
++|.++.|.||+|||||||++.++.......| +.+.|+.++...... .+ +.+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~ 105 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL 105 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc
Confidence 68999999999999999999988865552221 134555443110000 00 000
Q ss_pred cccC-----C---chhhhcceEE--------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcch
Q 041690 69 QSID-----P---SSHVFKLIQM--------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRG 132 (233)
Q Consensus 69 ~~~~-----~---~~~~~~~i~~--------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~ 132 (233)
.++. + ...+++.+.+ ..++.++..+-.++.+-.++ |+++++||++++++..
T Consensus 106 ~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~--~~iLLLDEPTs~LDi~----------- 172 (258)
T COG1120 106 GLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQE--TPILLLDEPTSHLDIA----------- 172 (258)
T ss_pred ccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcC--CCEEEeCCCccccCHH-----------
Confidence 0111 0 0111222221 33445666666666555333 9999999999999941
Q ss_pred hhHHHHHHHHHHHHHHHHhhhc-CCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 133 RDLAMVRTLALCYNAITHANKK-SPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 133 ~~~~~~~~l~~l~~~~~~l~~~-~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
.-.+++++++.++++ |.+++++.+.- + ..-+|.|+++.+..
T Consensus 173 -------~Q~evl~ll~~l~~~~~~tvv~vlHDl--N------~A~ryad~~i~lk~ 214 (258)
T COG1120 173 -------HQIEVLELLRDLNREKGLTVVMVLHDL--N------LAARYADHLILLKD 214 (258)
T ss_pred -------HHHHHHHHHHHHHHhcCCEEEEEecCH--H------HHHHhCCEEEEEEC
Confidence 123378888888844 77777775531 1 55678888888875
No 81
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4.6e-11 Score=102.86 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=88.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+-+.+++|||||+|||.+++.+|. +.|-....+++- +..+.+.+. ...+.++|
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr----~SGlDYA~mTGG-------DVAPlG~qa---------------VTkiH~lF 435 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELAR----HSGLDYAIMTGG-------DVAPLGAQA---------------VTKIHKLF 435 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHh----hcCCceehhcCC-------CccccchHH---------------HHHHHHHH
Confidence 4778999999999999999996655 556555444311 111111100 56888999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
+++..... -=++||||.++|+..++ ...++.....+ +..++.+-..+...++++-++|++... .+.+
T Consensus 436 DWakkS~r-GLllFIDEADAFLceRn---ktymSEaqRsa-------LNAlLfRTGdqSrdivLvlAtNrpgdl--DsAV 502 (630)
T KOG0742|consen 436 DWAKKSRR-GLLLFIDEADAFLCERN---KTYMSEAQRSA-------LNALLFRTGDQSRDIVLVLATNRPGDL--DSAV 502 (630)
T ss_pred HHHhhccc-ceEEEehhhHHHHHHhc---hhhhcHHHHHH-------HHHHHHHhcccccceEEEeccCCccch--hHHH
Confidence 99876543 45999999999998431 11122222211 344454555667778888888887643 4578
Q ss_pred HHhhccceEEEecCC
Q 041690 177 KRWISSIFTVKGDGP 191 (233)
Q Consensus 177 ~~~~~~~~~i~~~~~ 191 (233)
..+++.+++++-.|.
T Consensus 503 ~DRide~veFpLPGe 517 (630)
T KOG0742|consen 503 NDRIDEVVEFPLPGE 517 (630)
T ss_pred HhhhhheeecCCCCh
Confidence 888899999886543
No 82
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.20 E-value=9.7e-12 Score=100.70 Aligned_cols=176 Identities=13% Similarity=0.103 Sum_probs=106.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhh-----cCCCeEEEEecCCcccccccccccccC----CchhhhcceEE-EEec
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCAS-----QSNANVVFMCNRSRLQSKRPYLSQSID----PSSHVFKLIQM-KYVE 87 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~-----~~g~~v~yi~~e~~l~~~~~~~~~~~~----~~~~~~~~i~~-~~~~ 87 (233)
.-.++.++|.||||||.++.+++..+.. -.+++++||+||++|.. +++.+..+ +.+..++||.. .-..
T Consensus 114 ~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrp--dRi~~IAe~~~~d~d~~LdNI~y~Ra~~ 191 (335)
T KOG1434|consen 114 SMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRP--DRIKDIAERFKVDPDFTLDNILYFRAYN 191 (335)
T ss_pred chhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccch--HHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 5567889999999999999988765542 23789999999986543 33433322 44555665543 1111
Q ss_pred C---HHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeec
Q 041690 88 D---DEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDT 164 (233)
Q Consensus 88 ~---~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~ 164 (233)
. .+.+..+-+.+.. .....+||||+|.+.++... +.++.....++.|..+...+..++++....++++++
T Consensus 192 se~qmelv~~L~~~~se-~g~~rlvIVDsIma~FRvDy------~grgeLseRqqkLn~ml~kl~~laeefnvAVfltNQ 264 (335)
T KOG1434|consen 192 SEEQMELVYLLGDFLSE-HGKYRLVIVDSIMALFRVDY------DGRGELSERQQKLNQMLQKLNKLAEEFNVAVFLTNQ 264 (335)
T ss_pred hHHHHHHHHHHHHHHhh-cCcEEEEEEeceehheeecc------cccccHHHHHHHHHHHHHHHHHHHHhccEEEEEecc
Confidence 1 2222222222232 23488999999999998422 122233334444555555555666665555565554
Q ss_pred C------------CCCCchhHHHHHHhhccceEEEecCCccEEEeeccCcc
Q 041690 165 H------------LGNSTRLLYIYKRWISSIFTVKGDGPGSFLLRNKNYSR 203 (233)
Q Consensus 165 ~------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~ 203 (233)
. ..-.|.+...|.|-....+.+.. +.++.++.+.-.++
T Consensus 265 vttdpga~~~f~s~~~kp~gGh~~aHAsttRlilrk-grg~eR~Akl~dSP 314 (335)
T KOG1434|consen 265 VTTDPGAGMTFASQDLKPAGGHSWAHASTTRLILRK-GRGDERVAKLYDSP 314 (335)
T ss_pred eecCCcccccccccccCccccchhhhhhheeEEEEc-CCcceeeeecccCC
Confidence 2 11346677788888887777775 34467777766664
No 83
>PRK06893 DNA replication initiation factor; Validated
Probab=99.18 E-value=2.6e-10 Score=93.54 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
....++|+||||||||+|+..++.... ..+.++.|++
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~y~~ 74 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL-LNQRTAIYIP 74 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEee
Confidence 345689999999999999999998877 5678899996
No 84
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.17 E-value=5.6e-10 Score=92.08 Aligned_cols=155 Identities=15% Similarity=0.161 Sum_probs=83.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhh-----------cCCCeEEEEecCCcccccccccc---cccCCchhhhcceEEE
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCAS-----------QSNANVVFMCNRSRLQSKRPYLS---QSIDPSSHVFKLIQMK 84 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~-----------~~g~~v~yi~~e~~l~~~~~~~~---~~~~~~~~~~~~i~~~ 84 (233)
|.+.+|+||||+|||+|+.++|.+++. ..+.+|+|++.|.....-..++. ..++. ....+++.+.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~-~~~~~rl~~~ 79 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEP-DDAGDRLFID 79 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCC-cCcccceEEe
Confidence 567899999999999999999988662 13678999998853222111111 11110 0011122111
Q ss_pred ----------E---ecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHh
Q 041690 85 ----------Y---VEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHA 151 (233)
Q Consensus 85 ----------~---~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l 151 (233)
. ......+..+.+.+. ...|++||||++.++... . ...... ... +++.+..+
T Consensus 80 ~g~~~~l~~~~~~~~~~~~~~~~l~~~~~--~~~~~lvviDpl~~~~~~-----~--~~d~~~---~~~---~~~~L~~~ 144 (239)
T cd01125 80 SGRIQPISIAREGRIIVVPEFERIIEQLL--IRRIDLVVIDPLVSFHGV-----S--ENDNGA---MDA---VIKALRRI 144 (239)
T ss_pred ccCCCceecccCCcccccHHHHHHHHHHH--hcCCCEEEECChHHhCCC-----C--cCCHHH---HHH---HHHHHHHH
Confidence 1 112234444444433 234999999998887321 0 011111 111 33444443
Q ss_pred h-hcCCcEEEEeecCCC--------CCchhHHHHHHhhccceEEEec
Q 041690 152 N-KKSPCKLLLSDTHLG--------NSTRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 152 ~-~~~~~vlvi~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~ 189 (233)
. +.+.+++++.+++.. ...++-..+..-.+.++.+.+.
T Consensus 145 a~~~g~avl~v~H~~K~~~~~~~~~~~~rGssal~~~~r~~~~l~~~ 191 (239)
T cd01125 145 AAQTGAAILLVHHVRKGSAKDGDTQEAARGASALVDGARWVRALTRM 191 (239)
T ss_pred HHHhCCEEEEEeccCcccccCcccccccCcHHHHhcccceEEEEeeC
Confidence 3 447788888887633 2234444555556667776653
No 85
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.16 E-value=5.6e-10 Score=91.77 Aligned_cols=145 Identities=13% Similarity=0.165 Sum_probs=91.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC---------------CCeEEEEecCCccccccc-----ccccc-----
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQS---------------NANVVFMCNRSRLQSKRP-----YLSQS----- 70 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~---------------g~~v~yi~~e~~l~~~~~-----~~~~~----- 70 (233)
.++|+.+.|.||+|+|||||.+.++.-..... +..+.|+.+...+....+ ++..+
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~ 106 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK 106 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccc
Confidence 37999999999999999999998875443221 135777765321111111 11100
Q ss_pred --cC--------CchhhhcceEE--------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcch
Q 041690 71 --ID--------PSSHVFKLIQM--------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRG 132 (233)
Q Consensus 71 --~~--------~~~~~~~~i~~--------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~ 132 (233)
+. ..+.+++++.+ ..++.++..+-+++.+-.. .|+++++||+.+-.+..
T Consensus 107 g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~--~p~lllLDEP~~gvD~~----------- 173 (254)
T COG1121 107 GWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ--NPDLLLLDEPFTGVDVA----------- 173 (254)
T ss_pred cccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc--CCCEEEecCCcccCCHH-----------
Confidence 00 11223333333 3345566777777766533 39999999999988831
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 133 RDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 133 ~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
.. ..+++++..++++|.+++++++.-. ....++|.++.+..
T Consensus 174 --~~-----~~i~~lL~~l~~eg~tIl~vtHDL~--------~v~~~~D~vi~Ln~ 214 (254)
T COG1121 174 --GQ-----KEIYDLLKELRQEGKTVLMVTHDLG--------LVMAYFDRVICLNR 214 (254)
T ss_pred --HH-----HHHHHHHHHHHHCCCEEEEEeCCcH--------HhHhhCCEEEEEcC
Confidence 11 1277888888888888888866321 56778899998886
No 86
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.15 E-value=7.3e-10 Score=91.31 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=38.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCC
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRS 58 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~ 58 (233)
..+|..++|.|+||+|||+|+.+++...+...|.+++|++.|.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 3589999999999999999999999999844499999999874
No 87
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.15 E-value=3.4e-10 Score=91.63 Aligned_cols=142 Identities=14% Similarity=0.256 Sum_probs=81.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC--Cccc---------ccccccccccC--CchhhhcceE
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR--SRLQ---------SKRPYLSQSID--PSSHVFKLIQ 82 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e--~~l~---------~~~~~~~~~~~--~~~~~~~~i~ 82 (233)
.++|..+.|.||+|||||||+..++.-.. ..++ .+++... ..+. ....++.|.+. +.-.+.+|+.
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~-pt~G-~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDK-PTSG-EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCc-eEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 37999999999999999999987764333 3333 3333321 0000 00112222211 1112222222
Q ss_pred -------------------------E---------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccC
Q 041690 83 -------------------------M---------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYT 128 (233)
Q Consensus 83 -------------------------~---------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~ 128 (233)
+ ..++.++..+-.++.+-. ..|++|+-||++.-++..
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~--~~P~iilADEPTgnLD~~------- 176 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI--NNPKIILADEPTGNLDSK------- 176 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh--cCCCeEEeeCccccCChH-------
Confidence 1 123334555555554442 239999999999999842
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhhhc-CCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 129 NPRGRDLAMVRTLALCYNAITHANKK-SPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 129 ~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
.... +++++..++++ |.+++|+++.. .+..+.++++.+..
T Consensus 177 ------t~~~-----V~~ll~~~~~~~g~tii~VTHd~---------~lA~~~dr~i~l~d 217 (226)
T COG1136 177 ------TAKE-----VLELLRELNKERGKTIIMVTHDP---------ELAKYADRVIELKD 217 (226)
T ss_pred ------HHHH-----HHHHHHHHHHhcCCEEEEEcCCH---------HHHHhCCEEEEEeC
Confidence 1112 67778777655 67777776642 34557888888875
No 88
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=9.4e-10 Score=87.37 Aligned_cols=150 Identities=11% Similarity=0.149 Sum_probs=96.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccC----Cchhhhc-ceEEEEe-----
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSID----PSSHVFK-LIQMKYV----- 86 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~----~~~~~~~-~i~~~~~----- 86 (233)
+-|+.++|.|+.|+|||.|++++++-.. .+|.++.|++||. ...+++.|+.. ..+.... ++.+..+
T Consensus 26 P~GsL~lIEGd~~tGKSvLsqr~~YG~L-~~g~~v~yvsTe~---T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~ 101 (235)
T COG2874 26 PVGSLILIEGDNGTGKSVLSQRFAYGFL-MNGYRVTYVSTEL---TVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPV 101 (235)
T ss_pred ccCeEEEEECCCCccHHHHHHHHHHHHH-hCCceEEEEEech---hHHHHHHHHHhcCCCchHHHhcceeEEEEeccccc
Confidence 6789999999999999999999999888 8899999999986 44555555432 2222222 3333211
Q ss_pred -cCHH----HHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEE
Q 041690 87 -EDDE----EIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLL 161 (233)
Q Consensus 87 -~~~~----~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi 161 (233)
+..+ .+..++...+..+ -++|+||+++++.... . ....+.++..++.+..+|..++++
T Consensus 102 ~~~~~~~~~~L~~l~~~~k~~~--~dViIIDSls~~~~~~-----------~----~~~vl~fm~~~r~l~d~gKvIilT 164 (235)
T COG2874 102 NWGRRSARKLLDLLLEFIKRWE--KDVIIIDSLSAFATYD-----------S----EDAVLNFMTFLRKLSDLGKVIILT 164 (235)
T ss_pred ccChHHHHHHHHHHHhhHHhhc--CCEEEEecccHHhhcc-----------c----HHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1122 3333333333222 6899999999998741 1 112344677778887888877777
Q ss_pred eecCCCCCchhHHHHHHhhccceEEEe
Q 041690 162 SDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
.+.+.-+ ......++-.++..+.+..
T Consensus 165 vhp~~l~-e~~~~rirs~~d~~l~L~~ 190 (235)
T COG2874 165 VHPSALD-EDVLTRIRSACDVYLRLRL 190 (235)
T ss_pred eChhhcC-HHHHHHHHHhhheeEEEEh
Confidence 6665322 1223455666777776664
No 89
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.14 E-value=2.7e-10 Score=95.16 Aligned_cols=42 Identities=29% Similarity=0.572 Sum_probs=38.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCC
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRS 58 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~ 58 (233)
.++|+.++|+|+||||||+|+.||+...+ ..|.+|+||++++
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~-~~ge~vlyvs~~e 61 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGA-REGEPVLYVSTEE 61 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHH-hcCCcEEEEEecC
Confidence 36999999999999999999999999999 6699999999773
No 90
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.14 E-value=1.2e-09 Score=84.99 Aligned_cols=134 Identities=10% Similarity=0.087 Sum_probs=78.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEE-ecCHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKY-VEDDEEIKK 94 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~l~~ 94 (233)
.++|..+.|.||+|+|||||++.++.... ...+.+ +++... +.... ..+.....+...+ ++..+..+-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v-~~~g~~-~~~~~--------~~~~~~~~i~~~~qLS~G~~qrl 91 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYK-PDSGEI-LVDGKE-VSFAS--------PRDARRAGIAMVYQLSVGERQMV 91 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEE-EECCEE-CCcCC--------HHHHHhcCeEEEEecCHHHHHHH
Confidence 37999999999999999999998876544 333443 443221 00000 0001111222222 444555444
Q ss_pred HHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHH
Q 041690 95 YFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLY 174 (233)
Q Consensus 95 ~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~ 174 (233)
.+..+-.. .|+++++||+++-++. ..+.. +.+.++.+++++.+++++++...
T Consensus 92 ~laral~~--~p~illlDEP~~~LD~-------------~~~~~-----l~~~l~~~~~~~~tiii~sh~~~-------- 143 (163)
T cd03216 92 EIARALAR--NARLLILDEPTAALTP-------------AEVER-----LFKVIRRLRAQGVAVIFISHRLD-------- 143 (163)
T ss_pred HHHHHHhc--CCCEEEEECCCcCCCH-------------HHHHH-----HHHHHHHHHHCCCEEEEEeCCHH--------
Confidence 45444322 3999999999999983 11112 55666666556777777655421
Q ss_pred HHHHhhccceEEEe
Q 041690 175 IYKRWISSIFTVKG 188 (233)
Q Consensus 175 ~~~~~~~~~~~i~~ 188 (233)
.+..+.+.++.+..
T Consensus 144 ~~~~~~d~~~~l~~ 157 (163)
T cd03216 144 EVFEIADRVTVLRD 157 (163)
T ss_pred HHHHhCCEEEEEEC
Confidence 46677888888863
No 91
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=8.4e-10 Score=86.56 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCc------ccccccccccccC--CchhhhcceEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSR------LQSKRPYLSQSID--PSSHVFKLIQMKYVED 88 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~------l~~~~~~~~~~~~--~~~~~~~~i~~~~~~~ 88 (233)
.+|..+.|.||+|||||||++.++.... ...+.+. ++.+.. +.....++.+... ....+.+++. ++.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~-~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~---LS~ 98 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIK-VLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK---LSG 98 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEE-ECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh---cCH
Confidence 6999999999999999999998876544 2233333 322210 0000111111100 1112222222 333
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCC
Q 041690 89 DEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGN 168 (233)
Q Consensus 89 ~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~ 168 (233)
.+..+-.+..+- -..|+++++||+++-++.. .+.. +.+.+..+.+++.+++++++..
T Consensus 99 G~~qrv~laral--~~~p~illlDEPt~~LD~~-------------~~~~-----l~~~l~~~~~~g~tiii~th~~--- 155 (173)
T cd03230 99 GMKQRLALAQAL--LHDPELLILDEPTSGLDPE-------------SRRE-----FWELLRELKKEGKTILLSSHIL--- 155 (173)
T ss_pred HHHHHHHHHHHH--HcCCCEEEEeCCccCCCHH-------------HHHH-----HHHHHHHHHHCCCEEEEECCCH---
Confidence 444444444433 2239999999999999841 1112 5666666656666666665532
Q ss_pred CchhHHHHHHhhccceEEEe
Q 041690 169 STRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~ 188 (233)
..+..+.+.++.+..
T Consensus 156 -----~~~~~~~d~i~~l~~ 170 (173)
T cd03230 156 -----EEAERLCDRVAILNN 170 (173)
T ss_pred -----HHHHHhCCEEEEEeC
Confidence 156677888888763
No 92
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.14 E-value=8.4e-10 Score=86.88 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=74.1
Q ss_pred cCCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHH
Q 041690 15 ETHVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKK 94 (233)
Q Consensus 15 ~~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 94 (233)
..++|..+.|.||+|+|||||++.++.... ...+.+.| ... ......+... ++..+..+-
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~-~g~-----~i~~~~q~~~-------------LSgGq~qrv 80 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEW-DGI-----TPVYKPQYID-------------LSGGELQRV 80 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEE-CCE-----EEEEEcccCC-------------CCHHHHHHH
Confidence 347999999999999999999998776544 33334433 211 0111111100 222444333
Q ss_pred HHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcC-CcEEEEeecCCCCCchhH
Q 041690 95 YFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKS-PCKLLLSDTHLGNSTRLL 173 (233)
Q Consensus 95 ~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~vlvi~~~~~~~~~~~~ 173 (233)
.++.+- -..|+++++||+++-++.. .+.. +.+.+..+++++ .+++++++..
T Consensus 81 ~laral--~~~p~lllLDEPts~LD~~-------------~~~~-----l~~~l~~~~~~~~~tiiivsH~~-------- 132 (177)
T cd03222 81 AIAAAL--LRNATFYLFDEPSAYLDIE-------------QRLN-----AARAIRRLSEEGKKTALVVEHDL-------- 132 (177)
T ss_pred HHHHHH--hcCCCEEEEECCcccCCHH-------------HHHH-----HHHHHHHHHHcCCCEEEEEECCH--------
Confidence 343333 2239999999999999831 1111 555565555554 6666665532
Q ss_pred HHHHHhhccceEEEe
Q 041690 174 YIYKRWISSIFTVKG 188 (233)
Q Consensus 174 ~~~~~~~~~~~~i~~ 188 (233)
..+.++.+.++.+..
T Consensus 133 ~~~~~~~d~i~~l~~ 147 (177)
T cd03222 133 AVLDYLSDRIHVFEG 147 (177)
T ss_pred HHHHHhCCEEEEEcC
Confidence 156677888888875
No 93
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.13 E-value=1.4e-10 Score=92.25 Aligned_cols=136 Identities=21% Similarity=0.258 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc---------CCCeEEEEecCCcccccccccccccCCc-----hhhhc---
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ---------SNANVVFMCNRSRLQSKRPYLSQSIDPS-----SHVFK--- 79 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~---------~g~~v~yi~~e~~l~~~~~~~~~~~~~~-----~~~~~--- 79 (233)
.+|..++|+||||+|||+++.+++...+.. .+.+|+|++.|........++....... ....+
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~ 109 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSN 109 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccc
Confidence 589999999999999999999999988831 4678999998853322222222111110 00100
Q ss_pred --ceEEEEe-----cCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHh-
Q 041690 80 --LIQMKYV-----EDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHA- 151 (233)
Q Consensus 80 --~i~~~~~-----~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l- 151 (233)
.+.+... .....+..+.+.+... ..+++||||.+..+.... ....... ..+++.+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lvviD~l~~~~~~~-------~~~~~~~------~~~~~~l~~la 175 (193)
T PF13481_consen 110 WGCIRLFEPDSGGPLLDEDLEELEAALKEL-YGPDLVVIDPLQSLHDGD-------ENSNSAV------AQLMQELKRLA 175 (193)
T ss_dssp E-EE---TTS---TTSHHHHHHHHHHHTT-----SEEEEE-GGGG--S--------TT-HHHH------HHHHHHHHHHH
T ss_pred cccceeeecccccccchHHHHHHHHHHhhc-CCCcEEEEcCHHHHhcCC-------CCCHHHH------HHHHHHHHHHH
Confidence 1111000 0133455555555431 339999999999999831 1111111 1134444443
Q ss_pred hhcCCcEEEEeecCC
Q 041690 152 NKKSPCKLLLSDTHL 166 (233)
Q Consensus 152 ~~~~~~vlvi~~~~~ 166 (233)
++.+.+++++.+++.
T Consensus 176 ~~~~~~vi~v~H~~K 190 (193)
T PF13481_consen 176 KEYGVAVILVHHTNK 190 (193)
T ss_dssp HHH--EEEEEEEE--
T ss_pred HHcCCEEEEEECCCC
Confidence 345777777777654
No 94
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.11 E-value=2e-09 Score=79.83 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccc-cccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLS-QSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
++..++|+||||||||++++.++.... ..+..++|++.+........... ... ................+
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 71 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELG-PPGGGVIYIDGEDILEEVLDQLLLIIV--------GGKKASGSGELRLRLAL 71 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC-CCCCCEEEECCEEccccCHHHHHhhhh--------hccCCCCCHHHHHHHHH
Confidence 357899999999999999999887666 33346888875531111100000 000 00000111134455555
Q ss_pred HHhcccCCCCcEEEEeCCCccccc
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDD 120 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~ 120 (233)
..+.. ..+++|+|||+..+...
T Consensus 72 ~~~~~--~~~~viiiDei~~~~~~ 93 (148)
T smart00382 72 ALARK--LKPDVLILDEITSLLDA 93 (148)
T ss_pred HHHHh--cCCCEEEEECCcccCCH
Confidence 55542 22799999999999884
No 95
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.10 E-value=1.7e-09 Score=90.33 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc---CCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ---SNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKK 94 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~---~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 94 (233)
....++|+||||||||++|+.++..+... ....+++++. ..+.....+. ....+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~-------~~l~~~~~g~--------------~~~~~~~ 99 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER-------ADLVGEYIGH--------------TAQKTRE 99 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH-------HHhhhhhccc--------------hHHHHHH
Confidence 45678999999999999999998765411 1234444431 1111111111 1445566
Q ss_pred HHHHhcccCCCCcEEEEeCCCcccc
Q 041690 95 YFAAFHQHDKIPTAVVVDDFGDLFD 119 (233)
Q Consensus 95 ~~~~~~~~~~~p~iIvIDei~~~~~ 119 (233)
++..+. ..+|||||++.+.+
T Consensus 100 ~~~~a~-----~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 100 VIKKAL-----GGVLFIDEAYSLAR 119 (261)
T ss_pred HHHhcc-----CCEEEEechhhhcc
Confidence 666443 67999999998864
No 96
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.09 E-value=1.5e-09 Score=85.50 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCC--ccc-------ccccccccccC--CchhhhcceEEEE
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRS--RLQ-------SKRPYLSQSID--PSSHVFKLIQMKY 85 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~--~l~-------~~~~~~~~~~~--~~~~~~~~i~~~~ 85 (233)
++|..+.|.||+|+|||||++.++.... ...+.+. ++... ... ....++.+... ....+.+++...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~- 100 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSIL-IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG- 100 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEE-ECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec-
Confidence 6999999999999999999998876544 3333333 32211 000 00011111100 111222333221
Q ss_pred ecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhc-CCcEEEEeec
Q 041690 86 VEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKK-SPCKLLLSDT 164 (233)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~vlvi~~~ 164 (233)
++.++..+-.+..+- -..|+++++||+++-++. ..+.. +++.+..++++ +.+++++++.
