Query 041690
Match_columns 233
No_of_seqs 239 out of 2296
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 16:29:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.8 2.1E-18 7.3E-23 149.9 12.7 140 17-189 180-319 (405)
2 4b4t_I 26S protease regulatory 99.7 9.5E-18 3.3E-22 146.4 9.1 140 17-189 214-353 (437)
3 4b4t_M 26S protease regulatory 99.7 1E-17 3.5E-22 147.4 8.8 140 17-189 213-352 (434)
4 4b4t_L 26S protease subunit RP 99.7 1.5E-17 5.2E-22 146.4 9.7 140 17-189 213-352 (437)
5 4b4t_H 26S protease regulatory 99.7 3.8E-17 1.3E-21 143.8 12.2 140 17-189 241-380 (467)
6 4b4t_K 26S protease regulatory 99.7 6.2E-17 2.1E-21 142.2 9.9 138 17-187 204-341 (428)
7 3cf2_A TER ATPase, transitiona 99.6 6.8E-16 2.3E-20 144.7 9.9 137 17-189 236-372 (806)
8 3cf2_A TER ATPase, transitiona 99.6 7.5E-16 2.6E-20 144.4 9.0 140 17-189 509-648 (806)
9 3io5_A Recombination and repai 99.6 9.7E-15 3.3E-19 122.8 14.1 164 16-188 26-200 (333)
10 2zr9_A Protein RECA, recombina 99.6 5.5E-14 1.9E-18 120.9 16.5 161 17-188 59-229 (349)
11 3hr8_A Protein RECA; alpha and 99.6 1.2E-13 4.2E-18 118.7 17.8 161 17-188 59-229 (356)
12 2z43_A DNA repair and recombin 99.6 1.2E-13 4E-18 117.7 15.9 165 17-189 105-290 (324)
13 2cvh_A DNA repair and recombin 99.5 1.5E-13 5.3E-18 109.7 15.4 171 16-202 17-201 (220)
14 3lda_A DNA repair protein RAD5 99.5 2.1E-13 7.1E-18 119.2 16.8 165 17-189 176-363 (400)
15 1xwi_A SKD1 protein; VPS4B, AA 99.5 1.1E-13 3.9E-18 117.7 13.9 137 17-189 43-179 (322)
16 1u94_A RECA protein, recombina 99.5 1.9E-13 6.4E-18 117.8 15.0 185 17-217 61-266 (356)
17 2i1q_A DNA repair and recombin 99.5 3.5E-13 1.2E-17 114.5 16.0 165 17-189 96-291 (322)
18 1xp8_A RECA protein, recombina 99.5 1.1E-12 3.6E-17 113.5 19.0 162 17-189 72-243 (366)
19 1v5w_A DMC1, meiotic recombina 99.5 3E-13 1E-17 116.0 14.1 189 16-218 119-334 (343)
20 1pzn_A RAD51, DNA repair and r 99.5 4.2E-13 1.4E-17 115.5 14.9 178 17-201 129-329 (349)
21 1n0w_A DNA repair protein RAD5 99.5 8.8E-13 3E-17 106.9 15.7 166 16-189 21-209 (243)
22 3eie_A Vacuolar protein sortin 99.5 1.9E-13 6.6E-18 116.2 10.0 135 17-188 49-183 (322)
23 2dr3_A UPF0273 protein PH0284; 99.5 1.2E-12 4.1E-17 106.2 14.3 156 16-189 20-197 (247)
24 3h4m_A Proteasome-activating n 99.4 7.2E-13 2.5E-17 110.2 11.7 140 17-189 49-188 (285)
25 4a74_A DNA repair and recombin 99.4 3.1E-12 1.1E-16 102.8 14.9 177 16-202 22-215 (231)
26 3t15_A Ribulose bisphosphate c 99.4 6.8E-13 2.3E-17 111.4 11.4 143 17-187 34-185 (293)
27 2qp9_X Vacuolar protein sortin 99.4 5.3E-13 1.8E-17 115.1 10.4 136 17-189 82-217 (355)
28 3cf0_A Transitional endoplasmi 99.4 3.6E-13 1.2E-17 113.5 6.4 140 17-189 47-186 (301)
29 2zts_A Putative uncharacterize 99.4 3.5E-12 1.2E-16 103.7 11.9 171 17-202 28-226 (251)
30 3hu3_A Transitional endoplasmi 99.4 1.2E-12 4.1E-17 117.3 9.0 136 17-188 236-371 (489)
31 2zan_A Vacuolar protein sortin 99.4 1.5E-12 5E-17 115.5 8.5 137 17-189 165-301 (444)
32 2ce7_A Cell division protein F 99.3 2.1E-12 7.3E-17 115.0 9.3 139 18-189 48-186 (476)
33 3cmu_A Protein RECA, recombina 99.3 2.5E-11 8.5E-16 122.4 17.4 161 17-188 32-202 (2050)
34 3cmw_A Protein RECA, recombina 99.3 6E-12 2E-16 125.5 12.8 161 17-188 381-551 (1706)
35 3cmu_A Protein RECA, recombina 99.3 1.2E-11 4.1E-16 124.6 14.7 162 16-188 380-551 (2050)
36 3vfd_A Spastin; ATPase, microt 99.3 1E-11 3.5E-16 108.1 12.3 135 18-188 147-281 (389)
37 3b9p_A CG5977-PA, isoform A; A 99.3 1.3E-11 4.6E-16 103.2 11.9 137 17-188 52-188 (297)
38 2x8a_A Nuclear valosin-contain 99.3 4.5E-12 1.5E-16 105.5 8.8 136 18-189 43-178 (274)
39 3d8b_A Fidgetin-like protein 1 99.3 7.9E-12 2.7E-16 107.7 10.6 136 17-188 115-250 (357)
40 2ehv_A Hypothetical protein PH 99.3 6.2E-12 2.1E-16 102.2 8.4 159 16-189 27-208 (251)
41 2w0m_A SSO2452; RECA, SSPF, un 99.3 3.2E-11 1.1E-15 96.7 12.3 168 16-202 20-210 (235)
42 1cr0_A DNA primase/helicase; R 99.3 8.3E-11 2.8E-15 98.5 15.3 173 16-200 32-252 (296)
43 1lv7_A FTSH; alpha/beta domain 99.3 2.1E-11 7.1E-16 100.0 10.7 138 18-188 44-181 (257)
44 2qz4_A Paraplegin; AAA+, SPG7, 99.3 8.3E-12 2.8E-16 102.3 8.1 77 17-120 37-113 (262)
45 3bh0_A DNAB-like replicative h 99.3 1.4E-10 4.8E-15 98.3 15.9 174 17-203 66-290 (315)
46 2r6a_A DNAB helicase, replicat 99.2 3.2E-10 1.1E-14 100.7 17.4 177 16-203 200-423 (454)
47 1nlf_A Regulatory protein REPA 99.2 9.2E-11 3.1E-15 97.5 12.2 132 17-166 28-182 (279)
48 1q57_A DNA primase/helicase; d 99.2 1.8E-10 6.2E-15 103.5 15.0 173 16-200 239-459 (503)
49 3ec2_A DNA replication protein 99.2 1.4E-10 4.7E-15 90.0 11.6 40 17-56 36-75 (180)
50 2q6t_A DNAB replication FORK h 99.2 6.8E-10 2.3E-14 98.3 16.2 179 16-203 197-422 (444)
51 3cmw_A Protein RECA, recombina 99.2 3.1E-10 1.1E-14 113.3 14.3 162 17-188 1429-1599(1706)
52 2dhr_A FTSH; AAA+ protein, hex 99.2 8.2E-11 2.8E-15 105.4 9.1 138 19-189 64-201 (499)
53 2vhj_A Ntpase P4, P4; non- hyd 99.2 3.3E-10 1.1E-14 95.6 12.1 36 17-56 121-156 (331)
54 1tf7_A KAIC; homohexamer, hexa 99.1 3.7E-10 1.3E-14 102.0 13.3 155 16-188 278-442 (525)
55 2kjq_A DNAA-related protein; s 99.1 7.9E-10 2.7E-14 83.6 12.7 39 18-57 35-73 (149)
56 3syl_A Protein CBBX; photosynt 99.1 3.8E-10 1.3E-14 94.7 11.9 78 17-120 65-145 (309)
57 3bgw_A DNAB-like replicative h 99.1 1.4E-09 4.8E-14 96.3 15.8 175 16-203 194-419 (444)
58 1ypw_A Transitional endoplasmi 99.1 1.2E-10 4.1E-15 110.2 8.5 116 17-168 236-351 (806)
59 1ixz_A ATP-dependent metallopr 99.1 2.8E-10 9.5E-15 93.1 8.6 138 19-189 49-186 (254)
60 3bos_A Putative DNA replicatio 99.1 5.3E-10 1.8E-14 89.8 9.6 38 18-56 51-88 (242)
61 1tf7_A KAIC; homohexamer, hexa 99.1 1.9E-09 6.5E-14 97.4 13.8 157 16-188 36-209 (525)
62 2c9o_A RUVB-like 1; hexameric 99.1 8.5E-11 2.9E-15 104.5 4.4 79 18-120 62-141 (456)
63 2b8t_A Thymidine kinase; deoxy 99.0 2E-09 7E-14 86.6 11.6 40 17-57 10-49 (223)
64 1ypw_A Transitional endoplasmi 99.0 8.1E-12 2.8E-16 118.1 -3.3 137 17-189 509-648 (806)
65 1iy2_A ATP-dependent metallopr 99.0 9.8E-10 3.4E-14 91.1 9.5 137 20-189 74-210 (278)
66 1l8q_A Chromosomal replication 99.0 2.4E-09 8.1E-14 90.7 11.8 38 18-56 36-73 (324)
67 3gfo_A Cobalt import ATP-bindi 99.0 7.8E-10 2.7E-14 91.9 8.1 27 17-43 32-58 (275)
68 2r62_A Cell division protease 99.0 1.9E-12 6.5E-17 106.8 -7.9 76 18-120 43-118 (268)
69 1d2n_A N-ethylmaleimide-sensit 99.0 6.1E-10 2.1E-14 92.0 7.1 78 17-120 62-139 (272)
70 3tui_C Methionine import ATP-b 99.0 8.3E-10 2.8E-14 95.0 7.1 57 106-188 182-239 (366)
71 3rlf_A Maltose/maltodextrin im 99.0 1.5E-09 5E-14 94.0 8.4 29 16-44 26-54 (381)
72 4a1f_A DNAB helicase, replicat 99.0 2.2E-09 7.5E-14 91.6 9.3 41 17-58 44-84 (338)
73 2nq2_C Hypothetical ABC transp 98.9 1.1E-09 3.7E-14 90.0 6.8 144 17-188 29-204 (253)
74 3te6_A Regulatory protein SIR3 98.9 5.2E-09 1.8E-13 88.6 11.2 93 17-118 43-145 (318)
75 1vpl_A ABC transporter, ATP-bi 98.9 9.1E-10 3.1E-14 90.6 6.0 28 16-43 38-65 (256)
76 4g1u_C Hemin import ATP-bindin 98.9 8.2E-10 2.8E-14 91.4 5.6 76 87-188 143-223 (266)
77 3fvq_A Fe(3+) IONS import ATP- 98.9 3.7E-09 1.3E-13 90.8 9.6 29 16-44 27-55 (359)
78 2olj_A Amino acid ABC transpor 98.9 1.6E-09 5.5E-14 89.4 6.7 57 106-188 178-234 (263)
79 2yyz_A Sugar ABC transporter, 98.9 3.6E-09 1.2E-13 91.0 9.1 28 16-43 26-53 (359)
80 1jbk_A CLPB protein; beta barr 98.9 4.7E-09 1.6E-13 80.9 8.9 83 17-119 41-129 (195)
81 1z47_A CYSA, putative ABC-tran 98.9 2.7E-09 9.3E-14 91.6 8.3 27 17-43 39-65 (355)
82 2p65_A Hypothetical protein PF 98.9 3.3E-09 1.1E-13 81.7 7.9 83 17-119 41-129 (187)
83 2z4s_A Chromosomal replication 98.9 9E-09 3.1E-13 91.0 11.5 38 19-56 130-168 (440)
84 2onk_A Molybdate/tungstate ABC 98.9 3.5E-09 1.2E-13 86.3 7.8 57 106-188 145-202 (240)
85 2it1_A 362AA long hypothetical 98.9 4E-09 1.4E-13 90.8 8.5 28 16-43 26-53 (362)
86 1oxx_K GLCV, glucose, ABC tran 98.9 3.8E-09 1.3E-13 90.8 8.3 28 16-43 28-55 (353)
87 3tif_A Uncharacterized ABC tra 98.9 2.4E-09 8.3E-14 86.9 6.6 28 16-43 28-55 (235)
88 1g29_1 MALK, maltose transport 98.9 5.5E-09 1.9E-13 90.3 9.2 27 17-43 27-53 (372)
89 1ji0_A ABC transporter; ATP bi 98.9 3.9E-09 1.3E-13 86.0 7.7 57 106-188 158-214 (240)
90 2pcj_A ABC transporter, lipopr 98.9 5.1E-09 1.7E-13 84.4 8.3 27 17-43 28-54 (224)
91 1v43_A Sugar-binding transport 98.9 4.6E-09 1.6E-13 90.8 7.8 28 16-43 34-61 (372)
92 1b0u_A Histidine permease; ABC 98.8 3.9E-09 1.3E-13 87.1 6.5 57 106-188 172-228 (262)
93 1g6h_A High-affinity branched- 98.8 3.9E-09 1.3E-13 86.8 6.5 27 17-43 31-57 (257)
94 3n70_A Transport activator; si 98.8 8.9E-09 3E-13 77.1 7.6 37 17-55 22-58 (145)
95 3d31_A Sulfate/molybdate ABC t 98.8 5.2E-09 1.8E-13 89.7 6.9 28 16-43 23-50 (348)
96 2yz2_A Putative ABC transporte 98.8 4.9E-09 1.7E-13 86.7 6.5 28 16-43 30-57 (266)
97 2qi9_C Vitamin B12 import ATP- 98.8 8.1E-09 2.8E-13 84.6 7.6 28 17-44 24-51 (249)
98 2w58_A DNAI, primosome compone 98.8 3.3E-08 1.1E-12 77.8 10.5 35 20-55 55-89 (202)
99 3bs4_A Uncharacterized protein 98.8 1.5E-07 5.1E-12 77.3 14.2 42 16-58 18-59 (260)
100 2orw_A Thymidine kinase; TMTK, 98.8 2.4E-08 8.2E-13 78.0 8.9 37 18-55 2-38 (184)
101 2qgz_A Helicase loader, putati 98.8 9.7E-09 3.3E-13 86.6 6.6 37 19-55 152-188 (308)
102 3ozx_A RNAse L inhibitor; ATP 98.7 1.4E-08 5E-13 91.8 7.6 144 17-188 292-461 (538)
103 1mv5_A LMRA, multidrug resista 98.7 1.5E-08 5E-13 82.7 6.7 29 16-44 25-53 (243)
104 1yqt_A RNAse L inhibitor; ATP- 98.7 2.7E-08 9.4E-13 90.0 9.0 144 17-188 310-477 (538)
105 1yqt_A RNAse L inhibitor; ATP- 98.7 5.1E-08 1.7E-12 88.3 10.6 72 89-188 162-233 (538)
106 2ihy_A ABC transporter, ATP-bi 98.7 6.5E-09 2.2E-13 86.5 4.4 27 17-43 45-71 (279)
107 1sgw_A Putative ABC transporte 98.7 1.4E-08 4.8E-13 81.3 6.1 27 17-43 33-59 (214)
108 2v1u_A Cell division control p 98.7 3.1E-08 1.1E-12 85.0 8.5 40 17-56 42-86 (387)
109 4gp7_A Metallophosphoesterase; 98.7 3.4E-09 1.2E-13 81.7 2.2 60 103-164 99-158 (171)
110 3co5_A Putative two-component 98.7 8.6E-08 2.9E-12 71.6 9.8 23 18-40 26-48 (143)
111 2ff7_A Alpha-hemolysin translo 98.7 9.2E-09 3.1E-13 84.1 4.8 27 17-43 33-59 (247)
112 1ofh_A ATP-dependent HSL prote 98.7 1.8E-07 6.2E-12 77.9 12.8 34 18-55 49-82 (310)
113 3bk7_A ABC transporter ATP-bin 98.7 3.4E-08 1.1E-12 90.6 8.6 144 17-188 380-547 (607)
114 3nh6_A ATP-binding cassette SU 98.7 1.2E-08 4.2E-13 85.9 4.7 27 17-43 78-104 (306)
115 3bk7_A ABC transporter ATP-bin 98.7 7.2E-08 2.4E-12 88.4 9.9 73 88-188 231-303 (607)
116 3pfi_A Holliday junction ATP-d 98.7 1.5E-07 5E-12 79.9 11.1 67 18-119 54-120 (338)
117 3jvv_A Twitching mobility prot 98.7 1.7E-07 5.9E-12 80.5 11.4 39 17-55 121-159 (356)
118 1fnn_A CDC6P, cell division co 98.7 2E-07 7E-12 80.0 12.0 35 21-56 46-81 (389)
119 2cbz_A Multidrug resistance-as 98.6 2.3E-08 8E-13 81.2 5.3 41 17-57 29-74 (237)
120 3j16_B RLI1P; ribosome recycli 98.6 7.6E-08 2.6E-12 88.2 8.6 143 18-188 377-543 (608)
121 3pvs_A Replication-associated 98.6 1.4E-07 4.8E-12 83.5 9.9 69 19-119 50-120 (447)
122 2ixe_A Antigen peptide transpo 98.6 7.9E-08 2.7E-12 79.6 7.8 28 16-43 42-69 (271)
123 2zu0_C Probable ATP-dependent 98.6 5E-08 1.7E-12 80.6 6.5 27 16-42 43-69 (267)
124 2ghi_A Transport protein; mult 98.6 7.8E-08 2.7E-12 79.2 7.6 28 16-43 43-70 (260)
125 3hws_A ATP-dependent CLP prote 98.6 2.9E-08 9.9E-13 85.4 5.0 34 18-55 50-83 (363)
126 2qby_A CDC6 homolog 1, cell di 98.6 1.1E-07 3.9E-12 81.3 8.6 39 17-55 43-83 (386)
127 2chg_A Replication factor C sm 98.6 1.1E-07 3.7E-12 74.8 7.7 26 19-44 38-63 (226)
128 3u61_B DNA polymerase accessor 98.6 4.7E-07 1.6E-11 76.3 11.9 34 18-55 47-80 (324)
129 3ozx_A RNAse L inhibitor; ATP 98.6 2.1E-07 7.1E-12 84.2 10.1 31 14-44 20-50 (538)
130 2pze_A Cystic fibrosis transme 98.6 3.2E-08 1.1E-12 79.9 4.3 41 17-57 32-77 (229)
131 3j16_B RLI1P; ribosome recycli 98.6 8.3E-08 2.8E-12 88.0 7.4 57 106-188 240-296 (608)
132 4fcw_A Chaperone protein CLPB; 98.6 2.5E-07 8.5E-12 77.3 9.8 38 18-56 46-83 (311)
133 2d2e_A SUFC protein; ABC-ATPas 98.6 9.2E-08 3.2E-12 78.2 7.0 26 17-42 27-52 (250)
134 3m6a_A ATP-dependent protease 98.5 7.7E-08 2.6E-12 87.2 6.2 34 18-55 107-140 (543)
135 2pjz_A Hypothetical protein ST 98.5 1E-07 3.6E-12 78.5 6.4 26 17-43 29-54 (263)
136 1njg_A DNA polymerase III subu 98.5 1E-06 3.5E-11 69.9 11.9 26 19-44 45-70 (250)
137 3b5x_A Lipid A export ATP-bind 98.5 2.7E-07 9.1E-12 84.3 9.2 28 17-44 367-394 (582)
138 1um8_A ATP-dependent CLP prote 98.5 2.8E-07 9.7E-12 79.5 8.8 34 18-55 71-104 (376)
139 2qby_B CDC6 homolog 3, cell di 98.5 3.3E-07 1.1E-11 78.7 9.1 38 18-55 44-88 (384)
140 1c9k_A COBU, adenosylcobinamid 98.5 4E-07 1.4E-11 70.7 8.6 32 22-58 2-33 (180)
141 1sxj_A Activator 1 95 kDa subu 98.5 8.9E-07 3E-11 79.7 11.7 35 18-56 76-110 (516)
142 3qf4_B Uncharacterized ABC tra 98.5 1.8E-07 6.2E-12 85.7 7.1 28 17-44 379-406 (598)
143 2bjv_A PSP operon transcriptio 98.5 9.3E-07 3.2E-11 72.4 10.7 38 17-55 27-64 (265)
144 1sxj_E Activator 1 40 kDa subu 98.5 1.3E-06 4.5E-11 74.3 11.5 25 20-44 37-61 (354)
145 3gd7_A Fusion complex of cysti 98.5 1.1E-07 3.7E-12 82.7 4.7 27 16-42 44-70 (390)
146 1hqc_A RUVB; extended AAA-ATPa 98.5 3E-07 1E-11 77.3 7.2 34 18-55 37-70 (324)
147 3b60_A Lipid A export ATP-bind 98.5 3.1E-07 1E-11 83.9 7.8 28 17-44 367-394 (582)
148 2eyu_A Twitching motility prot 98.5 8.8E-07 3E-11 72.9 9.8 40 16-55 22-61 (261)
149 1w4r_A Thymidine kinase; type 98.5 1.8E-06 6.1E-11 67.7 11.0 43 14-57 15-57 (195)
150 3qf4_A ABC transporter, ATP-bi 98.4 1.2E-07 4.2E-12 86.6 4.9 27 17-43 367-393 (587)
151 1r6b_X CLPA protein; AAA+, N-t 98.4 1.2E-06 4.2E-11 82.3 11.7 83 17-120 205-293 (758)
152 1qvr_A CLPB protein; coiled co 98.4 6.2E-07 2.1E-11 85.4 9.8 83 18-120 190-278 (854)
153 2bbs_A Cystic fibrosis transme 98.4 2.3E-07 7.7E-12 77.6 5.9 41 17-57 62-107 (290)
154 3uk6_A RUVB-like 2; hexameric 98.4 7.1E-07 2.4E-11 76.4 9.2 36 18-55 69-104 (368)
155 2pt7_A CAG-ALFA; ATPase, prote 98.4 6.1E-07 2.1E-11 76.3 8.6 83 17-116 169-251 (330)
156 2r2a_A Uncharacterized protein 98.4 5.9E-07 2E-11 70.9 7.8 24 20-43 6-29 (199)
157 1g41_A Heat shock protein HSLU 98.4 6.4E-08 2.2E-12 85.3 2.3 129 18-189 49-178 (444)
158 1sxj_D Activator 1 41 kDa subu 98.4 1.2E-06 4.2E-11 74.3 9.8 36 20-55 59-96 (353)
159 3pxi_A Negative regulator of g 98.4 1.1E-06 3.9E-11 82.5 10.2 35 20-55 522-556 (758)
160 2yl4_A ATP-binding cassette SU 98.4 3.1E-07 1.1E-11 84.1 6.2 27 17-43 368-394 (595)
161 1xx6_A Thymidine kinase; NESG, 98.4 1.5E-06 5E-11 68.2 9.0 38 17-55 6-43 (191)
162 4a82_A Cystic fibrosis transme 98.4 1.4E-07 5E-12 86.0 3.4 27 17-43 365-391 (578)
163 1ojl_A Transcriptional regulat 98.4 2.2E-06 7.6E-11 71.9 10.1 38 17-55 23-60 (304)
164 3dm5_A SRP54, signal recogniti 98.3 2.9E-06 1E-10 74.7 11.0 40 17-57 98-137 (443)
165 2j9r_A Thymidine kinase; TK1, 98.3 4.6E-06 1.6E-10 66.3 11.1 38 17-55 26-63 (214)
166 1ye8_A Protein THEP1, hypothet 98.3 3.4E-06 1.2E-10 65.3 10.1 23 21-43 2-24 (178)
167 1a5t_A Delta prime, HOLB; zinc 98.3 4.9E-06 1.7E-10 70.6 11.9 27 18-44 23-49 (334)
168 3ux8_A Excinuclease ABC, A sub 98.3 2.6E-06 9E-11 79.0 11.0 54 106-186 221-276 (670)
169 4f4c_A Multidrug resistance pr 98.3 5.9E-07 2E-11 89.1 6.5 28 17-44 442-469 (1321)
170 1r6b_X CLPA protein; AAA+, N-t 98.3 3.7E-06 1.3E-10 79.0 11.4 35 18-56 487-521 (758)
171 2i3b_A HCR-ntpase, human cance 98.3 1.6E-06 5.5E-11 67.9 7.2 29 19-48 1-29 (189)
172 2gno_A DNA polymerase III, gam 98.3 7.3E-06 2.5E-10 68.9 11.7 75 19-119 18-96 (305)
173 1iqp_A RFCS; clamp loader, ext 98.3 2.6E-06 8.9E-11 71.3 8.9 27 18-44 45-71 (327)
174 1jr3_A DNA polymerase III subu 98.3 3.1E-06 1.1E-10 72.3 9.4 26 19-44 38-63 (373)
175 2iw3_A Elongation factor 3A; a 98.3 1.4E-06 4.8E-11 83.4 7.7 141 17-188 459-620 (986)
176 2px0_A Flagellar biosynthesis 98.3 2.7E-06 9.2E-11 71.2 8.6 41 17-57 103-143 (296)
177 2ewv_A Twitching motility prot 98.3 3E-06 1E-10 73.2 8.9 40 16-55 133-172 (372)
178 3thx_A DNA mismatch repair pro 98.2 2E-06 6.7E-11 82.3 8.0 26 17-42 660-685 (934)
179 3pxg_A Negative regulator of g 98.2 2E-06 6.9E-11 76.5 7.5 28 17-44 199-226 (468)
180 2chq_A Replication factor C sm 98.2 1.6E-06 5.5E-11 72.4 6.4 36 20-55 39-75 (319)
181 3kl4_A SRP54, signal recogniti 98.2 6.7E-06 2.3E-10 72.2 10.5 40 17-57 95-134 (433)
182 1sxj_C Activator 1 40 kDa subu 98.2 2.6E-06 8.8E-11 72.4 7.6 23 22-44 49-71 (340)
183 1in4_A RUVB, holliday junction 98.2 3.1E-06 1.1E-10 71.9 8.0 26 18-43 50-75 (334)
184 2r8r_A Sensor protein; KDPD, P 98.2 7.2E-06 2.5E-10 65.8 9.4 39 18-57 4-43 (228)
185 1sxj_B Activator 1 37 kDa subu 98.2 3.8E-06 1.3E-10 70.2 8.2 36 20-55 43-79 (323)
186 3e1s_A Exodeoxyribonuclease V, 98.2 1.6E-06 5.5E-11 79.0 6.4 39 18-57 203-241 (574)
187 1qvr_A CLPB protein; coiled co 98.2 4.7E-06 1.6E-10 79.4 9.7 37 19-56 588-624 (854)
188 3thx_B DNA mismatch repair pro 98.2 3.3E-06 1.1E-10 80.5 8.3 26 17-42 671-696 (918)
189 1wb9_A DNA mismatch repair pro 98.2 6.1E-06 2.1E-10 77.8 10.0 27 17-43 605-631 (800)
190 4f4c_A Multidrug resistance pr 98.1 1.5E-06 5E-11 86.3 5.0 28 17-44 1103-1130(1321)
191 1vma_A Cell division protein F 98.1 2.2E-06 7.6E-11 72.1 5.5 40 17-57 102-141 (306)
192 3pxi_A Negative regulator of g 98.1 4E-06 1.4E-10 78.8 7.5 28 17-44 199-226 (758)
193 2o8b_B DNA mismatch repair pro 98.1 3.2E-06 1.1E-10 81.7 6.9 25 19-43 789-813 (1022)
194 3g5u_A MCG1178, multidrug resi 98.1 1.6E-06 5.5E-11 85.8 4.9 27 17-43 414-440 (1284)
195 3nbx_X ATPase RAVA; AAA+ ATPas 98.1 6.5E-06 2.2E-10 73.7 8.4 36 18-55 40-75 (500)
196 2orv_A Thymidine kinase; TP4A 98.1 2.6E-05 9E-10 62.6 11.0 38 17-55 17-54 (234)
197 3ux8_A Excinuclease ABC, A sub 98.1 1E-05 3.5E-10 75.0 9.1 74 87-187 545-619 (670)
198 4aby_A DNA repair protein RECN 98.1 9.7E-06 3.3E-10 70.6 8.3 26 17-43 59-84 (415)
199 1w5s_A Origin recognition comp 98.1 6.6E-06 2.2E-10 71.1 7.0 39 18-56 49-94 (412)
200 3g5u_A MCG1178, multidrug resi 98.0 3.3E-06 1.1E-10 83.6 5.3 27 17-43 1057-1083(1284)
201 3upu_A ATP-dependent DNA helic 98.0 7.8E-06 2.7E-10 72.4 7.2 36 20-56 46-82 (459)
202 3e2i_A Thymidine kinase; Zn-bi 98.0 2.4E-05 8.4E-10 62.1 8.6 38 17-55 26-63 (219)
203 3llm_A ATP-dependent RNA helic 98.0 5.7E-05 2E-09 60.6 10.9 41 17-57 74-118 (235)
204 3uie_A Adenylyl-sulfate kinase 98.0 7E-06 2.4E-10 64.4 5.3 40 17-57 23-62 (200)
205 1ewq_A DNA mismatch repair pro 98.0 2E-05 7E-10 73.9 9.1 25 19-43 576-600 (765)
206 1zp6_A Hypothetical protein AT 98.0 6.3E-06 2.2E-10 63.8 4.5 37 17-57 7-43 (191)
207 1zu4_A FTSY; GTPase, signal re 98.0 4.3E-05 1.5E-09 64.6 9.9 40 17-57 103-142 (320)
208 1j8m_F SRP54, signal recogniti 97.9 9.4E-06 3.2E-10 67.9 5.4 39 18-57 97-135 (297)
209 1ls1_A Signal recognition part 97.9 1.3E-05 4.3E-10 67.1 5.9 39 18-57 97-135 (295)
210 2yvu_A Probable adenylyl-sulfa 97.9 1.3E-05 4.3E-10 62.0 5.3 40 17-57 11-50 (186)
211 1g5t_A COB(I)alamin adenosyltr 97.9 0.00016 5.4E-09 56.7 10.8 37 18-55 27-63 (196)
212 2yhs_A FTSY, cell division pro 97.9 0.00023 7.7E-09 63.4 13.1 40 16-56 290-329 (503)
213 1tue_A Replication protein E1; 97.9 8E-06 2.7E-10 64.5 3.3 27 18-44 57-83 (212)
214 4akg_A Glutathione S-transfera 97.8 0.00012 4E-09 76.8 12.7 35 18-55 1266-1300(2695)
215 2gxq_A Heat resistant RNA depe 97.8 5E-05 1.7E-09 59.3 7.9 40 18-57 37-81 (207)
216 3c8u_A Fructokinase; YP_612366 97.8 1.9E-05 6.4E-10 62.3 5.0 41 16-57 19-59 (208)
217 3pih_A Uvrabc system protein A 97.8 0.00021 7.3E-09 68.2 12.7 57 105-188 826-882 (916)
218 1kht_A Adenylate kinase; phosp 97.8 2.2E-05 7.6E-10 60.4 5.0 36 19-55 3-38 (192)
219 1nks_A Adenylate kinase; therm 97.8 2.5E-05 8.4E-10 60.2 5.2 34 21-55 3-36 (194)
220 3aez_A Pantothenate kinase; tr 97.8 3.2E-05 1.1E-09 65.2 6.2 43 16-58 87-130 (312)
221 1rj9_A FTSY, signal recognitio 97.8 3.4E-05 1.2E-09 64.8 6.3 40 17-57 100-139 (304)
222 1qhx_A CPT, protein (chloramph 97.8 2.7E-05 9.3E-10 59.4 5.2 33 19-55 3-35 (178)
223 2ffh_A Protein (FFH); SRP54, s 97.8 4.6E-05 1.6E-09 66.8 7.0 39 18-57 97-135 (425)
224 2pez_A Bifunctional 3'-phospho 97.8 3E-05 1E-09 59.5 5.2 39 18-57 4-42 (179)
225 3tr0_A Guanylate kinase, GMP k 97.7 1.9E-05 6.4E-10 61.7 3.8 26 17-42 5-30 (205)
226 3vaa_A Shikimate kinase, SK; s 97.7 2.1E-05 7.1E-10 61.6 4.1 27 17-43 23-49 (199)
227 2vf7_A UVRA2, excinuclease ABC 97.7 0.00015 5.2E-09 68.6 10.6 56 106-188 752-807 (842)
228 4eun_A Thermoresistant glucoki 97.7 2.1E-05 7.3E-10 61.5 4.1 35 17-57 27-61 (200)
229 2j37_W Signal recognition part 97.7 0.00068 2.3E-08 60.7 14.1 40 17-57 99-138 (504)
230 1t6n_A Probable ATP-dependent 97.7 0.00038 1.3E-08 54.8 11.3 40 18-57 50-91 (220)
231 2fz4_A DNA repair protein RAD2 97.7 0.00019 6.4E-09 57.8 9.4 36 18-57 107-142 (237)
232 1kgd_A CASK, peripheral plasma 97.7 2.4E-05 8.2E-10 60.3 3.8 26 18-43 4-29 (180)
233 2ygr_A Uvrabc system protein A 97.7 0.00023 7.7E-09 68.2 11.1 56 106-188 885-940 (993)
234 1rz3_A Hypothetical protein rb 97.7 4E-05 1.4E-09 60.1 5.1 40 17-57 20-59 (201)
235 1knq_A Gluconate kinase; ALFA/ 97.7 2.9E-05 9.7E-10 59.2 4.1 26 17-42 6-31 (175)
236 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 3.7E-05 1.3E-09 62.9 4.9 39 18-57 3-41 (260)
237 2gza_A Type IV secretion syste 97.7 0.00029 1E-08 60.4 10.7 37 17-55 173-209 (361)
238 1kag_A SKI, shikimate kinase I 97.7 2.4E-05 8.1E-10 59.5 3.5 24 19-42 4-27 (173)
239 3e70_C DPA, signal recognition 97.7 4.2E-05 1.4E-09 64.9 5.3 40 17-57 127-166 (328)
240 3b9q_A Chloroplast SRP recepto 97.7 4.1E-05 1.4E-09 64.2 5.2 41 16-57 97-137 (302)
241 1m7g_A Adenylylsulfate kinase; 97.7 3.3E-05 1.1E-09 61.0 4.4 40 17-56 23-62 (211)
242 1znw_A Guanylate kinase, GMP k 97.7 2.6E-05 8.7E-10 61.5 3.7 29 15-43 16-44 (207)
243 2plr_A DTMP kinase, probable t 97.7 4.8E-05 1.6E-09 59.5 5.2 35 18-54 3-37 (213)
244 2r6f_A Excinuclease ABC subuni 97.7 0.00028 9.6E-09 67.4 11.3 56 106-188 867-922 (972)
245 3tau_A Guanylate kinase, GMP k 97.7 3.2E-05 1.1E-09 61.0 4.0 27 17-43 6-32 (208)
246 2j41_A Guanylate kinase; GMP, 97.7 3.2E-05 1.1E-09 60.4 4.0 27 17-43 4-30 (207)
247 1htw_A HI0065; nucleotide-bind 97.7 3.6E-05 1.2E-09 58.3 4.1 27 17-43 31-57 (158)
248 1w36_D RECD, exodeoxyribonucle 97.6 0.00014 4.9E-09 66.6 8.8 40 18-57 163-205 (608)
249 2xau_A PRE-mRNA-splicing facto 97.6 0.00048 1.6E-08 64.9 12.3 41 17-57 107-149 (773)
250 2iw3_A Elongation factor 3A; a 97.6 2.9E-05 9.9E-10 74.4 4.1 27 17-43 697-723 (986)
251 1vec_A ATP-dependent RNA helic 97.6 0.00014 4.9E-09 56.6 7.4 40 18-57 39-80 (206)
252 1qde_A EIF4A, translation init 97.6 9.6E-05 3.3E-09 58.5 6.4 40 18-57 50-91 (224)
253 3asz_A Uridine kinase; cytidin 97.6 5.8E-05 2E-09 59.3 5.1 37 17-57 4-40 (211)
254 3trf_A Shikimate kinase, SK; a 97.6 3.9E-05 1.3E-09 58.9 4.0 25 19-43 5-29 (185)
255 2xxa_A Signal recognition part 97.6 0.0001 3.5E-09 64.8 7.0 39 18-57 99-138 (433)
256 2qor_A Guanylate kinase; phosp 97.6 3.5E-05 1.2E-09 60.5 3.6 27 17-43 10-36 (204)
257 3kb2_A SPBC2 prophage-derived 97.6 3.9E-05 1.3E-09 58.0 3.8 23 21-43 3-25 (173)
258 2va8_A SSO2462, SKI2-type heli 97.6 0.00038 1.3E-08 64.8 11.2 41 17-57 44-84 (715)
259 2rhm_A Putative kinase; P-loop 97.6 3.8E-05 1.3E-09 59.3 3.7 26 18-43 4-29 (193)
260 2zj8_A DNA helicase, putative 97.6 0.00012 4.1E-09 68.3 7.7 41 17-57 37-77 (720)
261 1gvn_B Zeta; postsegregational 97.6 4.1E-05 1.4E-09 63.6 4.0 36 17-56 31-66 (287)
262 2r44_A Uncharacterized protein 97.6 3.9E-05 1.3E-09 64.6 4.0 34 18-55 45-78 (331)
263 3dkp_A Probable ATP-dependent 97.6 0.00017 5.7E-09 58.0 7.5 40 18-57 65-107 (245)
264 1ly1_A Polynucleotide kinase; 97.6 3.6E-05 1.2E-09 58.7 3.3 32 20-56 3-34 (181)
265 3l9o_A ATP-dependent RNA helic 97.6 0.00042 1.4E-08 67.7 11.5 40 17-57 197-236 (1108)
266 3cm0_A Adenylate kinase; ATP-b 97.6 3.7E-05 1.3E-09 59.1 3.4 26 18-43 3-28 (186)
267 3iij_A Coilin-interacting nucl 97.6 5.1E-05 1.7E-09 58.1 4.2 27 17-43 9-35 (180)
268 3bor_A Human initiation factor 97.6 8.3E-05 2.8E-09 59.7 5.5 40 18-57 66-107 (237)
269 3bfv_A CAPA1, CAPB2, membrane 97.6 0.00031 1.1E-08 57.8 9.1 39 18-57 81-120 (271)
270 2og2_A Putative signal recogni 97.6 7E-05 2.4E-09 64.2 5.2 41 16-57 154-194 (359)
271 2bbw_A Adenylate kinase 4, AK4 97.6 5E-05 1.7E-09 61.4 4.1 26 18-43 26-51 (246)
272 1nn5_A Similar to deoxythymidy 97.6 9.2E-05 3.1E-09 58.1 5.4 36 18-54 8-43 (215)
273 1s96_A Guanylate kinase, GMP k 97.6 4.7E-05 1.6E-09 60.8 3.7 28 17-44 14-41 (219)
274 3a00_A Guanylate kinase, GMP k 97.5 4.4E-05 1.5E-09 59.1 3.4 26 19-44 1-26 (186)
275 1lvg_A Guanylate kinase, GMP k 97.5 4.5E-05 1.6E-09 59.7 3.5 26 18-43 3-28 (198)
276 1y63_A LMAJ004144AAA protein; 97.5 6.1E-05 2.1E-09 58.2 4.1 26 17-42 8-33 (184)
277 2bdt_A BH3686; alpha-beta prot 97.5 3.6E-05 1.2E-09 59.5 2.8 23 19-41 2-24 (189)
278 1z6g_A Guanylate kinase; struc 97.5 4.3E-05 1.5E-09 60.8 3.4 27 17-43 21-47 (218)
279 2c95_A Adenylate kinase 1; tra 97.5 6.1E-05 2.1E-09 58.2 4.0 26 18-43 8-33 (196)