T Consensus 101 lS~G~~qr~~la~al--~~~p~llilDEP~~~LD~-------------~~~~~-----l~~~l~~~~~~~~~tiii~sH~ 160 (178)
T cd03229 101 LSGGQQQRVALARAL--AMDPDVLLLDEPTSALDP-------------ITRRE-----VRALLKSLQAQLGITVVLVTHD 160 (178)
T ss_pred CCHHHHHHHHHHHHH--HCCCCEEEEeCCcccCCH-------------HHHHH-----HHHHHHHHHHhcCCEEEEEeCC
Confidence 444554444444433 223999999999999983 11112 55666666565 5666666553
Q ss_pred CCCCCchhHHHHHHhhccceEEE
Q 041690 165 HLGNSTRLLYIYKRWISSIFTVK 187 (233)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~i~ 187 (233)
.. .++.+.+.++.+.
T Consensus 161 ~~--------~~~~~~d~i~~l~ 175 (178)
T cd03229 161 LD--------EAARLADRVVVLR 175 (178)
T ss_pred HH--------HHHHhcCEEEEEe
Confidence 21 5667788887775
No 97
>CHL00181 cbbX CbbX; Provisional
Probab=99.09 E-value=1.3e-09 Score=92.17 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=48.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc---CCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ---SNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIK 93 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~---~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 93 (233)
.+|..++|+||||||||++|+.++..+... ...++++++ .........+.. .....
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~-------~~~l~~~~~g~~--------------~~~~~ 115 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT-------RDDLVGQYIGHT--------------APKTK 115 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec-------HHHHHHHHhccc--------------hHHHH
Confidence 367789999999999999999998876521 123466664 111221111111 23344
Q ss_pred HHHHHhcccCCCCcEEEEeCCCcccc
Q 041690 94 KYFAAFHQHDKIPTAVVVDDFGDLFD 119 (233)
Q Consensus 94 ~~~~~~~~~~~~p~iIvIDei~~~~~ 119 (233)
.++..+. ..+|||||++.+..
T Consensus 116 ~~l~~a~-----ggVLfIDE~~~l~~ 136 (287)
T CHL00181 116 EVLKKAM-----GGVLFIDEAYYLYK 136 (287)
T ss_pred HHHHHcc-----CCEEEEEccchhcc
Confidence 5555432 67999999998865
No 98
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.09 E-value=1.8e-09 Score=84.74 Aligned_cols=137 Identities=14% Similarity=0.105 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcc-------cccccccccccC-CchhhhcceEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRL-------QSKRPYLSQSID-PSSHVFKLIQMKYVED 88 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l-------~~~~~~~~~~~~-~~~~~~~~i~~~~~~~ 88 (233)
.+|..+.|.||+|+|||||++.++.... ...+.+ +++.+... .....++.+... ....+.+++ ++.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i-~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l----LS~ 99 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR-PTSGRV-RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----LSG 99 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeE-EECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC----cCH
Confidence 6999999999999999999998886554 333333 33322100 000011111100 001222232 344
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCC
Q 041690 89 DEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGN 168 (233)
Q Consensus 89 ~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~ 168 (233)
.+..+-.+..+-. ..|+++++||+++-++.. .+.. +++.+..+++++.+++++++...
T Consensus 100 G~~qrv~la~al~--~~p~~lllDEPt~~LD~~-------------~~~~-----l~~~l~~~~~~~~tii~~sh~~~-- 157 (173)
T cd03246 100 GQRQRLGLARALY--GNPRILVLDEPNSHLDVE-------------GERA-----LNQAIAALKAAGATRIVIAHRPE-- 157 (173)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEECCccccCHH-------------HHHH-----HHHHHHHHHhCCCEEEEEeCCHH--
Confidence 4444444444332 239999999999999841 1111 55666666556777776655321
Q ss_pred CchhHHHHHHhhccceEEEe
Q 041690 169 STRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~ 188 (233)
.++ +.+.++.+..
T Consensus 158 ------~~~-~~d~v~~l~~ 170 (173)
T cd03246 158 ------TLA-SADRILVLED 170 (173)
T ss_pred ------HHH-hCCEEEEEEC
Confidence 333 5787777763
No 99
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.09 E-value=8.1e-10 Score=93.43 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcC---CCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQS---NANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKK 94 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~---g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 94 (233)
++..++|+||||||||++|+.++..+.... ..++++++.. ..+....+.. ...+..
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~-------~l~~~~~g~~--------------~~~~~~ 115 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD-------DLVGQYIGHT--------------APKTKE 115 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH-------HHhHhhcccc--------------hHHHHH
Confidence 566899999999999999998887776221 2356666421 1111111111 344556
Q ss_pred HHHHhcccCCCCcEEEEeCCCcccc
Q 041690 95 YFAAFHQHDKIPTAVVVDDFGDLFD 119 (233)
Q Consensus 95 ~~~~~~~~~~~p~iIvIDei~~~~~ 119 (233)
++..+. ..+|||||++.+..
T Consensus 116 ~~~~a~-----~gvL~iDEi~~L~~ 135 (284)
T TIGR02880 116 ILKRAM-----GGVLFIDEAYYLYR 135 (284)
T ss_pred HHHHcc-----CcEEEEechhhhcc
Confidence 666442 68999999998764
No 100
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.08 E-value=2.5e-09 Score=83.60 Aligned_cols=144 Identities=17% Similarity=0.282 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC-Cccc-ccccccccccC---------CchhhhcceEE-
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR-SRLQ-SKRPYLSQSID---------PSSHVFKLIQM- 83 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e-~~l~-~~~~~~~~~~~---------~~~~~~~~i~~- 83 (233)
.++|+.+.|.||+|+|||||++.+..... ...+++.+-... ..+. ...+++.+..+ ....+.+|+.+
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~e~-pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGEER-PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhhhc-CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 37999999999999999999998876555 333333332211 0000 01111111110 11111222211
Q ss_pred --------------------------------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcc
Q 041690 84 --------------------------------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPR 131 (233)
Q Consensus 84 --------------------------------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~ 131 (233)
..++..+..+-.++.+. -+.|.+++-||++.-++.
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi--V~~P~vLlADEPTGNLDp----------- 170 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI--VNQPAVLLADEPTGNLDP----------- 170 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH--ccCCCeEeecCCCCCCCh-----------
Confidence 22344556665555544 334999999999998883
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 132 GRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 132 ~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+..+. +|+++..++..|.+|+|.++... ++..+-..++.+..
T Consensus 171 --~~s~~-----im~lfeeinr~GtTVl~ATHd~~--------lv~~~~~rvl~l~~ 212 (223)
T COG2884 171 --DLSWE-----IMRLFEEINRLGTTVLMATHDLE--------LVNRMRHRVLALED 212 (223)
T ss_pred --HHHHH-----HHHHHHHHhhcCcEEEEEeccHH--------HHHhccCcEEEEeC
Confidence 33333 88888889898988877765321 55555556666664
No 101
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=99.08 E-value=6.6e-10 Score=91.36 Aligned_cols=144 Identities=20% Similarity=0.242 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEecCCccccccc-----ccccccCCchh--hhcc----
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCNRSRLQSKRP-----YLSQSIDPSSH--VFKL---- 80 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~e~~l~~~~~-----~~~~~~~~~~~--~~~~---- 80 (233)
.-+.++.|+|.+|||||.|++|++..+... -|+.++||+||..|...+- .+++.-..... ..+|
T Consensus 100 ~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~~~rp~~~~~~~~~~Npgd~ 179 (351)
T KOG1564|consen 100 PTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTLPQRPNPEKELNYNDNPGDH 179 (351)
T ss_pred ccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHHhcccCCCcchhhhhccCCCce
Confidence 366788999999999999999998876532 2688999999976655441 11111011110 0112
Q ss_pred eEEEEecCHHHHHHHHHHhc---ccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCc
Q 041690 81 IQMKYVEDDEEIKKYFAAFH---QHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPC 157 (233)
Q Consensus 81 i~~~~~~~~~~l~~~~~~~~---~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~ 157 (233)
|.+....+.+.+........ .......+|||||+.+.++......++ ......+.|..+-..++.++.+...
T Consensus 180 IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~fR~E~d~~~S-----dl~~r~~~l~rla~~Lr~LA~~~~~ 254 (351)
T KOG1564|consen 180 IFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALFRSEFDYNPS-----DLKKRARHLFRLAGKLRQLASKFDL 254 (351)
T ss_pred EEEEeccchhhHHHHHhhhccceeccCcceEEEEehhhHHHHHHhccChh-----hhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 44444444443333333211 113448999999999999975332221 1113345556666777777777777
Q ss_pred EEEEeecC
Q 041690 158 KLLLSDTH 165 (233)
Q Consensus 158 vlvi~~~~ 165 (233)
.+|++++-
T Consensus 255 aVV~~NQV 262 (351)
T KOG1564|consen 255 AVVCANQV 262 (351)
T ss_pred cEEEeecc
Confidence 77777663
No 102
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.05 E-value=3.2e-09 Score=82.74 Aligned_cols=130 Identities=18% Similarity=0.304 Sum_probs=74.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-------CeEEEEecCCcccccccccccccCCchhhhcceEE---EEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSN-------ANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQM---KYV 86 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-------~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~---~~~ 86 (233)
.+|..+.|.||+|||||||++.++.......| ..+.|+..+..+ ....+.+++.. ..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~------------~~~tv~~nl~~~~~~~L 92 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL------------PLGTLREQLIYPWDDVL 92 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc------------ccccHHHHhhccCCCCC
Confidence 79999999999999999999988765542222 223344322100 11133334322 234
Q ss_pred cCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCC
Q 041690 87 EDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHL 166 (233)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~ 166 (233)
+..+..+-.+..+-. ..|+++++||+++-++.. .... +.+.+..+ +.+++++++..
T Consensus 93 S~G~~~rv~laral~--~~p~~lllDEPt~~LD~~-------------~~~~-----l~~~l~~~---~~tiiivsh~~- 148 (166)
T cd03223 93 SGGEQQRLAFARLLL--HKPKFVFLDEATSALDEE-------------SEDR-----LYQLLKEL---GITVISVGHRP- 148 (166)
T ss_pred CHHHHHHHHHHHHHH--cCCCEEEEECCccccCHH-------------HHHH-----HHHHHHHh---CCEEEEEeCCh-
Confidence 445544444444332 239999999999999841 1111 33444333 45666665542
Q ss_pred CCCchhHHHHHHhhccceEEEecC
Q 041690 167 GNSTRLLYIYKRWISSIFTVKGDG 190 (233)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~ 190 (233)
. .. .+.+.++.+...+
T Consensus 149 -~------~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 149 -S------LW-KFHDRVLDLDGEG 164 (166)
T ss_pred -h------HH-hhCCEEEEEcCCC
Confidence 1 22 4788888887643
No 103
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.05 E-value=1.7e-09 Score=85.31 Aligned_cols=140 Identities=13% Similarity=0.177 Sum_probs=76.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccc-------cccccccc---CCchhhhcceEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSK-------RPYLSQSI---DPSSHVFKLIQMKYV 86 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~-------~~~~~~~~---~~~~~~~~~i~~~~~ 86 (233)
.+|..+.|.||+|+|||||++.++.... ...+.+ ++......... ..++.+.+ +..+. .+ -....+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v-~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~-~~-~~~~~L 98 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEI-LLDGKDLASLSPKELARKIAYVPQALELLGLAHL-AD-RPFNEL 98 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEE-EECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhH-hc-CCcccC
Confidence 6999999999999999999998876544 333444 44332100000 01111100 10000 00 011233
Q ss_pred cCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhc-CCcEEEEeecC
Q 041690 87 EDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKK-SPCKLLLSDTH 165 (233)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~vlvi~~~~ 165 (233)
+..+..+-.+..+-. ..|+++++||+++-++.. ... .+++.+..++++ +.+++++++..
T Consensus 99 S~G~~qrl~laral~--~~p~llllDEP~~~LD~~-------------~~~-----~~~~~l~~~~~~~~~tiii~sh~~ 158 (180)
T cd03214 99 SGGERQRVLLARALA--QEPPILLLDEPTSHLDIA-------------HQI-----ELLELLRRLARERGKTVVMVLHDL 158 (180)
T ss_pred CHHHHHHHHHHHHHh--cCCCEEEEeCCccCCCHH-------------HHH-----HHHHHHHHHHHhcCCEEEEEeCCH
Confidence 444444444443332 239999999999999831 111 155566655555 66666665532
Q ss_pred CCCCchhHHHHHHhhccceEEEe
Q 041690 166 LGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
. .+..+.+.++.+..
T Consensus 159 ~--------~~~~~~d~~~~l~~ 173 (180)
T cd03214 159 N--------LAARYADRVILLKD 173 (180)
T ss_pred H--------HHHHhCCEEEEEEC
Confidence 1 45677888888874
No 104
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.05 E-value=2.3e-09 Score=88.22 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+..++|+||||||||+|+..++.... ..|.++.|++
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~v~y~~ 80 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELS-QRGRAVGYVP 80 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEE
Confidence 456899999999999999999988777 5688999996
No 105
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.03 E-value=1.6e-09 Score=85.68 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=76.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccc--------ccccccccc-----cCCchhhhcceE
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQ--------SKRPYLSQS-----IDPSSHVFKLIQ 82 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~--------~~~~~~~~~-----~~~~~~~~~~i~ 82 (233)
.++|..+.|.||+|+|||||++.++.... ...+.+ +++.+.... ....++.+. +.....+.+++.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i-~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~ 100 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRP-PASGEI-TLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceE-EECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence 36999999999999999999998876544 223333 333221000 001111111 001112222222
Q ss_pred EE-EecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEE
Q 041690 83 MK-YVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLL 161 (233)
Q Consensus 83 ~~-~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi 161 (233)
.. .++..+..+-.++.+- -..|+++++||+++-++.. .+.. +.+.+..+.+++.+++++
T Consensus 101 ~~~~LS~G~~qrl~la~al--~~~p~llllDEP~~~LD~~-------------~~~~-----l~~~l~~~~~~~~tiii~ 160 (182)
T cd03215 101 LSSLLSGGNQQKVVLARWL--ARDPRVLILDEPTRGVDVG-------------AKAE-----IYRLIRELADAGKAVLLI 160 (182)
T ss_pred HHhhcCHHHHHHHHHHHHH--ccCCCEEEECCCCcCCCHH-------------HHHH-----HHHHHHHHHHCCCEEEEE
Confidence 11 1333443333344333 2239999999999999841 1111 555666555556666666
Q ss_pred eecCCCCCchhHHHHHHhhccceEEE
Q 041690 162 SDTHLGNSTRLLYIYKRWISSIFTVK 187 (233)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~i~ 187 (233)
++.. ..+.++.+.++.+.
T Consensus 161 sh~~--------~~~~~~~d~v~~l~ 178 (182)
T cd03215 161 SSEL--------DELLGLCDRILVMY 178 (182)
T ss_pred eCCH--------HHHHHhCCEEEEec
Confidence 5532 14667778877775
No 106
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.03 E-value=1.5e-09 Score=83.27 Aligned_cols=36 Identities=25% Similarity=0.509 Sum_probs=28.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEE
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVF 53 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~y 53 (233)
.+|..++|.||+|||||||.+++|.... ...+.++|
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lis-p~~G~l~f 62 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLIS-PTSGTLLF 62 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccC-CCCceEEE
Confidence 6999999999999999999999986555 33333333
No 107
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.02 E-value=1.5e-09 Score=88.99 Aligned_cols=57 Identities=5% Similarity=0.147 Sum_probs=40.8
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhc-CCcEEEEeecCCCCCchhHHHHHHhhccce
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKK-SPCKLLLSDTHLGNSTRLLYIYKRWISSIF 184 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~ 184 (233)
|+++++||+++.++.. .+.. +++.+..++.. +.+++++++.- ..+..+.+.++
T Consensus 157 P~iliLDEPta~LD~~-------------~~~~-----l~~~l~~L~~~~~~tii~~tHd~--------~~~~~~ad~v~ 210 (235)
T COG1122 157 PEILLLDEPTAGLDPK-------------GRRE-----LLELLKKLKEEGGKTIIIVTHDL--------ELVLEYADRVV 210 (235)
T ss_pred CCEEEEcCCCCCCCHH-------------HHHH-----HHHHHHHHHhcCCCeEEEEeCcH--------HHHHhhCCEEE
Confidence 9999999999999841 1112 67777777777 46777775532 26677788888
Q ss_pred EEEe
Q 041690 185 TVKG 188 (233)
Q Consensus 185 ~i~~ 188 (233)
.+..
T Consensus 211 vl~~ 214 (235)
T COG1122 211 VLDD 214 (235)
T ss_pred EEEC
Confidence 8885
No 108
>PRK08727 hypothetical protein; Validated
Probab=99.02 E-value=6.2e-09 Score=85.60 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
....++|+||+|||||+|+..++.... +.|.++.|++
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~-~~~~~~~y~~ 76 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAE-QAGRSSAYLP 76 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEe
Confidence 345699999999999999999998877 6688999996
No 109
>PRK04296 thymidine kinase; Provisional
Probab=99.02 E-value=1.4e-08 Score=80.95 Aligned_cols=136 Identities=13% Similarity=0.072 Sum_probs=74.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccc--ccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRP--YLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
|.+++++||||+||||++.+++.... ..|.+|+++.+. +..+.. .+...++. .+.-........+...+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~-~~g~~v~i~k~~--~d~~~~~~~i~~~lg~------~~~~~~~~~~~~~~~~~ 72 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE-ERGMKVLVFKPA--IDDRYGEGKVVSRIGL------SREAIPVSSDTDIFELI 72 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH-HcCCeEEEEecc--ccccccCCcEecCCCC------cccceEeCChHHHHHHH
Confidence 67899999999999999999998887 568888887431 111110 01000110 00001112222222222
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCC-ch-hHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNS-TR-LLY 174 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~-~~-~~~ 174 (233)
.. ....+++|+|||++- ++. . + +.++++.++..+..+++++....-.. +- ...
T Consensus 73 ~~---~~~~~dvviIDEaq~-l~~------------~----~-----v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~ 127 (190)
T PRK04296 73 EE---EGEKIDCVLIDEAQF-LDK------------E----Q-----VVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSP 127 (190)
T ss_pred Hh---hCCCCCEEEEEcccc-CCH------------H----H-----HHHHHHHHHHcCCeEEEEecCcccccCcCchHH
Confidence 22 233489999999954 331 0 1 34455556677888877766532111 00 111
Q ss_pred HHHHhhccceEEEe
Q 041690 175 IYKRWISSIFTVKG 188 (233)
Q Consensus 175 ~~~~~~~~~~~i~~ 188 (233)
-+-.+.|.+..+..
T Consensus 128 ~L~~~aD~V~~l~~ 141 (190)
T PRK04296 128 YLLALADKVTELKA 141 (190)
T ss_pred HHHHhcCeEEEeeE
Confidence 34567777777765
No 110
>PRK08181 transposase; Validated
Probab=99.01 E-value=2.5e-09 Score=89.46 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
..+..++|+||||||||+|+..++..++ ..|.+|+|++
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~~g~~v~f~~ 141 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALI-ENGWRVLFTR 141 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHH-HcCCceeeee
Confidence 4678899999999999999999998887 6789999996
No 111
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.00 E-value=7.1e-09 Score=78.95 Aligned_cols=118 Identities=17% Similarity=0.168 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+|..+.|.||+|+|||||++.++.... ...+. ++++.. ....++.+ ++..+..+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~-i~~~~~----~~i~~~~~----------------lS~G~~~rv~l 81 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGI-VTWGST----VKIGYFEQ----------------LSGGEKMRLAL 81 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC-CCceE-EEECCe----EEEEEEcc----------------CCHHHHHHHHH
Confidence 7999999999999999999998766443 22222 333211 00000111 22233333333
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+- -..|+++++||+.+-++.. .+.. +.+.++.+ +.+++++++... ..
T Consensus 82 aral--~~~p~illlDEP~~~LD~~-------------~~~~-----l~~~l~~~---~~til~~th~~~--------~~ 130 (144)
T cd03221 82 AKLL--LENPNLLLLDEPTNHLDLE-------------SIEA-----LEEALKEY---PGTVILVSHDRY--------FL 130 (144)
T ss_pred HHHH--hcCCCEEEEeCCccCCCHH-------------HHHH-----HHHHHHHc---CCEEEEEECCHH--------HH
Confidence 3332 2239999999999999831 1111 44455443 345666554321 45
Q ss_pred HHhhccceEEE
Q 041690 177 KRWISSIFTVK 187 (233)
Q Consensus 177 ~~~~~~~~~i~ 187 (233)
..+.+.++.+.
T Consensus 131 ~~~~d~v~~l~ 141 (144)
T cd03221 131 DQVATKIIELE 141 (144)
T ss_pred HHhCCEEEEEe
Confidence 56677777765
No 112
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.00 E-value=1.6e-09 Score=87.34 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=38.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
+-..+++|||||+||||||..+|. +.+.++.+++. +. +.. ..++..++.
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~----e~~~~~~~~sg-------~~-i~k-------------------~~dl~~il~ 97 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIAN----ELGVNFKITSG-------PA-IEK-------------------AGDLAAILT 97 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHH----HCT--EEEEEC-------CC---S-------------------CHHHHHHHH
T ss_pred CcceEEEECCCccchhHHHHHHHh----ccCCCeEeccc-------hh-hhh-------------------HHHHHHHHH
Confidence 456899999999999999998777 44455655541 10 000 223344444
Q ss_pred HhcccCCCCcEEEEeCCCcccc
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFD 119 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~ 119 (233)
.+. + .+++|||||..+-.
T Consensus 98 ~l~--~--~~ILFIDEIHRlnk 115 (233)
T PF05496_consen 98 NLK--E--GDILFIDEIHRLNK 115 (233)
T ss_dssp T----T--T-EEEECTCCC--H
T ss_pred hcC--C--CcEEEEechhhccH
Confidence 332 2 67999999999876
No 113
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.00 E-value=2.7e-09 Score=86.57 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 114
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.99 E-value=5.7e-09 Score=82.20 Aligned_cols=139 Identities=12% Similarity=0.039 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcc------cccccccccccC-CchhhhcceEEEEecCH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRL------QSKRPYLSQSID-PSSHVFKLIQMKYVEDD 89 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l------~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~ 89 (233)
++|..+.|.||+|||||||++.++.... ...+.+ +++..... .....++.+... ....+.+++ ...++..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i-~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i-~~~LS~G 102 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLK-PQQGEI-TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL-GRRFSGG 102 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCEE-EECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh-cccCCHH
Confidence 7999999999999999999998887554 323333 33322100 000011111100 011222233 2334444
Q ss_pred HHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCC
Q 041690 90 EEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNS 169 (233)
Q Consensus 90 ~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~ 169 (233)
+..+-.+..+-. ..|+++++||+++-++.. .+.. +++.+..+. ++.+++++++...
T Consensus 103 ~~qrv~laral~--~~p~~lllDEP~~~LD~~-------------~~~~-----l~~~l~~~~-~~~tii~~sh~~~--- 158 (178)
T cd03247 103 ERQRLALARILL--QDAPIVLLDEPTVGLDPI-------------TERQ-----LLSLIFEVL-KDKTLIWITHHLT--- 158 (178)
T ss_pred HHHHHHHHHHHh--cCCCEEEEECCcccCCHH-------------HHHH-----HHHHHHHHc-CCCEEEEEecCHH---
Confidence 544444444332 239999999999999841 1111 556665554 4666666654321
Q ss_pred chhHHHHHHhhccceEEEe
Q 041690 170 TRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 170 ~~~~~~~~~~~~~~~~i~~ 188 (233)
.++ +.+.++.+..
T Consensus 159 -----~~~-~~d~~~~l~~ 171 (178)
T cd03247 159 -----GIE-HMDKILFLEN 171 (178)
T ss_pred -----HHH-hCCEEEEEEC
Confidence 233 4677777763
No 115
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.99 E-value=3.9e-09 Score=84.97 Aligned_cols=29 Identities=28% Similarity=0.172 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|||||||++.++....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 37999999999999999999998876543
No 116
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.98 E-value=4.2e-09 Score=85.23 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 7999999999999999999998876543
No 117
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.98 E-value=6.2e-09 Score=84.34 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhc-CCcEEEEeecCC
Q 041690 88 DDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKK-SPCKLLLSDTHL 166 (233)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~vlvi~~~~~ 166 (233)
.++..+-.++.+- ...|+++++||+++.++. ..+ +.+++++..+++. +.+.++|++.-
T Consensus 144 GGQ~QRiaIARAL--~~~PklLIlDEptSaLD~---------------siQ---a~IlnlL~~l~~~~~lt~l~IsHdl- 202 (252)
T COG1124 144 GGQRQRIAIARAL--IPEPKLLILDEPTSALDV---------------SVQ---AQILNLLLELKKERGLTYLFISHDL- 202 (252)
T ss_pred hhHHHHHHHHHHh--ccCCCEEEecCchhhhcH---------------HHH---HHHHHHHHHHHHhcCceEEEEeCcH-
Confidence 3444444444443 223999999999999983 122 2267777776655 55666676532
Q ss_pred CCCchhHHHHHHhhccceEEEe
Q 041690 167 GNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
-+.++++++++.++.