280 3umf_A Adenylate kinase; rossm 97.5 6.3E-05 2.2E-09 60.0 4.1 35 17-57 27-61 (217)
281 3sr0_A Adenylate kinase; phosp 97.5 6.5E-05 2.2E-09 59.4 4.0 31 21-57 2-32 (206)
282 3b6e_A Interferon-induced heli 97.5 0.00024 8.2E-09 55.5 7.3 40 18-57 47-91 (216)
283 3iuy_A Probable ATP-dependent 97.5 0.00025 8.6E-09 56.3 7.5 40 18-57 56-103 (228)
284 2pbr_A DTMP kinase, thymidylat 97.5 0.00011 3.8E-09 56.5 5.2 34 21-55 2-35 (195)
285 1tev_A UMP-CMP kinase; ploop, 97.5 5.8E-05 2E-09 58.1 3.6 25 19-43 3-27 (196)
286 2p6r_A Afuhel308 helicase; pro 97.5 0.00015 5.1E-09 67.5 6.8 40 17-57 38-77 (702)
287 2v6i_A RNA helicase; membrane, 97.5 0.0006 2E-08 59.8 10.4 39 18-57 1-40 (431)
288 2wwf_A Thymidilate kinase, put 97.5 0.00012 4E-09 57.4 5.3 34 18-52 9-42 (212)
289 3lw7_A Adenylate kinase relate 97.5 5.4E-05 1.8E-09 57.1 3.1 20 20-39 2-21 (179)
290 2p5t_B PEZT; postsegregational 97.5 4.7E-05 1.6E-09 62.0 2.9 38 16-57 29-66 (253)
291 3t61_A Gluconokinase; PSI-biol 97.5 7.5E-05 2.5E-09 58.3 4.0 26 18-43 17-42 (202)
292 1u0j_A DNA replication protein 97.5 7.6E-05 2.6E-09 61.3 4.1 26 18-43 103-128 (267)
293 1aky_A Adenylate kinase; ATP:A 97.5 7.8E-05 2.7E-09 59.1 4.1 26 18-43 3-28 (220)
294 2cdn_A Adenylate kinase; phosp 97.5 9E-05 3.1E-09 57.8 4.4 27 17-43 18-44 (201)
295 2z0h_A DTMP kinase, thymidylat 97.5 0.00012 4E-09 56.6 5.0 34 21-55 2-35 (197)
296 3cio_A ETK, tyrosine-protein k 97.5 0.00044 1.5E-08 57.7 8.8 39 18-57 103-142 (299)
297 1p9r_A General secretion pathw 97.5 0.00011 3.7E-09 64.4 5.2 38 17-55 165-202 (418)
298 2qt1_A Nicotinamide riboside k 97.5 7E-05 2.4E-09 58.7 3.6 39 15-58 17-55 (207)
299 3fe2_A Probable ATP-dependent 97.5 0.00017 5.8E-09 58.0 6.0 40 18-57 65-111 (242)
300 1ukz_A Uridylate kinase; trans 97.5 8.5E-05 2.9E-09 58.0 4.0 26 17-42 13-38 (203)
301 1via_A Shikimate kinase; struc 97.4 7.8E-05 2.7E-09 56.9 3.5 23 21-43 6-28 (175)
302 2iyv_A Shikimate kinase, SK; t 97.4 7.9E-05 2.7E-09 57.2 3.5 24 20-43 3-26 (184)
303 2vli_A Antibiotic resistance p 97.4 5.5E-05 1.9E-09 57.9 2.6 25 18-42 4-28 (183)
304 2ze6_A Isopentenyl transferase 97.4 8.2E-05 2.8E-09 60.6 3.7 23 21-43 3-25 (253)
305 4b3f_X DNA-binding protein smu 97.4 0.00014 4.7E-09 67.1 5.6 39 18-57 204-242 (646)
306 2xgj_A ATP-dependent RNA helic 97.4 0.00054 1.8E-08 66.3 9.9 39 18-57 100-138 (1010)
307 2bwj_A Adenylate kinase 5; pho 97.4 9.4E-05 3.2E-09 57.3 3.8 26 18-43 11-36 (199)
308 3pey_A ATP-dependent RNA helic 97.4 0.00032 1.1E-08 59.8 7.4 39 19-57 44-84 (395)
309 2v9p_A Replication protein E1; 97.4 0.0001 3.5E-09 61.8 4.2 28 16-43 123-150 (305)
310 3lnc_A Guanylate kinase, GMP k 97.4 5.8E-05 2E-09 60.4 2.5 27 17-43 25-52 (231)
311 3ney_A 55 kDa erythrocyte memb 97.4 0.00012 4.1E-09 57.5 4.2 27 17-43 17-43 (197)
312 1q0u_A Bstdead; DEAD protein, 97.4 0.00023 8E-09 56.2 5.9 40 18-57 40-81 (219)
313 4eaq_A DTMP kinase, thymidylat 97.4 0.00018 6.3E-09 57.7 5.2 36 17-54 24-59 (229)
314 3b85_A Phosphate starvation-in 97.4 7.3E-05 2.5E-09 59.2 2.8 31 17-48 20-50 (208)
315 2qm8_A GTPase/ATPase; G protei 97.4 0.0002 6.9E-09 60.9 5.6 40 16-56 52-91 (337)
316 1zd8_A GTP:AMP phosphotransfer 97.4 0.0001 3.5E-09 58.7 3.6 25 18-42 6-30 (227)
317 1xjc_A MOBB protein homolog; s 97.4 0.00021 7.1E-09 54.7 5.1 37 19-56 4-40 (169)
318 1wrb_A DJVLGB; RNA helicase, D 97.4 0.00034 1.2E-08 56.4 6.7 40 18-57 59-109 (253)
319 1ak2_A Adenylate kinase isoenz 97.4 0.00014 4.6E-09 58.3 4.2 27 17-43 14-40 (233)
320 2v54_A DTMP kinase, thymidylat 97.4 0.00011 3.9E-09 57.1 3.6 35 18-55 3-37 (204)
321 2jeo_A Uridine-cytidine kinase 97.4 0.00012 4.2E-09 59.1 3.9 41 17-57 23-67 (245)
322 1zak_A Adenylate kinase; ATP:A 97.4 0.00012 3.9E-09 58.2 3.7 26 18-43 4-29 (222)
323 1sq5_A Pantothenate kinase; P- 97.4 0.00021 7.3E-09 59.8 5.5 41 17-57 78-119 (308)
324 3fb4_A Adenylate kinase; psych 97.4 0.00012 4.2E-09 57.6 3.7 23 21-43 2-24 (216)
325 3tlx_A Adenylate kinase 2; str 97.3 0.00013 4.3E-09 59.1 3.8 27 17-43 27-53 (243)
326 1s2m_A Putative ATP-dependent 97.3 0.00049 1.7E-08 59.0 7.8 40 18-57 57-98 (400)
327 4dzz_A Plasmid partitioning pr 97.3 0.0036 1.2E-07 48.4 12.1 84 21-117 3-87 (206)
328 1g8p_A Magnesium-chelatase 38 97.3 4.8E-05 1.6E-09 64.3 1.3 27 18-44 44-70 (350)
329 1zuh_A Shikimate kinase; alpha 97.3 0.00015 5E-09 54.9 3.8 26 18-43 6-31 (168)
330 1svm_A Large T antigen; AAA+ f 97.3 0.00013 4.4E-09 63.0 3.8 27 16-42 166-192 (377)
331 1cke_A CK, MSSA, protein (cyti 97.3 0.00015 5.3E-09 57.4 4.0 24 19-42 5-28 (227)
332 3dl0_A Adenylate kinase; phosp 97.3 0.00013 4.4E-09 57.5 3.5 21 21-41 2-22 (216)
333 1qf9_A UMP/CMP kinase, protein 97.3 0.00013 4.6E-09 56.0 3.5 24 19-42 6-29 (194)
334 4e22_A Cytidylate kinase; P-lo 97.3 0.00016 5.6E-09 58.7 4.1 26 17-42 25-50 (252)
335 1hv8_A Putative ATP-dependent 97.3 0.00049 1.7E-08 57.9 7.2 39 19-57 44-83 (367)
336 1e6c_A Shikimate kinase; phosp 97.3 0.00015 5E-09 54.9 3.5 24 20-43 3-26 (173)
337 2jaq_A Deoxyguanosine kinase; 97.3 0.00016 5.3E-09 56.2 3.7 24 21-44 2-25 (205)
338 3be4_A Adenylate kinase; malar 97.3 0.00015 5.3E-09 57.3 3.6 26 18-43 4-29 (217)
339 2v3c_C SRP54, signal recogniti 97.3 9.7E-05 3.3E-09 65.0 2.6 39 18-57 98-136 (432)
340 3ber_A Probable ATP-dependent 97.3 0.00053 1.8E-08 55.4 6.7 40 18-57 79-120 (249)
341 1gtv_A TMK, thymidylate kinase 97.3 9.6E-05 3.3E-09 58.0 2.1 34 21-55 2-35 (214)
342 1np6_A Molybdopterin-guanine d 97.3 0.00034 1.2E-08 53.8 5.1 36 19-55 6-41 (174)
343 2jlq_A Serine protease subunit 97.2 0.002 6.7E-08 56.8 10.4 40 17-57 17-57 (451)
344 2pt5_A Shikimate kinase, SK; a 97.2 0.00022 7.4E-09 53.7 3.7 23 21-43 2-24 (168)
345 3p32_A Probable GTPase RV1496/ 97.2 0.00042 1.4E-08 59.2 5.8 40 17-57 77-116 (355)
346 1jjv_A Dephospho-COA kinase; P 97.2 0.00018 6.3E-09 56.2 3.3 21 21-41 4-24 (206)
347 3ly5_A ATP-dependent RNA helic 97.2 0.00027 9.2E-09 57.7 4.4 40 18-57 90-135 (262)
348 4edh_A DTMP kinase, thymidylat 97.2 0.00039 1.3E-08 55.2 5.2 36 18-54 5-40 (213)
349 2f6r_A COA synthase, bifunctio 97.2 0.00024 8.3E-09 58.7 4.1 23 18-40 74-96 (281)
350 3szr_A Interferon-induced GTP- 97.2 0.0011 3.8E-08 60.7 8.9 23 21-43 47-69 (608)
351 4a4z_A Antiviral helicase SKI2 97.2 0.001 3.5E-08 64.4 9.0 41 17-58 52-92 (997)
352 2pl3_A Probable ATP-dependent 97.2 0.00062 2.1E-08 54.2 6.4 40 18-57 61-106 (236)
353 2if2_A Dephospho-COA kinase; a 97.2 0.00021 7.1E-09 55.8 3.3 30 21-55 3-32 (204)
354 3tqc_A Pantothenate kinase; bi 97.2 0.00045 1.5E-08 58.3 5.5 41 18-58 91-132 (321)
355 3cr8_A Sulfate adenylyltranfer 97.2 0.00024 8.1E-09 64.4 4.1 41 17-57 367-407 (552)
356 3eiq_A Eukaryotic initiation f 97.2 0.00045 1.5E-08 59.4 5.7 40 18-57 76-117 (414)
357 3nwj_A ATSK2; P loop, shikimat 97.2 0.00025 8.4E-09 57.8 3.8 26 19-44 48-73 (250)
358 2fna_A Conserved hypothetical 97.2 0.0004 1.4E-08 58.4 5.1 34 20-57 31-64 (357)
359 3k1j_A LON protease, ATP-depen 97.2 0.00025 8.4E-09 65.0 4.1 28 17-44 58-85 (604)
360 2npi_A Protein CLP1; CLP1-PCF1 97.2 0.00023 8E-09 63.0 3.7 39 17-55 136-174 (460)
361 1e4v_A Adenylate kinase; trans 97.1 0.00026 8.9E-09 55.8 3.6 23 21-43 2-24 (214)
362 1ex7_A Guanylate kinase; subst 97.1 0.00025 8.5E-09 55.2 3.4 24 20-43 2-25 (186)
363 3lv8_A DTMP kinase, thymidylat 97.1 0.00051 1.7E-08 55.4 5.3 36 18-54 26-62 (236)
364 2xb4_A Adenylate kinase; ATP-b 97.1 0.00029 9.8E-09 56.1 3.7 23 21-43 2-24 (223)
365 2oxc_A Probable ATP-dependent 97.1 0.00076 2.6E-08 53.7 6.2 40 18-57 60-101 (230)
366 3r20_A Cytidylate kinase; stru 97.1 0.00029 9.8E-09 56.8 3.7 26 18-43 8-33 (233)
367 2ius_A DNA translocase FTSK; n 97.1 0.0062 2.1E-07 54.5 12.6 41 17-57 165-208 (512)
368 3kta_A Chromosome segregation 97.1 0.00038 1.3E-08 53.2 4.3 26 18-44 26-51 (182)
369 1wp9_A ATP-dependent RNA helic 97.1 0.003 1E-07 54.8 10.4 37 21-57 25-61 (494)
370 3vkw_A Replicase large subunit 97.1 0.0028 9.4E-08 55.7 9.9 35 17-57 159-193 (446)
371 3zq6_A Putative arsenical pump 97.1 0.00069 2.3E-08 57.1 5.9 37 20-57 15-51 (324)
372 1a7j_A Phosphoribulokinase; tr 97.1 0.00023 7.9E-09 59.2 2.9 40 18-58 4-43 (290)
373 1uf9_A TT1252 protein; P-loop, 97.1 0.00031 1.1E-08 54.5 3.5 24 18-41 7-30 (203)
374 2z83_A Helicase/nucleoside tri 97.1 0.0012 4.2E-08 58.3 7.7 42 15-57 17-59 (459)
375 2qmh_A HPR kinase/phosphorylas 97.1 0.00026 9E-09 55.5 3.0 25 18-42 33-57 (205)
376 3fho_A ATP-dependent RNA helic 97.1 0.00084 2.9E-08 60.0 6.7 39 19-57 158-198 (508)
377 4ag6_A VIRB4 ATPase, type IV s 97.1 0.00069 2.4E-08 58.5 5.9 40 18-58 34-73 (392)
378 2qen_A Walker-type ATPase; unk 97.1 0.00051 1.7E-08 57.6 4.9 32 19-56 31-62 (350)
379 4a2p_A RIG-I, retinoic acid in 97.1 0.0036 1.2E-07 55.8 10.8 40 18-57 21-64 (556)
380 1odf_A YGR205W, hypothetical 3 97.1 0.00039 1.3E-08 57.8 4.1 42 17-58 29-72 (290)
381 2j0s_A ATP-dependent RNA helic 97.1 0.00095 3.2E-08 57.4 6.7 40 18-57 73-114 (410)
382 1yrb_A ATP(GTP)binding protein 97.1 0.00072 2.5E-08 54.7 5.6 39 17-57 12-50 (262)
383 1xti_A Probable ATP-dependent 97.1 0.0027 9.2E-08 54.0 9.5 41 17-57 43-85 (391)
384 2p67_A LAO/AO transport system 97.1 0.00058 2E-08 58.0 5.2 41 16-57 53-93 (341)
385 2gk6_A Regulator of nonsense t 97.1 0.00062 2.1E-08 62.5 5.6 40 18-57 194-233 (624)
386 2whx_A Serine protease/ntpase/ 97.0 0.0019 6.5E-08 59.3 8.6 41 16-57 183-224 (618)
387 1yks_A Genome polyprotein [con 97.0 0.00093 3.2E-08 58.7 6.2 41 16-57 5-46 (440)
388 3crm_A TRNA delta(2)-isopenten 97.0 0.00053 1.8E-08 57.8 4.3 23 20-42 6-28 (323)
389 3v9p_A DTMP kinase, thymidylat 97.0 0.00049 1.7E-08 55.2 3.9 37 17-54 23-63 (227)
390 3ice_A Transcription terminati 97.0 0.00085 2.9E-08 58.0 5.5 38 17-54 172-210 (422)
391 2www_A Methylmalonic aciduria 97.0 0.00079 2.7E-08 57.4 5.3 37 18-55 73-109 (349)
392 3a8t_A Adenylate isopentenyltr 97.0 0.00045 1.5E-08 58.6 3.6 24 18-41 39-62 (339)
393 1uj2_A Uridine-cytidine kinase 97.0 0.00047 1.6E-08 55.8 3.6 41 18-58 21-65 (252)
394 1ltq_A Polynucleotide kinase; 97.0 0.00041 1.4E-08 57.5 3.3 22 20-41 3-24 (301)
395 1vht_A Dephospho-COA kinase; s 97.0 0.00046 1.6E-08 54.4 3.5 23 19-41 4-26 (218)
396 2z0m_A 337AA long hypothetical 97.0 0.00073 2.5E-08 56.2 4.9 36 18-57 30-65 (337)
397 2vp4_A Deoxynucleoside kinase; 97.0 0.00047 1.6E-08 55.1 3.4 36 15-55 16-51 (230)
398 1fuu_A Yeast initiation factor 97.0 0.00069 2.4E-08 57.7 4.7 40 18-57 57-98 (394)
399 1q3t_A Cytidylate kinase; nucl 97.0 0.00064 2.2E-08 54.4 4.3 27 16-42 13-39 (236)
400 3ake_A Cytidylate kinase; CMP 97.0 0.00054 1.9E-08 53.3 3.7 23 21-43 4-26 (208)
401 4tmk_A Protein (thymidylate ki 96.9 0.001 3.6E-08 52.7 5.2 36 18-54 2-38 (213)
402 2dpy_A FLII, flagellum-specifi 96.9 0.00059 2E-08 60.0 4.1 41 15-57 153-193 (438)
403 2obl_A ESCN; ATPase, hydrolase 96.9 0.00066 2.2E-08 57.9 4.3 29 16-44 68-96 (347)
404 2oap_1 GSPE-2, type II secreti 96.9 0.00051 1.7E-08 61.6 3.7 37 17-55 258-294 (511)
405 3tbk_A RIG-I helicase domain; 96.9 0.0023 8E-08 56.9 8.1 40 18-57 18-61 (555)
406 3zvl_A Bifunctional polynucleo 96.9 0.00058 2E-08 59.6 3.9 25 17-41 256-280 (416)
407 3fmo_B ATP-dependent RNA helic 96.9 0.0017 5.8E-08 54.1 6.5 40 18-57 130-171 (300)
408 3tqf_A HPR(Ser) kinase; transf 96.9 0.00055 1.9E-08 52.5 3.2 25 18-42 15-39 (181)
409 2ykg_A Probable ATP-dependent 96.9 0.0038 1.3E-07 57.6 9.3 40 18-57 27-70 (696)
410 2f1r_A Molybdopterin-guanine d 96.9 0.00065 2.2E-08 52.0 3.5 25 20-44 3-27 (171)
411 3ld9_A DTMP kinase, thymidylat 96.9 0.00064 2.2E-08 54.4 3.5 40 17-57 19-59 (223)
412 1ny5_A Transcriptional regulat 96.8 0.0098 3.4E-07 51.3 11.1 37 18-55 159-195 (387)
413 3end_A Light-independent proto 96.8 0.0012 4.2E-08 54.8 5.2 40 17-57 39-78 (307)
414 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00084 2.9E-08 50.1 3.7 26 19-44 23-48 (149)
415 2grj_A Dephospho-COA kinase; T 96.8 0.00077 2.6E-08 52.6 3.6 26 17-42 10-35 (192)
416 3q9l_A Septum site-determining 96.8 0.0075 2.6E-07 48.4 9.7 36 21-57 4-40 (260)
417 1lw7_A Transcriptional regulat 96.8 0.00055 1.9E-08 58.6 2.9 28 17-44 166-195 (365)
418 3fht_A ATP-dependent RNA helic 96.8 0.0014 5E-08 56.0 5.6 39 19-57 64-104 (412)
419 2db3_A ATP-dependent RNA helic 96.8 0.0029 9.8E-08 55.3 7.5 40 18-57 92-138 (434)
420 2ck3_D ATP synthase subunit be 96.8 0.021 7.1E-07 50.5 12.8 38 17-54 151-188 (482)
421 2wjy_A Regulator of nonsense t 96.8 0.0014 5E-08 61.8 5.7 40 18-57 370-409 (800)
422 3sop_A Neuronal-specific septi 96.8 0.00078 2.7E-08 55.4 3.5 24 21-44 4-27 (270)
423 3exa_A TRNA delta(2)-isopenten 96.8 0.00077 2.6E-08 56.6 3.4 24 19-42 3-26 (322)
424 3foz_A TRNA delta(2)-isopenten 96.8 0.00085 2.9E-08 56.2 3.6 24 19-42 10-33 (316)
425 1x6v_B Bifunctional 3'-phospho 96.8 0.0012 4E-08 60.6 4.9 38 18-56 51-88 (630)
426 1sky_E F1-ATPase, F1-ATP synth 96.7 0.0016 5.3E-08 57.7 5.3 37 18-54 150-186 (473)
427 3oiy_A Reverse gyrase helicase 96.7 0.003 1E-07 54.5 7.2 40 17-57 34-73 (414)
428 1ihu_A Arsenical pump-driving 96.7 0.002 6.9E-08 58.6 6.3 39 18-57 7-45 (589)
429 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00097 3.3E-08 56.9 3.9 24 21-44 26-49 (359)
430 3i5x_A ATP-dependent RNA helic 96.7 0.0026 8.9E-08 57.2 6.9 40 18-57 110-155 (563)
431 3h1t_A Type I site-specific re 96.7 0.004 1.4E-07 56.5 8.1 39 19-57 198-244 (590)
432 3d3q_A TRNA delta(2)-isopenten 96.7 0.00094 3.2E-08 56.7 3.6 24 20-43 8-31 (340)
433 3fmp_B ATP-dependent RNA helic 96.7 0.0026 9E-08 56.1 6.7 39 19-57 131-171 (479)
434 3kjh_A CO dehydrogenase/acetyl 96.7 0.0015 5E-08 52.2 4.3 35 22-57 3-37 (254)
435 2fwr_A DNA repair protein RAD2 96.7 0.0043 1.5E-07 54.5 7.7 36 18-57 107-142 (472)
436 1z6t_A APAF-1, apoptotic prote 96.7 0.0012 4.2E-08 59.8 4.1 38 18-55 146-186 (591)
437 1oix_A RAS-related protein RAB 96.6 0.0011 3.7E-08 51.1 3.2 23 20-42 30-52 (191)
438 2iut_A DNA translocase FTSK; n 96.6 0.019 6.3E-07 52.0 11.5 40 18-57 213-255 (574)
439 1m8p_A Sulfate adenylyltransfe 96.6 0.0018 6.2E-08 58.9 5.0 39 18-57 395-434 (573)
440 1e9r_A Conjugal transfer prote 96.6 0.0015 5E-08 57.2 4.2 42 17-59 51-92 (437)
441 2f9l_A RAB11B, member RAS onco 96.6 0.0012 4.1E-08 51.1 3.3 22 21-42 7-28 (199)
442 2wv9_A Flavivirin protease NS2 96.6 0.0034 1.2E-07 58.2 6.9 39 18-57 240-279 (673)
443 2xzl_A ATP-dependent helicase 96.6 0.0016 5.6E-08 61.5 4.8 40 18-57 374-413 (802)
444 3la6_A Tyrosine-protein kinase 96.6 0.0028 9.5E-08 52.5 5.7 39 18-57 91-130 (286)
445 2ocp_A DGK, deoxyguanosine kin 96.6 0.0012 4E-08 53.0 3.3 25 19-43 2-26 (241)
446 1cp2_A CP2, nitrogenase iron p 96.6 0.0022 7.6E-08 52.0 5.0 36 21-57 3-38 (269)
447 4a2q_A RIG-I, retinoic acid in 96.6 0.0083 2.8E-07 56.5 9.5 40 18-57 262-305 (797)
448 3f9v_A Minichromosome maintena 96.6 0.00055 1.9E-08 62.6 1.3 22 20-41 328-349 (595)
449 2rcn_A Probable GTPase ENGC; Y 96.6 0.0014 4.7E-08 56.2 3.7 26 17-42 213-238 (358)
450 2h92_A Cytidylate kinase; ross 96.6 0.0014 4.7E-08 51.6 3.5 23 19-41 3-25 (219)
451 3dmq_A RNA polymerase-associat 96.6 0.0051 1.7E-07 59.3 8.0 39 18-57 169-209 (968)
452 1g8f_A Sulfate adenylyltransfe 96.6 0.0017 5.9E-08 58.1 4.4 41 17-57 393-434 (511)
453 2gks_A Bifunctional SAT/APS ki 96.6 0.0021 7.1E-08 58.1 5.0 39 18-57 371-409 (546)
454 2qag_B Septin-6, protein NEDD5 96.6 0.0012 4E-08 57.8 3.2 26 17-42 38-65 (427)
455 2yv5_A YJEQ protein; hydrolase 96.6 0.0014 4.9E-08 54.7 3.6 27 17-44 163-189 (302)
456 2axn_A 6-phosphofructo-2-kinas 96.5 0.0025 8.6E-08 57.3 5.3 37 18-55 34-70 (520)
457 3sqw_A ATP-dependent RNA helic 96.5 0.0043 1.5E-07 56.3 6.9 40 18-57 59-104 (579)
458 1pui_A ENGB, probable GTP-bind 96.5 0.00072 2.4E-08 52.6 1.6 26 15-40 22-47 (210)
459 3ug7_A Arsenical pump-driving 96.5 0.003 1E-07 53.8 5.6 39 18-57 25-63 (349)
460 2wsm_A Hydrogenase expression/ 96.5 0.0033 1.1E-07 49.2 5.4 37 18-56 29-65 (221)
461 3eph_A TRNA isopentenyltransfe 96.5 0.0015 5.1E-08 56.7 3.5 26 19-44 2-27 (409)
462 3tmk_A Thymidylate kinase; pho 96.5 0.002 6.7E-08 51.2 3.9 27 18-44 4-30 (216)
463 2gj8_A MNME, tRNA modification 96.5 0.0015 5E-08 49.4 3.0 24 18-41 3-26 (172)
464 3qks_A DNA double-strand break 96.5 0.0019 6.5E-08 50.6 3.7 27 18-44 22-48 (203)
465 1fx0_A ATP synthase alpha chai 96.5 0.032 1.1E-06 49.6 11.9 38 17-55 161-198 (507)
466 2afh_E Nitrogenase iron protei 96.5 0.0027 9.2E-08 52.3 4.8 36 21-57 4-39 (289)
467 3euj_A Chromosome partition pr 96.5 0.0022 7.4E-08 57.0 4.4 27 17-44 28-54 (483)
468 4akg_A Glutathione S-transfera 96.5 0.011 3.9E-07 62.2 10.2 68 18-119 644-711 (2695)
469 3l0o_A Transcription terminati 96.5 0.0037 1.3E-07 54.0 5.6 39 17-55 173-212 (427)
470 2wji_A Ferrous iron transport 96.5 0.0018 6.1E-08 48.5 3.3 22 20-41 4-25 (165)
471 3qf7_A RAD50; ABC-ATPase, ATPa 96.5 0.0016 5.5E-08 55.8 3.4 57 105-188 303-359 (365)
472 2i4i_A ATP-dependent RNA helic 96.4 0.0034 1.2E-07 53.9 5.5 21 17-37 50-70 (417)
473 3iqw_A Tail-anchored protein t 96.4 0.004 1.4E-07 52.8 5.7 39 18-57 15-53 (334)
474 4a2w_A RIG-I, retinoic acid in 96.4 0.011 3.7E-07 56.8 9.4 40 18-57 262-305 (936)
475 2zej_A Dardarin, leucine-rich 96.4 0.0013 4.6E-08 50.1 2.5 21 21-41 4-24 (184)
476 1u0l_A Probable GTPase ENGC; p 96.4 0.0016 5.3E-08 54.4 3.0 27 17-43 167-193 (301)
477 3sfz_A APAF-1, apoptotic pepti 96.4 0.0063 2.2E-07 59.4 7.6 39 18-56 146-187 (1249)
478 1ksh_A ARF-like protein 2; sma 96.4 0.0019 6.4E-08 49.1 3.2 24 18-41 17-40 (186)
479 2woo_A ATPase GET3; tail-ancho 96.4 0.0051 1.7E-07 51.9 6.0 39 18-57 18-56 (329)
480 1p5z_B DCK, deoxycytidine kina 96.3 0.00086 2.9E-08 54.6 1.0 26 17-42 22-47 (263)
481 1t9h_A YLOQ, probable GTPase E 96.3 0.0011 3.9E-08 55.4 1.7 25 17-41 171-195 (307)
482 1e69_A Chromosome segregation 96.3 0.0022 7.4E-08 53.9 3.4 25 17-42 23-47 (322)
483 1w1w_A Structural maintenance 96.3 0.0031 1.1E-07 55.1 4.5 28 17-44 24-51 (430)
484 1fx0_B ATP synthase beta chain 96.3 0.0033 1.1E-07 55.8 4.6 38 17-54 163-200 (498)
485 2dyk_A GTP-binding protein; GT 96.3 0.0024 8.2E-08 47.0 3.3 21 21-41 3-23 (161)
486 3hjn_A DTMP kinase, thymidylat 96.3 0.0045 1.5E-07 48.3 5.0 34 21-55 2-35 (197)
487 1z2a_A RAS-related protein RAB 96.3 0.0022 7.6E-08 47.5 3.1 23 20-42 6-28 (168)
488 2lkc_A Translation initiation 96.3 0.003 1E-07 47.3 3.8 25 17-41 6-30 (178)
489 3o8b_A HCV NS3 protease/helica 96.3 0.023 7.9E-07 52.4 10.3 37 17-57 230-266 (666)
490 3gmt_A Adenylate kinase; ssgci 96.3 0.0025 8.7E-08 51.1 3.5 24 20-43 9-32 (230)
491 4hlc_A DTMP kinase, thymidylat 96.3 0.0046 1.6E-07 48.6 4.9 34 20-55 3-36 (205)
492 1nrj_B SR-beta, signal recogni 96.3 0.0032 1.1E-07 49.1 4.0 26 17-42 10-35 (218)
493 2ged_A SR-beta, signal recogni 96.3 0.0033 1.1E-07 47.9 4.0 25 18-42 47-71 (193)
494 1kao_A RAP2A; GTP-binding prot 96.3 0.0026 8.9E-08 46.9 3.2 23 20-42 4-26 (167)
495 1moz_A ARL1, ADP-ribosylation 96.3 0.0014 4.9E-08 49.5 1.8 23 18-40 17-39 (183)
496 2nzj_A GTP-binding protein REM 96.3 0.0025 8.4E-08 47.6 3.1 22 20-41 5-26 (175)
497 1nij_A Hypothetical protein YJ 96.2 0.0017 5.9E-08 54.5 2.3 23 20-42 5-27 (318)
498 2wjg_A FEOB, ferrous iron tran 96.2 0.0028 9.4E-08 48.1 3.3 23 19-41 7-29 (188)
499 1byi_A Dethiobiotin synthase; 96.2 0.0043 1.5E-07 48.8 4.6 35 21-56 3-38 (224)
500 2qe7_A ATP synthase subunit al 96.2 0.057 2E-06 47.9 12.1 37 17-54 160-196 (502)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.1e-18 Score=149.89 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=97.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+++++|||||||||||+||+++|. +.+.+++.++ ..+....+.+.+ ...++.+|
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~----e~~~~f~~v~-------~s~l~sk~vGes--------------e~~vr~lF 234 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAH----HTDCKFIRVS-------GAELVQKYIGEG--------------SRMVRELF 234 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHH----HHTCEEEEEE-------GGGGSCSSTTHH--------------HHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHH----hhCCCceEEE-------hHHhhccccchH--------------HHHHHHHH
Confidence 4778999999999999999997776 4457788885 334444444433 67889999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++++... |.....+......+.+..+++.+..+. ....++|+++||.++......+.
T Consensus 235 ~~Ar--~~aP~IIFiDEiDai~~~-----R~~~~~~~~~~~~~~l~~lL~~lDg~~-~~~~V~vIaATNrpd~LDpAllR 306 (405)
T 4b4t_J 235 VMAR--EHAPSIIFMDEIDSIGST-----RVEGSGGGDSEVQRTMLELLNQLDGFE-TSKNIKIIMATNRLDILDPALLR 306 (405)
T ss_dssp HHHH--HTCSEEEEEESSSCCTTS-----CSCSSSGGGGHHHHHHHHHHHHHHTTT-CCCCEEEEEEESCSSSSCHHHHS
T ss_pred HHHH--HhCCceEeeecchhhccC-----CCCCCCCCcHHHHHHHHHHHHhhhccC-CCCCeEEEeccCChhhCCHhHcC
Confidence 9887 444999999999999984 322222233333344444555554443 34568899999998766554343
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..+|+..++++..
T Consensus 307 pGRfD~~I~i~lP 319 (405)
T 4b4t_J 307 PGRIDRKIEFPPP 319 (405)
T ss_dssp TTSSCCEEECCCC
T ss_pred CCcCceEEEcCCc
Confidence 4589999998864
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.5e-18 Score=146.42 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=94.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++.++|||||||||||+||+++|.. .+.+++.++ ..+++..+.+.+ ...++.+|
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e----~~~~fi~v~-------~s~l~sk~vGes--------------ek~ir~lF 268 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ----TSATFLRIV-------GSELIQKYLGDG--------------PRLCRQIF 268 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH----HTCEEEEEE-------SGGGCCSSSSHH--------------HHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH----hCCCEEEEE-------HHHhhhccCchH--------------HHHHHHHH
Confidence 47799999999999999999987764 456777775 333344444333 66888999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||+++++.. |............+.+..+++.+.... ....++||++||.++......+.
T Consensus 269 ~~Ar--~~aP~IIfiDEiDai~~~-----R~~~~~~~~~~~~~~l~~LL~~lDg~~-~~~~ViVIaATNrpd~LDpALlR 340 (437)
T 4b4t_I 269 KVAG--ENAPSIVFIDEIDAIGTK-----RYDSNSGGEREIQRTMLELLNQLDGFD-DRGDVKVIMATNKIETLDPALIR 340 (437)
T ss_dssp HHHH--HTCSEEEEEEEESSSSCC-----CSCSSCSSCCHHHHHHHHHHHHHHHCC-CSSSEEEEEEESCSTTCCTTSSC
T ss_pred HHHH--hcCCcEEEEehhhhhccc-----CCCCCCCccHHHHHHHHHHHHHhhCcC-CCCCEEEEEeCCChhhcCHHHhc
Confidence 9877 444999999999999984 322222222233344444555554433 34568889999988765444343
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..+|+..++++..
T Consensus 341 pGRfD~~I~v~lP 353 (437)
T 4b4t_I 341 PGRIDRKILFENP 353 (437)
T ss_dssp TTTEEEEECCCCC
T ss_pred CCceeEEEEcCCc
Confidence 4588888888764
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1e-17 Score=147.37 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=95.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++.++|||||||||||+||+++|. +.+.+++.++ .......+.+.. ...++.+|
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~----e~~~~f~~v~-------~s~l~~~~vGes--------------e~~ir~lF 267 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAA----QTNATFLKLA-------APQLVQMYIGEG--------------AKLVRDAF 267 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH----HHTCEEEEEE-------GGGGCSSCSSHH--------------HHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHH----HhCCCEEEEe-------hhhhhhcccchH--------------HHHHHHHH
Confidence 4778999999999999999997776 4456788885 333344444333 66888899
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+.. ..|++|||||+++++.. |.+..........+.+..+++.+..+.. ...++|+++||.++......+.
T Consensus 268 ~~A~~--~aP~IifiDEiDal~~~-----R~~~~~~~~~~~~~~~~~lL~~ldg~~~-~~~ViVIaaTNrp~~LD~AllR 339 (434)
T 4b4t_M 268 ALAKE--KAPTIIFIDELDAIGTK-----RFDSEKSGDREVQRTMLELLNQLDGFSS-DDRVKVLAATNRVDVLDPALLR 339 (434)
T ss_dssp HHHHH--HCSEEEEEECTHHHHCC-----CSSGGGGTTHHHHHHHHHHHHHHTTSCS-SCSSEEEEECSSCCCCCTTTCS
T ss_pred HHHHh--cCCeEEeecchhhhhhc-----cCCCCCCCchHHHHHHHHHHHHhhccCC-CCCEEEEEeCCCchhcCHhHhc
Confidence 87763 34999999999999984 3322222333344444555555544433 3457889999988755444344
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
+.+|+..++++..
T Consensus 340 pGRfD~~I~i~lP 352 (434)
T 4b4t_M 340 SGRLDRKIEFPLP 352 (434)
T ss_dssp TTSEEEEEECCCC
T ss_pred CCceeEEEEeCCc
Confidence 5689999998864
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.5e-17 Score=146.41 Aligned_cols=140 Identities=19% Similarity=0.199 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++.++|||||||||||+||+++|. +.+.++++++ ....+..+.+.+ ...++.+|
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~----e~~~~~~~v~-------~s~l~sk~~Ges--------------e~~ir~~F 267 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA----TIGANFIFSP-------ASGIVDKYIGES--------------ARIIREMF 267 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH----HHTCEEEEEE-------GGGTCCSSSSHH--------------HHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH----HhCCCEEEEe-------hhhhccccchHH--------------HHHHHHHH
Confidence 4789999999999999999998776 4457788885 233334443332 56788888
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||+++++.. |.+..........+.+..+++.+.... ....++||++||.++......+.