T Consensus 203 -------~~v~~~cdRi~Vm~~ 217 (252)
T COG1124 203 -------ALVEHMCDRIAVMDN 217 (252)
T ss_pred -------HHHHHHhhheeeeeC
Confidence 278999999888885
No 118
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=1.1e-08 Score=78.81 Aligned_cols=132 Identities=12% Similarity=0.139 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEE-EecCHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMK-YVEDDEEIKKY 95 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~~~ 95 (233)
.+|..+.|.||+|+|||||++.++.... ...+. +++..+..... ........+.+. .++..+..+-.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~-i~~~~~~~~~~----------~~~~~~~~i~~~~qlS~G~~~r~~ 90 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGE-ILIDGKDIAKL----------PLEELRRRIGYVPQLSGGQRQRVA 90 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccE-EEECCEEcccC----------CHHHHHhceEEEeeCCHHHHHHHH
Confidence 6999999999999999999998876544 22333 34442210000 000001112111 13434444433
Q ss_pred HHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHH
Q 041690 96 FAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYI 175 (233)
Q Consensus 96 ~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~ 175 (233)
+..+-. ..|+++++||+++-++.. .+. .+.+.+...+..+.+++++++.. ..
T Consensus 91 l~~~l~--~~~~i~ilDEp~~~lD~~-------------~~~-----~l~~~l~~~~~~~~tii~~sh~~--------~~ 142 (157)
T cd00267 91 LARALL--LNPDLLLLDEPTSGLDPA-------------SRE-----RLLELLRELAEEGRTVIIVTHDP--------EL 142 (157)
T ss_pred HHHHHh--cCCCEEEEeCCCcCCCHH-------------HHH-----HHHHHHHHHHHCCCEEEEEeCCH--------HH
Confidence 443332 239999999999999831 111 15555655555556666665542 15
Q ss_pred HHHhhccceEEEe
Q 041690 176 YKRWISSIFTVKG 188 (233)
Q Consensus 176 ~~~~~~~~~~i~~ 188 (233)
.+.+++.++.+..
T Consensus 143 ~~~~~d~i~~l~~ 155 (157)
T cd00267 143 AELAADRVIVLKD 155 (157)
T ss_pred HHHhCCEEEEEeC
Confidence 5666788877763
No 119
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=98.97 E-value=6.5e-09 Score=89.43 Aligned_cols=159 Identities=16% Similarity=0.323 Sum_probs=89.7
Q ss_pred ccccccccccccccCCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCC---cccccccccccccCCchhhh
Q 041690 2 IESFFDGNQVEILETHVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRS---RLQSKRPYLSQSIDPSSHVF 78 (233)
Q Consensus 2 ~~~ff~~~~~~~~~~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~---~l~~~~~~~~~~~~~~~~~~ 78 (233)
|++||..+ .|...||-|.||||||+|+..+...++. ...++||+++- .++.........++ ...+.
T Consensus 1 ~~~FF~~~--------~G~TLLIKG~PGTGKTtfaLelL~~l~~--~~~v~YISTRVd~d~vy~~y~~~~~~i~-~~~vl 69 (484)
T PF07088_consen 1 IKRFFTQE--------PGQTLLIKGEPGTGKTTFALELLNSLKD--HGNVMYISTRVDQDTVYEMYPWIEESID-PTNVL 69 (484)
T ss_pred CchhhcCC--------CCcEEEEecCCCCCceeeehhhHHHHhc--cCCeEEEEeccCHHHHHHhhhhhccccC-hhhhh
Confidence 57899888 9999999999999999999999887772 46799999871 11111100000000 00000
Q ss_pred c----ceE-------EEEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHH
Q 041690 79 K----LIQ-------MKYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNA 147 (233)
Q Consensus 79 ~----~i~-------~~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 147 (233)
+ .+. ..+-...+.+..+++.+.... ...+|++||.++++.... .+.+.+.+ .. ....++
T Consensus 70 DatQd~~~~~~~~~vp~~~l~~ds~~~f~~~i~~~~-k~~iI~~DSWdaiieyla--~~~~~~ed--~e-----~l~~dL 139 (484)
T PF07088_consen 70 DATQDPFELPLDKDVPFERLDIDSFRDFVDKINEAG-KKPIIAFDSWDAIIEYLA--EEHDEPED--IE-----TLTNDL 139 (484)
T ss_pred hhccchhhccccccCcccccCHHHHHHHHHHhhhcc-cCcEEEEecHHHHHHHhh--hhhcCcHH--HH-----HHHHHH
Confidence 0 000 011112445666666443222 256999999777666321 11111111 11 113344
Q ss_pred HHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceEEE
Q 041690 148 ITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVK 187 (233)
Q Consensus 148 ~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~ 187 (233)
+..+...+..++++.++.... .+++++|-|+.+.
T Consensus 140 v~lard~g~~LIlVsEsa~~~------~LdYivDGVVTL~ 173 (484)
T PF07088_consen 140 VELARDMGINLILVSESAENE------PLDYIVDGVVTLQ 173 (484)
T ss_pred HHHHhhcCceEEEEEecCCCC------cchheeeeEEEEE
Confidence 434456678888888876544 4677788777775
No 120
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.97 E-value=4.3e-09 Score=85.46 Aligned_cols=28 Identities=32% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6999999999999999999998876544
No 121
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.96 E-value=9.8e-09 Score=83.64 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=25.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|||||||++.+|.-..
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37999999999999999999998875443
No 122
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.96 E-value=5.5e-09 Score=81.62 Aligned_cols=124 Identities=12% Similarity=0.177 Sum_probs=68.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccc-ccccccccCCchhhhcceEEEEecCHHHHHHHHHHh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSK-RPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFAAF 99 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 99 (233)
.++|.|+||||||++|.+++.. .+.+++|+.+...+... ..++....... .-.+...+....+.+.+...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI~~H~~~R-----~~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIARHRKRR-----PAHWRTIETPRDLVSALKEL 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHHHHHHHhC-----CCCceEeecHHHHHHHHHhc
Confidence 3789999999999999998763 56799999876433111 11100000000 00112223344555555422
Q ss_pred cccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeec
Q 041690 100 HQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDT 164 (233)
Q Consensus 100 ~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~ 164 (233)
. .+++|+||+++.+....... ....-..... ..+..++..+++.+.++++|++-
T Consensus 72 ---~-~~~~VLIDclt~~~~n~l~~----~~~~~~~~~~---~~i~~l~~~l~~~~~~~viVsnE 125 (169)
T cd00544 72 ---D-PGDVVLIDCLTLWVTNLLFA----DLEEWEAAIA---DEIDALLAAVRNKPGTLILVSNE 125 (169)
T ss_pred ---C-CCCEEEEEcHhHHHHHhCCC----ccccchhHHH---HHHHHHHHHHHcCCCcEEEEECC
Confidence 1 37899999999998853211 0000001111 12455666666777777777654
No 123
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.96 E-value=6.6e-09 Score=86.11 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=78.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC------CCeEEEEecCCcccc---cccccccc---cCC----chhhhc
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQS------NANVVFMCNRSRLQS---KRPYLSQS---IDP----SSHVFK 79 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~------g~~v~yi~~e~~l~~---~~~~~~~~---~~~----~~~~~~ 79 (233)
..+|..+.|.||+|||||||++.++....... +..+.|+........ ..+.+... ... ...+++
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 46899999999999999999998876544222 234556554311100 00111000 000 011111
Q ss_pred ceEE--------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHh
Q 041690 80 LIQM--------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHA 151 (233)
Q Consensus 80 ~i~~--------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l 151 (233)
.+.+ ..++.++..+-.++.+- -..|+++++||+++.++.. .+.. +.+.+..+
T Consensus 102 ~l~l~~~~~~~~~~LSgGe~qrv~iaraL--~~~p~llllDEPt~~LD~~-------------~~~~-----l~~~l~~~ 161 (246)
T cd03237 102 PLQIEQILDREVPELSGGELQRVAIAACL--SKDADIYLLDEPSAYLDVE-------------QRLM-----ASKVIRRF 161 (246)
T ss_pred HcCCHHHhhCChhhCCHHHHHHHHHHHHH--hcCCCEEEEeCCcccCCHH-------------HHHH-----HHHHHHHH
Confidence 1111 12233344443444333 2239999999999999841 1112 55556555
Q ss_pred hh-cCCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 152 NK-KSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 152 ~~-~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
.+ .+.+++++++.. ..+..+.+.++.+.+
T Consensus 162 ~~~~~~tiiivsHd~--------~~~~~~~d~i~~l~~ 191 (246)
T cd03237 162 AENNEKTAFVVEHDI--------IMIDYLADRLIVFEG 191 (246)
T ss_pred HHhcCCEEEEEeCCH--------HHHHHhCCEEEEEcC
Confidence 44 366777776542 156777888888865
No 124
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=8.5e-09 Score=80.68 Aligned_cols=135 Identities=13% Similarity=0.157 Sum_probs=71.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccc-------cccccccccC-CchhhhcceEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQS-------KRPYLSQSID-PSSHVFKLIQMKYVED 88 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~-------~~~~~~~~~~-~~~~~~~~i~~~~~~~ 88 (233)
++|..+.|.||+|+|||||++.++.... ...+.+ ++..+..-.. ...++.+... ....+.+++ ++.
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i-~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~l----LS~ 99 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEI-LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----LSG 99 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEE-EECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHh----hCH
Confidence 7999999999999999999998876554 333444 3333210000 0001111000 001122222 333
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCC
Q 041690 89 DEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGN 168 (233)
Q Consensus 89 ~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~ 168 (233)
.+..+-.+..+- -..|+++++||+++-++.. .+. .+++.+..+.+ +.+++++++...
T Consensus 100 G~~~rl~la~al--~~~p~llllDEP~~gLD~~-------------~~~-----~l~~~l~~~~~-~~tii~~sh~~~-- 156 (171)
T cd03228 100 GQRQRIAIARAL--LRDPPILILDEATSALDPE-------------TEA-----LILEALRALAK-GKTVIVIAHRLS-- 156 (171)
T ss_pred HHHHHHHHHHHH--hcCCCEEEEECCCcCCCHH-------------HHH-----HHHHHHHHhcC-CCEEEEEecCHH--
Confidence 443333333332 2239999999999999841 111 15556655543 555665544321
Q ss_pred CchhHHHHHHhhccceEEE
Q 041690 169 STRLLYIYKRWISSIFTVK 187 (233)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~ 187 (233)
.++. .+.++.+.
T Consensus 157 ------~~~~-~d~~~~l~ 168 (171)
T cd03228 157 ------TIRD-ADRIIVLD 168 (171)
T ss_pred ------HHHh-CCEEEEEc
Confidence 2334 67776664
No 125
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.96 E-value=1.4e-08 Score=82.65 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
..+..++|+||||||||+++++++.... ..+.+++|++
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~-~~~~~~~~i~ 73 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAE-ERGKSAIYLP 73 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH-hcCCcEEEEe
Confidence 4678899999999999999999988766 5577889986
No 126
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.96 E-value=8.1e-09 Score=82.51 Aligned_cols=143 Identities=14% Similarity=0.137 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh--hhcCCCeEEEEecCCc----ccccccccccccC--CchhhhcceEE----E
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC--ASQSNANVVFMCNRSR----LQSKRPYLSQSID--PSSHVFKLIQM----K 84 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~--~~~~g~~v~yi~~e~~----l~~~~~~~~~~~~--~~~~~~~~i~~----~ 84 (233)
.+|..+.|.||+|||||||++.++... . ...+.+. ++.+.. ......++.+... ....+.+++.+ .
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-~~~G~i~-~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~ 110 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRRTGL-GVSGEVL-INGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR 110 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCceEEE-ECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc
Confidence 799999999999999999999887655 4 3333333 322210 0000111111110 11122222211 1
Q ss_pred EecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeec
Q 041690 85 YVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDT 164 (233)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~ 164 (233)
.++..+..+-.+..+-. ..|+++++||+++-++.. .+.. +++.+..+.+++.+++++++.
T Consensus 111 ~LS~G~~qrv~laral~--~~p~illlDEP~~~LD~~-------------~~~~-----l~~~l~~~~~~~~tiii~sh~ 170 (194)
T cd03213 111 GLSGGERKRVSIALELV--SNPSLLFLDEPTSGLDSS-------------SALQ-----VMSLLRRLADTGRTIICSIHQ 170 (194)
T ss_pred cCCHHHHHHHHHHHHHH--cCCCEEEEeCCCcCCCHH-------------HHHH-----HHHHHHHHHhCCCEEEEEecC
Confidence 33444444444443332 239999999999999841 1111 555666665567777777664
Q ss_pred CCCCCchhHHHHHHhhccceEEEe
Q 041690 165 HLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
.. .....+.+.++.+..
T Consensus 171 ~~-------~~~~~~~d~v~~l~~ 187 (194)
T cd03213 171 PS-------SEIFELFDKLLLLSQ 187 (194)
T ss_pred ch-------HHHHHhcCEEEEEeC
Confidence 21 135567888888864
No 127
>PRK05642 DNA replication initiation factor; Validated
Probab=98.95 E-value=7.8e-09 Score=85.07 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=31.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
..++|+||+|+|||+|+..++.... ..+.+++|++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~-~~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE-QRGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEeeH
Confidence 6789999999999999998887766 55789999973
No 128
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.95 E-value=5.1e-09 Score=84.71 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876543
No 129
>PRK06526 transposase; Provisional
Probab=98.95 E-value=4.7e-09 Score=87.27 Aligned_cols=38 Identities=26% Similarity=0.416 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
+.+..++|+||||||||+|+..++...+ ..|.+|.|++
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~v~f~t 133 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRAC-QAGHRVLFAT 133 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHH-HCCCchhhhh
Confidence 5677899999999999999999998888 6788898875
No 130
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.95 E-value=4.9e-09 Score=84.86 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 131
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.94 E-value=1.3e-08 Score=76.02 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
.+..++|+||||||||++++.++.... ..+.+++|++.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~ 55 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF-RPGAPFLYLNA 55 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh-cCCCCeEEEeh
Confidence 577899999999999999999988776 55778888863
No 132
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.94 E-value=8.1e-09 Score=81.51 Aligned_cols=142 Identities=16% Similarity=0.131 Sum_probs=81.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccC---------CchhhhcceEE---
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSID---------PSSHVFKLIQM--- 83 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~---------~~~~~~~~i~~--- 83 (233)
.+.|+++.|.||+|+||||+++.++.-+... ...++++.-+.. ..+..+.+..+ ..-.+.++|..
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~--~G~v~idg~d~~-~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~ 101 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTV-RDPSFVRRKIGVLFGERGLYARLTARENLKYFAR 101 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHHhccCC--CceEEEeecccc-cChHHHhhhcceecCCcChhhhhhHHHHHHHHHH
Confidence 3799999999999999999999988766533 335666543211 11111111110 00001111110
Q ss_pred -----------------------EE-------ecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchh
Q 041690 84 -----------------------KY-------VEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGR 133 (233)
Q Consensus 84 -----------------------~~-------~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~ 133 (233)
.+ .+..-..+-.++.+.. ..|+++++||+++-++-
T Consensus 102 L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlv--h~P~i~vlDEP~sGLDi------------- 166 (245)
T COG4555 102 LNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALV--HDPSILVLDEPTSGLDI------------- 166 (245)
T ss_pred HhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHh--cCCCeEEEcCCCCCccH-------------
Confidence 00 0011111112222222 22999999999998883
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 134 DLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 134 ~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
.+...+++.+..++..|.+++.-++.. .-.+..+|+++.|..
T Consensus 167 -----~~~r~~~dfi~q~k~egr~viFSSH~m--------~EvealCDrvivlh~ 208 (245)
T COG4555 167 -----RTRRKFHDFIKQLKNEGRAVIFSSHIM--------QEVEALCDRVIVLHK 208 (245)
T ss_pred -----HHHHHHHHHHHHhhcCCcEEEEecccH--------HHHHHhhheEEEEec
Confidence 233448889988888888777765532 245667888888875
No 133
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=9.2e-09 Score=83.25 Aligned_cols=28 Identities=36% Similarity=0.388 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876543
No 134
>PRK12377 putative replication protein; Provisional
Probab=98.93 E-value=7.1e-09 Score=85.76 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
...++|+||||||||+|+.+++..+. ..|.+|+|++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~-~~g~~v~~i~~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL-AKGRSVIVVTV 137 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEEEH
Confidence 46799999999999999999999888 67889999973
No 135
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.93 E-value=1.1e-08 Score=82.73 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876543
No 136
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=6.5e-09 Score=83.94 Aligned_cols=28 Identities=25% Similarity=0.135 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998886543
No 137
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.93 E-value=2.2e-08 Score=81.89 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
..+..++|+||||||||+|+..++.... ..+..+.|++
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~~~~~i~ 77 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADAS-YGGRNARYLD 77 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEe
Confidence 3567899999999999999999988776 5678899986
No 138
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.92 E-value=1.2e-08 Score=82.73 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=25.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|+|||||++.++....
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36999999999999999999998886554
No 139
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.92 E-value=1.2e-08 Score=82.45 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998886543
No 140
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.92 E-value=1e-08 Score=85.25 Aligned_cols=143 Identities=15% Similarity=0.169 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-------CeEEEEecCCccccc-----ccccccccCC----chhhhcc
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSN-------ANVVFMCNRSRLQSK-----RPYLSQSIDP----SSHVFKL 80 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-------~~v~yi~~e~~l~~~-----~~~~~~~~~~----~~~~~~~ 80 (233)
.+|..+.|.||+|+|||||++.++.......| ..+.|+..+..+... ..++....+. ...+++.
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKR 107 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHH
Confidence 79999999999999999999988765432222 245666544211110 0010000000 0111111
Q ss_pred eEE--------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhh
Q 041690 81 IQM--------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHAN 152 (233)
Q Consensus 81 i~~--------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ 152 (233)
+.+ ..++.++..+-.+..+- -..|+++++||+++-++.. .... +++.+..+.
T Consensus 108 ~gl~~~~~~~~~~LSgGq~qrv~laral--~~~p~lllLDEPt~~LD~~-------------~~~~-----l~~~L~~~~ 167 (251)
T PRK09544 108 VQAGHLIDAPMQKLSGGETQRVLLARAL--LNRPQLLVLDEPTQGVDVN-------------GQVA-----LYDLIDQLR 167 (251)
T ss_pred cCChHHHhCChhhCCHHHHHHHHHHHHH--hcCCCEEEEeCCCcCCCHH-------------HHHH-----HHHHHHHHH
Confidence 111 12233333333444333 2239999999999999841 1111 555565555
Q ss_pred hc-CCcEEEEeecCCCCCchhHHHHHHhhccceEEE
Q 041690 153 KK-SPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVK 187 (233)
Q Consensus 153 ~~-~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~ 187 (233)
++ +.+++++++... .+..+.+.++.+.
T Consensus 168 ~~~g~tiiivsH~~~--------~i~~~~d~i~~l~ 195 (251)
T PRK09544 168 RELDCAVLMVSHDLH--------LVMAKTDEVLCLN 195 (251)
T ss_pred HhcCCEEEEEecCHH--------HHHHhCCEEEEEC
Confidence 54 666766655421 5567778888775
No 141
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.92 E-value=9.7e-09 Score=83.56 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876543
No 142
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.92 E-value=8.7e-09 Score=83.06 Aligned_cols=28 Identities=21% Similarity=0.113 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6999999999999999999998876543
No 143
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=1.1e-08 Score=81.59 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=74.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh-hcCCCeEEEEecCCc---ccccccccccccC--CchhhhcceEE----EEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA-SQSNANVVFMCNRSR---LQSKRPYLSQSID--PSSHVFKLIQM----KYV 86 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~-~~~g~~v~yi~~e~~---l~~~~~~~~~~~~--~~~~~~~~i~~----~~~ 86 (233)
.+|..+.|.||+|||||||++.++.... ....+. ++++.+.. +.....++.+... ....+.+++.+ ..+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~-i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~L 109 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGE-ILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGL 109 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceE-EEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcC
Confidence 7999999999999999999998874321 011222 23332210 0000111111100 11112222211 123
Q ss_pred cCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCC
Q 041690 87 EDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHL 166 (233)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~ 166 (233)
+..+..+-.+..+- -..|+++++||+++-++. ..+.. +++.+..+++.+.+++++++...
T Consensus 110 SgGe~qrv~la~al--~~~p~vlllDEP~~~LD~-------------~~~~~-----l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 110 SVEQRKRLTIGVEL--AAKPSILFLDEPTSGLDS-------------QAAYN-----IVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred CHHHhHHHHHHHHH--hcCCcEEEEeCCCcCCCH-------------HHHHH-----HHHHHHHHHHcCCEEEEEEcCCh
Confidence 33444333344333 223999999999999984 11112 55566665555777777765421
Q ss_pred CCCchhHHHHHHhhccceEEEe
Q 041690 167 GNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
....++++.++.+..
T Consensus 170 -------~~~~~~~d~i~~l~~ 184 (192)
T cd03232 170 -------ASIFEKFDRLLLLKR 184 (192)
T ss_pred -------HHHHhhCCEEEEEcC
Confidence 023556787777753
No 144
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=1e-08 Score=84.49 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=25.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|||||||++.++....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 37999999999999999999998876543
No 145
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.91 E-value=9.5e-09 Score=83.42 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 7999999999999999999998876544
No 146
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=8.8e-09 Score=84.49 Aligned_cols=28 Identities=18% Similarity=0.049 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876554
No 147
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.91 E-value=9.8e-09 Score=82.93 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999998876543
No 148
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.91 E-value=1.4e-08 Score=83.82 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998886543
No 149
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=1.5e-08 Score=83.49 Aligned_cols=28 Identities=32% Similarity=0.281 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 150
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=9.6e-09 Score=83.57 Aligned_cols=27 Identities=26% Similarity=0.205 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|+|||||++.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999999999887644
No 151
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.90 E-value=1.1e-08 Score=83.86 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998875543
No 152
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.90 E-value=1.5e-08 Score=82.21 Aligned_cols=28 Identities=29% Similarity=0.236 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876544
No 153
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.90 E-value=8.9e-09 Score=84.61 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=25.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|||||||++.++....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37999999999999999999998876543
No 154
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.90 E-value=1.3e-08 Score=83.06 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876543
No 155
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=2.7e-08 Score=81.62 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=25.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|||||||++.++....
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36999999999999999999998876544
No 156
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.90 E-value=7.8e-09 Score=88.39 Aligned_cols=28 Identities=25% Similarity=0.116 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|.++.|.||+|+|||||++.++....
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999998886544
No 157
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.89 E-value=1.1e-08 Score=83.99 Aligned_cols=28 Identities=29% Similarity=0.236 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 7999999999999999999998875443
No 158
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.89 E-value=1.4e-08 Score=82.64 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQ-SNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~-~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
...+.||||+|+|||+|+.+++...... .+.+|+|++.+. +......... ...+..+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~-------f~~~~~~~~~-------------~~~~~~~~~ 93 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE-------FIREFADALR-------------DGEIEEFKD 93 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH-------HHHHHHHHHH-------------TTSHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH-------HHHHHHHHHH-------------cccchhhhh
Confidence 3468999999999999999998877633 578899997432 1110000000 001112222
Q ss_pred HhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCC
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLG 167 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~ 167 (233)
.. . ..++++||+++.+... ..++. .++.++..+...|..+++.+.....
T Consensus 94 ~~---~-~~DlL~iDDi~~l~~~--------------~~~q~---~lf~l~n~~~~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 94 RL---R-SADLLIIDDIQFLAGK--------------QRTQE---ELFHLFNRLIESGKQLILTSDRPPS 142 (219)
T ss_dssp HH---C-TSSEEEEETGGGGTTH--------------HHHHH---HHHHHHHHHHHTTSEEEEEESS-TT
T ss_pred hh---h-cCCEEEEecchhhcCc--------------hHHHH---HHHHHHHHHHhhCCeEEEEeCCCCc
Confidence 22 2 2889999999887652 11222 2566666666777777666655433
No 159
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.89 E-value=1.4e-08 Score=83.72 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 7999999999999999999998875443
No 160
>PF13479 AAA_24: AAA domain
Probab=98.89 E-value=2.9e-08 Score=80.47 Aligned_cols=147 Identities=15% Similarity=0.182 Sum_probs=80.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFAA 98 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 98 (233)
+-.++||||||+|||+++..+ .+.+|+++|....... .+. ......+.+.+.+.+.+..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~---------~k~l~id~E~g~~~~~-~~~-----------~~~~i~i~s~~~~~~~~~~ 61 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL---------PKPLFIDTENGSDSLK-FLD-----------DGDVIPITSWEDFLEALDE 61 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC---------CCeEEEEeCCCccchh-hhc-----------CCCeeCcCCHHHHHHHHHH
Confidence 456899999999999999844 5789999885211111 110 0000112246666666655
Q ss_pred hcccCCCCcEEEEeCCCcccccc---cc------ccccCCcchhhHHHHHHHHHHHHHHHH-hhhcCCcEEEEeecCCC-
Q 041690 99 FHQHDKIPTAVVVDDFGDLFDDR---TC------QERYTNPRGRDLAMVRTLALCYNAITH-ANKKSPCKLLLSDTHLG- 167 (233)
Q Consensus 99 ~~~~~~~p~iIvIDei~~~~~~~---~~------~~~~~~~~~~~~~~~~~l~~l~~~~~~-l~~~~~~vlvi~~~~~~- 167 (233)
+.......+.||||+++.+...- .. ..+.+... ....+...-..+.+++.. ++..+..||++++....