T Consensus 268 ~~A~--~~~P~IifiDEiDai~~~-----R~~~~~~~~~~~~~~l~~lL~~lDg~~-~~~~vivI~ATNrp~~LDpAllR 339 (437)
T 4b4t_L 268 AYAK--EHEPCIIFMDEVDAIGGR-----RFSEGTSADREIQRTLMELLTQMDGFD-NLGQTKIIMATNRPDTLDPALLR 339 (437)
T ss_dssp HHHH--HSCSEEEEEECCCSSSCC-----CSSSCCSSTTHHHHHHHHHHHHHHSSS-CTTSSEEEEEESSTTSSCTTTTS
T ss_pred HHHH--hcCCceeeeecccccccc-----cccCCCCcchHHHHHHHHHHHHhhccc-CCCCeEEEEecCCchhhCHHHhC
Confidence 8876 344999999999999984 322222222223333333444443332 23457788889988655444344
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
+.+|+..++++..
T Consensus 340 pGRfD~~I~i~lP 352 (437)
T 4b4t_L 340 PGRLDRKVEIPLP 352 (437)
T ss_dssp TTSEEEEECCCCC
T ss_pred CCccceeeecCCc
Confidence 5578988888764
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.8e-17 Score=143.84 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=96.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+++++|||||||||||+||+++|.. .+.+++.++ ...++..+.+.+ ...++.+|
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e----~~~~fi~vs-------~s~L~sk~vGes--------------ek~ir~lF 295 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR----TDATFIRVI-------GSELVQKYVGEG--------------ARMVRELF 295 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH----HTCEEEEEE-------GGGGCCCSSSHH--------------HHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc----cCCCeEEEE-------hHHhhcccCCHH--------------HHHHHHHH
Confidence 58899999999999999999987764 456788775 333334444333 66888999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||+++++.. |.....+......+.+..+++.+.... ....++||++||.++......+.
T Consensus 296 ~~Ar--~~aP~IIfiDEiDai~~~-----R~~~~~~~~~~~~~~l~~lL~~lDg~~-~~~~ViVIaATNrpd~LDpALlR 367 (467)
T 4b4t_H 296 EMAR--TKKACIIFFDEIDAVGGA-----RFDDGAGGDNEVQRTMLELITQLDGFD-PRGNIKVMFATNRPNTLDPALLR 367 (467)
T ss_dssp HHHH--HTCSEEEEEECCTTTSBC-----CSSSSCGGGGHHHHHHHHHHHHHHSSC-CTTTEEEEEECSCTTSBCHHHHS
T ss_pred HHHH--hcCCceEeeccccccccc-----ccCcCCCccHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCcccCChhhhc
Confidence 9877 344999999999999984 333333333344445555555554332 34568899999998766554333
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..+|+..++++..
T Consensus 368 pGRFD~~I~i~lP 380 (467)
T 4b4t_H 368 PGRIDRKVEFSLP 380 (467)
T ss_dssp TTTCCEEECCCCC
T ss_pred cccccEEEEeCCc
Confidence 4589999998864
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.2e-17 Score=142.23 Aligned_cols=138 Identities=13% Similarity=0.196 Sum_probs=91.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+++++|||||||||||+||+++|.. .+.+++.++ ....+..+.+.. ...++.+|
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~----~~~~~~~v~-------~~~l~~~~~Ge~--------------e~~ir~lF 258 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS----TKAAFIRVN-------GSEFVHKYLGEG--------------PRMVRDVF 258 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH----HTCEEEEEE-------GGGTCCSSCSHH--------------HHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH----hCCCeEEEe-------cchhhccccchh--------------HHHHHHHH
Confidence 47789999999999999999987764 457788885 233333333332 66888999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++++...+..... .......+...+|+..++.+ . ....++||++||.++......+.
T Consensus 259 ~~A~--~~aP~IifiDEiD~i~~~R~~~~~--~~~~~~~r~l~~lL~~ldg~---~-~~~~v~vI~aTN~~~~LD~AllR 330 (428)
T 4b4t_K 259 RLAR--ENAPSIIFIDEVDSIATKRFDAQT--GSDREVQRILIELLTQMDGF---D-QSTNVKVIMATNRADTLDPALLR 330 (428)
T ss_dssp HHHH--HTCSEEEEEECTHHHHCSCSSSCS--CCCCHHHHHHHHHHHHHHHS---C-SSCSEEEEEEESCSSSCCHHHHS
T ss_pred HHHH--HcCCCeeechhhhhhhccccCCCC--CCChHHHHHHHHHHHHhhCC---C-CCCCEEEEEecCChhhcChhhhc
Confidence 9877 445999999999999984321111 11112223444444444443 2 33458889999988765544333
Q ss_pred HHhhccceEEE
Q 041690 177 KRWISSIFTVK 187 (233)
Q Consensus 177 ~~~~~~~~~i~ 187 (233)
..+|+..++++
T Consensus 331 pGRfd~~I~~p 341 (428)
T 4b4t_K 331 PGRLDRKIEFP 341 (428)
T ss_dssp SSSEEEEEECC
T ss_pred CCcceEEEEcC
Confidence 45889888885
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.63 E-value=6.8e-16 Score=144.75 Aligned_cols=137 Identities=17% Similarity=0.197 Sum_probs=97.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++.++|||||||||||+||+++|. +.+..+++++ ..+....+.+.. ...++.+|
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~----elg~~~~~v~-------~~~l~sk~~ges--------------e~~lr~lF 290 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVAN----ETGAFFFLIN-------GPEIMSKLAGES--------------ESNLRKAF 290 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHT----TTTCEEEEEE-------HHHHHSSCTTHH--------------HHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH----HhCCeEEEEE-------hHHhhcccchHH--------------HHHHHHHH
Confidence 4778999999999999999997665 5577888885 233333333332 66888999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||+++++. .+++...+...++..+|+.+++.+ .....++||+++|.++........
T Consensus 291 ~~A~--~~~PsIIfIDEiDal~~-----~r~~~~~~~~~riv~~LL~~mdg~----~~~~~V~VIaaTN~~d~LD~ALrR 359 (806)
T 3cf2_A 291 EEAE--KNAPAIIFIDELDAIAP-----KREKTHGEVERRIVSQLLTLMDGL----KQRAHVIVMAATNRPNSIDPALRR 359 (806)
T ss_dssp HHHT--TSCSEEEEEESGGGTCC-----TTTTCCCTTHHHHHHHHHTHHHHC----CGGGCEEEEEECSSTTTSCTTTTS
T ss_pred HHHH--HcCCeEEEEehhccccc-----ccCCCCChHHHHHHHHHHHHHhcc----cccCCEEEEEecCChhhcCHHHhC
Confidence 9876 44599999999999998 344444555666777777776665 223458889999887654433222
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
.++|+..++++..
T Consensus 360 ~GRFd~~I~i~~P 372 (806)
T 3cf2_A 360 FGRFDREVDIGIP 372 (806)
T ss_dssp TTSSCEEEECCCC
T ss_pred CcccceEEecCCC
Confidence 3478888888753
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.62 E-value=7.5e-16 Score=144.43 Aligned_cols=140 Identities=14% Similarity=0.230 Sum_probs=92.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+...+|+|||||||||.+|+++|. +.+.+++.+ ..++.+..+.+.+ ...++++|
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~----e~~~~f~~v-------~~~~l~s~~vGes--------------e~~vr~lF 563 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIAN----ECQANFISI-------KGPELLTMWFGES--------------EANVREIF 563 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHH----TTTCEEEEC-------CHHHHHTTTCSSC--------------HHHHHHHH
T ss_pred CCCceEEEecCCCCCchHHHHHHHH----HhCCceEEe-------ccchhhccccchH--------------HHHHHHHH
Confidence 4677899999999999999997776 555667766 4455556665554 77899999
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..++ ...|++|||||+++++..+... .+.......+++++|+..++.+ .....|+|+++||.++......+.
T Consensus 564 ~~Ar--~~~P~IifiDEiDsl~~~R~~~--~~~~~~~~~rv~~~lL~~mdg~----~~~~~V~vi~aTN~p~~lD~AllR 635 (806)
T 3cf2_A 564 DKAR--QAAPCVLFFDELDSIAKARGGN--IGDGGGAADRVINQILTEMDGM----STKKNVFIIGATNRPDIIDPAILR 635 (806)
T ss_dssp HHHH--TTCSEEEECSCGGGCC----------------CHHHHHHHHHHHSS----CSSSSEEEECC-CCSSSSCHHHHS
T ss_pred HHHH--HcCCceeechhhhHHhhccCCC--CCCCchHHHHHHHHHHHHHhCC----CCCCCEEEEEeCCCchhCCHhHcC
Confidence 9887 4459999999999999843110 0112223345667777777665 334568999999998765544333
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..+|+..++++..
T Consensus 636 pgRfd~~i~v~lP 648 (806)
T 3cf2_A 636 PGRLDQLIYIPLP 648 (806)
T ss_dssp TTTSCCEEEC---
T ss_pred CCcceEEEEECCc
Confidence 3488999998864
No 9
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=99.61 E-value=9.7e-15 Score=122.84 Aligned_cols=164 Identities=13% Similarity=0.100 Sum_probs=91.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHH-H
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQ-SNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEI-K 93 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l-~ 93 (233)
.++| .++|+||||+||||||+|++.+++.. .|.+++||++|+.+... +.. .++.. .+++.+......+.+ .
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~--ra~-~lGvd---~d~llv~~~~~~E~~~l 98 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA--YLR-SMGVD---PERVIHTPVQSLEQLRI 98 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH--HHH-HTTCC---GGGEEEEECSBHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH--HHH-HhCCC---HHHeEEEcCCCHHHHHH
Confidence 3577 89999999999999999999988843 27899999999755432 111 11111 125555444455555 4
Q ss_pred HHHHHhc-ccCCCCcEEEEeCCCccccc-cccccccCCcchhhHHHHHHHHH-HHHHHHHhhhcCCcEEEEeecCCCCC-
Q 041690 94 KYFAAFH-QHDKIPTAVVVDDFGDLFDD-RTCQERYTNPRGRDLAMVRTLAL-CYNAITHANKKSPCKLLLSDTHLGNS- 169 (233)
Q Consensus 94 ~~~~~~~-~~~~~p~iIvIDei~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~l~~~~~~vlvi~~~~~~~~- 169 (233)
.+.+.+. .....|++|||||++++++. ...+..+ ..+......++.+.. ++.+...+++.+.+++++.+......
T Consensus 99 ~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~g-d~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k~G~~ 177 (333)
T 3io5_A 99 DMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALN-EKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYETQEM 177 (333)
T ss_dssp HHHHHHHTCCTTCCEEEEEECSTTCBCC---------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC------
T ss_pred HHHHHHHHhhccCceEEEEecccccccchhccCccc-cccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeeecCcc
Confidence 4444331 12445999999999999853 1111111 100000011122222 33444456677888888776643111
Q ss_pred -----chhHHHHHHhhccceEEEe
Q 041690 170 -----TRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 170 -----~~~~~~~~~~~~~~~~i~~ 188 (233)
..+..++ +|....+.+..
T Consensus 178 fg~p~~~GG~~l-~~ss~Rl~lrk 200 (333)
T 3io5_A 178 FSKTVMGGGTGP-MYSADTVFIIG 200 (333)
T ss_dssp ---------CCG-GGGSSEEEEEE
T ss_pred cCCCCCCCccee-eeeeEEEEEEe
Confidence 2345567 88888888765
No 10
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.58 E-value=5.5e-14 Score=120.92 Aligned_cols=161 Identities=12% Similarity=0.109 Sum_probs=93.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
++|++++|+||||+|||||+++++..++ ..|.+++|+++|..+... ....++.. .+++.+......+.+..+.
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~-~~g~~vlyi~~E~~~~~~---~a~~lG~~---~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQ-AAGGIAAFIDAEHALDPE---YAKKLGVD---TDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESSCCCCHH---HHHHTTCC---GGGCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEECCCCcCHH---HHHHcCCC---HHHeEEecCCCHHHHHHHH
Confidence 4899999999999999999999998888 678899999988543221 11111110 1234433333344444443
Q ss_pred HHhcccCCCCcEEEEeCCCcccccc-ccccccCCcc-hhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCC--------
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDR-TCQERYTNPR-GRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHL-------- 166 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~-~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~-------- 166 (233)
..+.. ...|++|||||+++++... ..+..++... .+...+.+. +..+...+++.+.+++++++...
T Consensus 132 ~~l~~-~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~---l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~ 207 (349)
T 2zr9_A 132 DMLVR-SGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQA---LRKMTGALNNSGTTAIFINELREKIGVMFGS 207 (349)
T ss_dssp HHHHT-TTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHH---HHHHHHHHHHHTCEEEEEEECC---------
T ss_pred HHHHh-cCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHH---HHHHHHHHHHhCCEEEEEeccccccCcccCC
Confidence 32221 3349999999999998521 0000000100 111111111 33333344566888888877653
Q ss_pred CCCchhHHHHHHhhccceEEEe
Q 041690 167 GNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+..|.+...+.++.+.++.+..
T Consensus 208 p~~~~gg~~l~~~ad~~l~lrr 229 (349)
T 2zr9_A 208 PETTTGGKALKFYASVRLDVRR 229 (349)
T ss_dssp --CCSSHHHHHHHCSEEEEEEE
T ss_pred CcccCCchHhhhccceEEEEEE
Confidence 1234455689999999888875
No 11
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.57 E-value=1.2e-13 Score=118.73 Aligned_cols=161 Identities=14% Similarity=0.151 Sum_probs=97.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
++|++++|+||||||||||+++++..++ ..+.+|+|+++|..+... +... ++. ..+++.+......+.+...+
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~-~~gg~VlyId~E~s~~~~--ra~r-lgv---~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQ-KMGGVAAFIDAEHALDPV--YAKN-LGV---DLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESSCCCCHH--HHHH-HTC---CGGGCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEecccccchH--HHHH-cCC---chhhhhhhhccCHHHHHHHH
Confidence 5899999999999999999999999888 678899999988644321 1111 111 01234443333344444443
Q ss_pred HHhcccCCCCcEEEEeCCCcccc-ccccccccCCcchhhHHHHHHHHHHHHHHHHh-hhcCCcEEEEeecCC--------
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFD-DRTCQERYTNPRGRDLAMVRTLALCYNAITHA-NKKSPCKLLLSDTHL-------- 166 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l-~~~~~~vlvi~~~~~-------- 166 (233)
..+.. ...+++||||++.++++ ....+.. +..+ .....+.+..++..+..+ ++.+.+++++.+...
T Consensus 132 ~~l~~-~~~~dlvVIDSi~~l~~~~el~g~~-G~~q--~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~ 207 (356)
T 3hr8_A 132 DELVR-SGVVDLIVVDSVAALVPRAEIEGAM-GDMQ--VGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGS 207 (356)
T ss_dssp HHHHH-TSCCSEEEEECTTTCCCHHHHTTCC-CSSC--SSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCS
T ss_pred HHHhh-hcCCCeEEehHhhhhcChhhhcccc-hhhH--HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCC
Confidence 33221 23489999999999996 3211111 1110 001123333444444444 345667777766521
Q ss_pred CCCchhHHHHHHhhccceEEEe
Q 041690 167 GNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+..+.+..+++|+.+.++.+..
T Consensus 208 p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 208 PETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp CSSCTHHHHHHHHCSEEEEEEE
T ss_pred cccCCCcchhhhhCcEEEEEEe
Confidence 2236678899999999999986
No 12
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=99.55 E-value=1.2e-13 Score=117.75 Aligned_cols=165 Identities=13% Similarity=0.095 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC-----CCeEEEEecCCccccccccccc---ccC-CchhhhcceEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS-----NANVVFMCNRSRLQSKRPYLSQ---SID-PSSHVFKLIQMKYVE 87 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~-----g~~v~yi~~e~~l~~~~~~~~~---~~~-~~~~~~~~i~~~~~~ 87 (233)
++|..++|+||||+|||+|+.+++..++... +.+++|+++|..+. ++.+.+ .++ +.+.+.+++.+....
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~--~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFR--WERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC--HHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCC--HHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 5899999999999999999999998876221 67999999886432 111111 111 223334566554333
Q ss_pred CHHHHHHHHHHhcc--cC-CCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHH-hhhcCCcEEEEee
Q 041690 88 DDEEIKKYFAAFHQ--HD-KIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITH-ANKKSPCKLLLSD 163 (233)
Q Consensus 88 ~~~~l~~~~~~~~~--~~-~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-l~~~~~~vlvi~~ 163 (233)
..+.+..++..+.. .+ ..+++||||++++++.....+ + +....+ ...+..++..+.. +++.+.+++++.+
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~-~-g~~~~r----~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG-R-ENLAVR----QQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT-T-TSHHHH----HHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC-c-ccHHHH----HHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 33322222222111 02 348999999999998631100 0 000111 1122223333333 3345777777766
Q ss_pred cCCC--------CCchhHHHHHHhhccceEEEec
Q 041690 164 THLG--------NSTRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 164 ~~~~--------~~~~~~~~~~~~~~~~~~i~~~ 189 (233)
.+.. ..|.+...+.++.+.++.+...
T Consensus 257 ~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r~ 290 (324)
T 2z43_A 257 VMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKKS 290 (324)
T ss_dssp C------------------------CEEEEEEEC
T ss_pred eeecCCCcCCCCCCCCchHHHHhhCcEEEEEEEc
Confidence 5432 1244556789999999999875
No 13
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.55 E-value=1.5e-13 Score=109.74 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=97.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccccc---ccC-CchhhhcceEEEEecCHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQ---SID-PSSHVFKLIQMKYVEDDEE 91 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~---~~~-~~~~~~~~i~~~~~~~~~~ 91 (233)
.++|..++|+||||+|||||+++++. ..+.+++|++.+..+. ...+.. ..+ ..+...+++.+........
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~----~~~~~v~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL----LSGKKVAYVDTEGGFS--PERLVQMAETRGLNPEEALSRFILFTPSDFKE 90 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH----HHCSEEEEEESSCCCC--HHHHHHHHHTTTCCHHHHHHHEEEECCTTTSH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH----HcCCcEEEEECCCCCC--HHHHHHHHHhcCCChHHHhhcEEEEecCCHHH
Confidence 46899999999999999999999987 3478999999875221 111111 111 1122334444433333323
Q ss_pred HHHHHHHhccc-CCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhh-hcCCcEEEEeecCCC--
Q 041690 92 IKKYFAAFHQH-DKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHAN-KKSPCKLLLSDTHLG-- 167 (233)
Q Consensus 92 l~~~~~~~~~~-~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~-~~~~~vlvi~~~~~~-- 167 (233)
+...+..+... ...|++|||||++++++.. .. ...+. ..+..+++.+..+. +.+.+++++++.+..
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~---~~---~~~~~----~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~ 160 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSITAHYRAE---EN---RSGLI----AELSRQLQVLLWIARKHNIPVIVINQVHFDSR 160 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCCCCTTGG---GG---SSTTH----HHHHHHHHHHHHHHHHHTCCEEEEECSSSSCT
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc---Cc---hHHHH----HHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCC
Confidence 22233322111 1149999999999998741 00 01111 12222334444433 447788888776542
Q ss_pred ---CCchhHHHHHHhhccceEEEec---CCccEEEeeccCc
Q 041690 168 ---NSTRLLYIYKRWISSIFTVKGD---GPGSFLLRNKNYS 202 (233)
Q Consensus 168 ---~~~~~~~~~~~~~~~~~~i~~~---~~~~~~l~~~~~~ 202 (233)
..|.+...++++.+.++.+... +.+...+.+.+..
T Consensus 161 ~~~~~p~~~~~~~~~~d~vi~l~~~~~~~~r~l~v~K~r~~ 201 (220)
T 2cvh_A 161 TEMTKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFR 201 (220)
T ss_dssp TSSCCSCCCHHHHHTSSEEEEEEECSSTTEEEEEEEECSSS
T ss_pred CCccccCCCcceeecCcEEEEEEEecCCCEEEEEEEeCCCC
Confidence 2243444788999999999875 2233555555543
No 14
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.54 E-value=2.1e-13 Score=119.18 Aligned_cols=165 Identities=13% Similarity=0.116 Sum_probs=96.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEecCCcccccc-cccccccC-CchhhhcceEEEEecCH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCNRSRLQSKR-PYLSQSID-PSSHVFKLIQMKYVEDD 89 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~e~~l~~~~-~~~~~~~~-~~~~~~~~i~~~~~~~~ 89 (233)
++|.+++|+||||||||||+++++...... .+.+++|++++..+.... ..+.+.++ ..+.+++++.+......
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 589999999999999999999998766532 357899999886432211 11111122 23445556666443333
Q ss_pred HHHHHH----HHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhh-hcCCcEEEEeec
Q 041690 90 EEIKKY----FAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHAN-KKSPCKLLLSDT 164 (233)
Q Consensus 90 ~~l~~~----~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~-~~~~~vlvi~~~ 164 (233)
...... ...+. ...|++|||||++++++....+ . +.....++.+..++..+..+. +.+.++|++++.
T Consensus 256 ~~~~~~l~~~~~~l~--~~~~~llVIDs~t~~~~~~~sg-----~-g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 256 DHQLRLLDAAAQMMS--ESRFSLIVVDSVMALYRTDFSG-----R-GELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHHH--HSCEEEEEEETGGGGCC------------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHH--hcCCceEEecchhhhCchhhcC-----c-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 322222 22222 2349999999999999842211 0 011112233344566666554 448888888887
Q ss_pred CCC-----------CCchhHHHHHHhhccceEEEec
Q 041690 165 HLG-----------NSTRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 165 ~~~-----------~~~~~~~~~~~~~~~~~~i~~~ 189 (233)
... ..|.+...+.|+.+.++.+...
T Consensus 328 ~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 328 VAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp --------------------CHHHHHCSEEEEEEEC
T ss_pred cccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 311 1233445899999999999974
No 15
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.53 E-value=1.1e-13 Score=117.74 Aligned_cols=137 Identities=17% Similarity=0.193 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..++|+||||||||+||+.++.... +..+++++... ....+.+.. ...++.+|
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~~i~~~~-------l~~~~~g~~--------------~~~~~~lf 98 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSD-------LVSKWLGES--------------EKLVKNLF 98 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT---SCEEEEEECCS-------SCCSSCCSC--------------HHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcC---CCcEEEEEhHH-------HHhhhhhHH--------------HHHHHHHH
Confidence 4668999999999999999998887542 56777775332 222222222 56777788
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++++... +.........++.++++..++ .+......++++++++.++.... .+
T Consensus 99 ~~a~--~~~~~vl~iDEid~l~~~-----~~~~~~~~~~~~~~~ll~~ld---~~~~~~~~v~vI~atn~~~~ld~--al 166 (322)
T 1xwi_A 99 QLAR--ENKPSIIFIDEIDSLCGS-----RSENESEAARRIKTEFLVQMQ---GVGVDNDGILVLGATNIPWVLDS--AI 166 (322)
T ss_dssp HHHH--HTSSEEEEEETTTGGGCC-----SSSCCTTHHHHHHHHHHHHHH---CSSSCCTTEEEEEEESCTTTSCH--HH
T ss_pred HHHH--hcCCcEEEeecHHHhccc-----cccccchHHHHHHHHHHHHHh---cccccCCCEEEEEecCCcccCCH--HH
Confidence 7665 334999999999999873 222222233344444433333 22223456888888887754432 44
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
.++++..+.++..
T Consensus 167 ~rRf~~~i~i~~P 179 (322)
T 1xwi_A 167 RRRFEKRIYIPLP 179 (322)
T ss_dssp HHTCCEEEECCCC
T ss_pred HhhcCeEEEeCCc
Confidence 4577777777653
No 16
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.53 E-value=1.9e-13 Score=117.82 Aligned_cols=185 Identities=12% Similarity=0.147 Sum_probs=102.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
++|.+++|+||||+|||+||.+++..++ ..|.+|+|+++|..+.... . ..++.. .+++.+......+.+.+.+
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~-~~g~~vlyid~E~s~~~~~--a-~~~g~~---~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIY--A-RKLGVD---IDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEESSCCCCHHH--H-HHTTCC---GGGCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCCccHHH--H-HHcCCC---hhheeeeCCCCHHHHHHHH
Confidence 5899999999999999999999999888 6688999999886443211 1 111111 1244433333344444444
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCc-c-hhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCC-------
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNP-R-GRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLG------- 167 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~------- 167 (233)
..+.. ...+++||||+++++........+.++. . .+...+.+. +..+...+++.+.++|++.+.+..
T Consensus 134 ~~l~~-~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~---l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~ 209 (356)
T 1u94_A 134 DALAR-SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA---MRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 209 (356)
T ss_dssp HHHHH-HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHH---HHHHHHHHHHHTCEEEEEEC-----------
T ss_pred HHHHh-ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHH---HHHHHHHHHHhCCEEEEEeccccccCcccCC
Confidence 43321 2348999999999998521000000010 0 011111111 223333445667777777665432
Q ss_pred -CCchhHHHHHHhhccceEEEec-----C------CccEEEeeccCcccccccccceeeeEE
Q 041690 168 -NSTRLLYIYKRWISSIFTVKGD-----G------PGSFLLRNKNYSRSCGLGKTRIAKYSI 217 (233)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~i~~~-----~------~~~~~l~~~~~~~~~~~~~~~~~~~~~ 217 (233)
..|.+...+.++.+.++.+... + ...+.+.++...+ ..+.+.|.|
T Consensus 210 ~~~~~gG~~l~~~advrl~l~r~~~~k~g~~~~g~~~~~~i~K~r~~p-----~~~~~~f~i 266 (356)
T 1u94_A 210 PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAA-----PFKQAEFQI 266 (356)
T ss_dssp ---CTTCSHHHHHCSEEEEEEEEEEEESSSSEEEEEEEEEEEEESSBC-----SCCEEEEEE
T ss_pred CcccCCCcceeeeccEEEEEEEeeeeccCccccCcEEEEEECCCccCC-----CCCcEEEEE
Confidence 2233445789999988887653 1 2346666655543 224456665
No 17
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=99.52 E-value=3.5e-13 Score=114.51 Aligned_cols=165 Identities=13% Similarity=0.122 Sum_probs=94.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhh-----------cCC----CeEEEEecCCcccccccccccc---cC-Cchhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCAS-----------QSN----ANVVFMCNRSRLQSKRPYLSQS---ID-PSSHV 77 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~-----------~~g----~~v~yi~~e~~l~~~~~~~~~~---~~-~~~~~ 77 (233)
++|+.++|+||||+|||+||.+++.+++. ..| .+|+|+++|..+. ++++.+. ++ +.+..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~--~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR--PERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCC--HHHHHHHHHHHTCCHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 58999999999999999999999987532 224 7999999986431 1211111 11 22333
Q ss_pred hcceEEEEecCHHHHHHHHHHhcc--cC-CCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHH-hhh
Q 041690 78 FKLIQMKYVEDDEEIKKYFAAFHQ--HD-KIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITH-ANK 153 (233)
Q Consensus 78 ~~~i~~~~~~~~~~l~~~~~~~~~--~~-~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-l~~ 153 (233)
.+++.+......+.+..++..+.. .+ ..+++||||++++++.....+ + +....+ ...+..++..+.. +++
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~-~-~~~~~r----~~~~~~~~~~L~~la~~ 247 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG-R-GKLAER----QQKLGRHMATLNKLADL 247 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCC-T-TSHHHH----HHHHHHHHHHHHHHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcC-C-ccHHHH----HHHHHHHHHHHHHHHHH
Confidence 456655444444432222222211 12 348999999999998631100 0 000111 1122333333433 345
Q ss_pred cCCcEEEEeecCCC--------CCchhHHHHHHhhccceEEEec
Q 041690 154 KSPCKLLLSDTHLG--------NSTRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 154 ~~~~vlvi~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~ 189 (233)
.+.+++++.+.+.. ..|.+...+.++.+.++.+...
T Consensus 248 ~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 248 FNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp TTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEEC
T ss_pred hCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEec
Confidence 56666666554422 1355666899999999999875
No 18
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.52 E-value=1.1e-12 Score=113.47 Aligned_cols=162 Identities=15% Similarity=0.163 Sum_probs=91.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
++|.+++|+||||+|||+||.+++..++ ..|.+|+|+++|..+.... ...++.. .+++.+......+.+...+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~-~~g~~vlyi~~E~s~~~~~---a~~~g~d---~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQ-KAGGTCAFIDAEHALDPVY---ARALGVN---TDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESSCCCCHHH---HHHTTCC---GGGCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHH-HCCCeEEEEECCCChhHHH---HHHcCCC---HHHceeecCCcHHHHHHHH
Confidence 5899999999999999999999999888 6688999999885432211 1111110 1244443333444444444
Q ss_pred HHhcccCCCCcEEEEeCCCccccc-cccccccCCcchhhHHHHHHHHHHHHHHH-HhhhcCCcEEEEeecCC--------
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDD-RTCQERYTNPRGRDLAMVRTLALCYNAIT-HANKKSPCKLLLSDTHL-------- 166 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~l~~~~~~vlvi~~~~~-------- 166 (233)
..+.. ...+++||||++++++.. ...+..++...... .+.+...+..+. .+++.+.++|++.+.+.
T Consensus 145 ~~l~~-~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~---~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~ 220 (366)
T 1xp8_A 145 ELLVR-SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQ---ARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGN 220 (366)
T ss_dssp HHHHT-TTCCSEEEEECTTTCCCSTTC--------CCHH---HHHHHHHHHHHHHHHTTTCCEEEEEEEC----------
T ss_pred HHHHh-cCCCCEEEEeChHHhccccccccccccchhhHH---HHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCC
Confidence 43321 234899999999999852 11000000000001 111222222222 34455777777666542
Q ss_pred CCCchhHHHHHHhhccceEEEec
Q 041690 167 GNSTRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~ 189 (233)
+..|.+...+.++.+.++.+...
T Consensus 221 p~~~~gg~al~~~a~~rl~L~r~ 243 (366)
T 1xp8_A 221 PETTTGGRALKFYASVRLDVRKI 243 (366)
T ss_dssp -----CHHHHHHHCSEEEEEEEE
T ss_pred ccccCCcchhhheeeEEEEEEec
Confidence 12344566789999999998864
No 19
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=99.50 E-value=3e-13 Score=116.05 Aligned_cols=189 Identities=13% Similarity=0.116 Sum_probs=101.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEecCCccccccccccc---ccC-CchhhhcceEEEEe
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCNRSRLQSKRPYLSQ---SID-PSSHVFKLIQMKYV 86 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~e~~l~~~~~~~~~---~~~-~~~~~~~~i~~~~~ 86 (233)
.++|.+++|+||||+|||+||++++..++.. .+.+++|+++|..+. +..+.+ .++ +.+.+++++.+...
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~--~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFR--PDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCC--HHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCC--HHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 3689999999999999999999999886532 478999999986432 111111 111 22334456655333
Q ss_pred cCHHHHHHHH----HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHh-hhcCCcEEEE
Q 041690 87 EDDEEIKKYF----AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHA-NKKSPCKLLL 161 (233)
Q Consensus 87 ~~~~~l~~~~----~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l-~~~~~~vlvi 161 (233)
...+.+..++ ..+......+++||||++++++.....+ ++ ....+ ...+..++..+..+ ++.+.+++++
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~-~g-~~~~r----~~~l~~~l~~L~~la~~~~~~Vi~~ 270 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG-RG-ELAER----QQKLAQMLSRLQKISEEYNVAVFVT 270 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG-GG-CHHHH----HHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc-cc-cHHHH----HHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 2222222222 2222111448999999999998632110 00 00111 11223333333333 3456777766
Q ss_pred eecCCCC-----------CchhHHHHHHhhccceEEEecC--CccEEEeeccCcccccccccceeeeEEe
Q 041690 162 SDTHLGN-----------STRLLYIYKRWISSIFTVKGDG--PGSFLLRNKNYSRSCGLGKTRIAKYSIA 218 (233)
Q Consensus 162 ~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 218 (233)
.+.+... .|.+...+.++.+.++.+.... .+...+.+..+.+ ...+.|.|.
T Consensus 271 nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r~~~~~r~~~v~K~r~~p------~~~~~f~I~ 334 (343)
T 1v5w_A 271 NQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMP------ENEATFAIT 334 (343)
T ss_dssp ECC-------------------CCTTTTSSSEEEEEEESSTTEEEEEEEECTTCC------SSCEEEEEE
T ss_pred eeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEEcCCCEEEEEEEECCCCC------CeeEEEEEe
Confidence 6654321 1223335888999999998752 2234444444332 234567765
No 20
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.50 E-value=4.2e-13 Score=115.46 Aligned_cols=178 Identities=12% Similarity=0.074 Sum_probs=96.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhh--cC---CCeEEEEecCCccc-ccccccccccC-CchhhhcceEEEEecCH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCAS--QS---NANVVFMCNRSRLQ-SKRPYLSQSID-PSSHVFKLIQMKYVEDD 89 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~--~~---g~~v~yi~~e~~l~-~~~~~~~~~~~-~~~~~~~~i~~~~~~~~ 89 (233)
++|++++|+||||||||||+++++...+. .. +++|+|+++++.+. .....+.+..+ ....+.+++.+......
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 69999999999999999999999987741 12 46889999886431 11111222222 23355667766432222
Q ss_pred HHHHHHHHHhccc--C-----CCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhh-hcCCcEEEE
Q 041690 90 EEIKKYFAAFHQH--D-----KIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHAN-KKSPCKLLL 161 (233)
Q Consensus 90 ~~l~~~~~~~~~~--~-----~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~-~~~~~vlvi 161 (233)
.....++..+... . ..|++|||||+++.++....+ .... ......+..++..+..+. +.+.+++++
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~-----~~~~-~~r~~~~~~~l~~L~~la~~~~~tvii~ 282 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIG-----RGAL-AERQQKLAKHLADLHRLANLYDIAVFVT 282 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCS-----TTTH-HHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcc-----cccH-HHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 2222222222110 1 359999999999999742100 0000 011112233444444443 346777777
Q ss_pred eecCCC-C-------CchhHHHHHHhhccceEEEecCCccEEEeeccC
Q 041690 162 SDTHLG-N-------STRLLYIYKRWISSIFTVKGDGPGSFLLRNKNY 201 (233)
Q Consensus 162 ~~~~~~-~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~ 201 (233)
++.... + .|.+..++.++.+.++.+.... +..++.+...
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~l~~~~-~~~Ri~k~~k 329 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGK-GGKRIARLID 329 (349)
T ss_dssp EECC---------------CCCCCTTCSEEEEEEECT-TSEEEEEESC
T ss_pred cccccccccccCCccccCCcceEeecCcEEEEEEEcC-CCeEEEEEEe
Confidence 665421 1 1233446677788888888643 2344444443
No 21
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.49 E-value=8.8e-13 Score=106.86 Aligned_cols=166 Identities=11% Similarity=0.095 Sum_probs=85.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEecCCccccc--ccccccccCCchhhhcceEEEEecC
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCNRSRLQSK--RPYLSQSIDPSSHVFKLIQMKYVED 88 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~e~~l~~~--~~~~~~~~~~~~~~~~~i~~~~~~~ 88 (233)
.++|..++|+||||+|||||+++++...+.. .+.+++|++++..+... ........-..+.+.+++.+.....
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 3589999999999999999999999865422 26789999987532111 0111111112233445655533333
Q ss_pred HHHHHHH----HHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHH-hhhcCCcEEEEee
Q 041690 89 DEEIKKY----FAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITH-ANKKSPCKLLLSD 163 (233)
Q Consensus 89 ~~~l~~~----~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-l~~~~~~vlvi~~ 163 (233)
....... ...+. ...|++|||||++++++...++. +....+. +.+..++..+.. +++.+.+++++++
T Consensus 101 ~~~~~~~~~~~~~~~~--~~~~~lliiD~~~~~~~~~~~~~--~~~~~r~----~~~~~~~~~l~~~~~~~~~tvi~~~h 172 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMV--ESRYALLIVDSATALYRTDYSGR--GELSARQ----MHLARFLRMLLRLADEFGVAVVITNQ 172 (243)
T ss_dssp HHHHHHHHHHHHHHHH--HSCEEEEEEETSSGGGC---------CHHHHH----HHHHHHHHHHHHHHHHHCCEEEEEC-
T ss_pred HHHHHHHHHHHHHHHh--cCCceEEEEeCchHHHHHHhcCC--ccHHHHH----HHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 3332222 22222 23499999999999987421100 0001111 112223333333 3345788888776
Q ss_pred cCCCC-----------CchhHHHHHHhhccceEEEec
Q 041690 164 THLGN-----------STRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 164 ~~~~~-----------~~~~~~~~~~~~~~~~~i~~~ 189 (233)
..... .|.+...+++.++.++.+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 173 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------------------------CCTTCEEEEEEEC
T ss_pred eeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 54321 123333577789999999864
No 22
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.46 E-value=1.9e-13 Score=116.17 Aligned_cols=135 Identities=19% Similarity=0.222 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..++|+||||||||++|+.++... +.++++++.. .....+.+.. ...++.+|
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~----~~~~~~v~~~-------~l~~~~~g~~--------------~~~~~~~f 103 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSSS-------DLVSKWMGES--------------EKLVKQLF 103 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH----TCEEEEEEHH-------HHHTTTGGGH--------------HHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH----CCCEEEEchH-------HHhhcccchH--------------HHHHHHHH
Confidence 356789999999999999999887643 5678887522 2222222111 45677777
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++.+.... .........+++..++.. +..+......+++|++++.++.... .+
T Consensus 104 ~~a~--~~~~~vl~iDEid~l~~~~-----~~~~~~~~~~~~~~ll~~---l~~~~~~~~~v~vi~atn~~~~ld~--al 171 (322)
T 3eie_A 104 AMAR--ENKPSIIFIDQVDALTGTR-----GEGESEASRRIKTELLVQ---MNGVGNDSQGVLVLGATNIPWQLDS--AI 171 (322)
T ss_dssp HHHH--HTSSEEEEEECGGGGSCC-----------CCTHHHHHHHHHH---HGGGGTSCCCEEEEEEESCGGGSCH--HH
T ss_pred HHHH--hcCCeEEEechhhhhhccC-----CCCcchHHHHHHHHHHHH---hccccccCCceEEEEecCChhhCCH--HH
Confidence 7665 3348999999999998742 112222233344444333 3333334556888888887654322 34
Q ss_pred HHhhccceEEEe
Q 041690 177 KRWISSIFTVKG 188 (233)
Q Consensus 177 ~~~~~~~~~i~~ 188 (233)
.++++..++++.
T Consensus 172 ~~Rf~~~i~~~~ 183 (322)
T 3eie_A 172 RRRFERRIYIPL 183 (322)
T ss_dssp HHHCCEEEECCC
T ss_pred HcccCeEEEeCC
Confidence 457777777765
No 23
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.46 E-value=1.2e-12 Score=106.23 Aligned_cols=156 Identities=18% Similarity=0.152 Sum_probs=85.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccc-cccCCchhh-hcceEEEE--------
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLS-QSIDPSSHV-FKLIQMKY-------- 85 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~-~~~~~~~~~-~~~i~~~~-------- 85 (233)
.++|+.++|+||||+|||||+.+++...+ ..+.+++|++++........+.. .+....... ..++.+..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~-~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 98 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGK 98 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhccc
Confidence 36899999999999999999999998888 66889999998742211111111 111111000 01222211
Q ss_pred -----------ecCHHHHHHHH-HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhh
Q 041690 86 -----------VEDDEEIKKYF-AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANK 153 (233)
Q Consensus 86 -----------~~~~~~l~~~~-~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 153 (233)
......+...+ ..+. ...|++|+||+++.+... +. ...+ +. +..+.+.+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~vviD~~~~l~~~--------~~--~~~~--~~---l~~l~~~~~~ 161 (247)
T 2dr3_A 99 SKEYEKYIVHDLTDIREFIEVLRQAIR--DINAKRVVVDSVTTLYIN--------KP--AMAR--SI---ILQLKRVLAG 161 (247)
T ss_dssp --CCCSCBCSCCSSHHHHHHHHHHHHH--HHTCCEEEEETSGGGTTT--------CG--GGHH--HH---HHHHHHHHHH
T ss_pred ccccccccccCccCHHHHHHHHHHHHH--HhCCCEEEECCchHhhcC--------CH--HHHH--HH---HHHHHHHHHH
Confidence 01111222222 2222 123899999999998741 11 1111 11 2333344456
Q ss_pred cCCcEEEEeecCCCCCchhHHHHHHhhccceEEEec
Q 041690 154 KSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKGD 189 (233)
Q Consensus 154 ~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 189 (233)
.+.+++++++.+..........+++++|.++.+...
T Consensus 162 ~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~~ 197 (247)
T 2dr3_A 162 TGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDLD 197 (247)
T ss_dssp TTCEEEEEEECC----CCC-CCHHHHSSEEEEEEEE
T ss_pred CCCeEEEEecCCCCcccccccccceeEEEEEEEEEE
Confidence 688888888776532110011367888999998864
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.44 E-value=7.2e-13 Score=110.23 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..++|+||||||||++++.++.. .+.++++++... ......+.. ...+..++
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~----~~~~~~~v~~~~-------~~~~~~~~~--------------~~~~~~~~ 103 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE----TNATFIRVVGSE-------LVKKFIGEG--------------ASLVKDIF 103 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH----TTCEEEEEEGGG-------GCCCSTTHH--------------HHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH----hCCCEEEEehHH-------HHHhccchH--------------HHHHHHHH
Confidence 46788999999999999999988763 456788875321 111111111 34566666
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++.+... +.+.........+..+..+++.+..... ...+++|++++.++........
T Consensus 104 ~~~~--~~~~~vl~iDEid~l~~~-----~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vI~ttn~~~~l~~~l~~ 175 (285)
T 3h4m_A 104 KLAK--EKAPSIIFIDEIDAIAAK-----RTDALTGGDREVQRTLMQLLAEMDGFDA-RGDVKIIGATNRPDILDPAILR 175 (285)
T ss_dssp HHHH--HTCSEEEEEETTHHHHBC-----CSSSCCGGGGHHHHHHHHHHHHHHTTCS-SSSEEEEEECSCGGGBCHHHHS
T ss_pred HHHH--HcCCeEEEEECHHHhccc-----CccccCCccHHHHHHHHHHHHHhhCCCC-CCCEEEEEeCCCchhcCHHHcC
Confidence 6554 334899999999999863 2222222222334444444444433322 3457777777766443322222
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..+++.++.++..
T Consensus 176 ~~Rf~~~i~~~~p 188 (285)
T 3h4m_A 176 PGRFDRIIEVPAP 188 (285)
T ss_dssp TTSEEEEEECCCC
T ss_pred CCcCCeEEEECCC
Confidence 2266767777653
No 25
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.44 E-value=3.1e-12 Score=102.76 Aligned_cols=177 Identities=13% Similarity=0.077 Sum_probs=93.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEecCCcccc-cccccccccC-CchhhhcceEEEEecC
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCNRSRLQS-KRPYLSQSID-PSSHVFKLIQMKYVED 88 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~e~~l~~-~~~~~~~~~~-~~~~~~~~i~~~~~~~ 88 (233)
.++|..+.|.||||||||||+++++...... .+..++|++.+..+.. ....+.+..+ ....+.+++.+.....
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFN 101 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecCC
Confidence 3689999999999999999999998765521 2567999987753211 1112222222 2234555666543332
Q ss_pred HHH----HHHHHHHhc---ccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHh-hhcCCcEEE
Q 041690 89 DEE----IKKYFAAFH---QHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHA-NKKSPCKLL 160 (233)
Q Consensus 89 ~~~----l~~~~~~~~---~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l-~~~~~~vlv 160 (233)
... +..+...+. .....|++|++||+++.++....+ .. ......+.+..+++.+..+ ++.+.++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~-----~~-~~~~r~~~~~~~~~~l~~~~~~~g~tvi~ 175 (231)
T 4a74_A 102 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIG-----RG-ALAERQQKLAKHLADLHRLANLYDIAVFV 175 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCS-----TT-HHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCC-----Cc-chhHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 221 122222221 102349999999999988742110 00 0111111122344444443 345888888
Q ss_pred EeecCCCCCchhHHHHHHhhccceEEEecC--CccEEEeeccCc
Q 041690 161 LSDTHLGNSTRLLYIYKRWISSIFTVKGDG--PGSFLLRNKNYS 202 (233)
Q Consensus 161 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~l~~~~~~ 202 (233)
+++.... ....+.++.+.++.+.... .+...+.+++..
T Consensus 176 vtH~~~~----~g~~~~~~~d~~l~l~~~~~~~r~l~~~K~r~~ 215 (231)
T 4a74_A 176 TNQVQAN----GGHILAHSATLRVYLRKGKGGKRIARLIDAPHL 215 (231)
T ss_dssp EEECC-------------CCSEEEEEEECTTSCEEEEEESCC--
T ss_pred EeecccC----cchhhHhhceEEEEEEecCCCeEEEEEEeCCCC
Confidence 8876554 2337888999999998742 223444444443
No 26
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.43 E-value=6.8e-13 Score=111.44 Aligned_cols=143 Identities=10% Similarity=-0.013 Sum_probs=74.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++.+++|+||||||||+|++++|... +.++++++.. .......+. ....++..|
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l----~~~~i~v~~~-------~l~~~~~g~--------------~~~~i~~~f 88 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM----GINPIMMSAG-------ELESGNAGE--------------PAKLIRQRY 88 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH----TCCCEEEEHH-------HHHCC---H--------------HHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeHH-------HhhhccCch--------------hHHHHHHHH
Confidence 456789999999999999999888754 5678888621 111111111 144566666
Q ss_pred HHhcc--cCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHH-----H--hhhcCCcEEEEeecCCC
Q 041690 97 AAFHQ--HDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAIT-----H--ANKKSPCKLLLSDTHLG 167 (233)
Q Consensus 97 ~~~~~--~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-----~--l~~~~~~vlvi~~~~~~ 167 (233)
..+.. ....|++|+|||++.+...... ..........++..|+.+++... . .......+++|+++|.+
T Consensus 89 ~~a~~~~~~~~~~vl~iDEiD~~~~~~~~---~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~ 165 (293)
T 3t15_A 89 REAAEIIRKGNMCCLFINDLDAGAGRMGG---TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF 165 (293)
T ss_dssp HHHHHHHTTSSCCCEEEECCC-----------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSC
T ss_pred HHHHHHHhcCCCeEEEEechhhhcCCCCC---CccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCc
Confidence 65510 1334899999999998873110 00111122344455555554111 0 01123446777777766
Q ss_pred CCchhHHHHHHhhccceEEE
Q 041690 168 NSTRLLYIYKRWISSIFTVK 187 (233)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~i~ 187 (233)
+..........+++..+.++
T Consensus 166 ~~ld~al~R~~R~d~~i~~P 185 (293)
T 3t15_A 166 STLYAPLIRDGRMEKFYWAP 185 (293)
T ss_dssp CC--CHHHHHHHEEEEEECC
T ss_pred ccCCHHHhCCCCCceeEeCc
Confidence 54333333345778777655
No 27
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.43 E-value=5.3e-13 Score=115.06 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..++|+||||||||+||+.++... +.++++++. ......+.+. ....++.+|
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~----~~~~~~v~~-------~~l~~~~~g~--------------~~~~~~~~f 136 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSS-------SDLVSKWMGE--------------SEKLVKQLF 136 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH----TCEEEEEEH-------HHHHSCC-----------------CHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh----CCCEEEeeH-------HHHhhhhcch--------------HHHHHHHHH
Confidence 356789999999999999999888754 467777752 2222222222 155677777
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++.+... +.........+++.+++..++. +......+++|++++.++.... .+
T Consensus 137 ~~a~--~~~~~vl~iDEid~l~~~-----r~~~~~~~~~~~~~~ll~~l~~---~~~~~~~v~vI~atn~~~~ld~--al 204 (355)
T 2qp9_X 137 AMAR--ENKPSIIFIDQVDALTGT-----RGEGESEASRRIKTELLVQMNG---VGNDSQGVLVLGATNIPWQLDS--AI 204 (355)
T ss_dssp HHHH--HTSSEEEEEECGGGGTC-----------CTHHHHHHHHHHHHHHH---CC---CCEEEEEEESCGGGSCH--HH
T ss_pred HHHH--HcCCeEEEEechHhhccc-----CCCCcchHHHHHHHHHHHHhhc---ccccCCCeEEEeecCCcccCCH--HH
Confidence 7664 234899999999999873 2222222333444444444433 2233456788888887643322 34
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
.++++..++++..
T Consensus 205 ~rRf~~~i~i~~P 217 (355)
T 2qp9_X 205 RRRFERRIYIPLP 217 (355)
T ss_dssp HHTCCEEEECCCC
T ss_pred HcccCEEEEeCCc
Confidence 4467777777653
No 28
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.38 E-value=3.6e-13 Score=113.49 Aligned_cols=140 Identities=14% Similarity=0.219 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..++|+||||||||++++.++.. .+.++++++. ........+.. ...++.+|
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~----~~~~~i~v~~-------~~l~~~~~g~~--------------~~~~~~~f 101 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE----CQANFISIKG-------PELLTMWFGES--------------EANVREIF 101 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH----TTCEEEEECH-------HHHHHHHHTTC--------------TTHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH----hCCCEEEEEh-------HHHHhhhcCch--------------HHHHHHHH
Confidence 57889999999999999999988764 3466777742 22222222211 34566777
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++.+....... .........+.+..++..++. +. ....+++|+++|.++........
T Consensus 102 ~~a~--~~~p~il~iDEid~l~~~~~~~--~~~~~~~~~~~~~~lL~~l~~---~~-~~~~v~vi~atn~~~~ld~al~r 173 (301)
T 3cf0_A 102 DKAR--QAAPCVLFFDELDSIAKARGGN--IGDGGGAADRVINQILTEMDG---MS-TKKNVFIIGATNRPDIIDPAILR 173 (301)
T ss_dssp HHHH--HTCSEEEEECSTTHHHHHHTTT--TCCSSCSCCHHHHHHHHHHHS---SC-TTSSEEEEEEESCGGGSCGGGGS
T ss_pred HHHH--hcCCeEEEEEChHHHhhccCCC--cCCcchHHHHHHHHHHHHhhc---cc-CCCCEEEEEecCCccccChHHhc
Confidence 7664 2348999999999988632110 001111222334444433332 22 23457788888876433222122
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
..+++..++++..
T Consensus 174 ~gRf~~~i~i~~p 186 (301)
T 3cf0_A 174 PGRLDQLIYIPLP 186 (301)
T ss_dssp TTSSCEEEECCCC
T ss_pred CCccceEEecCCc
Confidence 2367777777653
No 29
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.38 E-value=3.5e-12 Score=103.65 Aligned_cols=171 Identities=15% Similarity=0.110 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccc-cccCCchhhhc-ceEEE----------
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLS-QSIDPSSHVFK-LIQMK---------- 84 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~-~~~~~~~~~~~-~i~~~---------- 84 (233)
++|+.++|+|+||+|||+||.|++.+.+...+.+++|++.|...+....++. ...+....... ++.+.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 107 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLP 107 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---------
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhhcc
Confidence 5899999999999999999999998876566889999997742211111111 11110000000 11110
Q ss_pred ----E----ecCHHHH-HHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcC
Q 041690 85 ----Y----VEDDEEI-KKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKS 155 (233)
Q Consensus 85 ----~----~~~~~~l-~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~ 155 (233)
+ ......+ ..+...+. ...++++|||+++.+.... ......... +..+...+++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vviD~~~~l~~~~--------~~~~~~~~~-----~~~L~~~a~~~~ 172 (251)
T 2zts_A 108 SEEKFVLEDRFNVDNFLRYIYRVVK--AINAKRLVIDSIPSIALRL--------EEERKIREV-----LLKLNTILLEMG 172 (251)
T ss_dssp ----------CCHHHHHHHHHHHHH--HTTCSEEEEECHHHHHHHS--------SSGGGHHHH-----HHHHHHHHHHHC
T ss_pred cchhccccccccHHHHHHHHHHHHH--hcCCcEEEEEcHHHHhhhc--------cChHHHHHH-----HHHHHHHHHHcC
Confidence 0 0111122 22222222 3348999999998887531 111111111 233333455668
Q ss_pred CcEEEEeecCCCC--CchhHHHHHHhhccceEEEec--CC---ccEEEeeccCc
Q 041690 156 PCKLLLSDTHLGN--STRLLYIYKRWISSIFTVKGD--GP---GSFLLRNKNYS 202 (233)
Q Consensus 156 ~~vlvi~~~~~~~--~~~~~~~~~~~~~~~~~i~~~--~~---~~~~l~~~~~~ 202 (233)
.+++++++.+.+. .....-..+++.|.++.+... +. +...+.|++.+
T Consensus 173 i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~~~~~~~~~~R~l~I~K~R~~ 226 (251)
T 2zts_A 173 VTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDLQEKNIELKRYVLIRKMRET 226 (251)
T ss_dssp CEEEEEECCC----CCSSSSSCGGGGCSEEEEEEEEECSSSEEEEEEEEEETTC
T ss_pred CCeEEEEEEecccccccccCCceeEEeeEEEEEEEEecCCeEEEEEEEEEcCCC
Confidence 8888887765332 111111456778888777642 22 22445665544
No 30
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.37 E-value=1.2e-12 Score=117.27 Aligned_cols=136 Identities=17% Similarity=0.202 Sum_probs=84.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..+||+||||||||++|+.++. ..+.++++++.. .......+.. ...++.+|
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~----~~~~~fv~vn~~-------~l~~~~~g~~--------------~~~~~~~f 290 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVAN----ETGAFFFLINGP-------EIMSKLAGES--------------ESNLRKAF 290 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHH----HCSSEEEEEEHH-------HHHTSCTTHH--------------HHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHH----HhCCCEEEEEch-------Hhhhhhcchh--------------HHHHHHHH
Confidence 4667899999999999999998765 446788888522 2222222111 44667777
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++.+... +.........+++..|+.+++.. .....+++++++|.++.......-
T Consensus 291 ~~A~--~~~p~iLfLDEId~l~~~-----~~~~~~~~~~~~~~~LL~~ld~~----~~~~~v~vIaaTn~~~~Ld~al~r 359 (489)
T 3hu3_A 291 EEAE--KNAPAIIFIDELDAIAPK-----REKTHGEVERRIVSQLLTLMDGL----KQRAHVIVMAATNRPNSIDPALRR 359 (489)
T ss_dssp HHHH--HTCSEEEEEESHHHHCBC-----TTSCCCHHHHHHHHHHHHHHHHS----CTTSCEEEEEEESCGGGBCGGGGS
T ss_pred HHHH--hcCCcEEEecchhhhccc-----cccccchHHHHHHHHHHHHhhcc----ccCCceEEEEecCCccccCHHHhC
Confidence 7665 334899999999999873 32233344445555555555533 234567888888876432222122
Q ss_pred HHhhccceEEEe
Q 041690 177 KRWISSIFTVKG 188 (233)
Q Consensus 177 ~~~~~~~~~i~~ 188 (233)
+.+|+..+.+..
T Consensus 360 ~gRf~~~i~i~~ 371 (489)
T 3hu3_A 360 FGRFDREVDIGI 371 (489)
T ss_dssp TTSSCEEEECCC
T ss_pred CCcCceEEEeCC
Confidence 236676777665
No 31
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.35 E-value=1.5e-12 Score=115.51 Aligned_cols=137 Identities=17% Similarity=0.198 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..+||+||||||||+||+.++... .+..+++++.. .....+.+.. ...++.+|
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~---~~~~~~~v~~~-------~l~~~~~g~~--------------~~~~~~~f 220 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA---NNSTFFSISSS-------DLVSKWLGES--------------EKLVKNLF 220 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC---CSSEEEEECCC----------------C--------------CCTHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCCCEEEEeHH-------HHHhhhcchH--------------HHHHHHHH
Confidence 366899999999999999999888754 25667777522 1111111111 23455666
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++.+... +.........+++++++..++. +......+++|+++|.++.... .+
T Consensus 221 ~~a~--~~~~~vl~iDEid~l~~~-----~~~~~~~~~~~~~~~lL~~l~~---~~~~~~~v~vI~atn~~~~ld~--al 288 (444)
T 2zan_A 221 QLAR--ENKPSIIFIDEIDSLCGS-----RSENESEAARRIKTEFLVQMQG---VGVDNDGILVLGATNIPWVLDS--AI 288 (444)
T ss_dssp HHHH--HSCSEEEEESCTTTTCCC-----SSCCCCGGGHHHHHHHHTTTTC---SSCCCSSCEEEEEESCGGGSCH--HH
T ss_pred HHHH--HcCCeEEEEechHhhccC-----CCCccccHHHHHHHHHHHHHhC---cccCCCCEEEEecCCCccccCH--HH
Confidence 6554 234999999999999873 2222222333343333332221 1122455777877877643322 44
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
.++++.++.++..
T Consensus 289 ~rRf~~~i~i~~P 301 (444)
T 2zan_A 289 RRRFEKRIYIPLP 301 (444)
T ss_dssp HTTCCEEEECCCC
T ss_pred HhhcceEEEeCCc
Confidence 5577777777653
No 32
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.35 E-value=2.1e-12 Score=115.04 Aligned_cols=139 Identities=14% Similarity=0.189 Sum_probs=78.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
.+..++|+||||||||+|++.++... +.++++++.. ++.....+. ....++.+|.
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~----~~~f~~is~~-------~~~~~~~g~--------------~~~~~r~lf~ 102 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEA----NVPFFHISGS-------DFVELFVGV--------------GAARVRDLFA 102 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHH----TCCEEEEEGG-------GTTTCCTTH--------------HHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc----CCCeeeCCHH-------HHHHHHhcc--------------cHHHHHHHHH
Confidence 44669999999999999999887643 5678888632 111111111 1456777787
Q ss_pred HhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHH
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYK 177 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~ 177 (233)
.+. ...|++|||||++++......+ .+.........+++|+..++.+ .. ...++|++++|.++.........
T Consensus 103 ~A~--~~~p~ILfIDEid~l~~~r~~~--~~g~~~~~~~~l~~LL~~ld~~---~~-~~~viVIaaTn~~~~Ld~allR~ 174 (476)
T 2ce7_A 103 QAK--AHAPCIVFIDEIDAVGRHRGAG--LGGGHDEREQTLNQLLVEMDGF---DS-KEGIIVMAATNRPDILDPALLRP 174 (476)
T ss_dssp HHH--HTCSEEEEEETGGGTCCC-----------CHHHHHHHHHHHHHHHS---CG-GGTEEEEEEESCGGGSCGGGGST
T ss_pred HHH--hcCCCEEEEechhhhhhhcccc--cCcCcHHHHHHHHHHHHHHhcc---CC-CCCEEEEEecCChhhhchhhccc
Confidence 765 3349999999999998742100 0011111122333443333322 22 23577777787764332222223
Q ss_pred HhhccceEEEec
Q 041690 178 RWISSIFTVKGD 189 (233)
Q Consensus 178 ~~~~~~~~i~~~ 189 (233)
.+|+..+.++..
T Consensus 175 gRFd~~i~i~~P 186 (476)
T 2ce7_A 175 GRFDKKIVVDPP 186 (476)
T ss_dssp TSSCEEEECCCC
T ss_pred CcceeEeecCCC
Confidence 467777777653
No 33
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.34 E-value=2.5e-11 Score=122.36 Aligned_cols=161 Identities=13% Similarity=0.138 Sum_probs=96.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
++|++++|+||||||||+||.|++.+.+ ..|.+++||++|+.+..... ...+++. +++.+......+.+.+++
T Consensus 32 p~G~vtlI~G~pGsGKT~lalq~a~~~~-~~Ge~vlYI~tEes~~~~ra-~~lG~dl-----~~i~v~~p~~~e~ll~il 104 (2050)
T 3cmu_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIYA-RKLGVDI-----DNLLCSQPDTGEQALEIC 104 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTSCCCHHHH-HHTTCCT-----TTCEEECCSSHHHHHHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHHhh-ccCCceEEEEccCcchhhHH-hhhccCc-----ccceecCCCcHHHHHHHH
Confidence 5899999999999999999999999888 67899999999864433221 0111111 133222223345555555
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCC-cc-hhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCC--------
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTN-PR-GRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHL-------- 166 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~-------- 166 (233)
..+.. ...+++|||||+++++.........+. .. .+...+.+. +..+...+++.+.+++++.+...
T Consensus 105 ~~L~~-~~~~~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l~~~---l~~L~~~ak~~gitVVlTNQv~~~~g~~fg~ 180 (2050)
T 3cmu_A 105 DALAR-SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA---MRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 180 (2050)
T ss_dssp HHHHH-HTCCSEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHHHHH---HHHHHHHHHTTTCEEEEEECCEECTTCCSSC
T ss_pred HHHHh-ccCCcEEEEcChHHhhhhcccccccccchhhHHHHHHHHH---HHHHHHHHHHhCCeEEEEEecccccccccCc
Confidence 44332 223899999999999984211000001 11 111111112 23333445566777777765421
Q ss_pred CCCchhHHHHHHhhccceEEEe
Q 041690 167 GNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+..|.+...+.++.+.++.+..
T Consensus 181 ~~~~~gG~~l~~iaD~VI~L~r 202 (2050)
T 3cmu_A 181 PETTTGGNALKFYASVRLDIRR 202 (2050)
T ss_dssp CEECSSHHHHHHHEEEEEEEEE
T ss_pred ccccCCcchhhhhCcEEEEEEe
Confidence 1235567799999999999964
No 34
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.34 E-value=6e-12 Score=125.50 Aligned_cols=161 Identities=12% Similarity=0.150 Sum_probs=96.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
++|+.++|+||||+|||+||++++.+.+ ..|.+|+|++.|..+.... ...++.. .+++.+......+.+...+
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLq~a~~~~-~~G~~vlyis~E~s~~~~~---a~~lGvd---~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIY---ARKLGVD---IDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEECTTSCCCHHH---HHHTTCC---GGGCEEECCSSHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCeEEEEccCchHHHH---HHHcCCC---HHHeEEcCCCCHHHHHHHH
Confidence 4899999999999999999999999988 6788999999886443321 1111111 1245444444445444444
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCc--chhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCC-------
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNP--RGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLG------- 167 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~------- 167 (233)
..+.. ...|++||||++++++.....+.+.++. ..+...+.+. +..+...+++.+.+++++++.+..
T Consensus 454 ~~lv~-~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~---Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~ 529 (1706)
T 3cmw_A 454 DALAR-SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA---MRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 529 (1706)
T ss_dssp HHHHH-HTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHH---HHHHHHHHHHHTCEEEEEECEEECTTCCSSC
T ss_pred HHHHH-hcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHH---HHHHHHHHHHcCCEEEEEeecccccccccCC
Confidence 33211 2349999999999998621000011111 0111111112 333333456678888888766432
Q ss_pred -CCchhHHHHHHhhccceEEEe
Q 041690 168 -NSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~i~~ 188 (233)
..|.+...++++.+.++.+..
T Consensus 530 ~~~p~gg~ale~~ADv~L~L~R 551 (1706)
T 3cmw_A 530 PETTTGGNALKFYASVRLDIRR 551 (1706)
T ss_dssp CEEESSCSHHHHHEEEEEEEEE
T ss_pred CccCCCCcceeeeCCEEEEEEe
Confidence 123334589999999888765
No 35
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.33 E-value=1.2e-11 Score=124.60 Aligned_cols=162 Identities=13% Similarity=0.128 Sum_probs=96.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKY 95 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 95 (233)
.++|++++|+||||+|||+||++++.+++ ..|.+|+|++.|..+.... ...++.. .+++.+......+.+...
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a-~~G~~vlyis~E~s~~~~~---a~~lGvd---~~~L~I~~~~~~e~il~~ 452 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIY---ARKLGVD---IDNLLCSQPDTGEQALEI 452 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTSCCCHHH---HHHTTCC---TTTCEEECCSSHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEEEcCCCHHHHH---HHHcCCC---HHHeEEeCCCCHHHHHHH
Confidence 35999999999999999999999999988 6788999999886443221 1111110 124444333444444444
Q ss_pred HHHhcccCCCCcEEEEeCCCcccccc-ccccccCCcc-hhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCC------
Q 041690 96 FAAFHQHDKIPTAVVVDDFGDLFDDR-TCQERYTNPR-GRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLG------ 167 (233)
Q Consensus 96 ~~~~~~~~~~p~iIvIDei~~~~~~~-~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~------ 167 (233)
+..+.. ...|++||||++++++... ..+..++... .+...+.+. +..+...+++.+.+++++++.+..
T Consensus 453 ~~~lv~-~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~---Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 453 CDALAR-SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA---MRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHH-HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHH---HHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHH-hcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHH---HHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 433211 2349999999999998521 1001011101 111112222 222323345667778887765422
Q ss_pred --CCchhHHHHHHhhccceEEEe
Q 041690 168 --NSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 168 --~~~~~~~~~~~~~~~~~~i~~ 188 (233)
..|.+...++++.+.++.+..
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R 551 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRR 551 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEe
Confidence 234566689999999998775
No 36
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.33 E-value=1e-11 Score=108.10 Aligned_cols=135 Identities=19% Similarity=0.218 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
++..+||+||||||||++|+.++. ..+..+++++... ......+ .....+..+|.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~----~~~~~~~~v~~~~-------l~~~~~g--------------~~~~~~~~~~~ 201 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAA----ESNATFFNISAAS-------LTSKYVG--------------EGEKLVRALFA 201 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHH----HTTCEEEEECSCC-------C---------------------CHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH----hhcCcEEEeeHHH-------hhccccc--------------hHHHHHHHHHH
Confidence 568999999999999999998765 4567888885321 1111111 11456667777
Q ss_pred HhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHH
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYK 177 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~ 177 (233)
.+.. ..|++|||||++.+.... .........+++..++..++.+.. .....+++|++++.++.... .+.
T Consensus 202 ~a~~--~~~~il~iDEid~l~~~~-----~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~v~vI~atn~~~~l~~--~l~ 270 (389)
T 3vfd_A 202 VARE--LQPSIIFIDQVDSLLCER-----REGEHDASRRLKTEFLIEFDGVQS--AGDDRVLVMGATNRPQELDE--AVL 270 (389)
T ss_dssp HHHH--SSSEEEEEETGGGGC-------------CTHHHHHHHHHHHHHHHC-------CEEEEEEESCGGGCCH--HHH
T ss_pred HHHh--cCCeEEEEECchhhcccC-----CCccchHHHHHHHHHHHHhhcccc--cCCCCEEEEEecCCchhcCH--HHH
Confidence 6653 338999999999997732 112222334444444444443311 12345778888776543322 344
Q ss_pred HhhccceEEEe
Q 041690 178 RWISSIFTVKG 188 (233)
Q Consensus 178 ~~~~~~~~i~~ 188 (233)
+++..+++++.
T Consensus 271 ~R~~~~i~i~~ 281 (389)
T 3vfd_A 271 RRFIKRVYVSL 281 (389)
T ss_dssp TTCCEEEECCC
T ss_pred cCcceEEEcCC
Confidence 45666666654
No 37
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.32 E-value=1.3e-11 Score=103.18 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..++|+||||||||++++.++.. .+.++++++... ......+.. ...++.++
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~----~~~~~~~i~~~~-------l~~~~~~~~--------------~~~~~~~~ 106 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATE----CSATFLNISAAS-------LTSKYVGDG--------------EKLVRALF 106 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH----TTCEEEEEESTT-------TSSSSCSCH--------------HHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH----hCCCeEEeeHHH-------HhhcccchH--------------HHHHHHHH
Confidence 36789999999999999999988763 356777775321 111111111 44566666
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++.+..... ..........+..++..++.... ...+..++++++++.++.... .+
T Consensus 107 ~~~~--~~~~~vl~iDEid~l~~~~~-----~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~v~vi~~tn~~~~l~~--~l 176 (297)
T 3b9p_A 107 AVAR--HMQPSIIFIDEVDSLLSERS-----SSEHEASRRLKTEFLVEFDGLPG-NPDGDRIVVLAATNRPQELDE--AA 176 (297)
T ss_dssp HHHH--HTCSEEEEEETGGGTSBCC----------CCSHHHHHHHHHHHHHCC-------CEEEEEEESCGGGBCH--HH
T ss_pred HHHH--HcCCcEEEeccHHHhccccc-----cCcchHHHHHHHHHHHHHhcccc-cCCCCcEEEEeecCChhhCCH--HH
Confidence 6554 23489999999999987421 11111122333333333333211 011345777887876643322 33
Q ss_pred HHhhccceEEEe
Q 041690 177 KRWISSIFTVKG 188 (233)
Q Consensus 177 ~~~~~~~~~i~~ 188 (233)
.++++..+.++.
T Consensus 177 ~~R~~~~i~~~~ 188 (297)
T 3b9p_A 177 LRRFTKRVYVSL 188 (297)
T ss_dssp HHHCCEEEECCC
T ss_pred HhhCCeEEEeCC
Confidence 335666666664
No 38
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.31 E-value=4.5e-12 Score=105.46 Aligned_cols=136 Identities=17% Similarity=0.262 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
...+++|+||||||||||++.++... +...++++... ......+. ....+..+|.
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~----~~~~i~i~g~~-------l~~~~~~~--------------~~~~i~~vf~ 97 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANES----GLNFISVKGPE-------LLNMYVGE--------------SERAVRQVFQ 97 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT----TCEEEEEETTT-------TCSSTTHH--------------HHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHc----CCCEEEEEcHH-------HHhhhhhH--------------HHHHHHHHHH
Confidence 34459999999999999999887643 34577775332 11111000 0345667777
Q ss_pred HhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHH
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYK 177 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~ 177 (233)
.+. ...|+++++||++.+.... .........+..+++...++.. .+...+++++.++.++.........
T Consensus 98 ~a~--~~~p~i~~~Deid~~~~~r-----~~~~~~~~~~~~~~~l~~Lsgg----~~~~~~i~ia~tn~p~~LD~al~r~ 166 (274)
T 2x8a_A 98 RAK--NSAPCVIFFDEVDALCPRR-----SDRETGASVRVVNQLLTEMDGL----EARQQVFIMAATNRPDIIDPAILRP 166 (274)
T ss_dssp HHH--HTCSEEEEEETCTTTCC--------------CTTHHHHHHHHHHTC----CSTTCEEEEEEESCGGGSCHHHHST
T ss_pred HHH--hcCCCeEeeehhhhhhccc-----CCCcchHHHHHHHHHHHhhhcc----cccCCEEEEeecCChhhCCHhhcCc
Confidence 653 2238999999999987632 1111111112223333222222 2345677888888776543332223
Q ss_pred HhhccceEEEec
Q 041690 178 RWISSIFTVKGD 189 (233)
Q Consensus 178 ~~~~~~~~i~~~ 189 (233)
.+|+..++++..
T Consensus 167 gRfd~~i~~~~P 178 (274)
T 2x8a_A 167 GRLDKTLFVGLP 178 (274)
T ss_dssp TSSCEEEECCSC
T ss_pred ccCCeEEEeCCc
Confidence 488988888754
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.31 E-value=7.9e-12 Score=107.73 Aligned_cols=136 Identities=17% Similarity=0.189 Sum_probs=77.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+...++|+||||||||++|+.++. ..+..+++++.. .......+.. ...++.++
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~----~~~~~~~~i~~~-------~l~~~~~g~~--------------~~~~~~~~ 169 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIAS----QSGATFFSISAS-------SLTSKWVGEG--------------EKMVRALF 169 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHH----HTTCEEEEEEGG-------GGCCSSTTHH--------------HHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH----HcCCeEEEEehH-------HhhccccchH--------------HHHHHHHH
Confidence 3677899999999999999998876 346778888632 1111111111 44556666
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+. ...|++|||||++.+... +.........+.+..++..++.+. ......+++|++++.++.... .+
T Consensus 170 ~~a~--~~~~~vl~iDEid~l~~~-----~~~~~~~~~~~~~~~lL~~l~~~~--~~~~~~v~vI~atn~~~~l~~--~l 238 (357)
T 3d8b_A 170 AVAR--CQQPAVIFIDEIDSLLSQ-----RGDGEHESSRRIKTEFLVQLDGAT--TSSEDRILVVGATNRPQEIDE--AA 238 (357)
T ss_dssp HHHH--HTCSEEEEEETHHHHTBC-----------CHHHHHHHHHHHHHHC------CCCCEEEEEEESCGGGBCH--HH
T ss_pred HHHH--hcCCeEEEEeCchhhhcc-----CCCCcchHHHHHHHHHHHHHhccc--ccCCCCEEEEEecCChhhCCH--HH
Confidence 6554 233899999999999873 211222233334444433333221 122456778877776543321 34
Q ss_pred HHhhccceEEEe
Q 041690 177 KRWISSIFTVKG 188 (233)
Q Consensus 177 ~~~~~~~~~i~~ 188 (233)
.++++..+.++.
T Consensus 239 ~~Rf~~~i~i~~ 250 (357)
T 3d8b_A 239 RRRLVKRLYIPL 250 (357)
T ss_dssp HTTCCEEEECCC
T ss_pred HhhCceEEEeCC
Confidence 446666666664
No 40
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.29 E-value=6.2e-12 Score=102.21 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccccc-ccCCchhh-hcceEEE---------
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQ-SIDPSSHV-FKLIQMK--------- 84 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~-~~~~~~~~-~~~i~~~--------- 84 (233)
.++|..+.|.||||||||||+++++.......+..++|++.+............ +....... ..++.+.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 106 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL 106 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccc
Confidence 469999999999999999999999865542346678888766321111111100 01000000 0011110
Q ss_pred ----------EecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 041690 85 ----------YVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKK 154 (233)
Q Consensus 85 ----------~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~ 154 (233)
.....+....+...+. ...|+++++||+++.++.. ......+.. +.+++..+++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~p~~lilDep~~~ld~~--------~d~~~~~~~-----l~~l~~~l~~~ 171 (251)
T 2ehv_A 107 PSEEKFVLEDRFNVDNFLRYIYRVVK--AINAKRLVIDSIPSIALRL--------EEERKIREV-----LLKLNTILLEM 171 (251)
T ss_dssp -----------CCHHHHHHHHHHHHH--HTTCSEEEEECHHHHHHHS--------SSGGGHHHH-----HHHHHHHHHHH
T ss_pred ccccceeccCcccHHHHHHHHHHHHH--hhCCCEEEEccHHHHHhhc--------CCHHHHHHH-----HHHHHHHHHHC
Confidence 0001112222222222 2239999999999998631 011111111 45556666677
Q ss_pred CCcEEEEeecCCCCC-chhHHHHHHhh-ccceEEEec
Q 041690 155 SPCKLLLSDTHLGNS-TRLLYIYKRWI-SSIFTVKGD 189 (233)
Q Consensus 155 ~~~vlvi~~~~~~~~-~~~~~~~~~~~-~~~~~i~~~ 189 (233)
|.+++++++...... ......+++++ |.++.+...