T Consensus 62 l~~~~~~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~yg~~~~~~~~~i~~l~~~~~~~VI~tah~~~~~ 140 (213)
T PF13479_consen 62 LEEDEADYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPD-YGKGYGELQQEFMRFIDKLLNALGKNVIFTAHAKEEE 140 (213)
T ss_pred HHhccCCCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCc-ccchHHHHHHHHHHHHHHHHHHCCCcEEEEEEEEEEE
Confidence 43334458999999998874421 11 01111111 011121111224444544 33478889888875311
Q ss_pred -------------CCchhHHHHHHhhccceEEE
Q 041690 168 -------------NSTRLLYIYKRWISSIFTVK 187 (233)
Q Consensus 168 -------------~~~~~~~~~~~~~~~~~~i~ 187 (233)
........+..++|.+.++.
T Consensus 141 ~~~~~~~~~~~~~l~~k~~~~l~~~~D~V~~l~ 173 (213)
T PF13479_consen 141 DEDGGKYTRYKPKLGKKVRNELPGWFDVVGRLR 173 (213)
T ss_pred cCCCCceeEEeeccChhHHhhhhecccEEEEEE
Confidence 12234456788999996665
No 161
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=2e-08 Score=83.72 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=25.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|||||||++.++....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37999999999999999999998876543
No 162
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=2.4e-08 Score=80.73 Aligned_cols=29 Identities=31% Similarity=0.288 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|+|||||++.++....
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37999999999999999999998876543
No 163
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.89 E-value=2e-08 Score=78.95 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=22.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFA 40 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a 40 (233)
..+|..+.|.||+|||||||++.++
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3699999999999999999999764
No 164
>PRK09183 transposase/IS protein; Provisional
Probab=98.88 E-value=7.7e-08 Score=80.31 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=34.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+++..++|+||||||||+|+..++...+ ..|.+|.|++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEe
Confidence 46788999999999999999999987766 6788999986
No 165
>PRK10908 cell division protein FtsE; Provisional
Probab=98.88 E-value=1.6e-08 Score=82.44 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998875543
No 166
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.88 E-value=9.1e-09 Score=87.81 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.++|..+.|.||+|||||||++.++....
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37999999999999999999998876544
No 167
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.88 E-value=1.2e-08 Score=82.57 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..+|.++.|.||+|||||||++.+........| -++++++
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~G--eI~i~G~ 70 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLRLILGLLRPDKG--EILIDGE 70 (263)
T ss_pred ecCCcEEEEECCCCcCHHHHHHHHhccCCCCCC--eEEEcCc
Confidence 379999999999999999999988776653322 3444443
No 168
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.88 E-value=1.3e-08 Score=86.95 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|+|||||++.++....
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37999999999999999999998876543
No 169
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.88 E-value=1.8e-08 Score=84.07 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999998876544
No 170
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=3.2e-08 Score=79.52 Aligned_cols=144 Identities=12% Similarity=0.124 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhh--cCCCeEEEEecCCc------ccccccccccccC--CchhhhcceEE---
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCAS--QSNANVVFMCNRSR------LQSKRPYLSQSID--PSSHVFKLIQM--- 83 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~--~~g~~v~yi~~e~~------l~~~~~~~~~~~~--~~~~~~~~i~~--- 83 (233)
.+|..+.|.||+|||||||++.++..... ...+. ++++.... ......+..+... ....+.+++..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~-i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 109 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGD-IHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALR 109 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceE-EEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhh
Confidence 79999999999999999999988765431 11222 23332210 0000111111100 11112222211
Q ss_pred -------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhc-C
Q 041690 84 -------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKK-S 155 (233)
Q Consensus 84 -------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~ 155 (233)
..++..+..+-.+..+-. ..|+++++||+++-++. ..+.. +++.+..+.+. +
T Consensus 110 ~~~~~~~~~LS~Ge~qrl~laral~--~~p~llllDEPt~~LD~-------------~~~~~-----~~~~l~~~~~~~~ 169 (202)
T cd03233 110 CKGNEFVRGISGGERKRVSIAEALV--SRASVLCWDNSTRGLDS-------------STALE-----ILKCIRTMADVLK 169 (202)
T ss_pred hccccchhhCCHHHHHHHHHHHHHh--hCCCEEEEcCCCccCCH-------------HHHHH-----HHHHHHHHHHhCC
Confidence 122334443333443332 23999999999999984 11112 55666666554 3
Q ss_pred CcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 156 PCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 156 ~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
.+++++++. ..+ .+.++.+.++.+..
T Consensus 170 ~t~ii~~~h-~~~------~~~~~~d~i~~l~~ 195 (202)
T cd03233 170 TTTFVSLYQ-ASD------EIYDLFDKVLVLYE 195 (202)
T ss_pred CEEEEEEcC-CHH------HHHHhCCeEEEEEC
Confidence 444444332 211 45667888888875
No 171
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.87 E-value=3.1e-08 Score=79.53 Aligned_cols=143 Identities=11% Similarity=0.097 Sum_probs=76.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh-hhcCCCeEEEEecCCc--ccc------cccccccccC--CchhhhcceEE--
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC-ASQSNANVVFMCNRSR--LQS------KRPYLSQSID--PSSHVFKLIQM-- 83 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~-~~~~g~~v~yi~~e~~--l~~------~~~~~~~~~~--~~~~~~~~i~~-- 83 (233)
.+|..+.|.||+|+|||||++.++... .....+.+ +++.+.. ... ...++.+... ....+.+.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i-~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~ 102 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI-LFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVN 102 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEE-EECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcc
Confidence 799999999999999999999887652 11222333 3333210 000 0001111100 00011111110
Q ss_pred EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEee
Q 041690 84 KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSD 163 (233)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~ 163 (233)
..++..+..+-.+..+- -..|+++++||+++-++.. ... .+++.+..+++++.+++++++
T Consensus 103 ~~LS~G~~qrv~laral--~~~p~illlDEPt~~LD~~-------------~~~-----~l~~~L~~~~~~~~tiii~sh 162 (200)
T cd03217 103 EGFSGGEKKRNEILQLL--LLEPDLAILDEPDSGLDID-------------ALR-----LVAEVINKLREEGKSVLIITH 162 (200)
T ss_pred ccCCHHHHHHHHHHHHH--hcCCCEEEEeCCCccCCHH-------------HHH-----HHHHHHHHHHHCCCEEEEEec
Confidence 12333444444444333 2239999999999999831 111 155666666555666777655
Q ss_pred cCCCCCchhHHHHHH-hhccceEEEe
Q 041690 164 THLGNSTRLLYIYKR-WISSIFTVKG 188 (233)
Q Consensus 164 ~~~~~~~~~~~~~~~-~~~~~~~i~~ 188 (233)
.. . ...+ +.+.++.+..
T Consensus 163 ~~-------~-~~~~~~~d~i~~l~~ 180 (200)
T cd03217 163 YQ-------R-LLDYIKPDRVHVLYD 180 (200)
T ss_pred CH-------H-HHHHhhCCEEEEEEC
Confidence 32 1 4556 6898888874
No 172
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=5.5e-09 Score=92.71 Aligned_cols=139 Identities=23% Similarity=0.211 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
-+-..+|+.||||+|||+||.++|. ..+.+++-+.. ++-+ .++.++. ....+++.|
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiS-------pe~m-iG~sEsa------------Kc~~i~k~F 591 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIIS-------PEDM-IGLSESA------------KCAHIKKIF 591 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeC-------hHHc-cCccHHH------------HHHHHHHHH
Confidence 3556889999999999999997766 66777777641 1111 1111111 155788889
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
+.+. ++.-++||||+++.+++...-++|. ...+ |..++-+++....+|...+++++++.....+.+ -+
T Consensus 592 ~DAY--kS~lsiivvDdiErLiD~vpIGPRf-------SN~v--lQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m-~i 659 (744)
T KOG0741|consen 592 EDAY--KSPLSIIVVDDIERLLDYVPIGPRF-------SNLV--LQALLVLLKKQPPKGRKLLIFGTTSRREVLQEM-GI 659 (744)
T ss_pred HHhh--cCcceEEEEcchhhhhcccccCchh-------hHHH--HHHHHHHhccCCCCCceEEEEecccHHHHHHHc-CH
Confidence 8776 4447999999999999975444443 3322 222444555555668888999988866544433 23
Q ss_pred HHhhccceEEEecCC
Q 041690 177 KRWISSIFTVKGDGP 191 (233)
Q Consensus 177 ~~~~~~~~~i~~~~~ 191 (233)
-..|+..++++....
T Consensus 660 ~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 660 LDCFSSTIHVPNLTT 674 (744)
T ss_pred HHhhhheeecCccCc
Confidence 345677888886433
No 173
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=1.5e-08 Score=83.57 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876543
No 174
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.86 E-value=1.5e-08 Score=87.85 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 29 ~~Gei~gIiG~sGaGKSTLlr~I~gl~~ 56 (343)
T TIGR02314 29 PAGQIYGVIGASGAGKSTLIRCVNLLER 56 (343)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876544
No 175
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=2.2e-08 Score=85.56 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=40.3
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++.. .+.. +++.+..+++.+.+++++++.. ..+.++.++++.
T Consensus 184 P~lLlLDEPt~~LD~~-------------~~~~-----l~~~l~~l~~~g~tiiivtHd~--------~~~~~~adrv~v 237 (305)
T PRK13651 184 PDFLVFDEPTAGLDPQ-------------GVKE-----ILEIFDNLNKQGKTIILVTHDL--------DNVLEWTKRTIF 237 (305)
T ss_pred CCEEEEeCCCCCCCHH-------------HHHH-----HHHHHHHHHHCCCEEEEEeeCH--------HHHHHhCCEEEE
Confidence 9999999999999841 1111 5666666666677887776642 145678899988
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+..
T Consensus 238 l~~ 240 (305)
T PRK13651 238 FKD 240 (305)
T ss_pred EEC
Confidence 864
No 176
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=1.7e-08 Score=83.98 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6999999999999999999998876543
No 177
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.86 E-value=2.4e-08 Score=81.02 Aligned_cols=139 Identities=16% Similarity=0.111 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEE-------------
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQM------------- 83 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~------------- 83 (233)
.+|..+-|.|++|+|||||++.++.......| + +.+..+- ...--+..++++.-.-.+|+.+
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G-~-v~v~G~v---~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~ 125 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG-K-VKVTGKV---APLIELGAGFDPELTGRENIYLRGLILGLTRKEID 125 (249)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCccCCCCc-e-EEEcceE---ehhhhcccCCCcccchHHHHHHHHHHhCccHHHHH
Confidence 69999999999999999999988765553222 2 2222110 0000011111111111111111
Q ss_pred --------------------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHH
Q 041690 84 --------------------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLAL 143 (233)
Q Consensus 84 --------------------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (233)
+..++.-..+-.|..+. ...|++++|||+-+.-+..+ + ..
T Consensus 126 ~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~--~~~pdILllDEvlavGD~~F---------------~---~K 185 (249)
T COG1134 126 EKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVAT--HVEPDILLLDEVLAVGDAAF---------------Q---EK 185 (249)
T ss_pred HHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhh--hcCCCEEEEehhhhcCCHHH---------------H---HH
Confidence 22333444555555443 22399999999988887421 1 11
Q ss_pred HHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 144 CYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 144 l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
..+.+..+.+++.+++++++... ....|++.+++++.
T Consensus 186 ~~~rl~e~~~~~~tiv~VSHd~~--------~I~~~Cd~~i~l~~ 222 (249)
T COG1134 186 CLERLNELVEKNKTIVLVSHDLG--------AIKQYCDRAIWLEH 222 (249)
T ss_pred HHHHHHHHHHcCCEEEEEECCHH--------HHHHhcCeeEEEeC
Confidence 44555555567788888877532 78999999999986
No 178
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=1.9e-08 Score=84.68 Aligned_cols=57 Identities=12% Similarity=0.258 Sum_probs=39.8
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++.. .+.. +++.+..+++++.+++++++... ...+|.+.++.
T Consensus 157 p~llllDEPt~~LD~~-------------~~~~-----l~~~l~~~~~~g~tili~tH~~~--------~~~~~~d~i~~ 210 (274)
T PRK13647 157 PDVIVLDEPMAYLDPR-------------GQET-----LMEILDRLHNQGKTVIVATHDVD--------LAAEWADQVIV 210 (274)
T ss_pred CCEEEEECCCcCCCHH-------------HHHH-----HHHHHHHHHHCCCEEEEEeCCHH--------HHHHhCCEEEE
Confidence 9999999999999841 1112 56666666556777777755321 56678899888
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+..
T Consensus 211 l~~ 213 (274)
T PRK13647 211 LKE 213 (274)
T ss_pred EEC
Confidence 864
No 179
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.86 E-value=1.9e-08 Score=83.33 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 699999999999999999999887544
No 180
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.3e-08 Score=87.82 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
.-..+++||||||||||||+.++. ..+..+..++.- ....+.++++++
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~----~~~~~f~~~sAv----------------------------~~gvkdlr~i~e 94 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAG----TTNAAFEALSAV----------------------------TSGVKDLREIIE 94 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHH----hhCCceEEeccc----------------------------cccHHHHHHHHH
Confidence 456789999999999999997776 334555555411 111567777777
Q ss_pred Hhccc--CCCCcEEEEeCCCcccc
Q 041690 98 AFHQH--DKIPTAVVVDDFGDLFD 119 (233)
Q Consensus 98 ~~~~~--~~~p~iIvIDei~~~~~ 119 (233)
.+... ..+-.++|||||..|-.
T Consensus 95 ~a~~~~~~gr~tiLflDEIHRfnK 118 (436)
T COG2256 95 EARKNRLLGRRTILFLDEIHRFNK 118 (436)
T ss_pred HHHHHHhcCCceEEEEehhhhcCh
Confidence 66332 12246999999998877
No 181
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.86 E-value=1e-08 Score=80.22 Aligned_cols=125 Identities=13% Similarity=0.151 Sum_probs=68.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccc-cccccccccCCchhhhcceEEEEecCHHHHHHHHHH
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQS-KRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFAA 98 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 98 (233)
..++|.||||||||++|.+++.. .+.+++|+.+-..+.. ...++........ -.+..++....+.+++..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~----~~~~~~~iat~~~~~~e~~~ri~~h~~~R~-----~~w~t~E~~~~l~~~i~~ 72 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ----SGLQVLYIATAQPFDDEMAARIAHHRQRRP-----AHWQTVEEPLDLAELLRA 72 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH----cCCCcEeCcCCCCChHHHHHHHHHHHhcCC-----CCCeEecccccHHHHHHh
Confidence 46899999999999999988763 3567899986531111 0011100000000 001122223345555443
Q ss_pred hcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCC
Q 041690 99 FHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHL 166 (233)
Q Consensus 99 ~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~ 166 (233)
. ...+.+|+||+++.+...... ..... .+. ..+..++..+++.+.++++|++...
T Consensus 73 ~---~~~~~~VlID~Lt~~~~n~l~-----~~~~~--~~~---~~l~~li~~L~~~~~tvVlVs~Evg 127 (170)
T PRK05800 73 D---AAPGRCVLVDCLTTWVTNLLF-----EEGEE--AIA---AEIDALLAALQQLPAKIILVTNEVG 127 (170)
T ss_pred h---cCCCCEEEehhHHHHHHHHhc-----ccchH--HHH---HHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 1 122679999999999874211 00001 111 1245566667777888888877653
No 182
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=2e-08 Score=84.37 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876544
No 183
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.85 E-value=2.1e-08 Score=83.53 Aligned_cols=57 Identities=9% Similarity=0.141 Sum_probs=40.1
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++.. ... .+++.+..+++.+.+++++++... .+..+.+.++.
T Consensus 171 p~llllDEPt~~LD~~-------------~~~-----~l~~~l~~l~~~g~tiiivsH~~~--------~~~~~~d~i~~ 224 (257)
T PRK10619 171 PEVLLFDEPTSALDPE-------------LVG-----EVLRIMQQLAEEGKTMVVVTHEMG--------FARHVSSHVIF 224 (257)
T ss_pred CCEEEEeCCcccCCHH-------------HHH-----HHHHHHHHHHhcCCEEEEEeCCHH--------HHHHhcCEEEE
Confidence 9999999999999841 111 266666666666777777766321 56677888888
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+..
T Consensus 225 l~~ 227 (257)
T PRK10619 225 LHQ 227 (257)
T ss_pred EEC
Confidence 874
No 184
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=1.6e-08 Score=87.78 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 185
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=2e-08 Score=82.48 Aligned_cols=28 Identities=36% Similarity=0.390 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|+|||||++.++....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999998876554
No 186
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.85 E-value=2.7e-08 Score=82.00 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998886543
No 187
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.85 E-value=2.1e-08 Score=81.92 Aligned_cols=28 Identities=25% Similarity=0.097 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876543
No 188
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.84 E-value=7.6e-08 Score=82.86 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
.+..++|+||||+|||+|+..+|..+. ..|.+|+|++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~-~~g~~V~y~t~ 219 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELL-DRGKSVIYRTA 219 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEEH
Confidence 457899999999999999999999888 67899999973
No 189
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.84 E-value=3.2e-08 Score=82.82 Aligned_cols=143 Identities=16% Similarity=0.220 Sum_probs=81.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCC--cc-----cccc---cccccccC--CchhhhcceEE
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRS--RL-----QSKR---PYLSQSID--PSSHVFKLIQM 83 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~--~l-----~~~~---~~~~~~~~--~~~~~~~~i~~ 83 (233)
.++|.++-|.|.+|+|||||.+.+ +...+....-+++++.+ .+ ...+ ..+.|.+. .+..+.+|+.+
T Consensus 29 I~~GeI~GIIG~SGAGKSTLiR~i--N~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~ 106 (339)
T COG1135 29 IPKGEIFGIIGYSGAGKSTLLRLI--NLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAF 106 (339)
T ss_pred EcCCcEEEEEcCCCCcHHHHHHHH--hccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhh
Confidence 379999999999999999999955 33323333445555431 01 1111 11222222 22344444443
Q ss_pred ---------------------------------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCc
Q 041690 84 ---------------------------------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNP 130 (233)
Q Consensus 84 ---------------------------------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~ 130 (233)
..++.++..+-.++.+- ...|++++.||.++.++..
T Consensus 107 PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL--a~~P~iLL~DEaTSALDP~--------- 175 (339)
T COG1135 107 PLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL--ANNPKILLCDEATSALDPE--------- 175 (339)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH--hcCCCEEEecCccccCChH---------
Confidence 01112222333333222 3349999999999999842
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhc-CCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 131 RGRDLAMVRTLALCYNAITHANKK-SPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 131 ~~~~~~~~~~l~~l~~~~~~l~~~-~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
.. ..++++++.++++ |.++++|++. |.+.++.++++..++.
T Consensus 176 ----TT-----~sIL~LL~~In~~lglTIvlITHE--------m~Vvk~ic~rVavm~~ 217 (339)
T COG1135 176 ----TT-----QSILELLKDINRELGLTIVLITHE--------MEVVKRICDRVAVLDQ 217 (339)
T ss_pred ----HH-----HHHHHHHHHHHHHcCCEEEEEech--------HHHHHHHhhhheEeeC
Confidence 11 1155666666544 8888888775 2377778888777774
No 190
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=3e-08 Score=86.47 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|||||||++.++....
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~~ 55 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLER 55 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 36999999999999999999998876544
No 191
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.84 E-value=1.5e-08 Score=79.89 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
+.+..++|+||||+|||+||..++.++. ..|.+|.|++..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~-~~g~~v~f~~~~ 84 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAI-RKGYSVLFITAS 84 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhc-cCCcceeEeecC
Confidence 5788999999999999999999999888 689999999744
No 192
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.84 E-value=2.6e-08 Score=81.70 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=25.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|+|||||++.++....
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999998876544
No 193
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.84 E-value=3.7e-08 Score=79.06 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
..|+.++|.||+|||||||+++++...
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 467899999999999999999998655
No 194
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.84 E-value=2.6e-08 Score=81.30 Aligned_cols=28 Identities=29% Similarity=0.234 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999998876543
No 195
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.83 E-value=2.8e-08 Score=82.00 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=31.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
..++|+|+||||||+|+..++..+. ..|.+|+|++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~-~~g~~v~~it 134 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL-LRGKSVLIIT 134 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEE
Confidence 5799999999999999999999887 6789999996
No 196
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.83 E-value=2.1e-08 Score=81.58 Aligned_cols=29 Identities=28% Similarity=0.177 Sum_probs=25.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|||||||++.++....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37999999999999999999998775443
No 197
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.83 E-value=1.9e-08 Score=85.39 Aligned_cols=29 Identities=34% Similarity=0.248 Sum_probs=25.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.++|.++.|.||+|+|||||.+.++....
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 37999999999999999999998876554
No 198
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.83 E-value=1.9e-08 Score=87.13 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|+|||||++.++....
T Consensus 65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 65 ASGECFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 6999999999999999999998876544
No 199
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.83 E-value=2.1e-08 Score=81.52 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 200
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=2.1e-08 Score=84.30 Aligned_cols=28 Identities=29% Similarity=0.530 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 7999999999999999999998875443
No 201
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.83 E-value=3.4e-08 Score=86.08 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 202
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.83 E-value=2.7e-08 Score=87.15 Aligned_cols=28 Identities=32% Similarity=0.492 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~~ 54 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 6999999999999999999998876543
No 203
>PRK08116 hypothetical protein; Validated
Probab=98.83 E-value=2.9e-08 Score=83.29 Aligned_cols=37 Identities=27% Similarity=0.217 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+..++|+|+||+|||+|+.+++..+. ..+.+++|++
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~-~~~~~v~~~~ 149 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELI-EKGVPVIFVN 149 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEE
Confidence 455799999999999999999998887 5588999996
No 204
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.82 E-value=4.9e-08 Score=86.27 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|+|||||++.++....
T Consensus 27 ~~Geiv~liGpNGaGKSTLLk~LaGll~ 54 (402)
T PRK09536 27 REGSLVGLVGPNGAGKTTLLRAINGTLT 54 (402)
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 7999999999999999999998876544
No 205
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.82 E-value=3.4e-08 Score=82.73 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 6999999999999999999998876543
No 206
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=3e-08 Score=81.82 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876543
No 207
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.82 E-value=3.7e-08 Score=82.02 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 6999999999999999999998876543
No 208
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=4.3e-08 Score=82.09 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 6999999999999999999998876543
No 209
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.82 E-value=3.2e-08 Score=86.39 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 56 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGFVK 56 (362)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999998876443
No 210
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.81 E-value=3e-08 Score=80.81 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876544
No 211
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=5e-08 Score=82.73 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 30 ~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~ 57 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQ 57 (288)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 7999999999999999999998876544
No 212
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.81 E-value=2.9e-08 Score=85.11 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=24.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+.|..+.|.||+|||||||++.+|--..
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37999999999999999999998875433
No 213
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.4e-08 Score=89.67 Aligned_cols=143 Identities=19% Similarity=0.205 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+...++|+||+|||||+|++.++.......-..+.|++.+. +.... + +++ ...+...|
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~-l~~~~--~-----------e~i-------Qk~l~~vf 487 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCST-LDGSS--L-----------EKI-------QKFLNNVF 487 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechh-ccchh--H-----------HHH-------HHHHHHHH
Confidence 466789999999999999999999877744455677776432 10100 0 000 33455555
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHH-HHHHHHHHhhhcCCcEEEEeecCCCCCchhHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLA-LCYNAITHANKKSPCKLLLSDTHLGNSTRLLYI 175 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~ 175 (233)
..+. ...|++|++|+++.++.... ...++.......+. .+.+.+....+.+..+.+|+....-........
T Consensus 488 se~~--~~~PSiIvLDdld~l~~~s~------~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~ 559 (952)
T KOG0735|consen 488 SEAL--WYAPSIIVLDDLDCLASASS------NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLV 559 (952)
T ss_pred HHHH--hhCCcEEEEcchhhhhccCc------ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhc
Confidence 5544 44599999999999998311 11111111222222 233555544455666566655432211111224
Q ss_pred HHHhhccceEEEe
Q 041690 176 YKRWISSIFTVKG 188 (233)
Q Consensus 176 ~~~~~~~~~~i~~ 188 (233)
..++|..+++++.
T Consensus 560 s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 560 SPLLFQIVIALPA 572 (952)
T ss_pred CccceEEEEecCC
Confidence 4556777777765
No 214
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.80 E-value=2.5e-08 Score=79.32 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=25.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|||||||++.++....