T Consensus 172 g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~~ 208 (251)
T 2ehv_A 172 GVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDLQ 208 (251)
T ss_dssp CCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEEE
T ss_pred CCeEEEEECCCCCCcccccccChhhEeeeEEEEEeee
Confidence 888888877653320 00001236777 999888753
No 41
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.29 E-value=3.2e-11 Score=96.69 Aligned_cols=168 Identities=15% Similarity=0.100 Sum_probs=86.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccc-cccCCchhhhcceEE-EEe-------
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLS-QSIDPSSHVFKLIQM-KYV------- 86 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~-~~~~~~~~~~~~i~~-~~~------- 86 (233)
.++|..++|+||||||||||+++++.... ..+.+++|++.+.........+. ............+.+ ...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGL-RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHH-HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHH-HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 35899999999999999999999998777 55778999987632111111110 011111000001111 000
Q ss_pred -----cCHHHHHH-HHHHhcccCCCCc--EEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHh-hhcCCc
Q 041690 87 -----EDDEEIKK-YFAAFHQHDKIPT--AVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHA-NKKSPC 157 (233)
Q Consensus 87 -----~~~~~l~~-~~~~~~~~~~~p~--iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l-~~~~~~ 157 (233)
.+...+.. +...+. ...|+ +|||||+++++.. +. ... ..+++.+..+ ++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~llilDe~~~~~~~--------d~--~~~------~~~~~~l~~~~~~~~~~ 160 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQ--KLGYGKARLVIDSVSALFLD--------KP--AMA------RKISYYLKRVLNKWNFT 160 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHH--HHCSSCEEEEEETGGGGSSS--------CG--GGH------HHHHHHHHHHHHHTTEE
T ss_pred eeecCCCHHHHHHHHHHHHH--hhCCCceEEEEECchHhhcC--------CH--HHH------HHHHHHHHHHHHhCCCe
Confidence 02223222 222222 12388 9999999988742 01 111 1133444443 344677
Q ss_pred EEEEeecCCCCCchhHHHHHHhhccceEEEec--CC---ccEEEeeccCc
Q 041690 158 KLLLSDTHLGNSTRLLYIYKRWISSIFTVKGD--GP---GSFLLRNKNYS 202 (233)
Q Consensus 158 vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~---~~~~l~~~~~~ 202 (233)
++++++............+.++.+.++.+... +. +...+.+.+.+
T Consensus 161 vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~~~~~~~r~l~v~K~r~~ 210 (235)
T 2w0m_A 161 IYATSQYAITTSQAFGFGVEHVADGIIRFRRMIRNGELHRYILIEKMRQT 210 (235)
T ss_dssp EEEEEC-----------CHHHHCSEEEEEEEEEETTEEEEEEEEEEETTC
T ss_pred EEEEeccCcccccccccchheeeeEEEEEEEEecCCcEEEEEEEEeccCC
Confidence 77777665211000002477889999998864 11 23455554443
No 42
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.29 E-value=8.3e-11 Score=98.52 Aligned_cols=173 Identities=6% Similarity=0.071 Sum_probs=90.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccc-c--cccCCc------------------
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYL-S--QSIDPS------------------ 74 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~-~--~~~~~~------------------ 74 (233)
..+|..++|.||||+|||||+++++...+...|.+++|++.|........++ . +.....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 111 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQW 111 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHH
Confidence 4799999999999999999999999988855577899998763111100000 0 000000
Q ss_pred -hhhhc--ceEEEEe---cCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHH
Q 041690 75 -SHVFK--LIQMKYV---EDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAI 148 (233)
Q Consensus 75 -~~~~~--~i~~~~~---~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 148 (233)
..+++ .+.+... .....++..+... .....|++|||||++++.... ....+. .....+++.+
T Consensus 112 ~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~-~~~~~p~llilDept~~~~~~-------~~~d~~----~~~~~i~~~L 179 (296)
T 1cr0_A 112 FDELFGNDTFHLYDSFAEAETDRLLAKLAYM-RSGLGCDVIILDHISIVVSAS-------GESDER----KMIDNLMTKL 179 (296)
T ss_dssp HHHHHSSSCEEEECCCCSCCHHHHHHHHHHH-HHTTCCSEEEEEEEC------------------C----HHHHHHHHHH
T ss_pred HHHHhccCCEEEECCCCCCCHHHHHHHHHHH-HHhcCCCEEEEcCccccCCCC-------CCCCHH----HHHHHHHHHH
Confidence 00111 2333211 1233333333321 113349999999999987520 000010 1112245555
Q ss_pred HHhh-hcCCcEEEEeecCCCC---------Cc-----hhHHHHHHhhccceEEEecC------CccEEEeecc
Q 041690 149 THAN-KKSPCKLLLSDTHLGN---------ST-----RLLYIYKRWISSIFTVKGDG------PGSFLLRNKN 200 (233)
Q Consensus 149 ~~l~-~~~~~vlvi~~~~~~~---------~~-----~~~~~~~~~~~~~~~i~~~~------~~~~~l~~~~ 200 (233)
+.++ +.+.+++++++.+..+ .| ++-..++++.+.++.+.... .+...+.+++
T Consensus 180 ~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~~~~~~~~~l~i~K~R 252 (296)
T 1cr0_A 180 KGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNLVLVRILKCR 252 (296)
T ss_dssp HHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-------CEEEEEEEET
T ss_pred HHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcccCCCCeEEEEEEccc
Confidence 5554 3488888888875211 01 11114677899999997632 2356666666
No 43
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.27 E-value=2.1e-11 Score=100.02 Aligned_cols=138 Identities=11% Similarity=0.144 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
....++|+||||||||++++.++... +.++++++... ......+. ....+..+|.
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~----~~~~~~i~~~~-------~~~~~~~~--------------~~~~~~~~~~ 98 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA----KVPFFTISGSD-------FVEMFVGV--------------GASRVRDMFE 98 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH----TCCEEEECSCS-------STTSCCCC--------------CHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc----CCCEEEEeHHH-------HHHHhhhh--------------hHHHHHHHHH
Confidence 45679999999999999999887643 45677775322 11111111 1456667777
Q ss_pred HhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHH
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYK 177 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~ 177 (233)
.+. ...|+++||||++.+........ ..........+..++ ..+.... ....+++|++++.++.........
T Consensus 99 ~a~--~~~~~il~iDeid~l~~~~~~~~--~~~~~~~~~~~~~ll---~~l~~~~-~~~~~~vI~~tn~~~~l~~~l~r~ 170 (257)
T 1lv7_A 99 QAK--KAAPCIIFIDEIDAVGRQRGAGL--GGGHDEREQTLNQML---VEMDGFE-GNEGIIVIAATNRPDVLDPALLRP 170 (257)
T ss_dssp HHH--TTCSEEEEETTHHHHTCCCSTTS--CCTTCHHHHHHHHHH---HHHHTCC-SSSCEEEEEEESCTTTSCGGGGST
T ss_pred HHH--HcCCeeehhhhhhhhccCCCCCc--CCCchHHHHHHHHHH---HHhhCcc-cCCCEEEEEeeCCchhCCHHHcCC
Confidence 654 33489999999998876321000 001111112222222 2232222 234577777777665332222222
Q ss_pred HhhccceEEEe
Q 041690 178 RWISSIFTVKG 188 (233)
Q Consensus 178 ~~~~~~~~i~~ 188 (233)
.+++..+.++.
T Consensus 171 ~rf~~~i~i~~ 181 (257)
T 1lv7_A 171 GRFDRQVVVGL 181 (257)
T ss_dssp TSSCEEEECCC
T ss_pred CcCCeEEEeCC
Confidence 35666666654
No 44
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.27 E-value=8.3e-12 Score=102.28 Aligned_cols=77 Identities=22% Similarity=0.345 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
..+..++|+||||||||++++.++... +.++++++... +.....+.. ...+..++
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~----~~~~~~~~~~~-------~~~~~~~~~--------------~~~~~~~~ 91 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA----QVPFLAMAGAE-------FVEVIGGLG--------------AARVRSLF 91 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----TCCEEEEETTT-------TSSSSTTHH--------------HHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCCEEEechHH-------HHhhccChh--------------HHHHHHHH
Confidence 456789999999999999999887744 46778876332 111111110 34556666
Q ss_pred HHhcccCCCCcEEEEeCCCccccc
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDD 120 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~ 120 (233)
..+. ...|++|+|||++.+...
T Consensus 92 ~~a~--~~~~~vl~iDeid~l~~~ 113 (262)
T 2qz4_A 92 KEAR--ARAPCIVYIDEIDAVGKK 113 (262)
T ss_dssp HHHH--HTCSEEEEEECC------
T ss_pred HHHH--hcCCeEEEEeCcchhhcc
Confidence 6554 234899999999999763
No 45
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.27 E-value=1.4e-10 Score=98.29 Aligned_cols=174 Identities=13% Similarity=0.033 Sum_probs=96.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccccc---ccC------------Cch------
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQ---SID------------PSS------ 75 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~---~~~------------~~~------ 75 (233)
.+|..++|.|+||+|||+|+.+++..++ ..|.+|+|++.|.....-..++.. .++ ..+
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~ 144 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMS-DNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSM 144 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHH-TTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHH
Confidence 6999999999999999999999999888 567899999987322111111100 010 000
Q ss_pred ---hhh-cceEEEEe--cCHHHHHHHHHHhcccCCCCc--EEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHH
Q 041690 76 ---HVF-KLIQMKYV--EDDEEIKKYFAAFHQHDKIPT--AVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNA 147 (233)
Q Consensus 76 ---~~~-~~i~~~~~--~~~~~l~~~~~~~~~~~~~p~--iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 147 (233)
.+. ..+.+... .....+...+..+.. +..++ +||||+++.+... .. ...+.. .+..+...
T Consensus 145 a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~-~~~~~~~lVVID~l~~l~~~----~~---~~~r~~----~i~~~~~~ 212 (315)
T 3bh0_A 145 AIGEISNSNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEPA----KA---NDSRTN----QISQISRD 212 (315)
T ss_dssp HHHHHHTSCEEEECCSCCBHHHHHHHHHHHHH-TSSSCCEEEEEECGGGSBCS----CT---TSCHHH----HHHHHHHH
T ss_pred HHHHHhCCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCeEEEEeCchhcCCC----CC---CCCHHH----HHHHHHHH
Confidence 000 13333211 123344443333321 22367 9999999988752 11 111111 22223333
Q ss_pred HHH-hhhcCCcEEEEeecCCCC------Cch-----hHHHHHHhhccceEEEecC----------CccEEEeeccCcc
Q 041690 148 ITH-ANKKSPCKLLLSDTHLGN------STR-----LLYIYKRWISSIFTVKGDG----------PGSFLLRNKNYSR 203 (233)
Q Consensus 148 ~~~-l~~~~~~vlvi~~~~~~~------~~~-----~~~~~~~~~~~~~~i~~~~----------~~~~~l~~~~~~~ 203 (233)
++. +++.+.+++++++.+... .|. +--.+++..|.++.+.... ....++.|+++.+
T Consensus 213 Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~r~~~~~~~~~~~~~~~l~v~K~R~G~ 290 (315)
T 3bh0_A 213 LKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHRDGP 290 (315)
T ss_dssp HHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEEEHHHHCTTCTTTTEEEEEEEEETTSC
T ss_pred HHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEecccccCccccCCCcEEEEEECCcCCC
Confidence 443 345578888888765321 121 1125788889999988631 1246677777553
No 46
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.24 E-value=3.2e-10 Score=100.70 Aligned_cols=177 Identities=12% Similarity=0.094 Sum_probs=100.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccc-cc--ccC--------Cchhh-------
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYL-SQ--SID--------PSSHV------- 77 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~-~~--~~~--------~~~~~------- 77 (233)
..+|..++|.|+||+|||||+++++..++...|.+|+|++.|.....-..++ .. +++ .....
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a 279 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMA 279 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 3699999999999999999999999998855688999999873211111111 00 000 00000
Q ss_pred -----hcceEEEEec--CHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHH
Q 041690 78 -----FKLIQMKYVE--DDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITH 150 (233)
Q Consensus 78 -----~~~i~~~~~~--~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 150 (233)
...+.+.... +...++..+..+.. ...|++||||+++.+.... .. ...+ ...+..+...++.
T Consensus 280 ~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~-~~~~~livID~l~~~~~~~----~~--~~~~----~~~i~~i~~~Lk~ 348 (454)
T 2r6a_A 280 MGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQ-ESGLGMIVIDYLQLIQGSG----RS--KENR----QQEVSEISRSLKA 348 (454)
T ss_dssp HHHHHSSCEEEECCTTCCHHHHHHHHHHHHT-TTCCCEEEEECGGGSCCSC----C------C----HHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEccHHHhccCC----CC--CCCH----HHHHHHHHHHHHH
Confidence 0123332221 23444443333221 2349999999999987531 00 0011 1122334455554
Q ss_pred hh-hcCCcEEEEeecCCCCC------chhHH-----HHHHhhccceEEEecC----------CccEEEeeccCcc
Q 041690 151 AN-KKSPCKLLLSDTHLGNS------TRLLY-----IYKRWISSIFTVKGDG----------PGSFLLRNKNYSR 203 (233)
Q Consensus 151 l~-~~~~~vlvi~~~~~~~~------~~~~~-----~~~~~~~~~~~i~~~~----------~~~~~l~~~~~~~ 203 (233)
++ +.+.+++++++.+.... |.... .++++.|.++.+.... ....++.++++.+
T Consensus 349 lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~~~~~~~~~~~~l~i~K~R~G~ 423 (454)
T 2r6a_A 349 LARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNKDSENKNIIEIIIAKQRNGP 423 (454)
T ss_dssp HHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-------CCEEEEEEEEESSSC
T ss_pred HHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccccCcccCCCCeEEEEEecccCCC
Confidence 43 45788888888664311 32111 4678899999998642 1346677777653
No 47
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.23 E-value=9.2e-11 Score=97.52 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=73.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC----------CCeEEEEecCCccccccccccc-ccCCc----hhhhcce
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS----------NANVVFMCNRSRLQSKRPYLSQ-SIDPS----SHVFKLI 81 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~----------g~~v~yi~~e~~l~~~~~~~~~-~~~~~----~~~~~~i 81 (233)
++|..++|+||||||||||+++++..++ .. +.+++|++.|+.......++.. ..... ....+++
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l 106 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGL 106 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCce
Confidence 5999999999999999999999998666 32 4689999977533211111111 11111 1112333
Q ss_pred EEEEe-------cCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHh-hh
Q 041690 82 QMKYV-------EDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHA-NK 153 (233)
Q Consensus 82 ~~~~~-------~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l-~~ 153 (233)
.+... -+...+..+...+ . .|++|||||++++.... ..... .+..++..+..+ ++
T Consensus 107 ~l~~~~~~~~~~ls~g~~~~i~~l~---~-~~~livlDe~~~~~~~d-------~~~~~------~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 107 LIQPLIGSLPNIMAPEWFDGLKRAA---E-GRRLMVLDTLRRFHIEE-------ENASG------PMAQVIGRMEAIAAD 169 (279)
T ss_dssp EECCCTTSCCCTTSHHHHHHHHHHH---T-TCSEEEEECGGGGCCSC-------TTCHH------HHHHHHHHHHHHHHH
T ss_pred EEeecCCCCcccCCHHHHHHHHHhc---C-CCCEEEECCHHHhcCCC-------cCchH------HHHHHHHHHHHHHHH
Confidence 33111 1122333332222 2 29999999999977520 01111 111244445544 35
Q ss_pred cCCcEEEEeecCC
Q 041690 154 KSPCKLLLSDTHL 166 (233)
Q Consensus 154 ~~~~vlvi~~~~~ 166 (233)
.+.+++++++...
T Consensus 170 ~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 170 TGCSIVFLHHASK 182 (279)
T ss_dssp HCCEEEEEEEC--
T ss_pred cCCEEEEEecCCC
Confidence 6888888888754
No 48
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.23 E-value=1.8e-10 Score=103.51 Aligned_cols=173 Identities=5% Similarity=0.021 Sum_probs=97.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccc-cc--ccCCch-----------------
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYL-SQ--SIDPSS----------------- 75 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~-~~--~~~~~~----------------- 75 (233)
..+|..++|.|+||+|||+|+.+++.+++...|.+|+|++.|.....-..++ .. +++...
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 318 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQW 318 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHH
Confidence 4699999999999999999999999999844488999999874221111111 00 111000
Q ss_pred --hh--hcceEEEEe---cCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHH
Q 041690 76 --HV--FKLIQMKYV---EDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAI 148 (233)
Q Consensus 76 --~~--~~~i~~~~~---~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 148 (233)
.. ..++.+... .....+...+..+.. +..+++||||+++.+... .+ ...+.. .+..++..+
T Consensus 319 ~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~-~~~~~lvVID~l~~l~~~----~~---~~~~~~----~~~~~~~~L 386 (503)
T 1q57_A 319 FDELFGNDTFHLYDSFAEAETDRLLAKLAYMRS-GLGCDVIILDHISIVVSA----SG---ESDERK----MIDNLMTKL 386 (503)
T ss_dssp HHHHHTTTCEEEECCC---CHHHHHHHHHHHHH-TTCCSEEEEECTTCCCSC----CS---CCCHHH----HHHHHHHHH
T ss_pred HHHHhccCCEEEECCCCCCCHHHHHHHHHHHHH-hcCCCEEEEccchhcCCC----CC---CCCHHH----HHHHHHHHH
Confidence 00 123333221 122333333332211 334999999999887642 11 111111 122233333
Q ss_pred HH-hhhcCCcEEEEeecCCCC---------Cc-----hhHHHHHHhhccceEEEecC------CccEEEeecc
Q 041690 149 TH-ANKKSPCKLLLSDTHLGN---------ST-----RLLYIYKRWISSIFTVKGDG------PGSFLLRNKN 200 (233)
Q Consensus 149 ~~-l~~~~~~vlvi~~~~~~~---------~~-----~~~~~~~~~~~~~~~i~~~~------~~~~~l~~~~ 200 (233)
+. +++.+.+++++++.+..+ .| ++--.+++..|.++.+.... .+..++.|++
T Consensus 387 k~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~~~~~~~~~l~v~K~R 459 (503)
T 1q57_A 387 KGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNLVLVRILKCR 459 (503)
T ss_dssp HHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSSSSCTTEEEEEEEEET
T ss_pred HHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCcCCCCCeEEEEEEecc
Confidence 33 345588888888877421 11 11225788899999998642 2346667777
No 49
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.21 E-value=1.4e-10 Score=90.03 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
.+|..++|+||||||||||++.++.......|..++|++.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 3689999999999999999999998876556778888863
No 50
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=99.18 E-value=6.8e-10 Score=98.32 Aligned_cols=179 Identities=11% Similarity=0.084 Sum_probs=97.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccc-c--cccCC--------chh--------
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYL-S--QSIDP--------SSH-------- 76 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~-~--~~~~~--------~~~-------- 76 (233)
..+|..++|+|+||+|||+|+.+++.+++...|.+|+|++.|.....-..++ . ..++. .+.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a 276 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDV 276 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHH
Confidence 3699999999999999999999999999855688999999873211111110 0 00100 000
Q ss_pred ---h-hcceEEEEec--CHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHH
Q 041690 77 ---V-FKLIQMKYVE--DDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITH 150 (233)
Q Consensus 77 ---~-~~~i~~~~~~--~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 150 (233)
. ..++.+.... ....+...+..+.. +..+++||||+++.+.... .... ...+. ..+..+...++.
T Consensus 277 ~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~~~-~~~~---~~~r~----~~i~~i~~~Lk~ 347 (444)
T 2q6t_A 277 ASRLSEAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSGPG-SGKS---GENRQ----QEIAAISRGLKA 347 (444)
T ss_dssp HHHHHTSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBCC-----------CHH----HHHHHHHHHHHH
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCCCc-CCCC---CCCHH----HHHHHHHHHHHH
Confidence 0 0123332221 23344433333221 2249999999999987520 0000 01111 122334444444
Q ss_pred h-hhcCCcEEEEeecCCC-----C-CchhH-----HHHHHhhccceEEEecC----------CccEEEeeccCcc
Q 041690 151 A-NKKSPCKLLLSDTHLG-----N-STRLL-----YIYKRWISSIFTVKGDG----------PGSFLLRNKNYSR 203 (233)
Q Consensus 151 l-~~~~~~vlvi~~~~~~-----~-~~~~~-----~~~~~~~~~~~~i~~~~----------~~~~~l~~~~~~~ 203 (233)
+ ++.+.+++++++.+.. + .|... -.++...|.++.+.... .+..++.|+++.+
T Consensus 348 lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r~~~~~~~~~~~~~~~l~i~K~R~g~ 422 (444)
T 2q6t_A 348 LARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPHSEKAGIAEIIVGKQRNGP 422 (444)
T ss_dssp HHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEEGGGTCSSSSCCSEEEEEEEECSSSC
T ss_pred HHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEecccccCCcCCCCCeEEEEEEecCCCC
Confidence 3 3457888888876532 1 12211 13567788888887531 2356677777653
No 51
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.16 E-value=3.1e-10 Score=113.30 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=99.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
++|++++||||+|||||||+.+++.+++ ..|+.++||+.|+.+.... .-..+++. +++.+.+.+..+.-.++.
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~~~-~~g~~~~~i~~e~~~~~~~-~~~~Gv~~-----~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIY-ARKLGVDI-----DNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEECTTSCCCHHH-HHHTTCCG-----GGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEecCCCCCHHH-HHHcCCCH-----HHeEEeCCCcHHHHHHHH
Confidence 5899999999999999999999998877 7799999999886443322 11112222 246666666665444444
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccc-cccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecC--------CC
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQ-ERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTH--------LG 167 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~--------~~ 167 (233)
+.+.. ...+++|||||+.++.+...-. +-++...+-..++.. ..+..+...+++.+.+++++.... .+
T Consensus 1502 ~~~~~-s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~--~~lr~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 1578 (1706)
T 3cmw_A 1502 DALAR-SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS--QAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 1578 (1706)
T ss_dssp HHHHH-HTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHH--HHHHHHHHHHHHHTCEEEEEECBC--------CC
T ss_pred HHHHH-cCCCCEEEEccHHhCCccccccccccccchhHHHHHHH--HHHHHHHHHHHhCCcEEEEeeccccccceecCCC
Confidence 43322 3449999999999999853111 111111111111110 123444455667777777776553 23
Q ss_pred CCchhHHHHHHhhccceEEEe
Q 041690 168 NSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+..-+..++.-|....+.|..
T Consensus 1579 ~~~~~g~al~~~~~~r~~~~~ 1599 (1706)
T 3cmw_A 1579 ETTTGGNALKFYASVRLDIRR 1599 (1706)
T ss_dssp CCBSSCSHHHHHEEEEEEEEE
T ss_pred ccccCcceeeeeeeeeeeeee
Confidence 333345578888888887774
No 52
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.16 E-value=8.2e-11 Score=105.43 Aligned_cols=138 Identities=13% Similarity=0.182 Sum_probs=75.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFAA 98 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 98 (233)
...++|+||||||||+|++.++... +.++++++... +.....+.. ...+..+|..
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~----~~~~i~i~g~~-------~~~~~~g~~--------------~~~v~~lfq~ 118 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA----RVPFITASGSD-------FVEMFVGVG--------------AARVRDLFET 118 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT----TCCEEEEEGGG-------GTSSCTTHH--------------HHHHHHHTTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----CCCEEEEehhH-------HHHhhhhhH--------------HHHHHHHHHH
Confidence 4459999999999999999887643 46788886331 111111100 3456666665
Q ss_pred hcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHH
Q 041690 99 FHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKR 178 (233)
Q Consensus 99 ~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~ 178 (233)
+. ...|+++||||++.+......+ .+..........+++ +..+... .....++++++++.++........+.
T Consensus 119 a~--~~~p~il~IDEId~l~~~r~~~--~~~~~~e~~~~l~~L---L~~Ldg~-~~~~~viviAatn~p~~LD~aLlr~g 190 (499)
T 2dhr_A 119 AK--RHAPCIVFIDEIDAVGRKRGSG--VGGGNDEREQTLNQL---LVEMDGF-EKDTAIVVMAATNRPDILDPALLRPG 190 (499)
T ss_dssp SS--SSSSCEEEEECGGGTCCCSSSS--TTTSSHHHHHHHHHH---HHHGGGC-CSSCCCEEEECCSCGGGSCTTTSSTT
T ss_pred HH--hcCCCEEEEehHHHHHHhhccC--cCCCcHHHHHHHHHH---HHHhccc-ccCccEEEEEecCChhhcCccccccc
Confidence 44 3348999999999987632100 001111111222222 2222111 23345777888877643222223334
Q ss_pred hhccceEEEec
Q 041690 179 WISSIFTVKGD 189 (233)
Q Consensus 179 ~~~~~~~i~~~ 189 (233)
+|+..+.++..
T Consensus 191 Rfdr~i~i~~P 201 (499)
T 2dhr_A 191 RFDRQIAIDAP 201 (499)
T ss_dssp SSCCEEECCCC
T ss_pred ccceEEecCCC
Confidence 67777777653
No 53
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.15 E-value=3.3e-10 Score=95.60 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
.+|+.++|+||||||||+|+.+++.. .|.+++|++.
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~----~G~~VlyIs~ 156 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA----LGGKDKYATV 156 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH----HHTTSCCEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh----CCCCEEEEEe
Confidence 46788999999999999999999875 3567899985
No 54
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.15 E-value=3.7e-10 Score=102.01 Aligned_cols=155 Identities=12% Similarity=0.139 Sum_probs=89.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccc-cccCCchhhhc--ceEEE-----Eec
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLS-QSIDPSSHVFK--LIQMK-----YVE 87 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~-~~~~~~~~~~~--~i~~~-----~~~ 87 (233)
..+|++++|.||||||||||+++++.... ..|.+++|++.++....-..... .+++ ...... .+.+. .++
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-~~G~~vi~~~~ee~~~~l~~~~~~~g~~-~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENAC-ANKERAILFAYEESRAQLLRNAYSWGMD-FEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHH-TTTCCEEEEESSSCHHHHHHHHHTTSCC-HHHHHHTTSEEECCCCGGGSC
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH-hCCCCEEEEEEeCCHHHHHHHHHHcCCC-HHHHHhCCCEEEEEeccccCC
Confidence 36999999999999999999999998877 46778889876632111000000 0111 111111 22221 123
Q ss_pred CHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCC
Q 041690 88 DDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLG 167 (233)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~ 167 (233)
..+..+.+++.+. ...|++||+|+++.+... .+. ...+ ..++++++.+++.|.+++++++....
T Consensus 356 ~g~~q~~~~a~~l--~~~p~llilDp~~~Ld~~--------~~~-~~~~-----~~i~~ll~~l~~~g~tvilvsh~~~~ 419 (525)
T 1tf7_A 356 LEDHLQIIKSEIN--DFKPARIAIDSLSALARG--------VSN-NAFR-----QFVIGVTGYAKQEEITGLFTNTSDQF 419 (525)
T ss_dssp HHHHHHHHHHHHH--TTCCSEEEEECHHHHTSS--------SCH-HHHH-----HHHHHHHHHHHHTTCEEEEEEECSSS
T ss_pred HHHHHHHHHHHHH--hhCCCEEEEcChHHHHhh--------CCh-HHHH-----HHHHHHHHHHHhCCCEEEEEECcccc
Confidence 3455555666554 334999999954444431 011 1111 12566677777788899988887522
Q ss_pred CCc-hh-HHHHHHhhccceEEEe
Q 041690 168 NST-RL-LYIYKRWISSIFTVKG 188 (233)
Q Consensus 168 ~~~-~~-~~~~~~~~~~~~~i~~ 188 (233)
... .. ...+.++.|.++.+..
T Consensus 420 ~~~~~~~~~~l~~~~D~vi~L~~ 442 (525)
T 1tf7_A 420 MGAHSITDSHISTITDTIILLQY 442 (525)
T ss_dssp SCCCSSCSSCCTTTCSEEEEEEE
T ss_pred cCcccccCcccceeeeEEEEEEE
Confidence 111 00 0145678899997765
No 55
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.14 E-value=7.9e-10 Score=83.55 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=33.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
+|..+.|+||+|+|||+|++.++.... ..|.+++|++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-EAGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-TTTCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-hcCCcEEEEcHH
Confidence 789999999999999999999998777 457779999743
No 56
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.14 E-value=3.8e-10 Score=94.68 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC---CCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS---NANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIK 93 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~---g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 93 (233)
.++..++|+||||||||++++.++..+.... ..++++++.. .......+.. ...+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-------~l~~~~~g~~--------------~~~~~ 123 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD-------DLVGQYIGHT--------------APKTK 123 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG-------GTCCSSTTCH--------------HHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH-------Hhhhhccccc--------------HHHHH
Confidence 4667899999999999999999988775221 3367777522 1112222211 34455
Q ss_pred HHHHHhcccCCCCcEEEEeCCCccccc
Q 041690 94 KYFAAFHQHDKIPTAVVVDDFGDLFDD 120 (233)
Q Consensus 94 ~~~~~~~~~~~~p~iIvIDei~~~~~~ 120 (233)
..+..+. +++|||||++.+...
T Consensus 124 ~~~~~~~-----~~vl~iDEid~l~~~ 145 (309)
T 3syl_A 124 EVLKRAM-----GGVLFIDEAYYLYRP 145 (309)
T ss_dssp HHHHHHT-----TSEEEEETGGGSCCC
T ss_pred HHHHhcC-----CCEEEEEChhhhccC
Confidence 6665443 789999999999863
No 57
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=99.13 E-value=1.4e-09 Score=96.28 Aligned_cols=175 Identities=13% Similarity=0.042 Sum_probs=98.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccc-c--c------------cCCch-----
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLS-Q--S------------IDPSS----- 75 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~-~--~------------~~~~~----- 75 (233)
..+|..++|.|+||+|||+|+.+++.+++ ..|.+|+|++.|.....-..++. . + +...+
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a-~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~ 272 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMS-DNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLS 272 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHH-HTTCEEEEECSSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHH-HcCCEEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHH
Confidence 36999999999999999999999999998 45889999998732211111100 0 0 11100
Q ss_pred ----hh-hcceEEEEec--CHHHHHHHHHHhcccCCCCc--EEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHH
Q 041690 76 ----HV-FKLIQMKYVE--DDEEIKKYFAAFHQHDKIPT--AVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYN 146 (233)
Q Consensus 76 ----~~-~~~i~~~~~~--~~~~l~~~~~~~~~~~~~p~--iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 146 (233)
.. ..++.+.... ....++..+..+.. +..++ +||||.++.+.... . ...+.. .+..+..
T Consensus 273 ~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~-~~~~~~~lIVID~Lq~~~~~~----~---~~~r~~----~i~~i~~ 340 (444)
T 3bgw_A 273 MAIGEISNSNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEPAK----A---NDSRTN----QISQISR 340 (444)
T ss_dssp HHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHH-HSCSSCEEEEEECSTTSBCSC----S---SSCHHH----HHHHHHH
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEecHHhccCCC----C---CCCHHH----HHHHHHH
Confidence 00 1133332211 23344444433322 22488 99999999887521 0 111111 2222333
Q ss_pred HHHH-hhhcCCcEEEEeecCCC-----C-CchhH-----HHHHHhhccceEEEecC----------CccEEEeeccCcc
Q 041690 147 AITH-ANKKSPCKLLLSDTHLG-----N-STRLL-----YIYKRWISSIFTVKGDG----------PGSFLLRNKNYSR 203 (233)
Q Consensus 147 ~~~~-l~~~~~~vlvi~~~~~~-----~-~~~~~-----~~~~~~~~~~~~i~~~~----------~~~~~l~~~~~~~ 203 (233)
.++. +++.+.+++++++.++. + .|... -.+++..|.++.+..+. ....++.|+++.+
T Consensus 341 ~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~~~~~~~~~~~~~l~i~K~R~G~ 419 (444)
T 3bgw_A 341 DLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHRDGP 419 (444)
T ss_dssp HHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGGGTCTTCSSTTEEEEEEEEESSSC
T ss_pred HHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEeccccccccccCCCeEEEEEEcccCCC
Confidence 4443 34558888888886532 1 12211 14788899999887631 1246677777653
No 58
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.11 E-value=1.2e-10 Score=110.19 Aligned_cols=116 Identities=18% Similarity=0.267 Sum_probs=71.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..++|+||||||||||++.++. ..+..+++++.. .......+.. ...+..+|
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~----~l~~~~i~v~~~-------~l~~~~~g~~--------------~~~l~~vf 290 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVAN----ETGAFFFLINGP-------EIMSKLAGES--------------ESNLRKAF 290 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHH----TTTCEEEEEEHH-------HHSSSSTTHH--------------HHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHH----HcCCcEEEEEch-------HhhhhhhhhH--------------HHHHHHHH
Confidence 5788999999999999999997765 345667777522 1111111111 45666777
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCC
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGN 168 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~ 168 (233)
..+.. ..|+++|+||++.+... +.........++...++.+++. ... ...++++++++.++
T Consensus 291 ~~a~~--~~p~il~iDEid~l~~~-----~~~~~~~~~~~~~~~Ll~ll~g---~~~-~~~v~vI~atn~~~ 351 (806)
T 1ypw_A 291 EEAEK--NAPAIIFIDELDAIAPK-----REKTHGEVERRIVSQLLTLMDG---LKQ-RAHVIVMAATNRPN 351 (806)
T ss_dssp HHHHH--HCSEEEEEESGGGTSCT-----TSCCCSHHHHHHHHHHHHHHHS---SCT-TSCCEEEEECSCTT
T ss_pred HHHHh--cCCcEEEeccHHHhhhc-----cccccchHHHHHHHHHHHHhhh---hcc-cccEEEecccCCch
Confidence 76643 23899999999999873 2223333444445444444332 322 34566677776653
No 59
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.08 E-value=2.8e-10 Score=93.10 Aligned_cols=138 Identities=12% Similarity=0.168 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFAA 98 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 98 (233)
...++|+||||||||||++.++... +...++++... ......+. ....+..+|..
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~----~~~~i~~~~~~-------~~~~~~~~--------------~~~~i~~~~~~ 103 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA----RVPFITASGSD-------FVEMFVGV--------------GAARVRDLFET 103 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEHHH-------HHHSCTTH--------------HHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh----CCCEEEeeHHH-------HHHHHhhH--------------HHHHHHHHHHH
Confidence 3449999999999999999887643 35566665221 11110000 03345666665
Q ss_pred hcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHH
Q 041690 99 FHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKR 178 (233)
Q Consensus 99 ~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~ 178 (233)
+. ...|+++++||++.+....... .............. ++..+... .....+++++.++.++........+.
T Consensus 104 ~~--~~~~~i~~~Deid~l~~~~~~~--~~~~~~~~~~~~~~---ll~~l~g~-~~~~~~i~~a~t~~p~~ld~~l~r~~ 175 (254)
T 1ixz_A 104 AK--RHAPCIVFIDEIDAVGRKRGSG--VGGGNDEREQTLNQ---LLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPG 175 (254)
T ss_dssp HT--TSSSEEEEEETHHHHHC-----------CHHHHHHHHH---HHHHHHTC-CTTCCEEEEEEESCGGGSCGGGGSTT
T ss_pred HH--hcCCeEEEehhhhhhhcccCcc--ccccchHHHHHHHH---HHHHHhCC-CCCCCEEEEEccCCchhCCHHHcCCC
Confidence 54 2348999999998886531100 00011111122222 22222211 23345677777776643332223333
Q ss_pred hhccceEEEec
Q 041690 179 WISSIFTVKGD 189 (233)
Q Consensus 179 ~~~~~~~i~~~ 189 (233)
+++..+.++..
T Consensus 176 rf~~~i~i~~p 186 (254)
T 1ixz_A 176 RFDRQIAIDAP 186 (254)
T ss_dssp SSCEEEECCSC
T ss_pred cCCeEEeeCCc
Confidence 67777777653
No 60
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.07 E-value=5.3e-10 Score=89.81 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
++..++|+||||||||++++.++.... ..+.++.|++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~-~~~~~~~~~~~ 88 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN-ELERRSFYIPL 88 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEEH
Confidence 678999999999999999999998877 55788999873
No 61
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.06 E-value=1.9e-09 Score=97.40 Aligned_cols=157 Identities=13% Similarity=0.120 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccC-Cchhhh--cceEEEEe------
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSID-PSSHVF--KLIQMKYV------ 86 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~-~~~~~~--~~i~~~~~------ 86 (233)
.++|+.++|.||||||||||+++++.......+...+|++.++.-...... ...++ ..+... .++.....
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~-~~~~g~~~q~~~~~~~l~~~~~~~~~~~ 114 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKN-ARSFGWDLAKLVDEGKLFILDASPDPEG 114 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHH-HGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHH-HHHcCCChHHhhccCcEEEEecCcccch
Confidence 369999999999999999999997544443435678999876411000000 00111 001000 12222111
Q ss_pred ----cC---HHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEE
Q 041690 87 ----ED---DEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKL 159 (233)
Q Consensus 87 ----~~---~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vl 159 (233)
.. ..........+. ...|++|+|||+++..+. ...+...+.. ++++++.+++.|.+++
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS--~g~~~~lilDe~t~~~~~--------~~lD~~~~~~-----l~~ll~~l~~~g~tvl 179 (525)
T 1tf7_A 115 QEVVGGFDLSALIERINYAIQ--KYRARRVSIDSVTSVFQQ--------YDASSVVRRE-----LFRLVARLKQIGATTV 179 (525)
T ss_dssp CSCCSSHHHHHHHHHHHHHHH--HHTCSEEEEECSTTTSTT--------TCCHHHHHHH-----HHHHHHHHHHHTCEEE
T ss_pred hhhhcccCHHHHHHHHHHHHH--HcCCCEEEECCHHHHHHh--------cCCHHHHHHH-----HHHHHHHHHHCCCEEE
Confidence 11 112222222222 123899999999998763 1111111112 5666777777788888
Q ss_pred EEeecCCCCCchh-HHHHHHhhccceEEEe
Q 041690 160 LLSDTHLGNSTRL-LYIYKRWISSIFTVKG 188 (233)
Q Consensus 160 vi~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 188 (233)
++++......+.. ..+.+.+.|.++.+..
T Consensus 180 ~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 180 MTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EEecCCCCccccccccceeeeeeEEEEEEE
Confidence 8877654321111 1123556888888876
No 62
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.05 E-value=8.5e-11 Score=104.47 Aligned_cols=79 Identities=23% Similarity=0.237 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
++..++|+||||||||++|+.++.... . ...+++++.. .......+. .+.+.+.|.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~-~-~~~~~~~~~~-------~~~~~~~~~---------------~~~~~~~f~ 117 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG-S-KVPFCPMVGS-------EVYSTEIKK---------------TEVLMENFR 117 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC-T-TSCEEEEEGG-------GGCCSSSCH---------------HHHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC-C-CceEEEEeHH-------HHHHHhhhh---------------hHHHHHHHH
Confidence 667899999999999999998887653 1 2567777522 222222211 334777887
Q ss_pred Hhcc-cCCCCcEEEEeCCCccccc
Q 041690 98 AFHQ-HDKIPTAVVVDDFGDLFDD 120 (233)
Q Consensus 98 ~~~~-~~~~p~iIvIDei~~~~~~ 120 (233)
.+.. ....|++|||||++++...
T Consensus 118 ~a~~~~~~~~~il~iDEid~l~~~ 141 (456)
T 2c9o_A 118 RAIGLRIKETKEVYEGEVTELTPC 141 (456)
T ss_dssp HTEEEEEEEEEEEEEEEEEEEEEC
T ss_pred HHHhhhhcCCcEEEEechhhcccc
Confidence 7611 1233999999999999985
No 63
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=99.04 E-value=2e-09 Score=86.64 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=34.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+|..++++||||+||||++++++.... ..|.+|+++...
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~-~~g~kVli~~~~ 49 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE-YADVKYLVFKPK 49 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEEec
Confidence 5789999999999999999999999888 668889888533
No 64
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.03 E-value=8.1e-12 Score=118.14 Aligned_cols=137 Identities=17% Similarity=0.257 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.++..++|+||||||||+|++.++.... ..+++++. ......+.+.. ...+..+|
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~----~~~i~v~~-------~~l~~~~~g~~--------------~~~i~~~f 563 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKG-------PELLTMWFGES--------------EANVREIF 563 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHT----CCCCCCCC-------SSSTTCCTTTS--------------SHHHHHHH
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhC----CCEEEEec-------hHhhhhhcCcc--------------HHHHHHHH
Confidence 4788899999999999999998887553 44555532 11122222221 45677777
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcc---hhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPR---GRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLL 173 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~ 173 (233)
..+... .|++|||||++.+... +.+... ....+++.+|+..++.+ .....+++++++|.++.....
T Consensus 564 ~~a~~~--~p~vl~iDEid~l~~~-----r~~~~~~~~~~~~~v~~~LL~~ld~~----~~~~~v~vI~tTN~~~~ld~a 632 (806)
T 1ypw_A 564 DKARQA--APCVLFFDELDSIAKA-----RGGNIGDGGGAADRVINQILTEMDGM----STKKNVFIIGATNRPDIIDPA 632 (806)
T ss_dssp HHHHHH--CSBCCCCSSHHHHCCT-----TTTCCSHHHHHHHHHHHHHHTTCC----------CCBCCCCCBSCGGGSCT
T ss_pred HHHHhc--CCeEEEEEChhhhhhh-----ccCCCCCcchhHHHHHHHHHHHHhcc----cccCCeEEEEecCCcccCCHH
Confidence 776532 3899999999999874 222211 12233344444433333 123457788888876432222
Q ss_pred HHHHHhhccceEEEec
Q 041690 174 YIYKRWISSIFTVKGD 189 (233)
Q Consensus 174 ~~~~~~~~~~~~i~~~ 189 (233)
..-..+|+..++++..
T Consensus 633 llrpgRf~~~i~~~~p 648 (806)
T 1ypw_A 633 ILRPGRLDQLIYIPLP 648 (806)
T ss_dssp TSSGGGTTSCCCCCCC
T ss_pred HhCccccCceeecCCC
Confidence 1212367777777653
No 65
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.02 E-value=9.8e-10 Score=91.15 Aligned_cols=137 Identities=14% Similarity=0.182 Sum_probs=71.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHHHh
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFAAF 99 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 99 (233)
..++|+||||||||||++.++... +...++++... ......+. ....+..++..+
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~----~~~~i~~~~~~-------~~~~~~~~--------------~~~~i~~~~~~~ 128 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA----RVPFITASGSD-------FVEMFVGV--------------GAARVRDLFETA 128 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEHHH-------HHHSTTTH--------------HHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHHc----CCCEEEecHHH-------HHHHHhhH--------------HHHHHHHHHHHH
Confidence 349999999999999999887643 34566665221 11100000 033455666655
Q ss_pred cccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHh
Q 041690 100 HQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRW 179 (233)
Q Consensus 100 ~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~ 179 (233)
. ...|+++++||++.+....... ....... ....+..++..+... .....+++++.++.++........+.+
T Consensus 129 ~--~~~~~i~~iDeid~l~~~~~~~--~~~~~~~---~~~~~~~ll~~lsgg-~~~~~~i~~a~t~~p~~ld~~l~r~~r 200 (278)
T 1iy2_A 129 K--RHAPCIVFIDEIDAVGRKRGSG--VGGGNDE---REQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGR 200 (278)
T ss_dssp H--TSCSEEEEEETHHHHHCC----------CHH---HHHHHHHHHHHHTTC-CTTCCEEEEEEESCTTSSCHHHHSTTS
T ss_pred H--hcCCcEEehhhhHhhhcccccc--cCCcchH---HHHHHHHHHHHHhCC-CCCCCEEEEEecCCchhCCHhHcCCCc
Confidence 4 2348999999998876531100 0000111 111122222222111 223456777777777554433233346
Q ss_pred hccceEEEec
Q 041690 180 ISSIFTVKGD 189 (233)
Q Consensus 180 ~~~~~~i~~~ 189 (233)
++..+.++..
T Consensus 201 f~~~i~i~~p 210 (278)
T 1iy2_A 201 FDRQIAIDAP 210 (278)
T ss_dssp SCCEEECCCC
T ss_pred CCeEEEeCCc
Confidence 7888887754
No 66
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.02 E-value=2.4e-09 Score=90.67 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
.+..++|+||||||||+|++.++.... ..+.+++|++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~-~~~~~~~~i~~ 73 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK-KRGYRVIYSSA 73 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEH
Confidence 457899999999999999999998776 44788999963
No 67
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.00 E-value=7.8e-10 Score=91.91 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 699999999999999999999776543
No 68
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.00 E-value=1.9e-12 Score=106.80 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
.+..++|+||||||||++++.++.... .++++++... +.....+.. ...++.+|.
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~v~~~~-------~~~~~~~~~--------------~~~~~~~~~ 97 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEAH----VPFFSMGGSS-------FIEMFVGLG--------------ASRVRDLFE 97 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHHT----CCCCCCCSCT-------TTTSCSSSC--------------SSSSSTTHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC----CCEEEechHH-------HHHhhcchH--------------HHHHHHHHH
Confidence 355699999999999999998887543 4455553221 111111110 111222333
Q ss_pred HhcccCCCCcEEEEeCCCccccc
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFDD 120 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~~ 120 (233)
.+. ...|++|||||++.+...
T Consensus 98 ~a~--~~~~~vl~iDEid~l~~~ 118 (268)
T 2r62_A 98 TAK--KQAPSIIFIDEIDAIGKS 118 (268)
T ss_dssp HHH--HSCSCEEEESCGGGTTC-
T ss_pred HHH--hcCCeEEEEeChhhhccc
Confidence 333 223899999999998764
No 69
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.99 E-value=6.1e-10 Score=92.04 Aligned_cols=78 Identities=31% Similarity=0.376 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
.+...++|+||||||||++|+.++... +.+++++..-. .. .+.... .....+..++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~----~~~~~~i~~~~------~~----~g~~~~----------~~~~~~~~~~ 117 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES----NFPFIKICSPD------KM----IGFSET----------AKCQAMKKIF 117 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH----TCSEEEEECGG------GC----TTCCHH----------HHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh----CCCEEEEeCHH------Hh----cCCchH----------HHHHHHHHHH
Confidence 456789999999999999999887753 45677764211 11 111100 0023555666
Q ss_pred HHhcccCCCCcEEEEeCCCccccc
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDD 120 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~ 120 (233)
..+. ...+.+|||||++.++..
T Consensus 118 ~~~~--~~~~~vl~iDEid~l~~~ 139 (272)
T 1d2n_A 118 DDAY--KSQLSCVVVDDIERLLDY 139 (272)
T ss_dssp HHHH--TSSEEEEEECCHHHHTTC
T ss_pred HHHH--hcCCcEEEEEChhhhhcc
Confidence 6543 233899999999998763
No 70
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.97 E-value=8.3e-10 Score=95.00 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=40.6
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhc-CCcEEEEeecCCCCCchhHHHHHHhhccce
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKK-SPCKLLLSDTHLGNSTRLLYIYKRWISSIF 184 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~ 184 (233)
|+++++||+++-++. ..... ++++++.++++ |.+++++++.. ....++.++++
T Consensus 182 P~lLLlDEPTs~LD~-------------~~~~~-----i~~lL~~l~~~~g~Tii~vTHdl--------~~~~~~aDrv~ 235 (366)
T 3tui_C 182 PKVLLCDQATSALDP-------------ATTRS-----ILELLKDINRRLGLTILLITHEM--------DVVKRICDCVA 235 (366)
T ss_dssp CSEEEEESTTTTSCH-------------HHHHH-----HHHHHHHHHHHSCCEEEEEESCH--------HHHHHHCSEEE
T ss_pred CCEEEEECCCccCCH-------------HHHHH-----HHHHHHHHHHhCCCEEEEEecCH--------HHHHHhCCEEE
Confidence 999999999999984 11112 66777776554 78888887642 25677788888
Q ss_pred EEEe
Q 041690 185 TVKG 188 (233)
Q Consensus 185 ~i~~ 188 (233)
.+..
T Consensus 236 vl~~ 239 (366)
T 3tui_C 236 VISN 239 (366)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8774
No 71
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.96 E-value=1.5e-09 Score=94.00 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=25.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.++|..+.|.||+|||||||++.++....
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 37999999999999999999998875443
No 72
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.96 E-value=2.2e-09 Score=91.61 Aligned_cols=41 Identities=17% Similarity=0.369 Sum_probs=38.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRS 58 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~ 58 (233)
.+|..++|.|+||+|||+|+.+++..++ ..|.+|+|++.|.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a-~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSAL-NDDRGVAVFSLEM 84 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHH-HTTCEEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCCC
Confidence 6999999999999999999999999998 5789999999873
No 73
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.95 E-value=1.1e-09 Score=90.03 Aligned_cols=144 Identities=8% Similarity=0.024 Sum_probs=79.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-----CeEEEEecCCccccc---cccccccc---------CCc-----
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSN-----ANVVFMCNRSRLQSK---RPYLSQSI---------DPS----- 74 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-----~~v~yi~~e~~l~~~---~~~~~~~~---------~~~----- 74 (233)
++|..+.|.||+|||||||++.++.......| ..+.|+..+..+... .+.+.... ...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 108 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV 108 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHH
Confidence 69999999999999999999977654432212 346677654222110 00000000 000
Q ss_pred -hhhhcceEE--------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHH
Q 041690 75 -SHVFKLIQM--------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCY 145 (233)
Q Consensus 75 -~~~~~~i~~--------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 145 (233)
..+++.+.+ ..++.++..+-.++.+-.. .|+++++||+++-++. ..+.. ++
T Consensus 109 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~-------------~~~~~-----l~ 168 (253)
T 2nq2_C 109 AMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS--ECKLILLDEPTSALDL-------------ANQDI-----VL 168 (253)
T ss_dssp HHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT--TCSEEEESSSSTTSCH-------------HHHHH-----HH
T ss_pred HHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCH-------------HHHHH-----HH
Confidence 001111111 1123334444444433322 2999999999999984 11112 55
Q ss_pred HHHHHhhhc-CCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 146 NAITHANKK-SPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 146 ~~~~~l~~~-~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+.+..++++ +.+++++++.. ....++.+.++.+..
T Consensus 169 ~~l~~l~~~~g~tvi~vtHd~--------~~~~~~~d~v~~l~~ 204 (253)
T 2nq2_C 169 SLLIDLAQSQNMTVVFTTHQP--------NQVVAIANKTLLLNK 204 (253)
T ss_dssp HHHHHHHHTSCCEEEEEESCH--------HHHHHHCSEEEEEET
T ss_pred HHHHHHHHhcCCEEEEEecCH--------HHHHHhCCEEEEEeC
Confidence 666666555 77777776531 145677888888863
No 74
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.95 E-value=5.2e-09 Score=88.56 Aligned_cols=93 Identities=9% Similarity=0.021 Sum_probs=56.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC------CCeEEEEecCCccccccc----ccccccCCchhhhcceEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS------NANVVFMCNRSRLQSKRP----YLSQSIDPSSHVFKLIQMKYV 86 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~------g~~v~yi~~e~~l~~~~~----~~~~~~~~~~~~~~~i~~~~~ 86 (233)
.++..++|+||||||||++++.++..+.... ...++||...... .... .+.+..+. .....
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~-t~~~~~~~I~~~L~g~--------~~~~~ 113 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA-GMDALYEKIWFAISKE--------NLCGD 113 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC---HHHHHHHHHHHSCC--------C--CC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC-CHHHHHHHHHHHhcCC--------CCCch
Confidence 4788999999999999999999998775321 2356777643210 1000 11111111 01112
Q ss_pred cCHHHHHHHHHHhcccCCCCcEEEEeCCCccc
Q 041690 87 EDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLF 118 (233)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~ 118 (233)
...+.+..+|..+......+.+|++||++.+.
T Consensus 114 ~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 114 ISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp CCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 23567777777642223348899999999988
No 75
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.94 E-value=9.1e-10 Score=90.60 Aligned_cols=28 Identities=29% Similarity=0.197 Sum_probs=24.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++|..+.|.||+|||||||++.++...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3799999999999999999999776543
No 76
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.93 E-value=8.2e-10 Score=91.37 Aligned_cols=76 Identities=8% Similarity=0.058 Sum_probs=46.8
Q ss_pred cCHHHHHHHHHHhccc----CCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcC-CcEEEE
Q 041690 87 EDDEEIKKYFAAFHQH----DKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKS-PCKLLL 161 (233)
Q Consensus 87 ~~~~~l~~~~~~~~~~----~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~vlvi 161 (233)
+.++..+-.++.+-.. +..|+++++||+++-++. ..+.. +++.+..+++++ .+++++
T Consensus 143 SgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~-------------~~~~~-----i~~~l~~l~~~~~~tvi~v 204 (266)
T 4g1u_C 143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDL-------------YHQQH-----TLRLLRQLTRQEPLAVCCV 204 (266)
T ss_dssp CHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCH-------------HHHHH-----HHHHHHHHHHHSSEEEEEE
T ss_pred CHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCH-------------HHHHH-----HHHHHHHHHHcCCCEEEEE
Confidence 3344555455544332 113999999999999984 11212 666777766654 466666
Q ss_pred eecCCCCCchhHHHHHHhhccceEEEe
Q 041690 162 SDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
++.- ....++.++++.+..
T Consensus 205 tHdl--------~~~~~~~d~v~vl~~ 223 (266)
T 4g1u_C 205 LHDL--------NLAALYADRIMLLAQ 223 (266)
T ss_dssp CSCH--------HHHHHHCSEEEEEET
T ss_pred EcCH--------HHHHHhCCEEEEEEC
Confidence 5531 156778898888874
No 77
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.92 E-value=3.7e-09 Score=90.83 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=25.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.++|..+.|.||+|||||||++.++....
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 37999999999999999999998875443
No 78
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.91 E-value=1.6e-09 Score=89.43 Aligned_cols=57 Identities=7% Similarity=0.168 Sum_probs=39.8
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++. ..+.. +++.+..+++++.+++++++.. ....++.+.++.
T Consensus 178 p~lllLDEPts~LD~-------------~~~~~-----~~~~l~~l~~~g~tvi~vtHd~--------~~~~~~~d~v~~ 231 (263)
T 2olj_A 178 PKIMLFDEPTSALDP-------------EMVGE-----VLSVMKQLANEGMTMVVVTHEM--------GFAREVGDRVLF 231 (263)
T ss_dssp CSEEEEESTTTTSCH-------------HHHHH-----HHHHHHHHHHTTCEEEEECSCH--------HHHHHHCSEEEE
T ss_pred CCEEEEeCCcccCCH-------------HHHHH-----HHHHHHHHHhCCCEEEEEcCCH--------HHHHHhCCEEEE
Confidence 999999999999984 11222 5666666666677777775531 156778888888
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+..
T Consensus 232 l~~ 234 (263)
T 2olj_A 232 MDG 234 (263)
T ss_dssp EET
T ss_pred EEC
Confidence 874
No 79
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.91 E-value=3.6e-09 Score=91.03 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++|..+.|.||+|||||||++.++...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3799999999999999999999887543
No 80
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.91 E-value=4.7e-09 Score=80.92 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=50.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc------CCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ------SNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDE 90 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~------~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 90 (233)
..+..++|+||||||||++++.++...... .+.++++++... ... ...... ....
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~-----------~~~~ 101 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA-------LVA-GAKYRG-----------EFEE 101 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH-------HHT-TTCSHH-----------HHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH-------Hhc-cCCccc-----------cHHH
Confidence 356789999999999999999998876521 356777775221 000 000000 0023
Q ss_pred HHHHHHHHhcccCCCCcEEEEeCCCcccc
Q 041690 91 EIKKYFAAFHQHDKIPTAVVVDDFGDLFD 119 (233)
Q Consensus 91 ~l~~~~~~~~~~~~~p~iIvIDei~~~~~ 119 (233)
.+..++..+.. ...+.+|+|||++.+..
T Consensus 102 ~~~~~~~~~~~-~~~~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 102 RLKGVLNDLAK-QEGNVILFIDELHTMVG 129 (195)
T ss_dssp HHHHHHHHHHH-STTTEEEEEETGGGGTT
T ss_pred HHHHHHHHHhh-cCCCeEEEEeCHHHHhc
Confidence 44455543322 23378999999999875
No 81
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.91 E-value=2.7e-09 Score=91.60 Aligned_cols=27 Identities=30% Similarity=0.251 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 699999999999999999999887543
No 82
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.91 E-value=3.3e-09 Score=81.66 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc------CCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ------SNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDE 90 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~------~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 90 (233)
..+..++|+||||||||++++.++...... .+..+++++... .... ..... ....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~-----------~~~~ 101 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSS-------LIAG-AKYRG-----------DFEE 101 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHH-------HHHH-CCSHH-----------HHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHH-------hhcC-CCchh-----------HHHH
Confidence 356789999999999999999999877521 256677764211 0000 00000 0022
Q ss_pred HHHHHHHHhcccCCCCcEEEEeCCCcccc
Q 041690 91 EIKKYFAAFHQHDKIPTAVVVDDFGDLFD 119 (233)
Q Consensus 91 ~l~~~~~~~~~~~~~p~iIvIDei~~~~~ 119 (233)
.+..++..+... ..+.+|||||++.+..
T Consensus 102 ~~~~~~~~~~~~-~~~~vl~iDe~~~l~~ 129 (187)
T 2p65_A 102 RLKSILKEVQDA-EGQVVMFIDEIHTVVG 129 (187)
T ss_dssp HHHHHHHHHHHT-TTSEEEEETTGGGGSS
T ss_pred HHHHHHHHHHhc-CCceEEEEeCHHHhcc
Confidence 344444444322 2378999999999875
No 83
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.90 E-value=9e-09 Score=91.01 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCeEEEEec
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQS-NANVVFMCN 56 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~-g~~v~yi~~ 56 (233)
+..++|+||||||||+|++.++....... +.+++|++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 57899999999999999999988776332 778999873
No 84
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.89 E-value=3.5e-09 Score=86.30 Aligned_cols=57 Identities=9% Similarity=0.009 Sum_probs=39.3
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhh-cCCcEEEEeecCCCCCchhHHHHHHhhccce
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANK-KSPCKLLLSDTHLGNSTRLLYIYKRWISSIF 184 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~-~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~ 184 (233)
|+++++||+++-++. ..+.. +++.+..+++ .+.+++++++.. .....+.+.++
T Consensus 145 p~lllLDEPts~LD~-------------~~~~~-----~~~~l~~l~~~~g~tvi~vtHd~--------~~~~~~~d~i~ 198 (240)
T 2onk_A 145 PRLLLLDEPLSAVDL-------------KTKGV-----LMEELRFVQREFDVPILHVTHDL--------IEAAMLADEVA 198 (240)
T ss_dssp CSSBEEESTTSSCCH-------------HHHHH-----HHHHHHHHHHHHTCCEEEEESCH--------HHHHHHCSEEE
T ss_pred CCEEEEeCCcccCCH-------------HHHHH-----HHHHHHHHHHhcCCEEEEEeCCH--------HHHHHhCCEEE
Confidence 999999999999984 11212 5666666654 377888876531 14567788888
Q ss_pred EEEe
Q 041690 185 TVKG 188 (233)
Q Consensus 185 ~i~~ 188 (233)
.+..
T Consensus 199 ~l~~ 202 (240)
T 2onk_A 199 VMLN 202 (240)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8874
No 85
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.89 E-value=4e-09 Score=90.83 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++|..+.|.||+|||||||++.++...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3799999999999999999999887543
No 86
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.89 E-value=3.8e-09 Score=90.78 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=24.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++|..+.|.||+|||||||++.++...
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3799999999999999999999887543
No 87
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.88 E-value=2.4e-09 Score=86.94 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=24.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
..+|..+.|.||+|||||||++.++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3799999999999999999999776543
No 88
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.88 E-value=5.5e-09 Score=90.34 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 699999999999999999999887543
No 89
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.88 E-value=3.9e-09 Score=85.97 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=39.9
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++. ..+.. +++.+..+++.+.+++++++.. ....++.+.++.
T Consensus 158 p~lllLDEPts~LD~-------------~~~~~-----l~~~l~~~~~~g~tvi~vtHd~--------~~~~~~~d~v~~ 211 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAP-------------ILVSE-----VFEVIQKINQEGTTILLVEQNA--------LGALKVAHYGYV 211 (240)
T ss_dssp CSEEEEECTTTTCCH-------------HHHHH-----HHHHHHHHHHTTCCEEEEESCH--------HHHHHHCSEEEE
T ss_pred CCEEEEcCCcccCCH-------------HHHHH-----HHHHHHHHHHCCCEEEEEecCH--------HHHHHhCCEEEE
Confidence 999999999999984 11212 5666666655677888876531 145678888888
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+..
T Consensus 212 l~~ 214 (240)
T 1ji0_A 212 LET 214 (240)
T ss_dssp EET
T ss_pred EEC
Confidence 874
No 90
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.88 E-value=5.1e-09 Score=84.42 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 699999999999999999999776443
No 91
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.86 E-value=4.6e-09 Score=90.76 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=24.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++|..+.|.||+|||||||++.++...
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3799999999999999999999877543
No 92
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.84 E-value=3.9e-09 Score=87.07 Aligned_cols=57 Identities=9% Similarity=0.163 Sum_probs=40.0
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++. ..+.. +++.+..++++|.+++++++.. ....++.+.++.
T Consensus 172 p~lllLDEPts~LD~-------------~~~~~-----~~~~l~~l~~~g~tvi~vtHd~--------~~~~~~~d~v~~ 225 (262)
T 1b0u_A 172 PDVLLFDEPTSALDP-------------ELVGE-----VLRIMQQLAEEGKTMVVVTHEM--------GFARHVSSHVIF 225 (262)
T ss_dssp CSEEEEESTTTTSCH-------------HHHHH-----HHHHHHHHHHTTCCEEEECSCH--------HHHHHHCSEEEE
T ss_pred CCEEEEeCCCccCCH-------------HHHHH-----HHHHHHHHHhCCCEEEEEeCCH--------HHHHHhCCEEEE
Confidence 999999999999984 11222 5666666666677887776531 156677888888
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+..
T Consensus 226 l~~ 228 (262)
T 1b0u_A 226 LHQ 228 (262)
T ss_dssp EET
T ss_pred EEC
Confidence 874
No 93
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.84 E-value=3.9e-09 Score=86.83 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999999999776543
No 94
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.83 E-value=8.9e-09 Score=77.13 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=28.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
..+..++|+||||||||++|+.++.... ..+.+++ ++
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~v-~~ 58 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEFV-YR 58 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSCCE-EE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCCEE-EE
Confidence 3567799999999999999998876554 4455666 54
No 95
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.82 E-value=5.2e-09 Score=89.68 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=24.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++|..+.|.||+|||||||++.++...
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3799999999999999999999887543
No 96
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.82 E-value=4.9e-09 Score=86.69 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=24.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
..+|..+.|.||+|||||||++.++...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3799999999999999999999876543
No 97
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.82 E-value=8.1e-09 Score=84.56 Aligned_cols=28 Identities=32% Similarity=0.410 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+|..+.|.||+|||||||++.++....
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 6999999999999999999998765443
No 98
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.80 E-value=3.3e-08 Score=77.76 Aligned_cols=35 Identities=29% Similarity=0.262 Sum_probs=31.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
..++|+||||||||+|+..++.... ..+.+++|++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~-~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA-KRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEE
Confidence 7899999999999999999998877 6678899886
No 99
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=98.78 E-value=1.5e-07 Score=77.35 Aligned_cols=42 Identities=12% Similarity=0.047 Sum_probs=38.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCC
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRS 58 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~ 58 (233)
..+|+.++|.|.||+|||+|+.||+.+.+ +.|.+++|++.++
T Consensus 18 l~~gs~~li~g~p~~~~~~l~~qfl~~g~-~~Ge~~~~~~~~e 59 (260)
T 3bs4_A 18 KKHSLILIHEEDASSRGKDILFYILSRKL-KSDNLVGMFSISY 59 (260)
T ss_dssp CTTCEEEEEECSGGGCHHHHHHHHHHHHH-HTTCEEEEEECSS
T ss_pred CCCCcEEEEEeCCCccHHHHHHHHHHHHH-HCCCcEEEEEEeC
Confidence 36999999999999999999999999999 7799999998663
No 100
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.78 E-value=2.4e-08 Score=78.00 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
+|.+.+++||||+||||++.+++.... ..|.+++++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~~~~ 38 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVAVFK 38 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEe
Confidence 477899999999999999999988776 5677888875
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.76 E-value=9.7e-09 Score=86.64 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
+..++|+||||||||+|+..++.......|.+++|++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 6899999999999999999999876624578899986
No 102
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.75 E-value=1.4e-08 Score=91.78 Aligned_cols=144 Identities=18% Similarity=0.233 Sum_probs=81.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC------CCeEEEEecCCccccc---cccccc----cc-CC---chhhhc
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS------NANVVFMCNRSRLQSK---RPYLSQ----SI-DP---SSHVFK 79 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~------g~~v~yi~~e~~l~~~---~~~~~~----~~-~~---~~~~~~ 79 (233)
.+|.++.|.||+|||||||++.++....... +..+.|+......... .+.+.. .. .. ...+++
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~ 371 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTK 371 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHH
Confidence 5899999999999999999998775443221 3345566543110000 000000 00 00 011111
Q ss_pred ceEE--------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHh
Q 041690 80 LIQM--------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHA 151 (233)
Q Consensus 80 ~i~~--------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l 151 (233)
.+.+ ..++.++..+-.++.+-..+ |+++++||+++.++. ..+. .+++.++.+
T Consensus 372 ~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~--p~lLlLDEPT~gLD~-------------~~~~-----~i~~~l~~l 431 (538)
T 3ozx_A 372 RLNLHRLLESNVNDLSGGELQKLYIAATLAKE--ADLYVLDQPSSYLDV-------------EERY-----IVAKAIKRV 431 (538)
T ss_dssp TTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSC--CSEEEEESTTTTCCH-------------HHHH-----HHHHHHHHH
T ss_pred HcCCHHHhcCChhhCCHHHHHHHHHHHHHHcC--CCEEEEeCCccCCCH-------------HHHH-----HHHHHHHHH
Confidence 1111 22334555555555544323 999999999999984 1111 256666666
Q ss_pred hh-cCCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 152 NK-KSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 152 ~~-~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
.+ .+.+++++++. .....++.|+++.+.+
T Consensus 432 ~~~~g~tvi~vsHd--------l~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 432 TRERKAVTFIIDHD--------LSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHTTCEEEEECSC--------HHHHHHHCSEEEEEEE
T ss_pred HHhCCCEEEEEeCC--------HHHHHHhCCEEEEEeC
Confidence 54 46777777553 1256777888888875
No 103
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.74 E-value=1.5e-08 Score=82.68 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.++|..+.|.||+|||||||++.++....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 37999999999999999999998765443
No 104
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.73 E-value=2.7e-08 Score=90.02 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-----CeEEEEecCCccccc---cccccc----ccCC---chhhhcce
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSN-----ANVVFMCNRSRLQSK---RPYLSQ----SIDP---SSHVFKLI 81 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-----~~v~yi~~e~~l~~~---~~~~~~----~~~~---~~~~~~~i 81 (233)
.+|..+.|.||+|||||||++.++.......| ..+.|+..+...... .+.+.. .... ...+++.+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL 389 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 58999999999999999999988765442222 357788765321100 000000 0000 01111111
Q ss_pred EE--------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhh-
Q 041690 82 QM--------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHAN- 152 (233)
Q Consensus 82 ~~--------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~- 152 (233)
.+ ..++.++..+-.++.+-. ..|+++++||+++-++. ... ..+++.+..+.
T Consensus 390 ~l~~~~~~~~~~LSGGe~qrv~lAraL~--~~p~lLlLDEPt~~LD~-------------~~~-----~~i~~~l~~l~~ 449 (538)
T 1yqt_A 390 GIIDLYDREVNELSGGELQRVAIAATLL--RDADIYLLDEPSAYLDV-------------EQR-----LAVSRAIRHLME 449 (538)
T ss_dssp TCGGGTTSBGGGCCHHHHHHHHHHHHHT--SCCSEEEEECTTTTCCH-------------HHH-----HHHHHHHHHHHH
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHH--hCCCEEEEeCCcccCCH-------------HHH-----HHHHHHHHHHHH
Confidence 11 223345555555555442 23999999999999984 111 12566666654
Q ss_pred hcCCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 153 KKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 153 ~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+.+.+++++++. ...+.++.++++.+.+
T Consensus 450 ~~g~tvi~vsHd--------~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 450 KNEKTALVVEHD--------VLMIDYVSDRLMVFEG 477 (538)
T ss_dssp HHTCEEEEECSC--------HHHHHHHCSEEEEEEE
T ss_pred hCCCEEEEEeCC--------HHHHHHhCCEEEEEeC
Confidence 457788887653 1256788899888874
No 105
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.73 E-value=5.1e-08 Score=88.26 Aligned_cols=72 Identities=18% Similarity=0.133 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCC
Q 041690 89 DEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGN 168 (233)
Q Consensus 89 ~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~ 168 (233)
++..+-.++.+-. ..|+++++||+++-++. ..... +++.++.+++.+.+++++++.
T Consensus 162 GekQRv~iAraL~--~~P~lLlLDEPTs~LD~-------------~~~~~-----l~~~L~~l~~~g~tvi~vsHd---- 217 (538)
T 1yqt_A 162 GELQRVAIAAALL--RNATFYFFDEPSSYLDI-------------RQRLN-----AARAIRRLSEEGKSVLVVEHD---- 217 (538)
T ss_dssp HHHHHHHHHHHHH--SCCSEEEEESTTTTCCH-------------HHHHH-----HHHHHHHHHHTTCEEEEECSC----
T ss_pred HHHHHHHHHHHHh--cCCCEEEEECCcccCCH-------------HHHHH-----HHHHHHHHHhcCCEEEEEeCC----
Confidence 4444444444332 23999999999999984 11111 566666666667788877653
Q ss_pred CchhHHHHHHhhccceEEEe
Q 041690 169 STRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~ 188 (233)
...+.++.+.++.+.+
T Consensus 218 ----~~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 218 ----LAVLDYLSDIIHVVYG 233 (538)
T ss_dssp ----HHHHHHHCSEEEEEEE
T ss_pred ----HHHHHHhCCEEEEEcC
Confidence 1256777888887764
No 106
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.73 E-value=6.5e-09 Score=86.55 Aligned_cols=27 Identities=26% Similarity=0.126 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 699999999999999999999776543
No 107
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.72 E-value=1.4e-08 Score=81.26 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 699999999999999999999876543
No 108
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.72 E-value=3.1e-08 Score=85.00 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCN 56 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~ 56 (233)
..+..++|+||||||||++++.++...... .+..++|++.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 467789999999999999999998876522 1567788864
No 109
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.72 E-value=3.4e-09 Score=81.69 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=35.6
Q ss_pred CCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeec
Q 041690 103 DKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDT 164 (233)
Q Consensus 103 ~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~ 164 (233)
...|.++++||+++.++.... .|... ......+......+++.+..++++|.+++++++.
T Consensus 99 ~~~p~~lllDEPt~~Ld~~~~-~R~~~-~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~ 158 (171)
T 4gp7_A 99 HCFPVAVVFNLPEKVCQERNK-NRTDR-QVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNS 158 (171)
T ss_dssp TCEEEEEEECCCHHHHHHHHH-TCSSC-CCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECS
T ss_pred CCcEEEEEEeCCHHHHHHHHh-cccCC-CCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCC
Confidence 344999999999998874211 11101 1122223334445666776676778888888764
No 110
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.71 E-value=8.6e-08 Score=71.56 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=19.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFA 40 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a 40 (233)
.+..++|+||||||||++|+.++
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCcEEEECCCCccHHHHHHHHH
Confidence 55679999999999999999543
No 111
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.71 E-value=9.2e-09 Score=84.13 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 699999999999999999999876543
No 112
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.71 E-value=1.8e-07 Score=77.94 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
++..++|+||||||||++++.++... +.++++++
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l----~~~~~~i~ 82 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA----NAPFIKVE 82 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----CCCEEEEc
Confidence 46789999999999999999888754 45677776
No 113
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.70 E-value=3.4e-08 Score=90.59 Aligned_cols=144 Identities=15% Similarity=0.187 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-----CeEEEEecCCccccc---ccccccc----cCCc---hhhhcce
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSN-----ANVVFMCNRSRLQSK---RPYLSQS----IDPS---SHVFKLI 81 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-----~~v~yi~~e~~l~~~---~~~~~~~----~~~~---~~~~~~i 81 (233)
.+|.++.|.||+|||||||++.++.......| ..+.|+..+...... .+.+... .... ..+++.+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~ 459 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL 459 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 58999999999999999999988765432222 357787765211100 0000000 0000 1111111
Q ss_pred EE--------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhh-
Q 041690 82 QM--------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHAN- 152 (233)
Q Consensus 82 ~~--------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~- 152 (233)
.+ ..++.++..+-.++.+-. ..|+++++||+++.++. ..+.. +++.++.+.
T Consensus 460 ~l~~~~~~~~~~LSGGe~QRv~iAraL~--~~p~lLlLDEPt~~LD~-------------~~~~~-----l~~~l~~l~~ 519 (607)
T 3bk7_A 460 GIIDLYDRNVEDLSGGELQRVAIAATLL--RDADIYLLDEPSAYLDV-------------EQRLA-----VSRAIRHLME 519 (607)
T ss_dssp TCTTTTTSBGGGCCHHHHHHHHHHHHHT--SCCSEEEEECTTTTCCH-------------HHHHH-----HHHHHHHHHH
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHH--hCCCEEEEeCCccCCCH-------------HHHHH-----HHHHHHHHHH
Confidence 11 123334555555554432 23999999999999984 11222 566666654
Q ss_pred hcCCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 153 KKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 153 ~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
+.+.+++++++. .....++.++++.+.+
T Consensus 520 ~~g~tvi~vsHd--------~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 520 KNEKTALVVEHD--------VLMIDYVSDRLIVFEG 547 (607)
T ss_dssp HTTCEEEEECSC--------HHHHHHHCSEEEEEEE
T ss_pred hCCCEEEEEeCC--------HHHHHHhCCEEEEEcC
Confidence 357777777653 1256778898888874
No 114
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.68 E-value=1.2e-08 Score=85.91 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 799999999999999999999776544
No 115
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.67 E-value=7.2e-08 Score=88.42 Aligned_cols=73 Identities=15% Similarity=0.100 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCC
Q 041690 88 DDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLG 167 (233)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~ 167 (233)
.++..+-.++.+-.. .|+++++||+++.++. ..+.. +++.++.+++.+.+++++++.
T Consensus 231 GGekQRvaIAraL~~--~P~lLlLDEPTs~LD~-------------~~~~~-----l~~~L~~l~~~g~tvIivsHd--- 287 (607)
T 3bk7_A 231 GGELQRVAIAAALLR--KAHFYFFDEPSSYLDI-------------RQRLK-----VARVIRRLANEGKAVLVVEHD--- 287 (607)
T ss_dssp HHHHHHHHHHHHHHS--CCSEEEEECTTTTCCH-------------HHHHH-----HHHHHHHHHHTTCEEEEECSC---
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEECCcccCCH-------------HHHHH-----HHHHHHHHHhcCCEEEEEecC---
Confidence 344444445444322 3999999999999984 11112 566666665667788777663
Q ss_pred CCchhHHHHHHhhccceEEEe
Q 041690 168 NSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~i~~ 188 (233)
...+.++.+.++.+.+
T Consensus 288 -----l~~~~~~adri~vl~~ 303 (607)
T 3bk7_A 288 -----LAVLDYLSDVIHVVYG 303 (607)
T ss_dssp -----HHHHHHHCSEEEEEES
T ss_pred -----hHHHHhhCCEEEEECC
Confidence 1155677788877764
No 116
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.67 E-value=1.5e-07 Score=79.90 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
+...++|+||||||||++++.++.. .+.++++++... . . ....+...+.
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~----~~~~~~~~~~~~--------~-----~--------------~~~~~~~~~~ 102 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE----MSANIKTTAAPM--------I-----E--------------KSGDLAAILT 102 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH----TTCCEEEEEGGG--------C-----C--------------SHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH----hCCCeEEecchh--------c-----c--------------chhHHHHHHH
Confidence 4467999999999999999988663 355666664210 0 0 0233334443
Q ss_pred HhcccCCCCcEEEEeCCCcccc
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFD 119 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~ 119 (233)
.. ..+.+|||||++.+-.
T Consensus 103 ~~----~~~~vl~lDEi~~l~~ 120 (338)
T 3pfi_A 103 NL----SEGDILFIDEIHRLSP 120 (338)
T ss_dssp TC----CTTCEEEEETGGGCCH
T ss_pred hc----cCCCEEEEechhhcCH
Confidence 21 2378999999998764
No 117
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.66 E-value=1.7e-07 Score=80.53 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.++..++|.||+|||||||++.++.......++.++.+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 477799999999999999999988777644456665553
No 118
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.66 E-value=2e-07 Score=80.04 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcC-CCeEEEEec
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQS-NANVVFMCN 56 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~-g~~v~yi~~ 56 (233)
.++|+||||+|||++++.++.... .. +..++|++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~-~~~~~~~~~i~~ 81 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK-DKTTARFVYING 81 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT-TSCCCEEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh-hhcCeeEEEEeC
Confidence 899999999999999999987766 33 567888873
No 119
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.65 E-value=2.3e-08 Score=81.18 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC-----CCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS-----NANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~-----g~~v~yi~~e 57 (233)
++|..+.|.||+|||||||++.++....... ++.+.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~ 74 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQ 74 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCC
Confidence 7999999999999999999998765443221 1245677654
No 120
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.63 E-value=7.6e-08 Score=88.18 Aligned_cols=143 Identities=13% Similarity=0.168 Sum_probs=81.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-----eEEEEecCCcccc--c-cccccc----ccCCc---hhhhcceE
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNA-----NVVFMCNRSRLQS--K-RPYLSQ----SIDPS---SHVFKLIQ 82 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~-----~v~yi~~e~~l~~--~-~~~~~~----~~~~~---~~~~~~i~ 82 (233)
+|.++.|.||+|||||||++.++.......|. .+.|+........ . .+.+.. ..... ..+++.+.
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~ 456 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR 456 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence 45789999999999999999887655433332 4667654411000 0 000000 00000 01111111
Q ss_pred --------EEEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhh-h
Q 041690 83 --------MKYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHAN-K 153 (233)
Q Consensus 83 --------~~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~-~ 153 (233)
...++.++..+-.++.+-. ..|+++++||+++-++. ..+. .++++++.+. +
T Consensus 457 l~~~~~~~~~~LSGGqkQRv~iAraL~--~~p~lLlLDEPT~gLD~-------------~~~~-----~i~~ll~~l~~~ 516 (608)
T 3j16_B 457 IDDIIDQEVQHLSGGELQRVAIVLALG--IPADIYLIDEPSAYLDS-------------EQRI-----ICSKVIRRFILH 516 (608)
T ss_dssp STTTSSSBSSSCCHHHHHHHHHHHHTT--SCCSEEEECCTTTTCCH-------------HHHH-----HHHHHHHHHHHH
T ss_pred ChhhhcCChhhCCHHHHHHHHHHHHHH--hCCCEEEEECCCCCCCH-------------HHHH-----HHHHHHHHHHHh
Confidence 1233445555656665443 33999999999999984 1111 2566666654 4
Q ss_pred cCCcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 154 KSPCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 154 ~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
.|.+++++++.- ....++.++++.+.+
T Consensus 517 ~g~tviivtHdl--------~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 517 NKKTAFIVEHDF--------IMATYLADKVIVFEG 543 (608)
T ss_dssp HTCEEEEECSCH--------HHHHHHCSEEEECEE
T ss_pred CCCEEEEEeCCH--------HHHHHhCCEEEEEeC
Confidence 578888886531 156677888888875
No 121
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.62 E-value=1.4e-07 Score=83.52 Aligned_cols=69 Identities=26% Similarity=0.263 Sum_probs=42.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFAA 98 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 98 (233)
...++|+||||||||++++.++... +..++.++... .. ...++..+..