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36999999999999999999998875443
No 215
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.80 E-value=3.5e-08 Score=81.92 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876544
No 216
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.80 E-value=3.4e-08 Score=79.79 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhc-CCcEEEEeecCC
Q 041690 88 DDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKK-SPCKLLLSDTHL 166 (233)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~vlvi~~~~~ 166 (233)
..+..+-.++.+-.++ |++|+-||+.+.++.. .+.. +|+.++.++++ |.|+++.-++-
T Consensus 150 GGQQQRVaIARaL~Q~--pkiILADEPvasLDp~-------------~a~~-----Vm~~l~~in~~~g~Tvi~nLH~v- 208 (258)
T COG3638 150 GGQQQRVAIARALVQQ--PKIILADEPVASLDPE-------------SAKK-----VMDILKDINQEDGITVIVNLHQV- 208 (258)
T ss_pred cchhHHHHHHHHHhcC--CCEEecCCcccccChh-------------hHHH-----HHHHHHHHHHHcCCEEEEEechH-
Confidence 3344444444433222 9999999999999842 1112 77888877665 56665554432
Q ss_pred CCCchhHHHHHHhhccceEEEe
Q 041690 167 GNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+ +..+|+++++-+..
T Consensus 209 -d------lA~~Y~~Riigl~~ 223 (258)
T COG3638 209 -D------LAKKYADRIIGLKA 223 (258)
T ss_pred -H------HHHHHHhhheEecC
Confidence 2 67888999988874
No 217
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.80 E-value=5.3e-08 Score=81.24 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876544
No 218
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=4.2e-08 Score=81.66 Aligned_cols=28 Identities=43% Similarity=0.566 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6999999999999999999998876543
No 219
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=4e-08 Score=85.48 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 6999999999999999999998875444
No 220
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.80 E-value=3.5e-08 Score=81.37 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998886543
No 221
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=3e-08 Score=80.14 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++| .+.|.||+|||||||++.++....
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCCC
Confidence 568 999999999999999998875443
No 222
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.80 E-value=3.5e-08 Score=79.20 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876544
No 223
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=3.6e-08 Score=81.09 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 7999999999999999999998875443
No 224
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.80 E-value=3.9e-08 Score=82.66 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876543
No 225
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.79 E-value=3.9e-08 Score=85.66 Aligned_cols=28 Identities=36% Similarity=0.400 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~ 55 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLER 55 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 6899999999999999999998886544
No 226
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.79 E-value=4e-08 Score=86.21 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 6999999999999999999998876443
No 227
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.79 E-value=6.5e-08 Score=78.53 Aligned_cols=130 Identities=10% Similarity=0.060 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
.+..++|||+||+||||+|+++ + .+.+.++.+. ....+...... +-+.+....+.+.+.+.+.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~----~----~~~~~~~~d~----~~~~l~g~~~~-----~v~~~d~~~~~~~~~d~l~ 73 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYL----P----GKTLVLSFDM----SSKVLIGDENV-----DIADHDDMPPIQAMVEFYV 73 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhc----C----CCCEEEeccc----cchhccCCCCC-----ceeecCCCCCHHHHHHHHH
Confidence 3467999999999999999955 2 2344454332 11111000000 0011111122344444444
Q ss_pred HhcccCCCCcEEEEeCCCcccccccc--ccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeec
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFDDRTC--QERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDT 164 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~ 164 (233)
.+......++.||||+++.+...-.. .............+...-..+.+.+..+...+..++++++.
T Consensus 74 ~~~~~~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 74 MQNIQAVKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred HHHhccccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 44333444899999999997662100 00000100011111111123556677777788889888876
No 228
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.79 E-value=4.5e-08 Score=79.31 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+ ..+.|.||+|+|||||++.++....
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 57 9999999999999999998876544
No 229
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=4.3e-08 Score=86.59 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~~ 79 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 7999999999999999999998876554
No 230
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.79 E-value=3.5e-08 Score=80.21 Aligned_cols=28 Identities=25% Similarity=0.094 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876544
No 231
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.79 E-value=5.8e-08 Score=81.33 Aligned_cols=28 Identities=18% Similarity=0.065 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6999999999999999999998876544
No 232
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.79 E-value=2.9e-08 Score=79.79 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999998886544
No 233
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.79 E-value=3.5e-08 Score=90.10 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 35 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 62 (510)
T PRK15439 35 HAGEVHALLGGNGAGKSTLMKIIAGIVP 62 (510)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998875443
No 234
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=3.5e-08 Score=83.60 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999998876544
No 235
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.79 E-value=5.2e-08 Score=80.25 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999998886544
No 236
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=4.1e-08 Score=82.74 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876544
No 237
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.79 E-value=4.7e-08 Score=85.27 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|||||||++.++....
T Consensus 20 i~~Gei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37999999999999999999998876544
No 238
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.79 E-value=4.1e-08 Score=82.43 Aligned_cols=28 Identities=36% Similarity=0.372 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 239
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=4e-08 Score=83.40 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (290)
T PRK13634 31 PSGSYVAIIGHTGSGKSTLLQHLNGLLQ 58 (290)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 7999999999999999999998876544
No 240
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.78 E-value=5.2e-08 Score=78.49 Aligned_cols=93 Identities=24% Similarity=0.261 Sum_probs=55.6
Q ss_pred CCCE-EEEEcCCCCcHHHHHHHHHHHhhhc----CCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHH
Q 041690 18 VDPI-TLLSGPPCCGKTSLLFQFAYNCASQ----SNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEI 92 (233)
Q Consensus 18 ~g~~-~ll~GppGsGKTtLa~~~a~~~~~~----~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 92 (233)
.|-. +|+.|||||||||+++-+|...+.. ...+|..|++..++.....-.+|. .-...+..++....-
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~-------~~g~R~dVld~cpk~ 207 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQH-------GRGRRMDVLDPCPKA 207 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchh-------hhhhhhhhcccchHH
Confidence 4444 9999999999999999999877743 367899998654332211001110 001111222223333
Q ss_pred HHHHHHhcccCCCCcEEEEeCCCcccc
Q 041690 93 KKYFAAFHQHDKIPTAVVVDDFGDLFD 119 (233)
Q Consensus 93 ~~~~~~~~~~~~~p~iIvIDei~~~~~ 119 (233)
..++..++ ...|+++++|||....+
T Consensus 208 ~gmmmaIr--sm~PEViIvDEIGt~~d 232 (308)
T COG3854 208 EGMMMAIR--SMSPEVIIVDEIGTEED 232 (308)
T ss_pred HHHHHHHH--hcCCcEEEEeccccHHH
Confidence 33444443 33499999999988776
No 241
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=4.5e-08 Score=84.18 Aligned_cols=57 Identities=11% Similarity=0.108 Sum_probs=39.8
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++.. .+.. +++.+..++.++.+++++++... .+.++.+.++.
T Consensus 195 p~iLLLDEPtsgLD~~-------------~~~~-----l~~~L~~l~~~g~TiiivtHd~~--------~~~~~adri~v 248 (320)
T PRK13631 195 PEILIFDEPTAGLDPK-------------GEHE-----MMQLILDAKANNKTVFVITHTME--------HVLEVADEVIV 248 (320)
T ss_pred CCEEEEECCccCCCHH-------------HHHH-----HHHHHHHHHHCCCEEEEEecCHH--------HHHHhCCEEEE
Confidence 9999999999999841 1112 56666666666777777766421 45677888888
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+..
T Consensus 249 l~~ 251 (320)
T PRK13631 249 MDK 251 (320)
T ss_pred EEC
Confidence 874
No 242
>PF13173 AAA_14: AAA domain
Probab=98.78 E-value=5.3e-08 Score=72.55 Aligned_cols=35 Identities=34% Similarity=0.563 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
+..++|+||.||||||++++++.... ...+++|++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~ 36 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYIN 36 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeec
Confidence 46799999999999999999987555 457799997
No 243
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.78 E-value=3.8e-08 Score=85.89 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=25.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.++|..+.|.||+|||||||++.++....
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~ 44 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIE 44 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 37999999999999999999998876554
No 244
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=5.3e-08 Score=82.51 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 6999999999999999999998876543
No 245
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.78 E-value=4.3e-08 Score=87.78 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=32.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..++|+||||+|||+|+..++..+. ..+.+++|++.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~-~~~~~v~yi~~~ 178 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR-ESGGKILYVRSE 178 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEeeHH
Confidence 5689999999999999999998877 568899999743
No 246
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.78 E-value=4.8e-08 Score=85.10 Aligned_cols=28 Identities=32% Similarity=0.275 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 53 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEH 53 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998886544
No 247
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.78 E-value=4.4e-08 Score=79.99 Aligned_cols=28 Identities=18% Similarity=0.037 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998886543
No 248
>PRK06921 hypothetical protein; Provisional
Probab=98.78 E-value=6.8e-08 Score=80.91 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+..++|+||||+|||+|+..++..+....|.+|+|++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 46789999999999999999999988733388999997
No 249
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=3.8e-08 Score=83.08 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 250
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.77 E-value=3.5e-08 Score=84.21 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~~ 53 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYLP 53 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 251
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.77 E-value=4.3e-08 Score=86.82 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=33.0
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecC
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTH 165 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~ 165 (233)
|.+||+||+++-++.. .+. . +.+.+..++++|.++++|++..
T Consensus 491 P~lvVLDEPNsNLD~~-----------GE~--A-----L~~Ai~~~k~rG~~vvviaHRP 532 (580)
T COG4618 491 PFLVVLDEPNSNLDSE-----------GEA--A-----LAAAILAAKARGGTVVVIAHRP 532 (580)
T ss_pred CcEEEecCCCCCcchh-----------HHH--H-----HHHHHHHHHHcCCEEEEEecCH
Confidence 9999999999999841 222 2 6677888889999999997753
No 252
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.77 E-value=5.1e-08 Score=81.47 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 6999999999999999999998886543
No 253
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=5.4e-08 Score=82.29 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~ 57 (283)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGILK 57 (283)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999998876544
No 254
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.77 E-value=8.2e-08 Score=79.17 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=24.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
..+|..+.|.||+|||||||++.++..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 379999999999999999999988765
No 255
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=4.7e-08 Score=82.32 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 256
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=98.76 E-value=1.4e-07 Score=84.23 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=37.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+|..++|.|+||+|||+|+.+++.+.+...|.+|+|++.|
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE 232 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE 232 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999988875678999999977
No 257
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.76 E-value=5.1e-08 Score=86.54 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCeEEEEecC
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQS-NANVVFMCNR 57 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~-g~~v~yi~~e 57 (233)
...++|+||||+|||+|+..++..+.... +.+++|++.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 45789999999999999999998776322 6789999743
No 258
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.76 E-value=4.4e-08 Score=89.42 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 29 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 56 (510)
T PRK09700 29 YPGEIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCcC
Confidence 6999999999999999999998875543
No 259
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=3.9e-08 Score=80.71 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876543
No 260
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.76 E-value=6.1e-08 Score=77.61 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876543
No 261
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=5.4e-08 Score=80.32 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|+|||||++.++....
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876543
No 262
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=7.4e-08 Score=79.24 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~ 50 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6999999999999999999998876544
No 263
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.76 E-value=5.3e-08 Score=88.72 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 28 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 55 (501)
T PRK10762 28 YPGRVMALVGENGAGKSTMMKVLTGIYT 55 (501)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876543
No 264
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=4.9e-08 Score=82.38 Aligned_cols=28 Identities=11% Similarity=-0.022 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876544
No 265
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.75 E-value=4.7e-08 Score=89.66 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=31.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCeEEEEecC
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQ-SNANVVFMCNR 57 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~-~g~~v~yi~~e 57 (233)
..++|||++|+|||+|+..++..+... .+.+|+|++.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae 353 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE 353 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 458999999999999999999887632 47899999744
No 266
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.75 E-value=8.9e-08 Score=79.67 Aligned_cols=28 Identities=14% Similarity=-0.022 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 267
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.75 E-value=5.4e-08 Score=79.55 Aligned_cols=28 Identities=25% Similarity=0.158 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 7999999999999999999998886543
No 268
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.75 E-value=6.4e-08 Score=79.22 Aligned_cols=28 Identities=25% Similarity=0.180 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876544
No 269
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.75 E-value=4.4e-08 Score=81.47 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=35.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
+.+..++++||||+|||.|+.+++..++ ..|.+|+|++
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~ 140 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFIT 140 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEE
Confidence 3678999999999999999999999999 8899999996
No 270
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.75 E-value=5e-08 Score=87.74 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCeEEEEecC
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQS-NANVVFMCNR 57 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~-g~~v~yi~~e 57 (233)
...++|+||||+|||+|+..++..+.... +.+++|++.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 35689999999999999999998877332 6789999743
No 271
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.75 E-value=7.2e-08 Score=79.29 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6999999999999999999998875443
No 272
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=98.75 E-value=7.5e-08 Score=86.20 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+|..++|.|+||+|||+|+.+++...+...|.+|+|++-|
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE 233 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE 233 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 68999999999999999999999999885568899999977
No 273
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.75 E-value=1.3e-07 Score=84.81 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=31.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCeEEEEecC
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQ-SNANVVFMCNR 57 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~-~g~~v~yi~~e 57 (233)
..++||||||+|||+|+..++..+... .+.+++|++.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 469999999999999999999877632 36789999743
No 274
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.75 E-value=5e-08 Score=78.48 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876544
No 275
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=5.4e-08 Score=82.55 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876554
No 276
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=98.74 E-value=6.2e-08 Score=81.43 Aligned_cols=134 Identities=13% Similarity=0.212 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhh---------cCCCeEEEEecCCcccccccc---cccccCCchhhhcceEEE
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCAS---------QSNANVVFMCNRSRLQSKRPY---LSQSIDPSSHVFKLIQMK 84 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~---------~~g~~v~yi~~e~~l~~~~~~---~~~~~~~~~~~~~~i~~~ 84 (233)
..|-.++|+|++|+||||++++++.+++. ..-++|+||+-|..-+....+ +...++.+..-..++.+.
T Consensus 87 r~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dlt 166 (402)
T COG3598 87 RKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLT 166 (402)
T ss_pred hcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheecc
Confidence 57788999999999999999999877652 124689999977311111111 111222222222244331
Q ss_pred Eec---------CHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhc-
Q 041690 85 YVE---------DDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKK- 154 (233)
Q Consensus 85 ~~~---------~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~- 154 (233)
-++ ....++.....+. +..|++||||.+-+++... + ....+ ...+.+.++.+...
T Consensus 167 d~~Gaa~~~d~l~pkl~rRfek~~~--Q~rp~~vViDp~v~f~~G~---s---~s~vq-------v~~fi~~~rkla~~l 231 (402)
T COG3598 167 DVSGAADESDVLSPKLYRRFEKILE--QKRPDFVVIDPFVAFYEGK---S---ISDVQ-------VKEFIKKTRKLARNL 231 (402)
T ss_pred ccccCCCccccccHHHHHHHHHHHH--HhCCCeEEEcchhhhcCCc---c---chhHH-------HHHHHHHHHHHHHhc
Confidence 111 1123333333333 4449999999999999742 1 11122 22245555555444
Q ss_pred CCcEEEEeecC
Q 041690 155 SPCKLLLSDTH 165 (233)
Q Consensus 155 ~~~vlvi~~~~ 165 (233)
++.++.+-+++
T Consensus 232 ~caIiy~hHts 242 (402)
T COG3598 232 ECAIIYIHHTS 242 (402)
T ss_pred CCeEEEEeccc
Confidence 45555565554
No 277
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.74 E-value=1.2e-07 Score=77.40 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 6999999999999999999998876543
No 278
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.74 E-value=2.1e-07 Score=75.00 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 6999999999999999999998876543
No 279
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.73 E-value=1.7e-07 Score=76.51 Aligned_cols=27 Identities=37% Similarity=0.489 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 699999999999999999999988766
No 280
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=8.9e-08 Score=81.14 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 31 ~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13641 31 EEGSFVALVGHTGSGKSTLMQHFNALLK 58 (287)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876544
No 281
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.73 E-value=3.5e-08 Score=85.03 Aligned_cols=29 Identities=34% Similarity=0.395 Sum_probs=25.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.++|..+.|.||+||||||+++.+|--..
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37999999999999999999998875444
No 282
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.73 E-value=7.5e-08 Score=80.72 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=25.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.++|..+.|.||+|||||||++.++....
T Consensus 36 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 36 LREGQTLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 37999999999999999999998886554
No 283
>PRK13409 putative ATPase RIL; Provisional
Probab=98.73 E-value=9.2e-08 Score=88.63 Aligned_cols=144 Identities=15% Similarity=0.183 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-----eEEEEecCCccccc---ccccccc---cCC---chhhhcceE
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNA-----NVVFMCNRSRLQSK---RPYLSQS---IDP---SSHVFKLIQ 82 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~-----~v~yi~~e~~l~~~---~~~~~~~---~~~---~~~~~~~i~ 82 (233)
.+|.++.|.||+|+|||||++.++.......|. ++.|+..+..+... .+.+... ... ...+++.+.
T Consensus 363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 689999999999999999999887654422221 23455443111000 0000000 000 011111111
Q ss_pred E--------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 041690 83 M--------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKK 154 (233)
Q Consensus 83 ~--------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~ 154 (233)
+ ..++.++..+-.++.+-. ..|+++++||+++.++. ..+.. +++.++.+.++
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~--~~p~llLLDEPt~~LD~-------------~~~~~-----l~~~l~~l~~~ 502 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLS--RDADLYLLDEPSAHLDV-------------EQRLA-----VAKAIRRIAEE 502 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHh--cCCCEEEEeCCccCCCH-------------HHHHH-----HHHHHHHHHHh
Confidence 1 234445555555554432 23999999999999984 12222 56667666554
Q ss_pred -CCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 155 -SPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 155 -~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+.+++++++.. ....++.+.++.+.+
T Consensus 503 ~g~tviivsHD~--------~~~~~~aDrvivl~~ 529 (590)
T PRK13409 503 REATALVVDHDI--------YMIDYISDRLMVFEG 529 (590)
T ss_pred CCCEEEEEeCCH--------HHHHHhCCEEEEEcC
Confidence 67777776531 145666777777764
No 284
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.73 E-value=1.6e-07 Score=75.47 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-----CeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSN-----ANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-----~~v~yi~~e 57 (233)
++|..+.|.||+|||||||++.++.......| +.+.|+...
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~ 74 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQE 74 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecC
Confidence 79999999999999999999988765542323 135666544
No 285
>PRK05748 replicative DNA helicase; Provisional
Probab=98.73 E-value=2.8e-07 Score=82.86 Aligned_cols=176 Identities=12% Similarity=0.120 Sum_probs=95.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccc-ccc------------cCCch--------
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYL-SQS------------IDPSS-------- 75 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~-~~~------------~~~~~-------- 75 (233)
.+|..++|.|+||+|||+|+.+++...+...|.+|+|++-|..-..-..++ ... +...+
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~ 280 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAM 280 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 699999999999999999999999998856689999999773111111111 000 00000
Q ss_pred -hhhc-ceEEEEec--CHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHh
Q 041690 76 -HVFK-LIQMKYVE--DDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHA 151 (233)
Q Consensus 76 -~~~~-~i~~~~~~--~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l 151 (233)
...+ ++.+.... ....++.....+......+++||||.++.+-... .. ...+. ..+..+...++.+
T Consensus 281 ~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~---~~---~~~r~----~~i~~i~~~LK~l 350 (448)
T PRK05748 281 GSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSG---RS---GENRQ----QEVSEISRSLKAL 350 (448)
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCC---CC---CcCHH----HHHHHHHHHHHHH
Confidence 0000 22222111 1233444333332211148999999998774311 10 01111 2233455555554
Q ss_pred hh-cCCcEEEEeecCCC------CCchhH-----HHHHHhhccceEEEec----------CCccEEEeeccCc
Q 041690 152 NK-KSPCKLLLSDTHLG------NSTRLL-----YIYKRWISSIFTVKGD----------GPGSFLLRNKNYS 202 (233)
Q Consensus 152 ~~-~~~~vlvi~~~~~~------~~~~~~-----~~~~~~~~~~~~i~~~----------~~~~~~l~~~~~~ 202 (233)
++ .+.+++++++.+++ ..|... -.++...|.++.+..+ +..+.++.++++.
T Consensus 351 Ake~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r~~~~~~~~~~~~~~e~~v~K~R~G 423 (448)
T PRK05748 351 AKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDDYYDEETENKNTIEIIIAKQRNG 423 (448)
T ss_pred HHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEecccccCccccCCCceEEEEeccCCC
Confidence 44 47778888877753 123211 1235556777666532 2235777777765
No 286
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.73 E-value=9.7e-08 Score=78.25 Aligned_cols=29 Identities=14% Similarity=0.059 Sum_probs=25.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.++|..+.|.||+|+|||||++.++....
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999999887654
No 287
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.73 E-value=1.3e-07 Score=76.80 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 7999999999999999999998876543
No 288
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.72 E-value=8.7e-08 Score=78.32 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.++|..+.+.||+||||||+++.+-.... ....-++++.+
T Consensus 24 I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~ 63 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGE 63 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCe
Confidence 37999999999999999999997754433 33445666655
No 289
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.72 E-value=8.1e-08 Score=77.04 Aligned_cols=28 Identities=29% Similarity=0.208 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999998876543
No 290
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.72 E-value=1.1e-07 Score=86.30 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 27 ~~Ge~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 27 NAGDSWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 7999999999999999999998876544
No 291
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=1.8e-07 Score=76.77 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 6999999999999999999998886554
No 292
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=1.1e-07 Score=83.51 Aligned_cols=28 Identities=32% Similarity=0.307 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 70 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLRMLAGFEQ 70 (377)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 6999999999999999999998875443
No 293
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.72 E-value=1.2e-07 Score=76.03 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.7
Q ss_pred CCC-CEEEEEcCCCCcHHHHHHHHHH
Q 041690 17 HVD-PITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 17 ~~g-~~~ll~GppGsGKTtLa~~~a~ 41 (233)
.++ +.++|+||+|+|||||+++++.
T Consensus 25 ~~~~~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 25 GENKRVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred CCCceEEEEECCCCCChHHHHHHHHH
Confidence 455 5799999999999999999883
No 294
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.72 E-value=1.8e-07 Score=77.01 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 7999999999999999999998886554
No 295
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.71 E-value=8.3e-08 Score=77.40 Aligned_cols=28 Identities=32% Similarity=0.331 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876544
No 296
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.71 E-value=1.3e-07 Score=82.38 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=34.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-CeEEEEecC
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSN-ANVVFMCNR 57 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-~~v~yi~~e 57 (233)
..+|.+++|.||+|+||||++..++.......| .+|.+++++
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D 176 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTD 176 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 357899999999999999999999987664445 688888755
No 297
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.71 E-value=2.2e-07 Score=75.96 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 6999999999999999999998876543
No 298
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.71 E-value=1e-07 Score=79.85 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 299
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.71 E-value=1e-07 Score=76.12 Aligned_cols=28 Identities=36% Similarity=0.415 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999998876544
No 300
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=7e-08 Score=81.44 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 7999999999999999999998876544
No 301
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.71 E-value=1.3e-07 Score=77.03 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|+|||||++.++...
T Consensus 29 ~~G~~~~I~G~nGsGKStLl~~l~G~~ 55 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLTLIGGLR 55 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999999999887544
No 302
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.71 E-value=1.2e-07 Score=78.14 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|+|||||++.++....
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6999999999999999999998876543
No 303
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.71 E-value=4.3e-08 Score=78.11 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
+++.++.|.||+|||||||++.+-.-
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhh
Confidence 68999999999999999999977543
No 304
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=98.71 E-value=3.9e-07 Score=76.05 Aligned_cols=175 Identities=12% Similarity=0.147 Sum_probs=93.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccc------------cccc-cCC---------c
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPY------------LSQS-IDP---------S 74 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~------------~~~~-~~~---------~ 74 (233)
.+|..++|.|+||+|||+|+.+++...+...+.+|+|++.|..-+.-..+ +..+ +.. .
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~~ 96 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAAA 96 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHHH
Confidence 58999999999999999999999999995557999999987211110000 0000 000 0
Q ss_pred hhhhc-ceEEEEec--CHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHh
Q 041690 75 SHVFK-LIQMKYVE--DDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHA 151 (233)
Q Consensus 75 ~~~~~-~i~~~~~~--~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l 151 (233)
....+ .+.+.... ..+.+......+.......++||||-++.+-... ...+ +... +..+...++.+
T Consensus 97 ~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~----~~~~---~~~~----~~~i~~~Lk~l 165 (259)
T PF03796_consen 97 EKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSED----SSDN---RRQE----IGEISRELKAL 165 (259)
T ss_dssp HHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSC----SSSC---CHHH----HHHHHHHHHHH
T ss_pred HHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCC----CCCC---HHHH----HHHHHHHHHHH
Confidence 00111 23332221 2445555555443332447899999998776631 1111 1111 12233334433
Q ss_pred h-hcCCcEEEEeecCCC------CCchhH-----HHHHHhhccceEEEecC----------CccEEEeeccCc
Q 041690 152 N-KKSPCKLLLSDTHLG------NSTRLL-----YIYKRWISSIFTVKGDG----------PGSFLLRNKNYS 202 (233)
Q Consensus 152 ~-~~~~~vlvi~~~~~~------~~~~~~-----~~~~~~~~~~~~i~~~~----------~~~~~l~~~~~~ 202 (233)
+ +.+.+++++++.++. ..|... -.++...+.++.+..+. .-+..+.+.++.
T Consensus 166 A~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~~~~~~~~~~l~v~KnR~G 238 (259)
T PF03796_consen 166 AKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDEDRDDKGEAELIVAKNRNG 238 (259)
T ss_dssp HHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHCCSSCTTEEEEEEEEESSS
T ss_pred HHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhccchhhccccCCCCeEEEEEEecCCC
Confidence 3 347777777776642 123211 13567778888888631 113566666654
No 305
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.71 E-value=1.5e-07 Score=77.96 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|||||||++.++..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 69999999999999999999988765
No 306
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=1.3e-07 Score=81.57 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~ 66 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIET 66 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCCC
Confidence 7999999999999999999998876544
No 307
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=1.4e-07 Score=79.24 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876544
No 308
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.70 E-value=8.6e-08 Score=87.87 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876554
No 309
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.70 E-value=8.8e-08 Score=79.81 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=28.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeE
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANV 51 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v 51 (233)
..+|..+.|.||+|||||||++.++.... ...+.+
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-p~~G~I 57 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLK-PNLGKF 57 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceE
Confidence 57999999999999999999998887665 334444
No 310
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=1.4e-07 Score=79.20 Aligned_cols=28 Identities=14% Similarity=0.006 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|+|||||++.++....
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876544
No 311
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=7.9e-08 Score=80.94 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|+|||||++.++....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998886544
No 312
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.70 E-value=1.5e-07 Score=85.85 Aligned_cols=146 Identities=17% Similarity=0.233 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-------CCCeEEEEecCCcccccc--cc--cccc---cCCc--hhhhcc
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-------SNANVVFMCNRSRLQSKR--PY--LSQS---IDPS--SHVFKL 80 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-------~g~~v~yi~~e~~l~~~~--~~--~~~~---~~~~--~~~~~~ 80 (233)
++|..++|.||+|||||+|.+.+|....-. .+...+|+..+..+.... +. ++.. ..+. ..++..
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~ 496 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHK 496 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 699999999999999999999888655411 234478887663222211 00 0110 1000 011111
Q ss_pred eEE--------------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHH
Q 041690 81 IQM--------------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYN 146 (233)
Q Consensus 81 i~~--------------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 146 (233)
+.. .-++.++..+-.|+.+-.++ |+++|+||.++-++.. .... ++.
T Consensus 497 vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~k--P~~v~LDEATsALDe~-------------~e~~-----l~q 556 (604)
T COG4178 497 VGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHK--PKWVFLDEATSALDEE-------------TEDR-----LYQ 556 (604)
T ss_pred cCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcC--CCEEEEecchhccChH-------------HHHH-----HHH
Confidence 111 23455667777777665444 9999999999999841 1111 334
Q ss_pred HHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceEEEecCCc
Q 041690 147 AITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKGDGPG 192 (233)
Q Consensus 147 ~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 192 (233)
.++.- =.+.++|-|++.+ .+.++....+++...+.+
T Consensus 557 ~l~~~-lp~~tvISV~Hr~---------tl~~~h~~~l~l~~~~~~ 592 (604)
T COG4178 557 LLKEE-LPDATVISVGHRP---------TLWNFHSRQLELLDDAGG 592 (604)
T ss_pred HHHhh-CCCCEEEEeccch---------hhHHHHhhheeecccccc
Confidence 44210 0355555555543 355566667777765443
No 313
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.70 E-value=1.4e-07 Score=81.51 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.|++|||||||++.++....
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~ 67 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 7999999999999999999998886554
No 314
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.69 E-value=1.7e-07 Score=77.68 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=24.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
..+|..+.|.||+|||||||++.++...
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3699999999999999999999887543
No 315
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.69 E-value=1.1e-07 Score=82.24 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~ 72 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLVK 72 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 7999999999999999999998886544
No 316
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.69 E-value=1.4e-07 Score=78.57 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998886543
No 317
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.68 E-value=1.7e-07 Score=77.34 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=69.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCC-ccc--ccccccccc---cCCchhhhcceEEEEecCH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRS-RLQ--SKRPYLSQS---IDPSSHVFKLIQMKYVEDD 89 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~-~l~--~~~~~~~~~---~~~~~~~~~~i~~~~~~~~ 89 (233)
..+|..+.|.|++||||||+++.++.-.. ..++.+.|=...- .+. ...+.+... .+..+..+.+-- ..++.+
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~-pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryP-helSGG 113 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEE-PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYP-HELSGG 113 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcC-CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCC-cccCch
Confidence 37999999999999999999998876554 4455566532110 000 001111110 011111100000 223334
Q ss_pred HHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhc-CCcEEEEeec
Q 041690 90 EEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKK-SPCKLLLSDT 164 (233)
Q Consensus 90 ~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~vlvi~~~ 164 (233)
+..+-.++.+...+ |++||.||+.+.++. . .+.+ +.+++..+.+. +.+.++|++.
T Consensus 114 QrQRi~IARALal~--P~liV~DEpvSaLDv-------------S--iqaq---IlnLL~dlq~~~~lt~lFIsHD 169 (268)
T COG4608 114 QRQRIGIARALALN--PKLIVADEPVSALDV-------------S--VQAQ---ILNLLKDLQEELGLTYLFISHD 169 (268)
T ss_pred hhhhHHHHHHHhhC--CcEEEecCchhhcch-------------h--HHHH---HHHHHHHHHHHhCCeEEEEEEE
Confidence 55555555444223 999999999999984 1 1111 45555555444 7777888764
No 318
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=9.9e-08 Score=87.07 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 29 RAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876543
No 319
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.68 E-value=1.3e-07 Score=82.96 Aligned_cols=28 Identities=29% Similarity=0.218 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 48 ~~Gei~~I~G~nGsGKSTLlr~L~Gl~~ 75 (382)
T TIGR03415 48 EEGEICVLMGLSGSGKSSLLRAVNGLNP 75 (382)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 6999999999999999999998876554
No 320
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.68 E-value=1.5e-07 Score=84.43 Aligned_cols=39 Identities=26% Similarity=0.211 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhh-cCCCeEEEEecC
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCAS-QSNANVVFMCNR 57 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~-~~g~~v~yi~~e 57 (233)
...++|+|++|+|||+|++.++..+.. ..+.+++|++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~ 180 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD 180 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 356899999999999999988876552 347899999744
No 321
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=3.1e-07 Score=75.34 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|+|||||++.++....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 36999999999999999999998876554
No 322
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.67 E-value=1.5e-07 Score=83.79 Aligned_cols=34 Identities=29% Similarity=0.270 Sum_probs=25.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
....++|+|||||||||+++.++... +..++.++
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~----~~~~~~l~ 68 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGAT----DAPFEALS 68 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----CCCEEEEe
Confidence 44578999999999999999887643 34455543
No 323
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.67 E-value=1.3e-07 Score=87.78 Aligned_cols=27 Identities=33% Similarity=0.276 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 799999999999999999999888766
No 324
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.67 E-value=1.8e-07 Score=76.93 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 7999999999999999999998886544
No 325
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.67 E-value=1.7e-07 Score=84.80 Aligned_cols=28 Identities=21% Similarity=0.058 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 48 ~~GEivgIiGpNGSGKSTLLkiLaGLl~ 75 (549)
T PRK13545 48 PEGEIVGIIGLNGSGKSTLSNLIAGVTM 75 (549)
T ss_pred eCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876544
No 326
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=1.1e-07 Score=77.70 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 7999999999999999999998886554
No 327
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.67 E-value=4e-07 Score=74.02 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|....|+||+|+|||||++.++....
T Consensus 55 ~~ge~W~I~G~NGsGKTTLL~ll~~~~~ 82 (257)
T COG1119 55 NPGEHWAIVGPNGAGKTTLLSLLTGEHP 82 (257)
T ss_pred cCCCcEEEECCCCCCHHHHHHHHhcccC
Confidence 7999999999999999999998876655
No 328
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.66 E-value=2e-07 Score=84.77 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 22 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 49 (491)
T PRK10982 22 RPHSIHALMGENGAGKSTLLKCLFGIYQ 49 (491)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 6999999999999999999998876443
No 329
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.8e-07 Score=85.51 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=39.7
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++.. .... +++.+..+.+.+.+++++++... ....+.+.++.
T Consensus 428 p~lLlLDEPt~~LD~~-------------~~~~-----l~~~l~~l~~~g~tvi~vsHd~~--------~~~~~~d~i~~ 481 (510)
T PRK09700 428 PEVIIFDEPTRGIDVG-------------AKAE-----IYKVMRQLADDGKVILMVSSELP--------EIITVCDRIAV 481 (510)
T ss_pred CCEEEECCCCCCcCHH-------------HHHH-----HHHHHHHHHHCCCEEEEEcCCHH--------HHHhhCCEEEE
Confidence 9999999999999841 1112 56666666566777777765321 56677888888
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+..
T Consensus 482 l~~ 484 (510)
T PRK09700 482 FCE 484 (510)
T ss_pred EEC
Confidence 874
No 330
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.66 E-value=1.6e-07 Score=78.75 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998875443
No 331
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.8e-07 Score=85.22 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 55 (501)
T PRK11288 28 RAGQVHALMGENGAGKSTLLKILSGNYQ 55 (501)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876443
No 332
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=1.9e-07 Score=78.99 Aligned_cols=28 Identities=18% Similarity=0.019 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 6999999999999999999998886654
No 333
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.65 E-value=2.2e-07 Score=83.81 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+|..+.|.|++|||||||++.++.... ..++.+.|..
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~-P~~G~i~~~g 352 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLP-PSSGSIIFDG 352 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEEeC
Confidence 7999999999999999999998886665 4566666654
No 334
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.65 E-value=1.6e-07 Score=80.24 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+.+++|+||+|+|||+|+..++..++ ..|.+|.|+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~~~~ 191 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA-KKGVSSTLLH 191 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEE
Confidence 467899999999999999999999998 7789999985
No 335
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.65 E-value=2.4e-07 Score=74.69 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=29.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEE
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVF 53 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~y 53 (233)
.++|.++.|.||+|+||||+++.++-... ...+.+.|
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~-~~~G~I~~ 62 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMGLVR-PRSGRIIF 62 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeeEEE
Confidence 37999999999999999999998876555 33444544
No 336
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=2.1e-07 Score=80.39 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=25.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
..+|..+.|.||+|||||||++.++...
T Consensus 30 i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 30 LTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 3799999999999999999999887654
No 337
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.64 E-value=1.7e-07 Score=86.88 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 6999999999999999999998887665
No 338
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.64 E-value=2.8e-07 Score=77.53 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|||||||++.++....
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37999999999999999999998876543
No 339
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.64 E-value=2.1e-07 Score=77.24 Aligned_cols=28 Identities=25% Similarity=0.171 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998876544
No 340
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.63 E-value=2.9e-07 Score=84.29 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
..+|..+.|.||+|||||||++.++...
T Consensus 23 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 23 IEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3799999999999999999999988764
No 341
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=3.1e-07 Score=76.19 Aligned_cols=27 Identities=37% Similarity=0.443 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 699999999999999999999887654
No 342
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.63 E-value=1.8e-07 Score=75.16 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..++|+||+|+|||||+++++..
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHHH
Confidence 46789999999999999999999843
No 343
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.63 E-value=3.1e-07 Score=76.92 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=25.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+.|..+.+.||+|||||||++.+|--..
T Consensus 25 i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~ 53 (345)
T COG1118 25 IKSGELVALLGPSGAGKSTLLRIIAGLET 53 (345)
T ss_pred ecCCcEEEEECCCCCcHHHHHHHHhCcCC
Confidence 36999999999999999999998875443
No 344
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.63 E-value=2.2e-07 Score=88.28 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcC------CCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQS------NANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEE 91 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~------g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 91 (233)
....++|+||||||||+++..++...+... +..+++++... +... ....+ +..+.
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~-l~a~----~~~~g--------------~~e~~ 262 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS-LLAG----TKYRG--------------DFEER 262 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH-Hhhh----ccccc--------------hHHHH
Confidence 456789999999999999999998876221 33444443110 0000 00111 11567
Q ss_pred HHHHHHHhcccCCCCcEEEEeCCCccccc
Q 041690 92 IKKYFAAFHQHDKIPTAVVVDDFGDLFDD 120 (233)
Q Consensus 92 l~~~~~~~~~~~~~p~iIvIDei~~~~~~ 120 (233)
++++++.+.. ..+.++||||++.+...
T Consensus 263 l~~i~~~~~~--~~~~ILfiDEih~l~~~ 289 (731)
T TIGR02639 263 LKAVVSEIEK--EPNAILFIDEIHTIVGA 289 (731)
T ss_pred HHHHHHHHhc--cCCeEEEEecHHHHhcc
Confidence 8888887652 23789999999999874
No 345
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.7e-07 Score=72.17 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEE
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVF 53 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~y 53 (233)
.+|..+.|.||+|+|||||++.++--.. ...+.|.|
T Consensus 26 ~~Ge~~~i~G~NG~GKTtLLRilaGLl~-p~~G~v~~ 61 (209)
T COG4133 26 NAGEALQITGPNGAGKTTLLRILAGLLR-PDAGEVYW 61 (209)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcccC-CCCCeEEe
Confidence 6999999999999999999998886655 43444554
No 346
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.63 E-value=9.1e-07 Score=70.89 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=22.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
..+| .+.|.||+|+|||||+..++...
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 3567 99999999999999999887543
No 347
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.62 E-value=5.4e-07 Score=73.51 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 7999999999999999999998886543
No 348
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.62 E-value=1.1e-07 Score=78.33 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=25.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.++|.++.+.||+|+||||+++.+..-..
T Consensus 47 IP~G~ivgflGaNGAGKSTtLKmLTGll~ 75 (325)
T COG4586 47 IPKGEIVGFLGANGAGKSTTLKMLTGLLL 75 (325)
T ss_pred cCCCcEEEEEcCCCCcchhhHHHHhCccc
Confidence 37999999999999999999998765444
No 349
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.62 E-value=2.4e-07 Score=84.46 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 25 ~~Ge~~~liG~nGsGKSTLl~~i~G~~ 51 (500)
T TIGR02633 25 RPGECVGLCGENGAGKSTLMKILSGVY 51 (500)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 799999999999999999999887644
No 350
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.62 E-value=3.9e-07 Score=75.43 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 7999999999999999999998876543
No 351
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.62 E-value=1.5e-07 Score=88.35 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.|++|||||||++.+..-..
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998775544
No 352
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.5e-07 Score=82.43 Aligned_cols=133 Identities=18% Similarity=0.159 Sum_probs=70.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFAA 98 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 98 (233)
-++.|||||||||||+|..++|..+ +..|.-+. +.+ +.....++.++..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLe----Lt~-----------------------v~~n~dLr~LL~~ 283 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLE----LTE-----------------------VKLDSDLRHLLLA 283 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----CCceEEee----ecc-----------------------ccCcHHHHHHHHh
Confidence 3679999999999999999766533 34444432 000 0012347777764
Q ss_pred hcccCCCCcEEEEeCCCcccccccccccc-CCcchhhHHHHHHHHHHHHHHHHhh-hcCCcEEEEeecCCCCCchhHHHH
Q 041690 99 FHQHDKIPTAVVVDDFGDLFDDRTCQERY-TNPRGRDLAMVRTLALCYNAITHAN-KKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 99 ~~~~~~~p~iIvIDei~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~l~-~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
.. .-+||||.+|+.-+......... ...++.... -+|.-|++.+..+- ..|.--|++-+||..+..+.+.+.
T Consensus 284 t~----~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~--VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlR 357 (457)
T KOG0743|consen 284 TP----NKSILLIEDIDCSFDLRERRKKKKENFEGDLSR--VTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLR 357 (457)
T ss_pred CC----CCcEEEEeecccccccccccccccccccCCcce--eehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcC
Confidence 42 25899999999988753111110 000100011 12222334433222 233345556666665544444455
Q ss_pred HHhhccceEEEe
Q 041690 177 KRWISSIFTVKG 188 (233)
Q Consensus 177 ~~~~~~~~~i~~ 188 (233)
+.++|..+++..
T Consensus 358 pGRmDmhI~mgy 369 (457)
T KOG0743|consen 358 PGRMDMHIYMGY 369 (457)
T ss_pred CCcceeEEEcCC
Confidence 667776666654
No 353
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=3.4e-07 Score=75.80 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|+|||||++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 799999999999999999999887643
No 354
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.61 E-value=2.5e-07 Score=84.83 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 33 ~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 33 EAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 6999999999999999999998886554
No 355
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.61 E-value=4.9e-07 Score=82.41 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=41.1
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++.. .+.. +++.+..+++.+.+++++++.. ..+..+.+.++.
T Consensus 415 p~lllLDEPt~~LD~~-------------~~~~-----l~~~l~~l~~~g~tviivsHd~--------~~~~~~~d~i~~ 468 (501)
T PRK11288 415 MKVILLDEPTRGIDVG-------------AKHE-----IYNVIYELAAQGVAVLFVSSDL--------PEVLGVADRIVV 468 (501)
T ss_pred CCEEEEcCCCCCCCHh-------------HHHH-----HHHHHHHHHhCCCEEEEECCCH--------HHHHhhCCEEEE
Confidence 9999999999999841 1222 6667777767778877776532 256778898888
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+..
T Consensus 469 l~~ 471 (501)
T PRK11288 469 MRE 471 (501)
T ss_pred EEC
Confidence 874
No 356
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=4.9e-07 Score=75.15 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 6999999999999999999998876543
No 357
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.61 E-value=4.4e-07 Score=84.30 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 6999999999999999999998876555
No 358
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=5.8e-07 Score=74.59 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 6999999999999999999998876543
No 359
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.60 E-value=2.8e-07 Score=87.06 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=25.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876655
No 360
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.60 E-value=1.4e-07 Score=78.82 Aligned_cols=37 Identities=30% Similarity=0.360 Sum_probs=28.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEE
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVF 53 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~y 53 (233)
.-..+.|+|||||||||+.++.++.++-.++-.++-+
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 3567899999999999999999998776433334433
No 361
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.60 E-value=4.9e-07 Score=78.05 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEE
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFM 54 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi 54 (233)
.+...++|+||||||||++++.++.... ..+.++
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~----~~~~~~ 82 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMG----VNIRIT 82 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhC----CCeEEE
Confidence 3456899999999999999998877443 445544
No 362
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.59 E-value=1.9e-06 Score=75.37 Aligned_cols=95 Identities=17% Similarity=0.243 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
.+..++|.||+|+||||++..+|..+. ..|.++.++++...-....+.+..+.+. ..+.+........+.+.+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~RiaAvEQLk~yae~-----lgipv~v~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKT-----IGFEVIAVRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHhhh-----cCCcEEecCCHHHHHHHHH
Confidence 457899999999999999999998877 6688899988652100111111111110 0222222334556666665
Q ss_pred HhcccCCCCcEEEEeCCCcccc
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFD 119 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~ 119 (233)
.+... ...++|+||.......
T Consensus 314 ~lk~~-~~~DvVLIDTaGRs~k 334 (436)
T PRK11889 314 YFKEE-ARVDYILIDTAGKNYR 334 (436)
T ss_pred HHHhc-cCCCEEEEeCccccCc
Confidence 44321 1379999999866443
No 363
>PHA00729 NTP-binding motif containing protein
Probab=98.59 E-value=2.5e-07 Score=75.07 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
..++|+|+||+|||+||..++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998765
No 364
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.59 E-value=5.3e-07 Score=74.89 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|||||||++.++..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 69999999999999999999988754
No 365
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.58 E-value=2.8e-07 Score=86.10 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 40 ~~Ge~~~lvG~nGsGKSTLl~~l~Gll~ 67 (623)
T PRK10261 40 QRGETLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 7999999999999999999998886554
No 366
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=7.1e-07 Score=74.92 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|||||||++.++..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 79999999999999999999988764
No 367
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.58 E-value=3.7e-07 Score=84.44 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+||||||++..+.....
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 7999999999999999999998876555
No 368
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=5e-07 Score=77.95 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=25.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|.++.|.||+|||||||++.++....
T Consensus 30 i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 30 VKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 37999999999999999999998886543
No 369
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.57 E-value=3.1e-07 Score=88.46 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=53.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc------CCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ------SNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDE 90 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~------~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 90 (233)
.....++|+||||||||+++..++...... .+.++++++....+.. . ...+. ..+
T Consensus 197 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag-~----~~~g~--------------~e~ 257 (857)
T PRK10865 197 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG-A----KYRGE--------------FEE 257 (857)
T ss_pred CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhc-c----chhhh--------------hHH
Confidence 355678899999999999999999877621 2456666542110000 0 00001 145
Q ss_pred HHHHHHHHhcccCCCCcEEEEeCCCccccc
Q 041690 91 EIKKYFAAFHQHDKIPTAVVVDDFGDLFDD 120 (233)
Q Consensus 91 ~l~~~~~~~~~~~~~p~iIvIDei~~~~~~ 120 (233)
.++.++..+... ..+.++||||++.+...
T Consensus 258 ~lk~~~~~~~~~-~~~~ILfIDEih~l~~~ 286 (857)
T PRK10865 258 RLKGVLNDLAKQ-EGNVILFIDELHTMVGA 286 (857)
T ss_pred HHHHHHHHHHHc-CCCeEEEEecHHHhccC
Confidence 677777765322 24789999999999874
No 370
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.57 E-value=2.8e-07 Score=76.37 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=47.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKY 95 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 95 (233)
.+.-.++|++||||.||||||..+|.+.. .++-..+ .+ .+ +...++..+
T Consensus 49 ~e~lDHvLl~GPPGlGKTTLA~IIA~Emg----vn~k~ts-------Gp-~l-------------------eK~gDlaai 97 (332)
T COG2255 49 GEALDHVLLFGPPGLGKTTLAHIIANELG----VNLKITS-------GP-AL-------------------EKPGDLAAI 97 (332)
T ss_pred CCCcCeEEeeCCCCCcHHHHHHHHHHHhc----CCeEecc-------cc-cc-------------------cChhhHHHH
Confidence 36778999999999999999998887544 3444332 11 11 113455555
Q ss_pred HHHhcccCCCCcEEEEeCCCccccc
Q 041690 96 FAAFHQHDKIPTAVVVDDFGDLFDD 120 (233)
Q Consensus 96 ~~~~~~~~~~p~iIvIDei~~~~~~ 120 (233)
+..+. + -+++|||||..+-+.
T Consensus 98 Lt~Le--~--~DVLFIDEIHrl~~~ 118 (332)
T COG2255 98 LTNLE--E--GDVLFIDEIHRLSPA 118 (332)
T ss_pred HhcCC--c--CCeEEEehhhhcChh
Confidence 55443 2 589999999998874
No 371
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=4.8e-07 Score=83.01 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 25 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 25 GGGNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 372
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.57 E-value=7e-07 Score=74.86 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 7999999999999999999998886543
No 373
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.57 E-value=7.3e-07 Score=72.38 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 6999999999999999999998876543
No 374
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.57 E-value=8.2e-07 Score=69.22 Aligned_cols=75 Identities=8% Similarity=0.119 Sum_probs=49.1
Q ss_pred ecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecC
Q 041690 86 VEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTH 165 (233)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~ 165 (233)
++..+..+..++.+.. ..|+++++||+++.++.. ++ .+++..++.+++.|.+.+++++..
T Consensus 153 LSGGQQQR~aIARaLa--meP~vmLFDEPTSALDPE---------------lV---gEVLkv~~~LAeEgrTMv~VTHEM 212 (256)
T COG4598 153 LSGGQQQRVAIARALA--MEPEVMLFDEPTSALDPE---------------LV---GEVLKVMQDLAEEGRTMVVVTHEM 212 (256)
T ss_pred cCchHHHHHHHHHHHh--cCCceEeecCCcccCCHH---------------HH---HHHHHHHHHHHHhCCeEEEEeeeh
Confidence 3445555555555442 239999999999999841 12 235667777888999999987742
Q ss_pred CCCCchhHHHHHHhhccceEEEe
Q 041690 166 LGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
...++...+++.+..
T Consensus 213 --------~FAR~Vss~v~fLh~ 227 (256)
T COG4598 213 --------GFARDVSSHVIFLHQ 227 (256)
T ss_pred --------hHHHhhhhheEEeec
Confidence 144555666666653
No 375
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=5.1e-07 Score=74.97 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 699999999999999999999887654
No 376
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.57 E-value=5e-08 Score=72.42 Aligned_cols=38 Identities=29% Similarity=0.593 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc----CCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ----SNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~----~g~~v~yi~ 55 (233)
.++.++|+||||+|||+++.+++...... ...+++|+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN 44 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE
Confidence 56789999999999999999999877521 156778876
No 377
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=98.56 E-value=3.2e-07 Score=78.23 Aligned_cols=139 Identities=17% Similarity=0.232 Sum_probs=75.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccc-cccccC-CchhhhcceEEEEecC----HH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPY-LSQSID-PSSHVFKLIQMKYVED----DE 90 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~-~~~~~~-~~~~~~~~i~~~~~~~----~~ 90 (233)
+-|..++|+||||||||.||+.++..+. ..+.+++||+++..+...+.. +..... ......+++....... ..