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~----~~~f~~l~a~~--------------~~--------------~~~ir~~~~~ 97 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYA----NADVERISAVT--------------SG--------------VKEIREAIER 97 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHT----TCEEEEEETTT--------------CC--------------HHHHHHHHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHh----CCCeEEEEecc--------------CC--------------HHHHHHHHHH
Confidence 3579999999999999999887643 45555554110 00 2233444433
Q ss_pred hccc--CCCCcEEEEeCCCcccc
Q 041690 99 FHQH--DKIPTAVVVDDFGDLFD 119 (233)
Q Consensus 99 ~~~~--~~~p~iIvIDei~~~~~ 119 (233)
+... ...+.+|||||++.+-.
T Consensus 98 a~~~~~~~~~~iLfIDEI~~l~~ 120 (447)
T 3pvs_A 98 ARQNRNAGRRTILFVDEVHRFNK 120 (447)
T ss_dssp HHHHHHTTCCEEEEEETTTCC--
T ss_pred HHHhhhcCCCcEEEEeChhhhCH
Confidence 3211 22378999999998765
No 122
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.62 E-value=7.9e-08 Score=79.60 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++|..+.|.||+|||||||++.++...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3799999999999999999999876544
No 123
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.62 E-value=5e-08 Score=80.62 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=24.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.++|..+.|.||+|||||||++.++..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 379999999999999999999988764
No 124
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.61 E-value=7.8e-08 Score=79.16 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=24.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++|..+.|.||+|||||||++.++...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3799999999999999999999877543
No 125
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.61 E-value=2.9e-08 Score=85.37 Aligned_cols=34 Identities=26% Similarity=0.190 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
++..++|+||||||||++|+.++... +.+++.++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~----~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL----DVPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc----CCCEEEec
Confidence 66789999999999999999887644 56677664
No 126
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.60 E-value=1.1e-07 Score=81.29 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC--CCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS--NANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~--g~~v~yi~ 55 (233)
..+..++|+||||+|||+|++.++....... +..++|++
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3577899999999999999999988765332 56788886
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.59 E-value=1.1e-07 Score=74.83 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
...++|+||||+|||++++.++....
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 34599999999999999999988764
No 128
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.59 E-value=4.7e-07 Score=76.32 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+..++++||||||||++++.++... +..+++++
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l----~~~~~~i~ 80 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDV----NADMMFVN 80 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHT----TEEEEEEE
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHh----CCCEEEEc
Confidence 44678889999999999999887643 56788886
No 129
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.58 E-value=2.1e-07 Score=84.21 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=25.9
Q ss_pred ccCCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 14 LETHVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 14 ~~~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
+..++|.++.|.||+|||||||++.++....
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3447999999999999999999998775443
No 130
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.58 E-value=3.2e-08 Score=79.94 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC-----CCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS-----NANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~-----g~~v~yi~~e 57 (233)
++|..+.|.||+|||||||++.++....... ++.+.|+..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~ 77 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQF 77 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecC
Confidence 6999999999999999999997765443211 2246677654
No 131
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.58 E-value=8.3e-08 Score=87.95 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=40.2
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++.++. ..+. .+++.++.+++.+.+++++++. ...+.++.+.++.
T Consensus 240 p~llllDEPts~LD~-------------~~~~-----~l~~~l~~l~~~g~tvi~vtHd--------l~~~~~~~drv~v 293 (608)
T 3j16_B 240 ADVYMFDEPSSYLDV-------------KQRL-----NAAQIIRSLLAPTKYVICVEHD--------LSVLDYLSDFVCI 293 (608)
T ss_dssp CSEEEEECTTTTCCH-------------HHHH-----HHHHHHHGGGTTTCEEEEECSC--------HHHHHHHCSEEEE
T ss_pred CCEEEEECcccCCCH-------------HHHH-----HHHHHHHHHHhCCCEEEEEeCC--------HHHHHHhCCEEEE
Confidence 999999999999983 1111 2677777787778887777553 1255667777777
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+.+
T Consensus 294 l~~ 296 (608)
T 3j16_B 294 IYG 296 (608)
T ss_dssp EES
T ss_pred EeC
Confidence 753
No 132
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.58 E-value=2.5e-07 Score=77.33 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
+...++|+||||||||++++.++.... ..+.++++++.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~-~~~~~~~~~~~ 83 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLF-DTEEAMIRIDM 83 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHH-SCGGGEEEEEG
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHc-CCCcceEEeec
Confidence 345899999999999999999998776 55667888863
No 133
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.58 E-value=9.2e-08 Score=78.25 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
++|..+.|.||+|||||||++.++..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999999999999988764
No 134
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.55 E-value=7.7e-08 Score=87.22 Aligned_cols=34 Identities=38% Similarity=0.497 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
+|..++|+||||||||||++.++.... .+...+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~----~~~~~i~ 140 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG----RKFVRIS 140 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT----CEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC----CCeEEEE
Confidence 788999999999999999998887553 3444443
No 135
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.54 E-value=1e-07 Score=78.53 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
+ |..+.|.||+|||||||++.++...
T Consensus 29 ~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 29 N-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp C-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred C-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6 9999999999999999999877544
No 136
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.53 E-value=1e-06 Score=69.94 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
+..++|+||||+|||++++.++....
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999987665
No 137
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.52 E-value=2.7e-07 Score=84.34 Aligned_cols=28 Identities=18% Similarity=0.168 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7999999999999999999998876554
No 138
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.52 E-value=2.8e-07 Score=79.48 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
+...++|+||||||||++|+.++... +.++++++
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l----~~~~~~~~ 104 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL----DIPIAISD 104 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh----CCCEEEec
Confidence 56789999999999999999887644 56777775
No 139
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.51 E-value=3.3e-07 Score=78.69 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc------C-CCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ------S-NANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~------~-g~~v~yi~ 55 (233)
.+..++|+||||+|||++++.++...... . +..++|++
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 46789999999999999999998876422 1 67788886
No 140
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.51 E-value=4e-07 Score=70.68 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=27.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCC
Q 041690 22 TLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRS 58 (233)
Q Consensus 22 ~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~ 58 (233)
++|+|++|||||++|.+++. . +.+++|++|..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~----~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG----D-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC----S-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHh----c-CCCeEEEecCC
Confidence 79999999999999998764 3 67899999864
No 141
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=8.9e-07 Score=79.72 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
+...++|+||||||||++|+.++... +..+++++.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l----~~~~i~in~ 110 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL----GYDILEQNA 110 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT----TCEEEEECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEeC
Confidence 45789999999999999999887644 677888863
No 142
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.49 E-value=1.8e-07 Score=85.73 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 7999999999999999999997765443
No 143
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.48 E-value=9.3e-07 Score=72.41 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
..+..++|+||||||||++|+.++.... ..+.++++++
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~-~~~~~~~~v~ 64 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSS-RWQGPFISLN 64 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTST-TTTSCEEEEE
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcC-ccCCCeEEEe
Confidence 3567899999999999999998887655 4467788886
No 144
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=1.3e-06 Score=74.29 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..++|+||||+||||+++.++....
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3499999999999999999988554
No 145
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.46 E-value=1.1e-07 Score=82.68 Aligned_cols=27 Identities=26% Similarity=0.188 Sum_probs=24.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.++|..+.|.||+|||||||++.++..
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 379999999999999999999988754
No 146
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.46 E-value=3e-07 Score=77.31 Aligned_cols=34 Identities=32% Similarity=0.325 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+..++|+||||||||++++.++... +.++++++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~----~~~~~~~~ 70 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL----GVNLRVTS 70 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH----TCCEEEEC
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh----CCCEEEEe
Confidence 45789999999999999999887644 45677664
No 147
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.45 E-value=3.1e-07 Score=83.94 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 7999999999999999999998775443
No 148
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.45 E-value=8.8e-07 Score=72.86 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=31.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.++|..++|.||+|||||||++.++........+.+.+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 4689999999999999999999988766533245565553
No 149
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=98.45 E-value=1.8e-06 Score=67.70 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=32.9
Q ss_pred ccCCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 14 LETHVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 14 ~~~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.....|...+++||.|+||||.+.+.+.+.. ..+.+++|+..+
T Consensus 15 ~~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~-~~~~kvl~~kp~ 57 (195)
T 1w4r_A 15 GSKTRGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYA 57 (195)
T ss_dssp ----CCEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEET
T ss_pred CCCCceEEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEccc
Confidence 3345788999999999999987777777776 568899998744
No 150
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.45 E-value=1.2e-07 Score=86.63 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 799999999999999999999766443
No 151
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.44 E-value=1.2e-06 Score=82.25 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc------CCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ------SNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDE 90 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~------~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 90 (233)
..+..++|+||||||||++++.++...... .+..++.++..... .. ....+. ...
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~-~~----~~~~g~--------------~e~ 265 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL-AG----TKYRGD--------------FEK 265 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----CC----CCCSSC--------------HHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-cc----ccccch--------------HHH
Confidence 367889999999999999999999876521 13334433211100 00 000011 145
Q ss_pred HHHHHHHHhcccCCCCcEEEEeCCCccccc
Q 041690 91 EIKKYFAAFHQHDKIPTAVVVDDFGDLFDD 120 (233)
Q Consensus 91 ~l~~~~~~~~~~~~~p~iIvIDei~~~~~~ 120 (233)
.++.++..+. ...+.+|||||++.+...
T Consensus 266 ~l~~~~~~~~--~~~~~iL~IDEi~~l~~~ 293 (758)
T 1r6b_X 266 RFKALLKQLE--QDTNSILFIDEIHTIIGA 293 (758)
T ss_dssp HHHHHHHHHS--SSSCEEEEETTTTTTTTS
T ss_pred HHHHHHHHHH--hcCCeEEEEechHHHhhc
Confidence 6677777665 233799999999999863
No 152
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.44 E-value=6.2e-07 Score=85.41 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc------CCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ------SNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEE 91 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~------~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 91 (233)
....++|+||||||||++++.++...... .+.++++++....... . ...+ .....
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g-~----~~~g--------------~~~~~ 250 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG-A----KYRG--------------EFEER 250 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------------CHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc-C----ccch--------------HHHHH
Confidence 45678999999999999999999877521 2667777752210000 0 0000 11445
Q ss_pred HHHHHHHhcccCCCCcEEEEeCCCccccc
Q 041690 92 IKKYFAAFHQHDKIPTAVVVDDFGDLFDD 120 (233)
Q Consensus 92 l~~~~~~~~~~~~~p~iIvIDei~~~~~~ 120 (233)
+..++..+... ..+.+|||||++.+...
T Consensus 251 l~~~~~~~~~~-~~~~iL~IDEi~~l~~~ 278 (854)
T 1qvr_A 251 LKAVIQEVVQS-QGEVILFIDELHTVVGA 278 (854)
T ss_dssp HHHHHHHHHTT-CSSEEEEECCC------
T ss_pred HHHHHHHHHhc-CCCeEEEEecHHHHhcc
Confidence 66677665422 23789999999999863
No 153
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.44 E-value=2.3e-07 Score=77.60 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC-----CCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS-----NANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~-----g~~v~yi~~e 57 (233)
++|..+.|.||+|||||||++.++....... ++.+.|+..+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~ 107 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQN 107 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCC
Confidence 6999999999999999999997765443221 2346777655
No 154
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.44 E-value=7.1e-07 Score=76.39 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
++..++|+||||||||++++.++.... . ..+.+.+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~-~-~~~~~~~~ 104 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG-P-DTPFTAIA 104 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC-S-SCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc-c-cCCccccc
Confidence 567999999999999999999987665 2 23455544
No 155
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.43 E-value=6.1e-07 Score=76.30 Aligned_cols=83 Identities=7% Similarity=0.147 Sum_probs=47.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
++|..++|.||+|||||||++.++.... . ....+.+.....+.. .. ..+.+.+.+ ......+..+
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~-~-~~g~i~i~~~~e~~~-----~~-------~~~~i~~~~-ggg~~~r~~l 233 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIP-K-EERIISIEDTEEIVF-----KH-------HKNYTQLFF-GGNITSADCL 233 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSC-T-TSCEEEEESSCCCCC-----SS-------CSSEEEEEC-BTTBCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc-C-CCcEEEECCeecccc-----cc-------chhEEEEEe-CCChhHHHHH
Confidence 5789999999999999999998775544 3 334555543221110 00 001111111 0223334444
Q ss_pred HHhcccCCCCcEEEEeCCCc
Q 041690 97 AAFHQHDKIPTAVVVDDFGD 116 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~ 116 (233)
+.+- ...|+++++||+++
T Consensus 234 a~aL--~~~p~ilildE~~~ 251 (330)
T 2pt7_A 234 KSCL--RMRPDRIILGELRS 251 (330)
T ss_dssp HHHT--TSCCSEEEECCCCS
T ss_pred HHHh--hhCCCEEEEcCCCh
Confidence 4433 23399999999987
No 156
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.43 E-value=5.9e-07 Score=70.94 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
-+++++|+||||||+++...+...
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 478999999999999998876554
No 157
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.42 E-value=6.4e-08 Score=85.28 Aligned_cols=129 Identities=12% Similarity=0.021 Sum_probs=42.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCccccccccccc-ccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQ-SIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
++..++|+||||||||++++.+|... +.+++.++.. .+... +.+. +....++.++
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l----~~~~~~v~~~-------~~~~~g~vG~-------------d~e~~lr~lf 104 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLA----NAPFIKVEAT-------KFTEVGYVGK-------------EVDSIIRDLT 104 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEGG-------GGC----CCC-------------CTHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHc----CCCceeecch-------hhcccceeec-------------cHHHHHHHHH
Confidence 45679999999999999999887644 4566666421 11111 1111 1155667777
Q ss_pred HHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHH
Q 041690 97 AAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIY 176 (233)
Q Consensus 97 ~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~ 176 (233)
..+.. ++.+|+++.+... .....+.++..+|+..++.+.. .+ .+..+++|.++.......-
T Consensus 105 ~~a~~------~~~~De~d~~~~~--------~~~~~e~rvl~~LL~~~dg~~~---~~--~v~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 105 DSAMK------LVRQQEIAKNRAR--------AEDVAEERILDALLPPAKNQWG---EV--ENHDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp HHHHH------HHHHHHHHSCC----------------------------------------------------------
T ss_pred HHHHh------cchhhhhhhhhcc--------chhhHHHHHHHHHHHHhhcccc---cc--ccccccccCHHHHHHHHHc
Confidence 65532 2347887665542 1222344566677766666532 11 1233337777655544455
Q ss_pred HHhhccceEEEec
Q 041690 177 KRWISSIFTVKGD 189 (233)
Q Consensus 177 ~~~~~~~~~i~~~ 189 (233)
.+++|..++|+-.
T Consensus 166 ggr~D~~i~i~lP 178 (444)
T 1g41_A 166 GQLDDKEIEIDVS 178 (444)
T ss_dssp -------------
T ss_pred CCCcceEEEEcCC
Confidence 5688888888764
No 158
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=1.2e-06 Score=74.26 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=26.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCeEEEEe
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQ--SNANVVFMC 55 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~--~g~~v~yi~ 55 (233)
..++|+||||+|||++++.++...... ....+++++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 459999999999999999998876421 234455554
No 159
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.39 E-value=1.1e-06 Score=82.48 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=30.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
..++|+||||||||++|+.++.... ..+.++++++
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~-~~~~~~i~i~ 556 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIF-GDEESMIRID 556 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHH-SCTTCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc-CCCcceEEEe
Confidence 3799999999999999999998776 5577888886
No 160
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.39 E-value=3.1e-07 Score=84.09 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 799999999999999999999776544
No 161
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=98.38 E-value=1.5e-06 Score=68.23 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+|.+.+++||+|+||||.+.+++.... ..|.+|+.+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEE
Confidence 3678999999999999999999998887 6688888774
No 162
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.37 E-value=1.4e-07 Score=86.02 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 799999999999999999999666443
No 163
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.35 E-value=2.2e-06 Score=71.95 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
..+..++|+||||||||++|+.++.... ..+.++++++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~~~~v~v~ 60 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSA-RSDRPLVTLN 60 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSS-CSSSCCCEEE
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCc-ccCCCeEEEe
Confidence 3567899999999999999998887555 5567788875
No 164
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.35 E-value=2.9e-06 Score=74.66 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=35.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.++.++++.|+||+||||++..+|..+. ..|.+|+.++..
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~-~~G~kVllv~~D 137 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQ-KRGYKVGVVCSD 137 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHH-HCCCeEEEEeCC
Confidence 3578999999999999999999998888 678999999854
No 165
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.34 E-value=4.6e-06 Score=66.32 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=33.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+|.+.+++||.|+||||.+++.+.... ..|.+|+++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQ-FAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEE
Confidence 5788889999999999999999999887 6688888874
No 166
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.34 E-value=3.4e-06 Score=65.27 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+.|.||||||||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999888665
No 167
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.34 E-value=4.9e-06 Score=70.64 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+..++++||||+|||++++.++..+.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHh
Confidence 345699999999999999999998765
No 168
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.33 E-value=2.6e-06 Score=79.00 Aligned_cols=54 Identities=7% Similarity=-0.029 Sum_probs=36.3
Q ss_pred Cc--EEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccc
Q 041690 106 PT--AVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSI 183 (233)
Q Consensus 106 p~--iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~ 183 (233)
|+ ++++||+++-++.. .... +++.++.+++.|.++|++++.. . .+. ..+.+
T Consensus 221 p~~~lLlLDEPtsgLD~~-------------~~~~-----l~~~l~~l~~~g~tvi~vtHd~-------~-~~~-~~d~i 273 (670)
T 3ux8_A 221 LTGVLYVLDEPSIGLHQR-------------DNDR-----LIATLKSMRDLGNTLIVVEHDE-------D-TML-AADYL 273 (670)
T ss_dssp CCSCEEEEECTTTTCCGG-------------GHHH-----HHHHHHHHHHTTCEEEEECCCH-------H-HHH-HCSEE
T ss_pred CCCCEEEEECCccCCCHH-------------HHHH-----HHHHHHHHHHcCCEEEEEeCCH-------H-HHh-hCCEE
Confidence 55 99999999999841 1111 5667777767788888876631 1 233 37877
Q ss_pred eEE
Q 041690 184 FTV 186 (233)
Q Consensus 184 ~~i 186 (233)
+.+
T Consensus 274 i~l 276 (670)
T 3ux8_A 274 IDI 276 (670)
T ss_dssp EEE
T ss_pred EEe
Confidence 777
No 169
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.32 E-value=5.9e-07 Score=89.12 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||+..+.....
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 7999999999999999999997765444
No 170
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.30 E-value=3.7e-06 Score=78.98 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
+...++|+||||||||++|+.++... +.++++++.
T Consensus 487 p~~~~ll~G~~GtGKT~la~~la~~l----~~~~~~i~~ 521 (758)
T 1r6b_X 487 PVGSFLFAGPTGVGKTEVTVQLSKAL----GIELLRFDM 521 (758)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH----TCEEEEEEG
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHh----cCCEEEEec
Confidence 44579999999999999999888755 467888763
No 171
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.29 E-value=1.6e-06 Score=67.86 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCC
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSN 48 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g 48 (233)
|..+.|.||+|||||||++.++.... ..|
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 46789999999999999999988765 444
No 172
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=7.3e-06 Score=68.87 Aligned_cols=75 Identities=9% Similarity=0.056 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhh--cCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCAS--QSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYF 96 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~--~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 96 (233)
...++++||||+|||++++.++..+.. .....+.+++.++ . . ..-+.+++++
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~----------~-------------~~id~ir~li 71 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E----------N-------------IGIDDIRTIK 71 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S----------C-------------BCHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C----------C-------------CCHHHHHHHH
Confidence 468999999999999999999875320 1123455553110 0 0 0144566666
Q ss_pred HHhccc--CCCCcEEEEeCCCcccc
Q 041690 97 AAFHQH--DKIPTAVVVDDFGDLFD 119 (233)
Q Consensus 97 ~~~~~~--~~~p~iIvIDei~~~~~ 119 (233)
..+... ....++|||||++.+-.
T Consensus 72 ~~~~~~p~~~~~kvviIdead~lt~ 96 (305)
T 2gno_A 72 DFLNYSPELYTRKYVIVHDCERMTQ 96 (305)
T ss_dssp HHHTSCCSSSSSEEEEETTGGGBCH
T ss_pred HHHhhccccCCceEEEeccHHHhCH
Confidence 665432 22368999999988764
No 173
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=2.6e-06 Score=71.32 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
....++|+||||+|||++++.++....
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 334699999999999999999988764
No 174
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.27 E-value=3.1e-06 Score=72.29 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
+..++|+||||+|||++++.++....
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999987665
No 175
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.27 E-value=1.4e-06 Score=83.38 Aligned_cols=141 Identities=12% Similarity=0.120 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh-hc---CCCeEEEEecCC-ccccc---cccccc-ccCC---chhhhcceEE-
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA-SQ---SNANVVFMCNRS-RLQSK---RPYLSQ-SIDP---SSHVFKLIQM- 83 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~-~~---~g~~v~yi~~e~-~l~~~---~~~~~~-~~~~---~~~~~~~i~~- 83 (233)
.+|..+.|.||+|||||||++.++.-.. .. ...++.|+..+. .+... .+.+.. ..+. ....++.+.+
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 6999999999999999999998873111 00 112355654321 00000 011100 0000 0011111111
Q ss_pred --------EEecCHHHHHHHHHHhcccCCCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcC
Q 041690 84 --------KYVEDDEEIKKYFAAFHQHDKIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKS 155 (233)
Q Consensus 84 --------~~~~~~~~l~~~~~~~~~~~~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~ 155 (233)
..++.++..+-.++.+-.. .|+++++||+++-++.. .+.. +.+.+.. .+
T Consensus 539 ~~~~~~~~~~LSGGqkQRvaLArAL~~--~P~lLLLDEPTs~LD~~-------------~~~~-----l~~~L~~---~g 595 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKLALARAVLR--NADILLLDEPTNHLDTV-------------NVAW-----LVNYLNT---CG 595 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHHHHHHHHHT--TCSEEEEESTTTTCCHH-------------HHHH-----HHHHHHH---SC
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHH-------------HHHH-----HHHHHHh---CC
Confidence 1233344444444443322 39999999999999841 1111 4455544 46
Q ss_pred CcEEEEeecCCCCCchhHHHHHHhhccceEEEe
Q 041690 156 PCKLLLSDTHLGNSTRLLYIYKRWISSIFTVKG 188 (233)
Q Consensus 156 ~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (233)
.+++++++. ...+.++.++++.+..
T Consensus 596 ~tvIivSHd--------l~~l~~~adrii~L~~ 620 (986)
T 2iw3_A 596 ITSITISHD--------SVFLDNVCEYIINYEG 620 (986)
T ss_dssp SEEEEECSC--------HHHHHHHCSEEEEEET
T ss_pred CEEEEEECC--------HHHHHHhCCEEEEEEC
Confidence 777777553 1256777888888763
No 176
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.27 E-value=2.7e-06 Score=71.25 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=36.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.++.+++|.||+|+||||++..++...+...|.+|.+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 47889999999999999999999988874468899999865
No 177
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.26 E-value=3e-06 Score=73.23 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=31.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
..+|..++|.||+||||||++..++........+.++++.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 3688999999999999999999998876633255666664
No 178
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.24 E-value=2e-06 Score=82.30 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..++|.||+|+||||++++++..
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999998543
No 179
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.23 E-value=2e-06 Score=76.48 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.....++|+||||||||++++.++....
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3567889999999999999999998775
No 180
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.23 E-value=1.6e-06 Score=72.35 Aligned_cols=36 Identities=33% Similarity=0.491 Sum_probs=26.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCeEEEEe
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQS-NANVVFMC 55 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~-g~~v~yi~ 55 (233)
..++|+||||+|||++++.++....... +..+++++
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 3599999999999999999988764221 22355554
No 181
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.22 E-value=6.7e-06 Score=72.25 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=35.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.++.++++.||+|+||||++..++..+. ..|.+|++++..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D 134 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAAD 134 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecC
Confidence 4678999999999999999999999888 678999998754
No 182
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=2.6e-06 Score=72.42 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 041690 22 TLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 22 ~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|+|||||||||+++.++....
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 99999999999999999998765
No 183
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.22 E-value=3.1e-06 Score=71.91 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
+...++|+||||||||||++.++...
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34789999999999999999888754
No 184
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.21 E-value=7.2e-06 Score=65.77 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=32.6
Q ss_pred CCC-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDP-ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~-~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
+|. .+++.|+||+||||++..++..++ ..|.+|++++.+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~-~~G~~V~v~d~D 43 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQL-RQGVRVMAGVVE 43 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCCEEEEEeC
Confidence 344 477899999999999999999888 678888887754
No 185
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=3.8e-06 Score=70.18 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=26.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCeEEEEe
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQ-SNANVVFMC 55 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~-~g~~v~yi~ 55 (233)
..++|+||||+|||++++.++...... .+..+++++
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 79 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN 79 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec
Confidence 349999999999999999998876422 123455554
No 186
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.20 E-value=1.6e-06 Score=79.00 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+..++|.|||||||||++..++..+. ..+.+++++...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~-~~g~~Vl~~ApT 241 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAE-SLGLEVGLCAPT 241 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEESS
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEecCc
Confidence 568999999999999999999988777 678888888643
No 187
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.20 E-value=4.7e-06 Score=79.35 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=31.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
...++|+||||||||++|+.++.... ..+.++++++.
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~-~~~~~~i~i~~ 624 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLF-DTEEAMIRIDM 624 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHH-SSGGGEEEECT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhc-CCCCcEEEEec
Confidence 35899999999999999999998776 55678888863
No 188
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.19 E-value=3.3e-06 Score=80.54 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|+|||||+++++..
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHH
Confidence 57899999999999999999998754
No 189
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.18 E-value=6.1e-06 Score=77.83 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|+|||||+++++...
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 588999999999999999999998754
No 190
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.14 E-value=1.5e-06 Score=86.35 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||+..+..-..
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 7999999999999999999997765443
No 191
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.14 E-value=2.2e-06 Score=72.06 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=35.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.++.+++|.||+|+||||++..+|.... ..|++|++++..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D 141 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAAD 141 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHH-hcCCEEEEEccc
Confidence 5788999999999999999999998887 568889998754
No 192
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.13 E-value=4e-06 Score=78.81 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.....++|+||||||||++++.++....
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 3567899999999999999999998765
No 193
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.13 E-value=3.2e-06 Score=81.70 Aligned_cols=25 Identities=28% Similarity=0.374 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
|..++|.||+|+|||||+++++...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 7999999999999999999995443
No 194
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.12 E-value=1.6e-06 Score=85.85 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 799999999999999999999776543
No 195
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.12 E-value=6.5e-06 Score=73.71 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+..++|+||||||||+||+.++.... .+..+.++.
T Consensus 40 ~~~~VLL~GpPGtGKT~LAraLa~~l~--~~~~f~~~~ 75 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIARRLKFAFQ--NARAFEYLM 75 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHHHGGGGBS--SCCEEEEEC
T ss_pred cCCeeEeecCchHHHHHHHHHHHHHHh--hhhHHHHHH
Confidence 567899999999999999997765442 233444443
No 196
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=98.12 E-value=2.6e-05 Score=62.63 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
..|.+.+++||.|+||||-+.+.+.... ..|.+++++.
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~k 54 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIK 54 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEe
Confidence 4688999999999999999999998887 6688888775
No 197
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.08 E-value=1e-05 Score=75.05 Aligned_cols=74 Identities=11% Similarity=0.025 Sum_probs=46.5
Q ss_pred cCHHHHHHHHHHhcccC-CCCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecC
Q 041690 87 EDDEEIKKYFAAFHQHD-KIPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTH 165 (233)
Q Consensus 87 ~~~~~l~~~~~~~~~~~-~~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~ 165 (233)
+..+..+-.++.+-..+ ..|+++++||+++-++.. .. ..+++++..+++.|.+++++++..
T Consensus 545 SgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~-------------~~-----~~i~~~l~~l~~~g~tvi~vtHd~ 606 (670)
T 3ux8_A 545 SGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD-------------DI-----ARLLDVLHRLVDNGDTVLVIEHNL 606 (670)
T ss_dssp CHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHH-------------HH-----HHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHH-------------HH-----HHHHHHHHHHHHCCCEEEEEeCCH
Confidence 33555555555443322 236899999999999831 11 126667777767788888886632
Q ss_pred CCCCchhHHHHHHhhccceEEE
Q 041690 166 LGNSTRLLYIYKRWISSIFTVK 187 (233)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~i~ 187 (233)
. .. .+.|.++.+.
T Consensus 607 -------~-~~-~~~d~i~~l~ 619 (670)
T 3ux8_A 607 -------D-VI-KTADYIIDLG 619 (670)
T ss_dssp -------H-HH-TTCSEEEEEE
T ss_pred -------H-HH-HhCCEEEEec
Confidence 1 23 3578888884
No 198
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.07 E-value=9.7e-06 Score=70.57 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+| .+.|+||+|+|||||+..+....
T Consensus 59 ~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 577 99999999999999999876544
No 199
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.06 E-value=6.6e-06 Score=71.14 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=30.4
Q ss_pred CCCEEEE--EcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEec
Q 041690 18 VDPITLL--SGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCN 56 (233)
Q Consensus 18 ~g~~~ll--~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~ 56 (233)
.+..++| +||||+|||+|+++++...... .+..++|++.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 4568889 9999999999999998776532 1456888873
No 200
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.04 E-value=3.3e-06 Score=83.63 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 799999999999999999999776543
No 201
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.04 E-value=7.8e-06 Score=72.44 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=29.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-eEEEEec
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQSNA-NVVFMCN 56 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~g~-~v~yi~~ 56 (233)
..++|.||||||||+++..++..+. ..+. .++.++.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~-~~~~~~il~~a~ 82 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALI-STGETGIILAAP 82 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH-HTTCCCEEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHH-hcCCceEEEecC
Confidence 4899999999999999999998887 4454 6666653
No 202
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=98.00 E-value=2.4e-05 Score=62.14 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
..|.+.+++||-|+||||.+.+.+.... ..+.+++.+.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~k 63 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFK 63 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEE
Confidence 4788999999999999997777777666 5577776664
No 203
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.99 E-value=5.7e-05 Score=60.64 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=29.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSN----ANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g----~~v~yi~~e 57 (233)
..|..+++.||+|||||+++..++.......+ ..++++...
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~ 118 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPR 118 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESS
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccc
Confidence 36899999999999999988777655432333 267777643
No 204
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.99 E-value=7e-06 Score=64.36 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+|..+.|.|||||||||+++.++.... ..|..++|++..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d 62 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGD 62 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCc
Confidence 5789999999999999999999988776 556666788754
No 205
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.98 E-value=2e-05 Score=73.92 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
|..+.|.||+|+|||||+++++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 8999999999999999999998754
No 206
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.96 E-value=6.3e-06 Score=63.76 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=29.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+|..+.|.|||||||||+++.++.. .+...++++..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d 43 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSD 43 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEccc
Confidence 47889999999999999999977653 34456777654
No 207
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.95 E-value=4.3e-05 Score=64.56 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=35.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.++.+++|.||+|+||||++..++...+ ..|++|++++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~-~~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA-ELGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCC
Confidence 5788999999999999999999998888 668899999754
No 208
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.93 E-value=9.4e-06 Score=67.94 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=34.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
++.++.+.|++|+||||++..++...+ ..|.++++++..
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~-~~g~~v~l~~~D 135 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYK-KKGFKVGLVGAD 135 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEecC
Confidence 478899999999999999999998888 668899999865
No 209
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.92 E-value=1.3e-05 Score=67.08 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
++.++.+.|++|+||||++..++...+ ..++++.+++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEecCC
Confidence 788999999999999999999998888 668899999854
No 210
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.90 E-value=1.3e-05 Score=61.98 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+|..+.|.|+|||||||+++.++.... ..|.++.+++.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~-~~~~~~~~~~~d 50 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ-KEGYRVEVLDGD 50 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEeeHH
Confidence 4788999999999999999999998776 557778888643
No 211
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.86 E-value=0.00016 Score=56.66 Aligned_cols=37 Identities=22% Similarity=0.104 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
....++|++++|.||||.|..++...+ ..|.+|+++.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~vQ 63 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVVQ 63 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEE
Confidence 446789999999999999999999988 7799999985
No 212
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.86 E-value=0.00023 Score=63.44 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
..+|.++.|.||+|||||||+..++.... ..+++|.+...
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~-~~~G~V~l~g~ 329 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLAAG 329 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEECC
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhh-hcCCeEEEecC
Confidence 36889999999999999999999998776 55777877653
No 213
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.85 E-value=8e-06 Score=64.54 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
+...++|+||||||||++|..++..+.
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999998887653
No 214
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.85 E-value=0.00012 Score=76.76 Aligned_cols=35 Identities=31% Similarity=0.330 Sum_probs=25.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+..+|++||||||||++++.++... .+..++.+.
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~---~~~~~~~in 1300 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS---SLYDVVGIN 1300 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC---SSCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC---CCCceEEEE
Confidence 67899999999999999997665432 234455543
No 215
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.84 E-value=5e-05 Score=59.28 Aligned_cols=40 Identities=8% Similarity=-0.076 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhh-----cCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCAS-----QSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~-----~~g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||..+...+..... ..+.+++|+...
T Consensus 37 ~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 37 EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 5678999999999999875544433321 235678888754
No 216
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.81 E-value=1.9e-05 Score=62.33 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=32.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..+|..+.|.||+|||||||++.++.... ..|..+.+|...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~-~~g~~~g~v~~d 59 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS-AQGLPAEVVPMD 59 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH-HTTCCEEEEESG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh-hcCCceEEEecC
Confidence 35789999999999999999999987766 335556666643
No 217
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.80 E-value=0.00021 Score=68.18 Aligned_cols=57 Identities=7% Similarity=-0.013 Sum_probs=39.0
Q ss_pred CCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccce
Q 041690 105 IPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIF 184 (233)
Q Consensus 105 ~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~ 184 (233)
.|.++++||+++-++.. .. ..+++.+..+.+.|.++|+|++.- . .+.. .|.++
T Consensus 826 ~p~LLILDEPTsGLD~~-------------~~-----~~L~~lL~~L~~~G~TVIvI~HdL-------~-~i~~-ADrIi 878 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFE-------------DV-----RKLVEVLHRLVDRGNTVIVIEHNL-------D-VIKN-ADHII 878 (916)
T ss_dssp SSEEEEEESTTTTCCHH-------------HH-----HHHHHHHHHHHHTTCEEEEECCCH-------H-HHTT-CSEEE
T ss_pred CCCEEEEECCCCCCCHH-------------HH-----HHHHHHHHHHHhcCCEEEEEeCCH-------H-HHHh-CCEEE
Confidence 37899999999999831 11 125666666767788888886642 1 3333 78888
Q ss_pred EEEe
Q 041690 185 TVKG 188 (233)
Q Consensus 185 ~i~~ 188 (233)
.+.+
T Consensus 879 vLgp 882 (916)
T 3pih_A 879 DLGP 882 (916)
T ss_dssp EEES
T ss_pred EecC
Confidence 8865
No 218
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.79 E-value=2.2e-05 Score=60.42 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
+..++|.|||||||||+++.++.... ..|.++.+++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~-~~g~~~~~i~ 38 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR-KEGVNYKMVS 38 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH-TTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCcceEEEe
Confidence 56899999999999999999887655 3343355555
No 219
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.79 E-value=2.5e-05 Score=60.20 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.++|.|+|||||||++..++.... ..|.++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~-~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD-NQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH-TTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEEE
Confidence 588999999999999999988766 4566788876
No 220
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.79 E-value=3.2e-05 Score=65.17 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=34.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-CeEEEEecCC
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSN-ANVVFMCNRS 58 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-~~v~yi~~e~ 58 (233)
..+|.++.|.||+|||||||++.++.......| ..+.|++...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 468999999999999999999998877653333 4688887653
No 221
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.78 E-value=3.4e-05 Score=64.76 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+|.++.|.||+||||||++..++.... ..++++.+....
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~-~~~g~V~l~g~D 139 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGD 139 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeec
Confidence 3788999999999999999999998777 557788877643
No 222
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.78 E-value=2.7e-05 Score=59.41 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=25.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
+..++|.|+|||||||+++.++... +..++.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l----~~~~~~~~ 35 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL----PEPWLAFG 35 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS----SSCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc----CCCeEEec
Confidence 4679999999999999999877643 34455544
No 223
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.76 E-value=4.6e-05 Score=66.82 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
++.++.+.||+|+||||++..++...+ ..|.+|+.++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEeecc
Confidence 678899999999999999999998888 668899998754
No 224
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.76 E-value=3e-05 Score=59.46 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
+|..+.|.|++||||||+++.++.... ..|.++++++.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~-~~g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV-CHGIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh-hCCCcEEEECCh
Confidence 678899999999999999999987665 356678877643
No 225
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.74 E-value=1.9e-05 Score=61.72 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||+|||||||++.++..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 37889999999999999999988764
No 226
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=2.1e-05 Score=61.57 Aligned_cols=27 Identities=30% Similarity=0.216 Sum_probs=23.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++..+.|.|||||||||+++.++...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 578899999999999999999888644
No 227
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.74 E-value=0.00015 Score=68.58 Aligned_cols=56 Identities=5% Similarity=-0.043 Sum_probs=39.4
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++|+||+++-++.. .. ..+++.+..+.+.|.+++++++.. . .+ ...+.++.
T Consensus 752 p~lLILDEPTsGLD~~-------------~~-----~~l~~lL~~L~~~G~tVIvisHdl-------~-~i-~~aDrii~ 804 (842)
T 2vf7_A 752 GTVYVLDEPTTGLHPA-------------DV-----ERLQRQLVKLVDAGNTVIAVEHKM-------Q-VV-AASDWVLD 804 (842)
T ss_dssp CEEEEEECTTTTCCHH-------------HH-----HHHHHHHHHHHHTTCEEEEECCCH-------H-HH-TTCSEEEE
T ss_pred CCEEEEECCCCCCCHH-------------HH-----HHHHHHHHHHHhCCCEEEEEcCCH-------H-HH-HhCCEEEE
Confidence 7999999999999831 11 226666777767788888886631 1 34 56888998
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+.+
T Consensus 805 L~p 807 (842)
T 2vf7_A 805 IGP 807 (842)
T ss_dssp ECS
T ss_pred ECC
Confidence 864
No 228
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.73 E-value=2.1e-05 Score=61.53 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+|..+.|.|||||||||+++.++... | .++++..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~----g--~~~i~~d 61 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET----G--LEFAEAD 61 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH----C--CEEEEGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh----C--CeEEccc
Confidence 478999999999999999999887644 2 4556544
No 229
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.72 E-value=0.00068 Score=60.67 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+...++|.|+||+||||++..++..++ ..|.++..++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~-~~G~kVllVd~D 138 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ-RKGWKTCLICAD 138 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEecc
Confidence 3566899999999999999999998888 668899998753
No 230
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.72 E-value=0.00038 Score=54.83 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ--SNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~--~g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||..+...+...... .+.+++|+...