T Consensus 109 ~~g~~TEi~G~p~~GKtQlc~~~~v~~~-gge~~~l~IDs~s~~~~~~~~~ia~~~~~~~~~~~~~l~~~~~~~~~~~l~ 187 (326)
T KOG1433|consen 109 ETGSLTELVGPPGSGKTQLCHTLAVTCG-GGEGKVLYIDTESTFRLERLTEIAGRSGLRGRDTLSNLMLARAYNLDHQLQ 187 (326)
T ss_pred ccCceeEEecCCCccHHHHHHHHHHhcc-CCcceEEEEecchhcccchhhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHH
Confidence 6899999999999999999987776553 456789999988643222210 000000 0000111111100000 11
Q ss_pred HHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeec
Q 041690 91 EIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDT 164 (233)
Q Consensus 91 ~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~ 164 (233)
........+. +....++++|+.++.+.....+ +....+.+..+......+..+.+.....+||++.
T Consensus 188 ~~~~a~~~~~--~~~~~l~~vds~ta~~~~~~~g------~~~~~a~~~~~~~~~~~l~~la~~~g~~vvitn~ 253 (326)
T KOG1433|consen 188 LIQEAEIMIN--QSRVKLLIVDSATALYRTTFKG------RGELSARQMLLAKFLRSLKKLADEFGVAVVITNQ 253 (326)
T ss_pred HHHHHHHHhh--ccceeEEEeccccccccccccc------ccchHHHHHHHHHHHHHHHHHHHhcCceEEEecc
Confidence 1111111111 3457899999999999853222 3334444455555666666666654444466554
No 378
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=3.2e-07 Score=77.33 Aligned_cols=28 Identities=11% Similarity=-0.037 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 7999999999999999999998876554
No 379
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.56 E-value=3.3e-07 Score=86.90 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876655
No 380
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.56 E-value=4.6e-07 Score=77.26 Aligned_cols=27 Identities=37% Similarity=0.413 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
+...++|+||||||||+|++.++....
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999998876443
No 381
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.56 E-value=6.1e-07 Score=72.94 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 6999999999999999999998876544
No 382
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.56 E-value=9e-07 Score=77.98 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
++.+++|.||+||||||++..+|.......|.+|.+++.+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 4678999999999999999999986643668889988865
No 383
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.55 E-value=6.8e-07 Score=74.17 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|||||||++.++..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 69999999999999999999987753
No 384
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=1.1e-06 Score=73.18 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 699999999999999999999888654
No 385
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.55 E-value=5e-07 Score=84.46 Aligned_cols=27 Identities=15% Similarity=0.006 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 348 ~~Ge~~~lvG~nGsGKSTLlk~i~Gl~ 374 (623)
T PRK10261 348 WPGETLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 799999999999999999999887544
No 386
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.55 E-value=4.1e-07 Score=84.57 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=25.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.|++|||||||++.++....
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 7999999999999999999998876655
No 387
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.55 E-value=6.1e-07 Score=87.17 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
++|..+.|.||+||||||+..-+..-... ...-++++.+
T Consensus 377 ~~G~~valVG~SGsGKST~i~LL~RfydP--~~G~V~idG~ 415 (1228)
T KOG0055|consen 377 PSGQTVALVGPSGSGKSTLIQLLARFYDP--TSGEVLIDGE 415 (1228)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCceEEEcCc
Confidence 79999999999999999999876654442 2335666655
No 388
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.55 E-value=7.5e-07 Score=74.37 Aligned_cols=27 Identities=33% Similarity=0.593 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|+|||||++.++...
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 699999999999999999999887654
No 389
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.54 E-value=3.8e-07 Score=83.99 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=25.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998886655
No 390
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.54 E-value=9.6e-07 Score=74.24 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|+|||||++.++...
T Consensus 49 ~~Ge~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 49 PKNRVTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 699999999999999999999887653
No 391
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=8.2e-07 Score=73.72 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=25.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
..+|..+.|.||+|||||||++.++...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3799999999999999999999888654
No 392
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.54 E-value=4.8e-07 Score=82.49 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=39.5
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++.. .... +++.+..+.++|.+++++++.. ..+..+.+.++.
T Consensus 414 p~lllLDEPt~~LD~~-------------~~~~-----l~~~l~~~~~~g~tviivtHd~--------~~~~~~~d~v~~ 467 (501)
T PRK10762 414 PKVLILDEPTRGVDVG-------------AKKE-----IYQLINQFKAEGLSIILVSSEM--------PEVLGMSDRILV 467 (501)
T ss_pred CCEEEEcCCCCCCCHh-------------HHHH-----HHHHHHHHHHCCCEEEEEcCCH--------HHHHhhCCEEEE
Confidence 9999999999999841 1111 5666666666677777775531 156677888888
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+..
T Consensus 468 l~~ 470 (501)
T PRK10762 468 MHE 470 (501)
T ss_pred EEC
Confidence 874
No 393
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=4.3e-07 Score=76.69 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 61 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNALLI 61 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998875544
No 394
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=7.8e-07 Score=70.99 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=31.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEE
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFM 54 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi 54 (233)
..+|.++.|.||+|+|||||++.++-+.. ..++.+.|-
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~-p~~G~v~~~ 61 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELS-PDSGEVTLN 61 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccC-CCCCeEeeC
Confidence 37999999999999999999999887776 445556553
No 395
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.53 E-value=3.9e-07 Score=81.65 Aligned_cols=42 Identities=7% Similarity=0.159 Sum_probs=34.0
Q ss_pred CCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeec
Q 041690 105 IPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDT 164 (233)
Q Consensus 105 ~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~ 164 (233)
.+++|++||+++.+.. .+ -..+++.++.++++|..++.|++.
T Consensus 163 ~arllIlDEPTaaLt~------------~E------~~~Lf~~ir~Lk~~Gv~ii~ISHr 204 (500)
T COG1129 163 DARVLILDEPTAALTV------------KE------TERLFDLIRRLKAQGVAIIYISHR 204 (500)
T ss_pred CCCEEEEcCCcccCCH------------HH------HHHHHHHHHHHHhCCCEEEEEcCc
Confidence 4889999999999984 11 122788899999999999999874
No 396
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.53 E-value=5.5e-07 Score=82.30 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=39.8
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++.. .... +++.+..+++.+.++|++++.. ..+..+.+.++.
T Consensus 422 p~lLlLDEPt~gLD~~-------------~~~~-----l~~~l~~l~~~g~tiIivsHd~--------~~i~~~~d~i~~ 475 (510)
T PRK15439 422 PQLLIVDEPTRGVDVS-------------ARND-----IYQLIRSIAAQNVAVLFISSDL--------EEIEQMADRVLV 475 (510)
T ss_pred CCEEEECCCCcCcChh-------------HHHH-----HHHHHHHHHhCCCEEEEECCCH--------HHHHHhCCEEEE
Confidence 9999999999999841 1112 5666666666677777775532 156678898888
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+..
T Consensus 476 l~~ 478 (510)
T PRK15439 476 MHQ 478 (510)
T ss_pred EEC
Confidence 874
No 397
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.53 E-value=1.4e-06 Score=72.53 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (257)
T cd03288 45 KPGQKVGICGRTGSGKSSLSLAFFRMVD 72 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcccC
Confidence 6999999999999999999998886544
No 398
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.53 E-value=1e-06 Score=80.24 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=39.9
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++.. .+.. +++.+..+.+.+.+++++++.. ..+.++.+.++.
T Consensus 422 p~lllLDEPt~~LD~~-------------~~~~-----l~~~l~~l~~~g~tviivsHd~--------~~~~~~~d~v~~ 475 (500)
T TIGR02633 422 PRVLILDEPTRGVDVG-------------AKYE-----IYKLINQLAQEGVAIIVVSSEL--------AEVLGLSDRVLV 475 (500)
T ss_pred CCEEEEcCCCCCcCHh-------------HHHH-----HHHHHHHHHhCCCEEEEECCCH--------HHHHHhCCEEEE
Confidence 9999999999999841 1112 5566666666677777775532 156778898988
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+..
T Consensus 476 l~~ 478 (500)
T TIGR02633 476 IGE 478 (500)
T ss_pred EEC
Confidence 874
No 399
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.53 E-value=5.7e-07 Score=83.35 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876655
No 400
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.53 E-value=1.1e-06 Score=73.94 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|||||||++.++..
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 69999999999999999999988743
No 401
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.53 E-value=4.5e-07 Score=85.83 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999998876554
No 402
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=4.9e-07 Score=83.28 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
+||.++.|.||+|+||||++.-+..-..
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~rfY~ 519 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIASLLLRFYD 519 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 7999999999999999999986654443
No 403
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=6.8e-07 Score=81.61 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=39.9
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++.. .. ..+++.+..+++++.+++++++.. ..+.++.+.++.
T Consensus 424 p~lllLDEPt~~LD~~-------------~~-----~~l~~~l~~l~~~g~tvi~~sHd~--------~~~~~~~d~v~~ 477 (506)
T PRK13549 424 PKILILDEPTRGIDVG-------------AK-----YEIYKLINQLVQQGVAIIVISSEL--------PEVLGLSDRVLV 477 (506)
T ss_pred CCEEEEcCCCCCcCHh-------------HH-----HHHHHHHHHHHHCCCEEEEECCCH--------HHHHHhCCEEEE
Confidence 9999999999999841 11 125666666666677777776532 156778888888
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+..
T Consensus 478 l~~ 480 (506)
T PRK13549 478 MHE 480 (506)
T ss_pred EEC
Confidence 874
No 404
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.53 E-value=5.6e-07 Score=83.54 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 386 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVYD 386 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCCC
Confidence 6999999999999999999998876554
No 405
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.53 E-value=9.8e-07 Score=73.20 Aligned_cols=26 Identities=35% Similarity=0.416 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|||||||++.++..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 69999999999999999999988753
No 406
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.53 E-value=1.2e-06 Score=72.72 Aligned_cols=25 Identities=40% Similarity=0.658 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~ 41 (233)
.+|..+.|.||+|||||||++.++.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999999998874
No 407
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.52 E-value=4.3e-07 Score=83.31 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876554
No 408
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.52 E-value=3.3e-07 Score=78.44 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+-..++++|||||||||||+.++.... .....||. .+... .....++++|
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk---~~Syrfve------lSAt~--------------------a~t~dvR~if 210 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSK---KHSYRFVE------LSATN--------------------AKTNDVRDIF 210 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcC---CCceEEEE------Eeccc--------------------cchHHHHHHH
Confidence 3556789999999999999998876444 22244443 11100 0145677777
Q ss_pred HHhccc---CCCCcEEEEeCCCccccc
Q 041690 97 AAFHQH---DKIPTAVVVDDFGDLFDD 120 (233)
Q Consensus 97 ~~~~~~---~~~p~iIvIDei~~~~~~ 120 (233)
+.+... ..+-.++|||||..|-..
T Consensus 211 e~aq~~~~l~krkTilFiDEiHRFNks 237 (554)
T KOG2028|consen 211 EQAQNEKSLTKRKTILFIDEIHRFNKS 237 (554)
T ss_pred HHHHHHHhhhcceeEEEeHHhhhhhhh
Confidence 765432 233679999999988773
No 409
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.52 E-value=1.2e-06 Score=82.47 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-------CeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSN-------ANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-------~~v~yi~~e 57 (233)
++|..+.|.||+|||||||++.++.......| ..+.|+..+
T Consensus 476 ~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~ 523 (659)
T TIGR00954 476 PSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQR 523 (659)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCC
Confidence 69999999999999999999988875542222 235666655
No 410
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.52 E-value=1.9e-06 Score=69.85 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~ 41 (233)
.+|..+.|.||+|||||||+..++.
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHhee
Confidence 4578999999999999999998764
No 411
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=1.3e-06 Score=73.17 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|||||||++.++..
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 69999999999999999999988764
No 412
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.52 E-value=7.1e-07 Score=82.55 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|+|||||++.++....
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 6999999999999999999998876554
No 413
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.52 E-value=1.2e-06 Score=74.00 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=31.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-----CeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSN-----ANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-----~~v~yi~~e 57 (233)
.+|..+.|.||+|+|||||++.++.......| ..+.|+..+
T Consensus 61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~ 106 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQF 106 (282)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCc
Confidence 69999999999999999999988765442223 235666655
No 414
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=1.7e-06 Score=71.65 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|.++.|.||+|+|||||++.++...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 699999999999999999999887644
No 415
>PRK08760 replicative DNA helicase; Provisional
Probab=98.51 E-value=1.7e-06 Score=78.31 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=37.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+|..++|.|+||+|||+|+.++|.+.+...|.+|+|++-|
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE 267 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME 267 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc
Confidence 69999999999999999999999998885668899999876
No 416
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.51 E-value=5.5e-07 Score=82.46 Aligned_cols=29 Identities=24% Similarity=0.109 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|||||||++.++....
T Consensus 307 i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~ 335 (520)
T TIGR03269 307 VKEGEIFGIVGTSGAGKTTLSKIIAGVLE 335 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37999999999999999999998875543
No 417
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=5.4e-07 Score=84.40 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-------CeEEEEecCC--ccccc---ccccccccC-C----chhhhc
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSN-------ANVVFMCNRS--RLQSK---RPYLSQSID-P----SSHVFK 79 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-------~~v~yi~~e~--~l~~~---~~~~~~~~~-~----~~~~~~ 79 (233)
.+|..+.|.||+|||||||++.++.......| .++.|++... .+... ...+..... . ....+.
T Consensus 336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 415 (638)
T PRK10636 336 VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLG 415 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHH
Confidence 69999999999999999999988865432222 2455665431 01000 000000000 0 001111
Q ss_pred ceEE---------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHH
Q 041690 80 LIQM---------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITH 150 (233)
Q Consensus 80 ~i~~---------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 150 (233)
.+.+ ..++.++..+-.++.+-. ..|.++++||+++-++.. ... .+.+.+..
T Consensus 416 ~~~l~~~~~~~~~~~LSgGekqRl~La~~l~--~~p~lLlLDEPt~~LD~~-------------~~~-----~l~~~L~~ 475 (638)
T PRK10636 416 GFGFQGDKVTEETRRFSGGEKARLVLALIVW--QRPNLLLLDEPTNHLDLD-------------MRQ-----ALTEALID 475 (638)
T ss_pred HcCCChhHhcCchhhCCHHHHHHHHHHHHHh--cCCCEEEEcCCCCCCCHH-------------HHH-----HHHHHHHH
Confidence 1111 122334444444443332 239999999999999841 111 14555544
Q ss_pred hhhcCCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 151 ANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 151 l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+ +.++|++++. ...+.++.+.++.+..
T Consensus 476 ~---~gtvi~vSHd--------~~~~~~~~d~i~~l~~ 502 (638)
T PRK10636 476 F---EGALVVVSHD--------RHLLRSTTDDLYLVHD 502 (638)
T ss_pred c---CCeEEEEeCC--------HHHHHHhCCEEEEEEC
Confidence 4 3466666553 2256777888888863
No 418
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.7e-06 Score=71.76 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|||||||++.++..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 69999999999999999999988753
No 419
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.51 E-value=6.5e-07 Score=84.93 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 7999999999999999999998887665
No 420
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.1e-06 Score=73.03 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 699999999999999999999887653
No 421
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.51 E-value=4e-07 Score=80.34 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCeEEEEec
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQS-NANVVFMCN 56 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~-g~~v~yi~~ 56 (233)
.+..++|+||||+|||++++.++....... +..++|++.
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~ 93 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC 93 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC
Confidence 456789999999999999999998776332 467888864
No 422
>PHA02542 41 41 helicase; Provisional
Probab=98.51 E-value=8e-07 Score=80.13 Aligned_cols=179 Identities=11% Similarity=0.084 Sum_probs=97.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccc-cc--ccCC------chhh---------
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYL-SQ--SIDP------SSHV--------- 77 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~-~~--~~~~------~~~~--------- 77 (233)
..+|..++|.|+||.|||+|+.++|.+.+ ..|.+|+|++-|..-..-..++ .. ..+. .+..
T Consensus 187 l~~G~LiiIaarPgmGKTtfalniA~~~a-~~g~~Vl~fSLEM~~~ql~~Rl~a~~~~i~~~~l~~l~~~~~~~~~~~~~ 265 (473)
T PHA02542 187 AERKTLNVLLAGVNVGKSLGLCSLAADYL-QQGYNVLYISMEMAEEVIAKRIDANLLDVSLDDIDDLSKAEYKAKMEKLR 265 (473)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEEeccCCHHHHHHHHHHHHcCCCHHHHhhcCHHHHHHHHHHHH
Confidence 36899999999999999999999999988 7799999999662111100111 00 0000 0000
Q ss_pred ---hcceEEEE--e--cCHHHHHHHHHHhccc-CCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHH
Q 041690 78 ---FKLIQMKY--V--EDDEEIKKYFAAFHQH-DKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAIT 149 (233)
Q Consensus 78 ---~~~i~~~~--~--~~~~~l~~~~~~~~~~-~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 149 (233)
..++.+.. . -....++..+..+... ...+++||||-++-+.... .+ .....+. ..+..+...++
T Consensus 266 ~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~---~~-~~~~nr~----~ei~~Isr~LK 337 (473)
T PHA02542 266 SKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSR---LR-VSSENSY----TYVKAIAEELR 337 (473)
T ss_pred HHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCc---cc-CCCCChH----HHHHHHHHHHH
Confidence 01222211 1 1133555555444322 2238999999997765311 00 0111121 23344555566
Q ss_pred Hhhh-cCCcEEEEeecCCC----CCchhHH-----HHHHhhccceEEEec------CCccEEEeeccCcc
Q 041690 150 HANK-KSPCKLLLSDTHLG----NSTRLLY-----IYKRWISSIFTVKGD------GPGSFLLRNKNYSR 203 (233)
Q Consensus 150 ~l~~-~~~~vlvi~~~~~~----~~~~~~~-----~~~~~~~~~~~i~~~------~~~~~~l~~~~~~~ 203 (233)
.+++ .+++|++++..|+. ..|.+.- .++...|.++.+..+ +..+.++.++++.+
T Consensus 338 ~lAkel~vpVi~lsQLnR~~e~r~dP~lsDLreSG~IEqdAD~vl~l~r~~~~~~~~~~eliv~KnR~G~ 407 (473)
T PHA02542 338 GLAVEHDVVVWTAAQTTRSGWDSSDVDMSDTAESAGLPATADFMLAVIETEELAQMGQQLVKQLKSRYGD 407 (473)
T ss_pred HHHHHhCCeEEEEEeeCccccccCCCcchhcccccchHhhcCEEEEEecCcccccCCeEEEEEecCCCCC
Confidence 5544 47777778877643 1132111 245566777777542 23457788888765
No 423
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.4e-06 Score=72.26 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|||||||++.++..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 69999999999999999999988753
No 424
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=8.7e-07 Score=73.87 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|+|||||++.++..
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 69999999999999999999988754
No 425
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.50 E-value=5.3e-07 Score=86.20 Aligned_cols=34 Identities=38% Similarity=0.417 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
++.+++++||||||||++++.++.... .+++.++
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~----~~~~~i~ 379 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALN----RKFVRFS 379 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhc----CCeEEEe
Confidence 566899999999999999998887553 4454443
No 426
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.50 E-value=2.2e-06 Score=71.78 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|+|||||++.++..
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 79999999999999999999988753
No 427
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.50 E-value=3.2e-06 Score=68.07 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=38.9
Q ss_pred CCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhc-CCcEEEEeecCCCCCchhHHHHHHhhcc
Q 041690 104 KIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKK-SPCKLLLSDTHLGNSTRLLYIYKRWISS 182 (233)
Q Consensus 104 ~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~vlvi~~~~~~~~~~~~~~~~~~~~~ 182 (233)
..|+++++||+.+-++.. .+. ..+.+.+..+++. +.+++++++... .. ...+.
T Consensus 138 ~~p~illlDEP~~~LD~~-------------~~~----~~l~~~l~~~~~~~~~~iiiitH~~~--------~~-~~~d~ 191 (204)
T cd03240 138 SNCGILALDEPTTNLDEE-------------NIE----ESLAEIIEERKSQKNFQLIVITHDEE--------LV-DAADH 191 (204)
T ss_pred cCCCEEEEcCCccccCHH-------------HHH----HHHHHHHHHHHhccCCEEEEEEecHH--------HH-hhCCE
Confidence 349999999999999831 111 0145556555555 667777766421 23 35788
Q ss_pred ceEEEecC
Q 041690 183 IFTVKGDG 190 (233)
Q Consensus 183 ~~~i~~~~ 190 (233)
++.+...+
T Consensus 192 i~~l~~~~ 199 (204)
T cd03240 192 IYRVEKDG 199 (204)
T ss_pred EEEEeeCC
Confidence 88888765
No 428
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.50 E-value=4.9e-06 Score=73.15 Aligned_cols=93 Identities=18% Similarity=0.161 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhh---cCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCAS---QSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIK 93 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~---~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 93 (233)
..+.+++++||+|+||||.+..+|..... ..|.+|.+++....-....+.+..+.+.. .+-+........+.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l-----gvpv~~~~~~~~l~ 246 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIM-----GIPVKAIESFKDLK 246 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcC-----CcceEeeCcHHHHH
Confidence 34678999999999999999999876653 24678888875521111111111111100 11222233345555
Q ss_pred HHHHHhcccCCCCcEEEEeCCCccc
Q 041690 94 KYFAAFHQHDKIPTAVVVDDFGDLF 118 (233)
Q Consensus 94 ~~~~~~~~~~~~p~iIvIDei~~~~ 118 (233)
..+... . ..++|+||++....
T Consensus 247 ~~L~~~---~-~~DlVLIDTaGr~~ 267 (388)
T PRK12723 247 EEITQS---K-DFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHHh---C-CCCEEEEcCCCCCc
Confidence 555433 2 27999999986554
No 429
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.4e-06 Score=72.83 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|+|||||++.++...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 799999999999999999999887544
No 430
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.50 E-value=9.7e-07 Score=81.52 Aligned_cols=28 Identities=21% Similarity=0.037 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 31 ~~Ge~~~iiG~NGsGKSTLlk~i~G~~~ 58 (556)
T PRK11819 31 FPGAKIGVLGLNGAGKSTLLRIMAGVDK 58 (556)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 431
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.4e-06 Score=73.89 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|||||||++.++..
T Consensus 63 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 63 LSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 79999999999999999999988753
No 432
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.1e-06 Score=73.28 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 799999999999999999999888654
No 433
>PRK04195 replication factor C large subunit; Provisional
Probab=98.50 E-value=1.3e-06 Score=79.20 Aligned_cols=34 Identities=35% Similarity=0.441 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
+...++|+|||||||||++..++... +..++.++
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el----~~~~ieln 71 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDY----GWEVIELN 71 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc----CCCEEEEc
Confidence 36789999999999999999887643 45566664
No 434
>PRK13409 putative ATPase RIL; Provisional
Probab=98.49 E-value=6.2e-07 Score=83.17 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=26.3
Q ss_pred cCCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 15 ETHVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 15 ~~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
...+|.++.|.||+|+|||||++.++....
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 568999999999999999999998876544
No 435
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.49 E-value=5.5e-07 Score=83.33 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 7999999999999999999998876554
No 436
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1.2e-06 Score=75.77 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 106 ~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 106 KRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 699999999999999999999887654
No 437
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.49 E-value=1.5e-06 Score=70.43 Aligned_cols=29 Identities=21% Similarity=0.039 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.++|..+.|.||+|||||||++.++....
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 46899999999999999999998876544
No 438
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.49 E-value=2e-06 Score=72.27 Aligned_cols=27 Identities=26% Similarity=0.560 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 699999999999999999999988654
No 439
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.49 E-value=3.7e-06 Score=73.25 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++.+++|.||+||||||++..++.... ..|.+|.+++....-....+.+....+.. .+.+........+...+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~-~~g~~V~lItaDtyR~gAveQLk~yae~l-----gvpv~~~~dp~dL~~al 277 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLL-KQNRTVGFITTDTFRSGAVEQFQGYADKL-----DVELIVATSPAELEEAV 277 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCCccCccHHHHHHHHhhcC-----CCCEEecCCHHHHHHHH
Confidence 5789999999999999999999998776 66889999986521111111222111110 11112223455666655
Q ss_pred HHhcccCCCCcEEEEeCCCccc
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLF 118 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~ 118 (233)
..+... ...++|+||......
T Consensus 278 ~~l~~~-~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 278 QYMTYV-NCVDHILIDTVGRNY 298 (407)
T ss_pred HHHHhc-CCCCEEEEECCCCCc
Confidence 544311 227999999986654
No 440
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.49 E-value=3.7e-06 Score=65.11 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFA 40 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a 40 (233)
.+|..+.|.||+|+|||||+.-+|
T Consensus 34 ~~Ge~vaiVG~SGSGKSTLl~vlA 57 (228)
T COG4181 34 KRGETVAIVGPSGSGKSTLLAVLA 57 (228)
T ss_pred cCCceEEEEcCCCCcHHhHHHHHh
Confidence 699999999999999999998665
No 441
>PRK09165 replicative DNA helicase; Provisional
Probab=98.49 E-value=1.7e-06 Score=78.66 Aligned_cols=41 Identities=32% Similarity=0.506 Sum_probs=36.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc--------------CCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ--------------SNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~--------------~g~~v~yi~~e 57 (233)
.+|..++|.|+||+|||+|+.+++.+.+.. .|.+|+|++-|
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE 269 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE 269 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc
Confidence 699999999999999999999999988743 26889999977
No 442
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=2.1e-06 Score=71.27 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|+|||||++.++...
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 699999999999999999999888654
No 443
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1.9e-06 Score=71.53 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|+|||||++.++...
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 699999999999999999999888643
No 444
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.48 E-value=1.8e-06 Score=76.92 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=35.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh-hcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA-SQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~-~~~g~~v~yi~~e 57 (233)
.++.+++|.||+|+||||++..+|...+ ...+.+|.+++..
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4578999999999999999999988776 4567899999865
No 445
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.48 E-value=1.6e-06 Score=70.38 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
+.++|+||+|+|||||+++++...
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~ 53 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIV 53 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHH
Confidence 789999999999999999998543
No 446
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.6e-06 Score=68.76 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=41.4
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++- -.|..+-+.+..++..+..+++||+..+ ++.+.-+...+
T Consensus 163 Pkl~ILDE~DSGLDI------------------dalk~V~~~i~~lr~~~~~~liITHy~r--------ll~~i~pD~vh 216 (251)
T COG0396 163 PKLAILDEPDSGLDI------------------DALKIVAEGINALREEGRGVLIITHYQR--------LLDYIKPDKVH 216 (251)
T ss_pred CCEEEecCCCcCccH------------------HHHHHHHHHHHHHhcCCCeEEEEecHHH--------HHhhcCCCEEE
Confidence 999999999999983 2333466777778888999999987642 55665555666
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+--
T Consensus 217 vl~ 219 (251)
T COG0396 217 VLY 219 (251)
T ss_pred EEE
Confidence 554
No 447
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=2e-06 Score=71.33 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~ 41 (233)
.+|..+.|.||+|+|||||++.++.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhh
Confidence 6999999999999999999998874
No 448
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.48 E-value=8.1e-07 Score=84.11 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 481 ~~G~~vaivG~sGsGKSTL~~ll~g~~~ 508 (694)
T TIGR01846 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYT 508 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876554
No 449
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.48 E-value=2e-07 Score=74.64 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..+.++|.||||||||+++..+...+. ..|.+|++++..
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~-~~g~~v~~~apT 55 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALE-AAGKRVIGLAPT 55 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHH-HTT--EEEEESS
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHH-hCCCeEEEECCc
Confidence 456899999999999999999887777 567888888644
No 450
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=1.3e-06 Score=72.97 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 31 YQSKVTAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 7999999999999999999998886554
No 451
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.47 E-value=1.2e-06 Score=77.61 Aligned_cols=126 Identities=12% Similarity=0.148 Sum_probs=73.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCC-ccccc-------ccccccccC--CchhhhcceEEEE
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRS-RLQSK-------RPYLSQSID--PSSHVFKLIQMKY 85 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~-~l~~~-------~~~~~~~~~--~~~~~~~~i~~~~ 85 (233)
..+|.+-.|.|.+|+|||||...+.-... ....-+|++... .+... -..+.|.+. +.-.+.+||.+..
T Consensus 27 v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~ 104 (501)
T COG3845 27 VKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGL 104 (501)
T ss_pred ecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcC
Confidence 37999999999999999999997765444 233345554431 11111 111222221 2233344444311
Q ss_pred e------------------------------------cCHH-HHHHHHHHhcccCCCCcEEEEeCCCccccccccccccC
Q 041690 86 V------------------------------------EDDE-EIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYT 128 (233)
Q Consensus 86 ~------------------------------------~~~~-~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~ 128 (233)
. +-.+ +-.+++..+. ..++++++||+++.+..
T Consensus 105 e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy---r~a~iLILDEPTaVLTP-------- 173 (501)
T COG3845 105 EPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY---RGARLLILDEPTAVLTP-------- 173 (501)
T ss_pred ccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh---cCCCEEEEcCCcccCCH--------
Confidence 1 0011 1112222221 12899999999999984
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeec
Q 041690 129 NPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDT 164 (233)
Q Consensus 129 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~ 164 (233)
. ....++..++.+++.|.++++|++-
T Consensus 174 ----~------E~~~lf~~l~~l~~~G~tIi~ITHK 199 (501)
T COG3845 174 ----Q------EADELFEILRRLAAEGKTIIFITHK 199 (501)
T ss_pred ----H------HHHHHHHHHHHHHHCCCEEEEEecc
Confidence 1 1223788888999999999999874
No 452
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.47 E-value=1.5e-06 Score=79.18 Aligned_cols=142 Identities=13% Similarity=0.157 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-------CCCeEEEEecCCcccccccccccccC-----------------
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-------SNANVVFMCNRSRLQSKRPYLSQSID----------------- 72 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-------~g~~v~yi~~e~~l~~~~~~~~~~~~----------------- 72 (233)
.+|..+.|.|++|+|||||++.++...... .+.++.|+.++..+......+...+.
T Consensus 27 ~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~ 106 (530)
T COG0488 27 NPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYA 106 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 699999999999999999999887655422 23467888776433221100000000
Q ss_pred ---------------------------CchhhhcceEE-------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccc
Q 041690 73 ---------------------------PSSHVFKLIQM-------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLF 118 (233)
Q Consensus 73 ---------------------------~~~~~~~~i~~-------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~ 118 (233)
....++..+.+ ..++.+...+-.++.+-.. .|+++++||++..+
T Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~--~pDlLLLDEPTNHL 184 (530)
T COG0488 107 LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLE--EPDLLLLDEPTNHL 184 (530)
T ss_pred hcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccc
Confidence 00011111111 2234455666666654422 39999999999999
Q ss_pred cccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceEEEec
Q 041690 119 DDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 189 (233)
+.. ...| +-+.+ +....++|+|++- .+.+.+.+.++++++..
T Consensus 185 D~~------------~i~W------Le~~L---~~~~gtviiVSHD--------R~FLd~V~t~I~~ld~g 226 (530)
T COG0488 185 DLE------------SIEW------LEDYL---KRYPGTVIVVSHD--------RYFLDNVATHILELDRG 226 (530)
T ss_pred CHH------------HHHH------HHHHH---HhCCCcEEEEeCC--------HHHHHHHhhheEEecCC
Confidence 941 1111 22333 3333378888763 34899999999999863
No 453
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.47 E-value=5.1e-07 Score=76.32 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-SNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-~g~~v~yi~~e 57 (233)
.++.+++|.||+|+||||++..++...... .+.+|.+|+..
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 467899999999999999999999888744 34899999865
No 454
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.47 E-value=1.4e-06 Score=81.63 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~ 370 (635)
T PRK11147 343 QRGDKIALIGPNGCGKTTLLKLMLGQLQ 370 (635)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 6999999999999999999998876543
No 455
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.47 E-value=2.6e-06 Score=71.45 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 699999999999999999999887654
No 456
>PLN03211 ABC transporter G-25; Provisional
Probab=98.47 E-value=9e-07 Score=83.12 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|+|||||++.++...
T Consensus 92 ~~Ge~~aI~GpnGaGKSTLL~iLaG~~ 118 (659)
T PLN03211 92 SPGEILAVLGPSGSGKSTLLNALAGRI 118 (659)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999999999887654
No 457
>PRK06620 hypothetical protein; Validated
Probab=98.47 E-value=6.4e-07 Score=72.69 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 041690 20 PITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~ 41 (233)
..+.|+||||||||+|+..++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~ 66 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQN 66 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999995443
No 458
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.8e-06 Score=72.07 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 699999999999999999999988654
No 459
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=2.4e-06 Score=71.30 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 34 PNNSIFGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999998886544
No 460
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.46 E-value=5.5e-07 Score=77.68 Aligned_cols=21 Identities=48% Similarity=0.589 Sum_probs=17.6
Q ss_pred EEcCCCCcHHHHHHHHHHHhh
Q 041690 24 LSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 24 l~GppGsGKTtLa~~~a~~~~ 44 (233)
|.||+|||||||++.++....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~ 21 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ 21 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC
Confidence 579999999999998876543
No 461
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.46 E-value=9.8e-07 Score=81.71 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 7999999999999999999999887665
No 462
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.9e-06 Score=71.48 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|+|||||++.++..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 69999999999999999999988753
No 463
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.4e-06 Score=80.00 Aligned_cols=141 Identities=15% Similarity=0.167 Sum_probs=76.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-------CeEEEEecCCc--ccc---ccccccccc--C-Cc---hhhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSN-------ANVVFMCNRSR--LQS---KRPYLSQSI--D-PS---SHVF 78 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-------~~v~yi~~e~~--l~~---~~~~~~~~~--~-~~---~~~~ 78 (233)
.+|..+.|.||+|||||||++.++.......| .++.|+..+.. +.. ..+.+.... . .. ...+
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l 422 (530)
T PRK15064 343 EAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTL 422 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHH
Confidence 69999999999999999999988754431212 23556654421 111 011110000 0 00 1111
Q ss_pred cceE---------EEEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHH
Q 041690 79 KLIQ---------MKYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAIT 149 (233)
Q Consensus 79 ~~i~---------~~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 149 (233)
+.+. ...++.++..+-.++.+-. ..|+++++||+++-++.. .... +++.+.
T Consensus 423 ~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~--~~p~lllLDEPt~~LD~~-------------~~~~-----l~~~l~ 482 (530)
T PRK15064 423 GRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMM--QKPNVLVMDEPTNHMDME-------------SIES-----LNMALE 482 (530)
T ss_pred HHcCCChhHhcCcccccCHHHHHHHHHHHHHh--cCCCEEEEcCCCCCCCHH-------------HHHH-----HHHHHH
Confidence 1111 1223334455545544432 239999999999999841 1111 444454
Q ss_pred HhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 150 HANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 150 ~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
.+ +.++|++++.. ..+..+.+.++.+..
T Consensus 483 ~~---~~tvi~vsHd~--------~~~~~~~d~i~~l~~ 510 (530)
T PRK15064 483 KY---EGTLIFVSHDR--------EFVSSLATRIIEITP 510 (530)
T ss_pred HC---CCEEEEEeCCH--------HHHHHhCCEEEEEEC
Confidence 33 34666665432 156777888888874
No 464
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.45 E-value=2.4e-06 Score=68.47 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=26.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEE
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFM 54 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi 54 (233)
..++|.||+||||||++..++.......+..++.+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~ 36 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI 36 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE
Confidence 46899999999999999988776663334455544
No 465
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.9e-06 Score=78.39 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=40.6
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++.. .+.. +++.+..+++.+.+++++++... ...++.+.++.
T Consensus 410 p~illLDEPt~gLD~~-------------~~~~-----~~~~l~~l~~~~~tvi~vsHd~~--------~~~~~~d~v~~ 463 (491)
T PRK10982 410 PEILMLDEPTRGIDVG-------------AKFE-----IYQLIAELAKKDKGIIIISSEMP--------ELLGITDRILV 463 (491)
T ss_pred CCEEEEcCCCcccChh-------------HHHH-----HHHHHHHHHHCCCEEEEECCChH--------HHHhhCCEEEE
Confidence 9999999999999842 1112 56666666667778777765321 56678899988
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+..
T Consensus 464 l~~ 466 (491)
T PRK10982 464 MSN 466 (491)
T ss_pred EEC
Confidence 874
No 466
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.45 E-value=7.2e-07 Score=84.62 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 7999999999999999999998876554
No 467
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.45 E-value=5.6e-07 Score=82.83 Aligned_cols=35 Identities=40% Similarity=0.467 Sum_probs=30.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
++..+.||+||||-||||||+-+|. +.|.+|+-|.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAk----qaGYsVvEIN 358 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAK----QAGYSVVEIN 358 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHH----hcCceEEEec
Confidence 5777899999999999999997665 6688898885
No 468
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.45 E-value=8.3e-07 Score=78.70 Aligned_cols=26 Identities=35% Similarity=0.300 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
+...++|+||||||||++|+.++...
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999887643
No 469
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.45 E-value=3.3e-06 Score=65.96 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
++++.||||+||||++..++..++ +.|.++++++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~-~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK-KKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCcEEEEEcC
Confidence 578999999999999999998887 668899999855
No 470
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=2.3e-06 Score=72.16 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|+|||||++.++....
T Consensus 45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 45 PARAVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 6999999999999999999998876543
No 471
>PLN03025 replication factor C subunit; Provisional
Probab=98.44 E-value=1.9e-06 Score=74.06 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
....++++|||||||||+++.++..+.
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 345689999999999999999998765
No 472
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.44 E-value=1.5e-06 Score=79.69 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 310 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 336 (529)
T PRK15134 310 RPGETLGLVGESGSGKSTTGLALLRLI 336 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 799999999999999999999887644
No 473
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.44 E-value=1.6e-06 Score=80.02 Aligned_cols=141 Identities=14% Similarity=0.188 Sum_probs=75.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-------CeEEEEecCC-ccccc---ccccccc-----cCC----chh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSN-------ANVVFMCNRS-RLQSK---RPYLSQS-----IDP----SSH 76 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-------~~v~yi~~e~-~l~~~---~~~~~~~-----~~~----~~~ 76 (233)
.+|..+.|.||+|||||||++.++.......| ..+.|+..+. .+... .+.+... ... ...
T Consensus 346 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 425 (552)
T TIGR03719 346 PPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA 425 (552)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHH
Confidence 69999999999999999999988754331212 1356665542 11110 0000000 000 001
Q ss_pred hhcceEE---------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHH
Q 041690 77 VFKLIQM---------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNA 147 (233)
Q Consensus 77 ~~~~i~~---------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 147 (233)
.++.+.+ ..++.++..+-.++.+-. ..|+++++||+++-++.. .... +++.
T Consensus 426 ~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~--~~p~lllLDEPt~~LD~~-------------~~~~-----l~~~ 485 (552)
T TIGR03719 426 YVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLK--SGGNVLLLDEPTNDLDVE-------------TLRA-----LEEA 485 (552)
T ss_pred HHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHH-------------HHHH-----HHHH
Confidence 1121111 122333444444444332 239999999999999841 1111 4555
Q ss_pred HHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 148 ITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 148 ~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+..+ +.+++++++.. ..+.++.+.++.+..
T Consensus 486 l~~~---~~~viivsHd~--------~~~~~~~d~i~~l~~ 515 (552)
T TIGR03719 486 LLEF---AGCAVVISHDR--------WFLDRIATHILAFEG 515 (552)
T ss_pred HHHC---CCeEEEEeCCH--------HHHHHhCCEEEEEEC
Confidence 5444 23566554421 156778898888874
No 474
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.44 E-value=1.7e-06 Score=69.25 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=30.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.++++.||+|+||||.+..+|.....+ +.+|..++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D 38 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISAD 38 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEES
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCC
Confidence 578999999999999999999888855 9999999865
No 475
>PRK08506 replicative DNA helicase; Provisional
Probab=98.43 E-value=2.5e-06 Score=77.17 Aligned_cols=40 Identities=20% Similarity=0.418 Sum_probs=37.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+|..++|.|+||.|||+|+.+++.+++ ..|.+|+|++-|
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~-~~g~~V~~fSlE 229 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKAL-NQDKGVAFFSLE 229 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHH-hcCCcEEEEeCc
Confidence 6999999999999999999999999887 678899999977
No 476
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.43 E-value=1.3e-06 Score=76.23 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|...+|+||||+|||||+++++....
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHH
Confidence 5999999999999999999999888777
No 477
>PRK06321 replicative DNA helicase; Provisional
Probab=98.43 E-value=2.2e-06 Score=77.27 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=37.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+|..++|.|.||.|||+|+.+++..++...|.+|+|++-|
T Consensus 224 ~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLE 264 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLE 264 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 69999999999999999999999998886668899999877
No 478
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.43 E-value=8.2e-07 Score=84.17 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecC-HHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVED-DEEIKKYF 96 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~ 96 (233)
....++|+||||||||+++..++.... ..+.+..+....- +......+-.+ ..|... ...++.++
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~-~~~vP~~l~~~~~-~~l~~~~llaG------------~~~~Ge~e~rl~~l~ 271 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIV-QGDVPEVMADCTI-YSLDIGSLLAG------------TKYRGDFEKRFKALL 271 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHH-hcCCCchhcCCeE-EeccHHHHhcc------------cchhhhHHHHHHHHH
Confidence 456788999999999999999987665 2221111111000 00000000000 011111 44566676
Q ss_pred HHhcccCCCCcEEEEeCCCccccc
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDD 120 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~ 120 (233)
..+. ...+.+|||||++.++..
T Consensus 272 ~~l~--~~~~~ILfIDEIh~L~g~ 293 (758)
T PRK11034 272 KQLE--QDTNSILFIDEIHTIIGA 293 (758)
T ss_pred HHHH--hcCCCEEEeccHHHHhcc
Confidence 6554 233789999999999874
No 479
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.43 E-value=2.5e-06 Score=66.71 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=29.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEE
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVF 53 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~y 53 (233)
.++|..+.+.|.+|||||||++.++.-.. ..++.+++
T Consensus 36 L~~~QTlaiIG~NGSGKSTLakMlaGmi~-PTsG~il~ 72 (267)
T COG4167 36 LREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGEILI 72 (267)
T ss_pred ecCCcEEEEEccCCCcHhHHHHHHhcccC-CCCceEEE
Confidence 37899999999999999999999987666 44444444
No 480
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=3e-06 Score=70.29 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|+|||||++.++...
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 799999999999999999999888654
No 481
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.42 E-value=6e-06 Score=64.02 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCAS 45 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~ 45 (233)
++..++|.||+|+|||+++++++.....
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~ 47 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3479999999999999999998776653
No 482
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.5e-06 Score=78.42 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.|++|||||||+..++....
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcCC
Confidence 6999999999999999999998876555
No 483
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.42 E-value=2.4e-06 Score=78.84 Aligned_cols=28 Identities=21% Similarity=0.037 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 29 ~~Ge~~~liG~NGsGKSTLl~~i~G~~~ 56 (552)
T TIGR03719 29 FPGAKIGVLGLNGAGKSTLLRIMAGVDK 56 (552)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998876543
No 484
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.42 E-value=1.1e-06 Score=84.53 Aligned_cols=81 Identities=21% Similarity=0.310 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc------CCCeEEEEecCCcccccccccccccCCchhhhcceEEEEec-CHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ------SNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVE-DDE 90 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~------~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 90 (233)
....++|+||||||||+++..+|...... .+..++.++... .+. +. .|.. ..+
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~-------l~a-g~------------~~~ge~e~ 258 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL-------LLA-GT------------KYRGEFEE 258 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH-------Hhc-cC------------CCccHHHH
Confidence 55678999999999999999999877621 134444443110 000 00 0111 145
Q ss_pred HHHHHHHHhcccCCCCcEEEEeCCCccccc
Q 041690 91 EIKKYFAAFHQHDKIPTAVVVDDFGDLFDD 120 (233)
Q Consensus 91 ~l~~~~~~~~~~~~~p~iIvIDei~~~~~~ 120 (233)
.++.++..+. ...+.++||||++.+...
T Consensus 259 rl~~i~~~~~--~~~~~ILfiDEih~l~~~ 286 (821)
T CHL00095 259 RLKRIFDEIQ--ENNNIILVIDEVHTLIGA 286 (821)
T ss_pred HHHHHHHHHH--hcCCeEEEEecHHHHhcC
Confidence 7777887664 334789999999999874
No 485
>PRK09087 hypothetical protein; Validated
Probab=98.42 E-value=2.1e-06 Score=70.26 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+..+.|+||+|||||+|++.++.. ..+.|++
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~------~~~~~i~ 74 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREK------SDALLIH 74 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------cCCEEec
Confidence 4556999999999999999966542 2355775
No 486
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.42 E-value=8.7e-06 Score=69.92 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=34.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.++.+++|.||||+||||++..+|.... ..|.+|..++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecC
Confidence 4688999999999999999999998887 668889988754
No 487
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=4.2e-06 Score=75.05 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=29.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
++|..+.|.|+|||||||+++.+..-.. ..| -++|++
T Consensus 376 ~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG--~I~IdG 412 (591)
T KOG0057|consen 376 PKGEKVAIVGSNGSGKSTILRLLLRFFD-YSG--SILIDG 412 (591)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhc-cCC--cEEECC
Confidence 6999999999999999999998876555 323 344554
No 488
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.42 E-value=1.7e-06 Score=81.23 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 59 (648)
T PRK10535 32 YAGEMVAIVGASGSGKSTLMNILGCLDK 59 (648)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998886654
No 489
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.42 E-value=2.4e-06 Score=67.75 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++|+||+|+||||++++++...
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~ 23 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV 23 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 36899999999999999998544
No 490
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.5e-06 Score=77.81 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhh
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCAS 45 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~ 45 (233)
+..++++|||||||||+|+.+|..+..
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 345899999999999999999987663
No 491
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.41 E-value=1.2e-05 Score=63.48 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
....|+||+|+|||+++.++.....
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3899999999999999998876544
No 492
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.41 E-value=4.5e-06 Score=64.08 Aligned_cols=72 Identities=8% Similarity=0.162 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCC
Q 041690 89 DEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGN 168 (233)
Q Consensus 89 ~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~ 168 (233)
+...+-.++.+.+.+ |.++++||+++.++. +...+ +.+.++.+...|.+-+++++.-.
T Consensus 145 gqqqrvaiaralmmk--pqvllfdeptaaldp-------------eitaq-----vv~iikel~~tgitqvivthev~-- 202 (242)
T COG4161 145 GQQQRVAIARALMME--PQVLLFDEPTAALDP-------------EITAQ-----IVSIIKELAETGITQVIVTHEVE-- 202 (242)
T ss_pred chhhhHHHHHHHhcC--CcEEeecCcccccCH-------------HHHHH-----HHHHHHHHHhcCceEEEEEeehh--
Confidence 334444444433323 999999999999983 22223 66778888888999888866432
Q ss_pred CchhHHHHHHhhccceEEEe
Q 041690 169 STRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~ 188 (233)
+.+..-.++++++.
T Consensus 203 ------va~k~as~vvyme~ 216 (242)
T COG4161 203 ------VARKTASRVVYMEN 216 (242)
T ss_pred ------HHHhhhhheEeeec
Confidence 22334456777764
No 493
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.41 E-value=1.8e-06 Score=81.73 Aligned_cols=124 Identities=12% Similarity=0.187 Sum_probs=65.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc---C---CCeEEEEecCCcccccccc----cccccCCchhhhcceEEEEec
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ---S---NANVVFMCNRSRLQSKRPY----LSQSIDPSSHVFKLIQMKYVE 87 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~---~---g~~v~yi~~e~~l~~~~~~----~~~~~~~~~~~~~~i~~~~~~ 87 (233)
++..+.|+|+||||||+.++.++..+... . ...++||.... +...... +.+..+.. -..-..
T Consensus 780 pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~-Lstp~sIYqvI~qqL~g~~-------P~~Gls 851 (1164)
T PTZ00112 780 SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN-VVHPNAAYQVLYKQLFNKK-------PPNALN 851 (1164)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc-cCCHHHHHHHHHHHHcCCC-------CCcccc
Confidence 44556799999999999999988766421 1 24578886431 0011100 11110100 000111
Q ss_pred CHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCC
Q 041690 88 DDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLG 167 (233)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~ 167 (233)
..+.+..++..+......+.+||||||+.+... . +.. ++.++++....+..++||+.++.-
T Consensus 852 S~evLerLF~~L~k~~r~v~IIILDEID~L~kK------------~----QDV---LYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 852 SFKILDRLFNQNKKDNRNVSILIIDEIDYLITK------------T----QKV---LFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHhhhhcccccceEEEeehHhhhCcc------------H----HHH---HHHHHHHhhccCCeEEEEEecCch
Confidence 234555666544222233679999999988862 0 111 344444333345567777776643
Q ss_pred C
Q 041690 168 N 168 (233)
Q Consensus 168 ~ 168 (233)
+
T Consensus 913 D 913 (1164)
T PTZ00112 913 D 913 (1164)
T ss_pred h
Confidence 3
No 494
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.41 E-value=1.5e-06 Score=71.04 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
|...+||+|++|||||++.+++....+ ..|-+++-|+
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~-~~GLRlIev~ 87 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYA-DQGLRLIEVS 87 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHh-hcCceEEEEC
Confidence 888999999999999999999998888 6678888875
No 495
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.41 E-value=2.2e-06 Score=73.95 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCeEEEEec
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQS-NANVVFMCN 56 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~-g~~v~yi~~ 56 (233)
..++|+||||||||++++.++....... +.+++|++.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 3799999999999999999988776332 345677753
No 496
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=2.9e-06 Score=77.13 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
+..+|++|||||||||+++.++..+.
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34469999999999999999998775
No 497
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.40 E-value=7.8e-07 Score=77.68 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-----CeEEEEec
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSN-----ANVVFMCN 56 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-----~~v~yi~~ 56 (233)
.+..++|+||||||||++++.++..+..... ..++|++.
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 4567999999999999999999876642211 35777764
No 498
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.40 E-value=1.4e-06 Score=81.19 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|+.+.|.||+|+|||||+..++....
T Consensus 54 ~~Gel~AimG~SGsGKtTLL~~Lagr~~ 81 (613)
T KOG0061|consen 54 KPGELLAIMGPSGSGKTTLLNALAGRLN 81 (613)
T ss_pred ecCeEEEEECCCCCCHHHHHHHHhcccc
Confidence 6999999999999999999998887665
No 499
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.40 E-value=9.5e-07 Score=74.07 Aligned_cols=25 Identities=44% Similarity=0.614 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..++|.||||||||||++.++....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999998887665
No 500
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.6e-06 Score=76.19 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.|++||||||++..++..+.
T Consensus 362 ~~GEkvAIlG~SGsGKSTllqLl~~~~~ 389 (573)
T COG4987 362 AQGEKVAILGRSGSGKSTLLQLLAGAWD 389 (573)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHhccC
Confidence 7999999999999999999998887666
Done!