T Consensus 50 ~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 50 LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 91 (220)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence 56779999999999998776655544322 23478888754
No 231
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.70 E-value=0.00019 Score=57.84 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+..++|+||+|+|||.++..++... +.+++++...
T Consensus 107 ~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~ 142 (237)
T 2fz4_A 107 VDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPT 142 (237)
T ss_dssp TTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESS
T ss_pred hCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCC
Confidence 44569999999999999998766533 5678887643
No 232
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.70 E-value=2.4e-05 Score=60.30 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
+|..+.|.||+|||||||++.++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68899999999999999999887654
No 233
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.69 E-value=0.00023 Score=68.22 Aligned_cols=56 Identities=11% Similarity=0.005 Sum_probs=38.5
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++.. .. ..+++.+..+.+.|.+++++++.. . .+ ...+.++.
T Consensus 885 p~lLILDEPTsGLD~~-------------~~-----~~l~~lL~~L~~~G~TVIvisHdl-------~-~i-~~aDrIiv 937 (993)
T 2ygr_A 885 RTVYILDEPTTGLHFD-------------DI-----RKLLNVINGLVDKGNTVIVIEHNL-------D-VI-KTSDWIID 937 (993)
T ss_dssp SEEEEEESTTTTCCHH-------------HH-----HHHHHHHHHHHHTTCEEEEECCCH-------H-HH-TTCSEEEE
T ss_pred CCEEEEECCCCCCCHH-------------HH-----HHHHHHHHHHHhCCCEEEEEcCCH-------H-HH-HhCCEEEE
Confidence 6999999999999831 11 125666666667788888886531 1 23 35788888
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+.+
T Consensus 938 L~p 940 (993)
T 2ygr_A 938 LGP 940 (993)
T ss_dssp EES
T ss_pred ECC
Confidence 864
No 234
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.69 E-value=4e-05 Score=60.11 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.++..+.|.||+||||||++..++.... ..+..+.+++..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~-~~~~~v~~~~~d 59 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR-EQGISVCVFHMD 59 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh-hcCCeEEEeccC
Confidence 4678999999999999999999887665 456677777533
No 235
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.69 E-value=2.9e-05 Score=59.24 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.|||||||||+++.++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46889999999999999999988764
No 236
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.68 E-value=3.7e-05 Score=62.87 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
++..++|.|+|||||||+++.++..+. ..|..+++++.+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~-~~g~~~i~~~~D 41 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS-KNNIDVIVLGSD 41 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEECTH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH-hCCCEEEEECch
Confidence 356799999999999999999887655 456677766643
No 237
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.68 E-value=0.00029 Score=60.39 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=29.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
++|..++|.||+|||||||++.++.... . ....+.+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~-~-~~g~I~ie 209 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIP-F-DQRLITIE 209 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSC-T-TSCEEEEE
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCC-C-CceEEEEC
Confidence 5899999999999999999998876544 2 34455554
No 238
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.68 E-value=2.4e-05 Score=59.47 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
+..+.|.|||||||||+++.++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999987764
No 239
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.68 E-value=4.2e-05 Score=64.88 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=34.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+|.++.|.||+||||||++..++.... ..++++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeec
Confidence 5789999999999999999999998777 567788887643
No 240
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.67 E-value=4.1e-05 Score=64.16 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=34.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..+|.++.|.||+||||||++..++.... ..++++.+....
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~d 137 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGD 137 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeec
Confidence 36889999999999999999999998777 557778777543
No 241
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.67 E-value=3.3e-05 Score=60.98 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
.+|..+.|.|+|||||||+++.++.......|.++++++.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 5788999999999999999999887665334666888864
No 242
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.67 E-value=2.6e-05 Score=61.48 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=23.8
Q ss_pred cCCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 15 ETHVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 15 ~~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
..++|..+.|.||+|||||||++.++...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45799999999999999999999887654
No 243
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.67 E-value=4.8e-05 Score=59.50 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEE
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFM 54 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi 54 (233)
++..+.|.|+|||||||+++.++.... ..| .++..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~-~~g-~~~~~ 37 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE-LKR-DVYLT 37 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT-TTS-CEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh-hcC-CEEEe
Confidence 356799999999999999999987665 334 56544
No 244
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.67 E-value=0.00028 Score=67.39 Aligned_cols=56 Identities=9% Similarity=0.023 Sum_probs=38.4
Q ss_pred CcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccceE
Q 041690 106 PTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIFT 185 (233)
Q Consensus 106 p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
|+++++||+++-++.. .. ..+++.+..+.+.|.+++++++.. . .+ .+.+.++.
T Consensus 867 p~lLILDEPTsGLD~~-------------~~-----~~l~~lL~~L~~~G~TVIvisHdl-------~-~i-~~aDrIiv 919 (972)
T 2r6f_A 867 RTLYILDEPTTGLHVD-------------DI-----ARLLDVLHRLVDNGDTVLVIEHNL-------D-VI-KTADYIID 919 (972)
T ss_dssp CEEEEEECTTTTCCHH-------------HH-----HHHHHHHHHHHHTTCEEEEECCCH-------H-HH-TTCSEEEE
T ss_pred CCEEEEECCCCCCCHH-------------HH-----HHHHHHHHHHHhCCCEEEEEcCCH-------H-HH-HhCCEEEE
Confidence 6999999999999831 11 125666766767788888886531 1 23 35788888
Q ss_pred EEe
Q 041690 186 VKG 188 (233)
Q Consensus 186 i~~ 188 (233)
+.+
T Consensus 920 L~p 922 (972)
T 2r6f_A 920 LGP 922 (972)
T ss_dssp ECS
T ss_pred EcC
Confidence 854
No 245
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.65 E-value=3.2e-05 Score=61.05 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+||||||+++.++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 478999999999999999999887654
No 246
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.65 E-value=3.2e-05 Score=60.36 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.|||||||||+++.++...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 478899999999999999999887654
No 247
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.65 E-value=3.6e-05 Score=58.32 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 689999999999999999999988766
No 248
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.65 E-value=0.00014 Score=66.61 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhh---cCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCAS---QSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~---~~g~~v~yi~~e 57 (233)
.+..++|.|||||||||++..++..+.. ..+.+++.+...
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APT 205 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPT 205 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCC
Confidence 5789999999999999998887766552 234567666543
No 249
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.63 E-value=0.00048 Score=64.89 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC--CCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS--NANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~--g~~v~yi~~e 57 (233)
..+..++|.||+|||||+++-+++....... +..++++...
T Consensus 107 ~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~ 149 (773)
T 2xau_A 107 QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149 (773)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESC
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCch
Confidence 3678899999999999998777755433222 5557777543
No 250
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.63 E-value=2.9e-05 Score=74.42 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|||||||++.++...
T Consensus 697 ~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999999999876543
No 251
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.62 E-value=0.00014 Score=56.60 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhh--cCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCAS--QSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~--~~g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||..+...+..... ..+.+++|+...
T Consensus 39 ~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 80 (206)
T 1vec_A 39 SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPT 80 (206)
T ss_dssp TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSC
T ss_pred cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCc
Confidence 5678999999999999755543333221 235578888754
No 252
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.62 E-value=9.6e-05 Score=58.47 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH-hhh-cCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYN-CAS-QSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~-~~~-~~g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||......+.. ... ..+.+++|+...
T Consensus 50 ~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (224)
T 1qde_A 50 EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 91 (224)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 5677999999999999774333322 221 235578888754
No 253
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.62 E-value=5.8e-05 Score=59.28 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+|..+.|.||+|||||||++.++.... ..+.|++..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~----~~i~~v~~d 40 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG----ERVALLPMD 40 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG----GGEEEEEGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEecC
Confidence 3778999999999999999998876543 157788755
No 254
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.62 E-value=3.9e-05 Score=58.94 Aligned_cols=25 Identities=32% Similarity=0.081 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
+..++|.|||||||||+++.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999887644
No 255
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.61 E-value=0.0001 Score=64.79 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQS-NANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~-g~~v~yi~~e 57 (233)
++.++++.|++|+||||++..+|..++ .. |.+|+.++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~-~~~G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR-EKHKKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH-HTSCCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HhcCCeEEEEecC
Confidence 467888999999999999999999988 55 9999999865
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.61 E-value=3.5e-05 Score=60.53 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..++|.|||||||||++..++...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 578899999999999999999887754
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.61 E-value=3.9e-05 Score=57.99 Aligned_cols=23 Identities=26% Similarity=0.680 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+.|.|||||||||+++.++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999887643
No 258
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.61 E-value=0.00038 Score=64.81 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..+..+++.||+|||||+.+.+.+.......+.+++|+...
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~ 84 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPL 84 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSC
T ss_pred cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCc
Confidence 46889999999999999999877765543467899999765
No 259
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.60 E-value=3.8e-05 Score=59.29 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++..++|.|+|||||||+++.++...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999887644
No 260
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.60 E-value=0.00012 Score=68.29 Aligned_cols=41 Identities=17% Similarity=0.117 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..+..+++.||+|||||+.+...+.......+.+++|+...
T Consensus 37 ~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~ 77 (720)
T 2zj8_A 37 LEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPL 77 (720)
T ss_dssp GGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSS
T ss_pred cCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCc
Confidence 45889999999999999988655544432357899999865
No 261
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.59 E-value=4.1e-05 Score=63.65 Aligned_cols=36 Identities=33% Similarity=0.378 Sum_probs=27.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
..+..++|.|||||||||+++.++... +...++|+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~----~~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET----QGNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT----TTCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh----CCCeEEEec
Confidence 467889999999999999999887643 234667764
No 262
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.59 E-value=3.9e-05 Score=64.64 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+..++|+||||||||+|++.++... +.++.++.
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~----~~~~~~i~ 78 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTM----DLDFHRIQ 78 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHT----TCCEEEEE
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHh----CCCeEEEe
Confidence 45789999999999999999887644 34566554
No 263
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.59 E-value=0.00017 Score=57.96 Aligned_cols=40 Identities=18% Similarity=0.053 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc---CCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ---SNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~---~g~~v~yi~~e 57 (233)
.|..+++.+|+|+|||......+...... .+.+++|+...
T Consensus 65 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt 107 (245)
T 3dkp_A 65 HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPT 107 (245)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCC
Confidence 56779999999999998654333333212 35578888754
No 264
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.59 E-value=3.6e-05 Score=58.66 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
..++|.|+|||||||+++.++.. . ....+++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~--~~~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---N--PGFYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---S--TTEEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---c--CCcEEecH
Confidence 46899999999999999987752 1 23566653
No 265
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00042 Score=67.71 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=33.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..|..+++.||.|+|||+.+...+.... ..+.+++|+...
T Consensus 197 ~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~Pt 236 (1108)
T 3l9o_A 197 DRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPI 236 (1108)
T ss_dssp TTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred HcCCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEcCc
Confidence 5788999999999999998876666555 668899999865
No 266
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.58 E-value=3.7e-05 Score=59.11 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
+|..+.|.|+|||||||+++.++...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999887643
No 267
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.58 E-value=5.1e-05 Score=58.13 Aligned_cols=27 Identities=37% Similarity=0.466 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++..++|.|+|||||||+++.++...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999887643
No 268
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.57 E-value=8.3e-05 Score=59.68 Aligned_cols=40 Identities=8% Similarity=0.000 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ--SNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~--~g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||......+...... .+.+++|+...
T Consensus 66 ~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 107 (237)
T 3bor_A 66 KGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPT 107 (237)
T ss_dssp TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECc
Confidence 56779999999999997755444333211 35678888754
No 269
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.57 E-value=0.00031 Score=57.78 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=34.5
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGP-PCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~Gp-pGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
+..++.|+|+ +|+||||++..+|..++ +.|.+|+.|+..
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA-~~G~rVLLID~D 120 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYA-QAGYKTLIVDGD 120 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHH-hCCCeEEEEeCC
Confidence 5678888876 89999999999999999 789999999865
No 270
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.57 E-value=7e-05 Score=64.24 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=34.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..+|.++.|.||+||||||++..++.... ..++++.+....
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~G~V~l~g~D 194 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGD 194 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcc-ccCCEEEEeccc
Confidence 35889999999999999999999998777 557778777543
No 271
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.57 E-value=5e-05 Score=61.39 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++..+.|.|||||||||+++.++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999888543
No 272
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.55 E-value=9.2e-05 Score=58.08 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEE
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFM 54 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi 54 (233)
++..+.|.|+|||||||++..++.... ..+..+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~-~~~~~v~~~ 43 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC-AAGHRAELL 43 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEe
Confidence 577899999999999999999987765 445556444
No 273
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.55 E-value=4.7e-05 Score=60.83 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++|..+.|.||+|||||||++.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 6899999999999999999998876543
No 274
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.55 E-value=4.4e-05 Score=59.08 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
|.++.|.||+|||||||++.++....
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999998887654
No 275
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.55 E-value=4.5e-05 Score=59.73 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
+|..+.|.||+|||||||++.++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 67889999999999999999887654
No 276
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.54 E-value=6.1e-05 Score=58.16 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.++..++|+|+|||||||+++.++..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35778999999999999999988764
No 277
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.54 E-value=3.6e-05 Score=59.52 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~ 41 (233)
|..+.|.|||||||||+++.++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 45789999999999999998864
No 278
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.54 E-value=4.3e-05 Score=60.83 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++|..+.|.||+|||||||++.++...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999999887644
No 279
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.53 E-value=6.1e-05 Score=58.23 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++..+.|.|+|||||||+++.++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999887643
No 280
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.53 E-value=6.3e-05 Score=60.02 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=27.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+..+++|.|||||||+|.|..++.... +.+|++-
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g------~~hIstG 61 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH------FNHLSSG 61 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC------CEEECHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC------CceEcHH
Confidence 5677899999999999999998876443 5667653
No 281
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.51 E-value=6.5e-05 Score=59.43 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
+++|.|||||||+|.|..++.... +.+|++-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g------~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG------FVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC------CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC------CeEEcHH
Confidence 478899999999999998877443 6777753
No 282
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.51 E-value=0.00024 Score=55.48 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=30.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----CCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ-----SNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----~g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||..+...+...... .+.+++|+...
T Consensus 47 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 91 (216)
T 3b6e_A 47 EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK 91 (216)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESS
T ss_pred cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECH
Confidence 56789999999999999988777654321 25678888754
No 283
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.51 E-value=0.00025 Score=56.26 Aligned_cols=40 Identities=8% Similarity=0.058 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhh--------cCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCAS--------QSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~--------~~g~~v~yi~~e 57 (233)
.|..+++.+|+|+|||......+..... ..+..++|+...
T Consensus 56 ~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt 103 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPT 103 (228)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSS
T ss_pred CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCC
Confidence 6778999999999999765443332211 246678888754
No 284
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.51 E-value=0.00011 Score=56.54 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+.|.|+|||||||+++.++.... ..|..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~-~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK-QKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEe
Confidence 578999999999999999887664 3466666654
No 285
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.50 E-value=5.8e-05 Score=58.14 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
+..++|.|+|||||||+++.++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999887643
No 286
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=97.50 E-value=0.00015 Score=67.45 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..+..+++.||+|||||+.+...+.... ..+.+++|+...
T Consensus 38 ~~~~~~lv~apTGsGKT~~~~l~il~~~-~~~~~~l~i~P~ 77 (702)
T 2p6r_A 38 FSGKNLLLAMPTAAGKTLLAEMAMVREA-IKGGKSLYVVPL 77 (702)
T ss_dssp TTCSCEEEECSSHHHHHHHHHHHHHHHH-HTTCCEEEEESS
T ss_pred hCCCcEEEEcCCccHHHHHHHHHHHHHH-HhCCcEEEEeCc
Confidence 4688999999999999999877766554 347789999865
No 287
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.50 E-value=0.0006 Score=59.78 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLL-FQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa-~~~a~~~~~~~g~~v~yi~~e 57 (233)
+|..+++.||+|||||..+ ..+..... ..|..++|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~-~~g~~~lvl~Pt 40 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV-KKRLRTVILAPT 40 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH-HTTCCEEEEESS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEECcH
Confidence 4678999999999999986 43443444 567789998755
No 288
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.50 E-value=0.00012 Score=57.40 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEE
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVV 52 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~ 52 (233)
++..+.|.|+|||||||++..++.... ..+..+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~-~~~~~~~ 42 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLK-NNNVEVK 42 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEE
Confidence 578899999999999999999987665 3344553
No 289
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.49 E-value=5.4e-05 Score=57.08 Aligned_cols=20 Identities=25% Similarity=0.492 Sum_probs=18.1
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 041690 20 PITLLSGPPCCGKTSLLFQF 39 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~ 39 (233)
..+.|.|||||||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999999977
No 290
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.49 E-value=4.7e-05 Score=61.97 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=28.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..++..++|.|||||||||+++.++... +..+++++..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l----~~~~~~~~~D 66 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF----QGNIVIIDGD 66 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT----TTCCEEECGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc----CCCcEEEecH
Confidence 3467789999999999999999887643 3346666644
No 291
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.48 E-value=7.5e-05 Score=58.35 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
....++|.|+|||||||+++.++...
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999887644
No 292
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.48 E-value=7.6e-05 Score=61.29 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
+...++|+||||||||+|+..++...
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 35679999999999999999887643
No 293
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.48 E-value=7.8e-05 Score=59.09 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++..++|.|+|||||||+++.++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999887644
No 294
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.48 E-value=9e-05 Score=57.83 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
..+..++|.|+|||||||+++.++...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456689999999999999999887644
No 295
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.48 E-value=0.00012 Score=56.64 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+.|.|++||||||++..++.... ..|.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~-~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE-KRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH-HCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEee
Confidence 478999999999999999987765 4466776553
No 296
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.48 E-value=0.00044 Score=57.72 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=34.5
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGP-PCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~Gp-pGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
++.++.|+|+ +|+||||++..+|..++ +.|.+|+.|+..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA-~~G~rVLLID~D 142 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIA-QSDQKVLFIDAD 142 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHH-hCCCcEEEEECC
Confidence 5678888887 89999999999999999 779999999865
No 297
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.47 E-value=0.00011 Score=64.38 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.++..++|.||+||||||++..++.... ...+.++++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~-~~~g~I~~~e 202 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN-SSERNILTVE 202 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC-CTTSCEEEEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEEec
Confidence 5788999999999999999999887665 4456677764
No 298
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.47 E-value=7e-05 Score=58.73 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=29.1
Q ss_pred cCCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCC
Q 041690 15 ETHVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRS 58 (233)
Q Consensus 15 ~~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~ 58 (233)
...++..+.|.|||||||||++..++.... .+.+++...
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----~~~~i~~D~ 55 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----NCSVISQDD 55 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----TEEEEEGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----CcEEEeCCc
Confidence 346788999999999999999997654221 367776553
No 299
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.47 E-value=0.00017 Score=57.97 Aligned_cols=40 Identities=10% Similarity=-0.066 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhh-------cCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCAS-------QSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~-------~~g~~v~yi~~e 57 (233)
.|..+++.+|+|+|||......+..... ..+..++|+...
T Consensus 65 ~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt 111 (242)
T 3fe2_A 65 SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPT 111 (242)
T ss_dssp HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSS
T ss_pred CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCc
Confidence 6778999999999999875544333321 235678888754
No 300
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.46 E-value=8.5e-05 Score=57.95 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+...+.|.|+|||||||+++.++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999987753
No 301
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.44 E-value=7.8e-05 Score=56.87 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+.|.|||||||||+++.++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999887644
No 302
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.43 E-value=7.9e-05 Score=57.19 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
..+.|.|+|||||||+++.++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999887643
No 303
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.43 E-value=5.5e-05 Score=57.88 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=17.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
++..++|.|+|||||||+++.++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999988763
No 304
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.43 E-value=8.2e-05 Score=60.62 Aligned_cols=23 Identities=39% Similarity=0.775 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++|.||||||||||+..++...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68899999999999999887643
No 305
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.43 E-value=0.00014 Score=67.15 Aligned_cols=39 Identities=18% Similarity=0.418 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.....+|.||||||||+.+..++..+. ..+.+++.++..
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~-~~~~~ILv~a~T 242 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQAV-KQGLKVLCCAPS 242 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEESS
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEcCc
Confidence 456899999999999999888887777 667888887653
No 306
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00054 Score=66.34 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+..+++.+|.|+|||..+...+.... ..+.+++|++..
T Consensus 100 ~g~~vLV~apTGSGKTlva~lai~~~l-~~g~rvL~l~Pt 138 (1010)
T 2xgj_A 100 RGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPI 138 (1010)
T ss_dssp HTCEEEEECCTTSCHHHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred cCCCEEEECCCCCChHHHHHHHHHHHh-ccCCeEEEECCh
Confidence 578899999999999998754444333 567899999864
No 307
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.42 E-value=9.4e-05 Score=57.29 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++..+.|.|+|||||||+++.++...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999887643
No 308
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.42 E-value=0.00032 Score=59.76 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=28.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCeEEEEecC
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQ--SNANVVFMCNR 57 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~--~g~~v~yi~~e 57 (233)
+..+++.+|+|+|||..+...+...... .+.+++|+...
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 84 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPS 84 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCC
Confidence 3789999999999998776555444322 46678888754
No 309
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.41 E-value=0.0001 Score=61.77 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++|..+.|.||+|||||||++.++...
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3799999999999999999999888765
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.41 E-value=5.8e-05 Score=60.37 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=18.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHH-HHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFA-YNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a-~~~ 43 (233)
++|..+.|.||+|||||||++.++ ...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999999887 543
No 311
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.41 E-value=0.00012 Score=57.51 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+|..+.|.||+|+|||||+..++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 488999999999999999999887643
No 312
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.40 E-value=0.00023 Score=56.15 Aligned_cols=40 Identities=10% Similarity=0.006 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ--SNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~--~g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||......+...... .+.+++|+...
T Consensus 40 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 81 (219)
T 1q0u_A 40 RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT 81 (219)
T ss_dssp HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc
Confidence 56779999999999998655444433312 35678888754
No 313
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.39 E-value=0.00018 Score=57.67 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEE
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFM 54 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi 54 (233)
.+|..+.|.|||||||||++..++.... . +..++..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~-~-~~~~~~~ 59 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV-K-DYDVIMT 59 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT-T-TSCEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh-c-CCCceee
Confidence 4788999999999999999999988776 4 6666543
No 314
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.38 E-value=7.3e-05 Score=59.22 Aligned_cols=31 Identities=35% Similarity=0.368 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSN 48 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g 48 (233)
++|..+.|.||+|||||||++.++.. ....|
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence 58999999999999999999999876 53333
No 315
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.38 E-value=0.0002 Score=60.86 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=32.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
..+|..+.|.||||+|||||+..++.... ..++++.++..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-~~~g~v~i~~~ 91 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLT-AAGHKVAVLAV 91 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhh-hCCCEEEEEEE
Confidence 36889999999999999999999987666 45667777653
No 316
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.37 E-value=0.0001 Score=58.72 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
++..++|.|+|||||||+++.++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988763
No 317
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.37 E-value=0.00021 Score=54.75 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
-..+.|.|++|||||||+..++..+. ..|.++..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~-~~g~~v~~ik~ 40 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV-REGWRVGTVKH 40 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH-hcCCeeeEEEe
Confidence 35789999999999999999998777 55777776653
No 318
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.37 E-value=0.00034 Score=56.43 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc-----------CCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ-----------SNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~-----------~g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||......+...... .+.+++|+...
T Consensus 59 ~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt 109 (253)
T 1wrb_A 59 EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPT 109 (253)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSS
T ss_pred CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECC
Confidence 67789999999999998654443332211 23578888754
No 319
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.37 E-value=0.00014 Score=58.33 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++..++|.|+|||||||+++.++...
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 466789999999999999999887754
No 320
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.36 E-value=0.00011 Score=57.09 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
+|..+.|.|+|||||||++..++... .|.+++.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l---~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI---PANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS---CGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---CCCceEEEe
Confidence 46789999999999999999887643 134566554
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.36 E-value=0.00012 Score=59.06 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc----CCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ----SNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~----~g~~v~yi~~e 57 (233)
.+|.++.|.||+|||||||++.++...... ....+.|+++.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d 67 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQD 67 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCC
Confidence 588899999999999999999887643210 12357788755
No 322
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.36 E-value=0.00012 Score=58.17 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+..++|.|||||||||+++.++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999887644
No 323
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.36 E-value=0.00021 Score=59.84 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhh-cCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCAS-QSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~-~~g~~v~yi~~e 57 (233)
.+|.++.|.||+|||||||++.++..... ..++.+.+++..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence 57889999999999999999988765431 234556666544
No 324
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.35 E-value=0.00012 Score=57.62 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++|.|||||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999887643
No 325
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.34 E-value=0.00013 Score=59.07 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++..++|.|||||||||+++.++...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 366789999999999999999887643
No 326
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.34 E-value=0.00049 Score=58.98 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ--SNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~--~g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||..+...+...... .+.+++|+...
T Consensus 57 ~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 57 TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 45679999999999998766555444322 35578888754
No 327
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.34 E-value=0.0036 Score=48.44 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=51.1
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHHHh
Q 041690 21 ITLLS-GPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFAAF 99 (233)
Q Consensus 21 ~~ll~-GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 99 (233)
++.|+ +-.|+||||++..+|..++ +.|.+|++++.... .. ...+.+... ..+.+.... ...+.+.+..+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la-~~g~~vlliD~D~~----~~-~~~~~~~~~---~~~~~~~~~-~~~l~~~l~~l 72 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALS-RSGYNIAVVDTDPQ----MS-LTNWSKAGK---AAFDVFTAA-SEKDVYGIRKD 72 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCTT----CH-HHHHHTTSC---CSSEEEECC-SHHHHHTHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHH-HCCCeEEEEECCCC----CC-HHHHHhcCC---CCCcEEecC-cHHHHHHHHHh
Confidence 34555 6788999999999999999 68999999986521 10 011111000 022222222 24555666554
Q ss_pred cccCCCCcEEEEeCCCcc
Q 041690 100 HQHDKIPTAVVVDDFGDL 117 (233)
Q Consensus 100 ~~~~~~p~iIvIDei~~~ 117 (233)
. + .+++||||....+
T Consensus 73 ~--~-~yD~viiD~~~~~ 87 (206)
T 4dzz_A 73 L--A-DYDFAIVDGAGSL 87 (206)
T ss_dssp T--T-TSSEEEEECCSSS
T ss_pred c--C-CCCEEEEECCCCC
Confidence 3 2 3899999997655
No 328
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.33 E-value=4.8e-05 Score=64.29 Aligned_cols=27 Identities=19% Similarity=0.006 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
....++|+||||||||++++.++....
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 345699999999999999998887543
No 329
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.33 E-value=0.00015 Score=54.86 Aligned_cols=26 Identities=23% Similarity=0.129 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.-.++.|.|+|||||||+++.++...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999887643
No 330
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.32 E-value=0.00013 Score=63.03 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=24.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.++|..++|+||||||||||++.++..
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 368899999999999999999988753
No 331
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.32 E-value=0.00015 Score=57.37 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
+..+.|.|||||||||+++.++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988764
No 332
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.31 E-value=0.00013 Score=57.52 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 041690 21 ITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~ 41 (233)
.++|.|||||||||++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998765
No 333
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.31 E-value=0.00013 Score=55.96 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
+..+.|.|+|||||||+++.++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988764
No 334
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.31 E-value=0.00016 Score=58.71 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.++..+.|.||+||||||+++.++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999988753
No 335
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.30 E-value=0.00049 Score=57.92 Aligned_cols=39 Identities=8% Similarity=0.063 Sum_probs=29.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCeEEEEecC
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQ-SNANVVFMCNR 57 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~-~g~~v~yi~~e 57 (233)
+..+++.+|+|+|||..+...+...... .+.+++++...
T Consensus 44 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~ 83 (367)
T 1hv8_A 44 EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPT 83 (367)
T ss_dssp CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCC
Confidence 3689999999999999877666555422 36678888754
No 336
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.30 E-value=0.00015 Score=54.93 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
..+.|.|+|||||||+++.++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999887643
No 337
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.29 E-value=0.00016 Score=56.16 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+.|.|+|||||||+++.++....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999998877543
No 338
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.28 E-value=0.00015 Score=57.34 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
++..++|.|+|||||||+++.++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999887644
No 339
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.28 E-value=9.7e-05 Score=64.95 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=34.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
++.+++|.|+||+||||++..++...+ ..|.+|++++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~-~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ-KRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH-HHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecc
Confidence 346899999999999999999999888 568899999855
No 340
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.26 E-value=0.00053 Score=55.44 Aligned_cols=40 Identities=10% Similarity=-0.040 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ--SNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~--~g~~v~yi~~e 57 (233)
.|..+++.+|+|+|||......+...... .+..++|+...
T Consensus 79 ~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Pt 120 (249)
T 3ber_A 79 QGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPT 120 (249)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSS
T ss_pred CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCC
Confidence 67789999999999998755444333212 24568888754
No 341
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.25 E-value=9.6e-05 Score=57.98 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+.|.|++||||||++..++.... ..|..+.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~-~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR-AAGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH-EEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEe
Confidence 578999999999999999987765 3355555543
No 342
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.25 E-value=0.00034 Score=53.79 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
-..+.|.||+|||||||+..++.... ..+.++..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~-~~g~~v~~i~ 41 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC-ARGIRPGLIK 41 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc-ccCCceeEEe
Confidence 35789999999999999999987766 4565665554
No 343
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.23 E-value=0.002 Score=56.78 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=29.5
Q ss_pred CCCCEEEEEcCCCCcHHH-HHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTS-LLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTt-La~~~a~~~~~~~g~~v~yi~~e 57 (233)
..+..+++.+|+|||||+ ++..++.... ..+..++|+...
T Consensus 17 ~~~~~~lv~a~TGsGKT~~~~~~~l~~~~-~~~~~~lvl~Pt 57 (451)
T 2jlq_A 17 RKKRLTIMDLHPGAGKTKRILPSIVREAL-LRRLRTLILAPT 57 (451)
T ss_dssp STTCEEEECCCTTSSCCTTHHHHHHHHHH-HTTCCEEEEESS
T ss_pred hcCCeEEEECCCCCCHhhHHHHHHHHHHH-hcCCcEEEECCC
Confidence 456777999999999999 4555554444 557788988754
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.22 E-value=0.00022 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+.|.|+|||||||+++.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999887643
No 345
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.21 E-value=0.00042 Score=59.22 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.....+.|.|+||+|||||+..++...+ ..|.++..++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~-~~g~kV~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI-ERGHRVAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH-hCCCceEEEecC
Confidence 3556889999999999999999998887 668888888754
No 346
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.21 E-value=0.00018 Score=56.20 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 041690 21 ITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~ 41 (233)
.+.|.|||||||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999997754
No 347
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.21 E-value=0.00027 Score=57.67 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhh------cCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCAS------QSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~------~~g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||..+...+..... ..+..++|+...
T Consensus 90 ~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt 135 (262)
T 3ly5_A 90 EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPT 135 (262)
T ss_dssp HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSS
T ss_pred CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCC
Confidence 5677999999999999875543333221 246778988754
No 348
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.21 E-value=0.00039 Score=55.21 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEE
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFM 54 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi 54 (233)
+|..+.|.|++||||||++..++..+. ..|.+++..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR-ERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcccc
Confidence 578899999999999999999988776 567777554
No 349
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.21 E-value=0.00024 Score=58.74 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFA 40 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a 40 (233)
+...+.|.|+|||||||++..++
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45578999999999999999887
No 350
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.21 E-value=0.0011 Score=60.74 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+.|.||+|||||||+..++...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 38899999999999999887543
No 351
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.21 E-value=0.001 Score=64.35 Aligned_cols=41 Identities=7% Similarity=0.052 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRS 58 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~ 58 (233)
..|..+++.+|+|+|||+.+...+.... ..+..++|+....
T Consensus 52 l~g~~vlv~apTGsGKTlv~~~~i~~~~-~~g~~vlvl~Ptr 92 (997)
T 4a4z_A 52 EQGDSVFVAAHTSAGKTVVAEYAIAMAH-RNMTKTIYTSPIK 92 (997)
T ss_dssp HTTCEEEEECCTTSCSHHHHHHHHHHHH-HTTCEEEEEESCG
T ss_pred HcCCCEEEEECCCCcHHHHHHHHHHHHH-hcCCeEEEEeCCH
Confidence 3788999999999999986544433333 5678899998653
No 352
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.20 E-value=0.00062 Score=54.24 Aligned_cols=40 Identities=13% Similarity=0.060 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhh------cCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCAS------QSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~------~~g~~v~yi~~e 57 (233)
.|..+++.+|+|+|||......+..... ..+.+++|+...
T Consensus 61 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt 106 (236)
T 2pl3_A 61 QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPT 106 (236)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSS
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCC
Confidence 6778999999999999865543333211 236678888754
No 353
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.18 E-value=0.00021 Score=55.77 Aligned_cols=30 Identities=27% Similarity=0.234 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+.|.|++||||||+++.++. . |..+++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~----g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L----GAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T----TCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C----CCEEEEcc
Confidence 588999999999999997765 2 44555544
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.18 E-value=0.00045 Score=58.32 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCeEEEEecCC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ-SNANVVFMCNRS 58 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~-~g~~v~yi~~e~ 58 (233)
..-++.|.||+|||||||++.++...... .+..+.+++..+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 34489999999999999999887665421 345677777553
No 355
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.18 E-value=0.00024 Score=64.36 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+|..+.|.|++|||||||++.++.......|..+.+++..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 47889999999999999999999887763334467777644
No 356
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.17 E-value=0.00045 Score=59.37 Aligned_cols=40 Identities=8% Similarity=-0.004 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ--SNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~--~g~~v~yi~~e 57 (233)
.|..+++.+|+|+|||..+...+...... .+.+++++...
T Consensus 76 ~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 117 (414)
T 3eiq_A 76 KGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPT 117 (414)
T ss_dssp TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeCh
Confidence 56779999999999998866555544322 46678888754
No 357
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.17 E-value=0.00025 Score=57.78 Aligned_cols=26 Identities=23% Similarity=0.102 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
|..+.|.|+|||||||+++.++....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 88999999999999999998876443
No 358
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.16 E-value=0.0004 Score=58.36 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=27.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..++|+||+|+|||+|+.+++.... ..++|++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~----~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN----LPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT----CCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC----CCEEEEEch
Confidence 6899999999999999999887543 347888743
No 359
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.16 E-value=0.00025 Score=64.96 Aligned_cols=28 Identities=29% Similarity=0.220 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..|..++|+||||||||||++.++....
T Consensus 58 ~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 58 NQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4778999999999999999999987665
No 360
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00023 Score=63.02 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
++|..+.|.||+|||||||++.++.......|...++++
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vd 174 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYIN 174 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEc
Confidence 589999999999999999999988765533230334444
No 361
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.15 E-value=0.00026 Score=55.81 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++|.|+|||||||+++.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999887643
No 362
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.14 E-value=0.00025 Score=55.15 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
+.++|+||+|+|||||+..+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348899999999999999877643
No 363
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.14 E-value=0.00051 Score=55.43 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCe-EEEE
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNAN-VVFM 54 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~-v~yi 54 (233)
+|..+.|.|++||||||++..++..+. ..+.+ +.+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeee
Confidence 678999999999999999999988777 55666 5444
No 364
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.13 E-value=0.00029 Score=56.09 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++|.|||||||||+++.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999887644
No 365
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.13 E-value=0.00076 Score=53.66 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh-h-hcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC-A-SQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~-~-~~~g~~v~yi~~e 57 (233)
.|..+++.+|+|+|||......+... . ...+.+++|+...
T Consensus 60 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 101 (230)
T 2oxc_A 60 CGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPT 101 (230)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 57789999999999997644333222 2 1235678888754
No 366
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.13 E-value=0.00029 Score=56.77 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+..+.|.|||||||||+++.++..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999887644
No 367
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.13 E-value=0.0062 Score=54.52 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=30.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC---CCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS---NANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~---g~~v~yi~~e 57 (233)
.++.+++|.|++|||||++++.++..++... .-.++.++..
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 4688999999999999999999887554222 2345556644
No 368
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.13 E-value=0.00038 Score=53.19 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
+| .++|+||+|||||||+..+...+.
T Consensus 26 ~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 44 899999999999999998876544
No 369
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.12 E-value=0.003 Score=54.78 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.++|..|+|+|||..+..++.......+.+++++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 7899999999999999888776653457789998754
No 370
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.10 E-value=0.0028 Score=55.70 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
....+++|.|+||||||++...++. . .++++++..
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~----~--~~~lVlTpT 193 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN----F--EEDLILVPG 193 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC----T--TTCEEEESC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc----c--CCeEEEeCC
Confidence 4667889999999999999986542 1 345666543
No 371
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.10 E-value=0.00069 Score=57.13 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=33.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.++.+.|..|+||||++..+|..++ +.|.+|+.|+..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA-~~G~rVLlvD~D 51 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMA-RSGKKTLVISTD 51 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHH-HCCCcEEEEeCC
Confidence 5667779999999999999999999 679999999976
No 372
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.09 E-value=0.00023 Score=59.19 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRS 58 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~ 58 (233)
++.++.|.||+||||||+++.++.... ..+.++.+++...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg-~~~~~~~vI~~D~ 43 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR-REGVKAVSIEGDA 43 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH-HHTCCEEEEEGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh-hcCCCeeEeecch
Confidence 456899999999999999999887554 3345577777553
No 373
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.09 E-value=0.00031 Score=54.47 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~ 41 (233)
+...+.|.|++||||||+++.++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999999997765
No 374
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.09 E-value=0.0012 Score=58.27 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=31.2
Q ss_pred cCCCCCEEEEEcCCCCcHHHH-HHHHHHHhhhcCCCeEEEEecC
Q 041690 15 ETHVDPITLLSGPPCCGKTSL-LFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 15 ~~~~g~~~ll~GppGsGKTtL-a~~~a~~~~~~~g~~v~yi~~e 57 (233)
....+..+++.+|+|||||+. +..+..... ..+.+++|+...
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~-~~~~~~lvl~Pt 59 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAI-QQRLRTAVLAPT 59 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHH-HTTCCEEEEECS
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEECch
Confidence 346789999999999999997 444443333 567789998754
No 375
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.09 E-value=0.00026 Score=55.55 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.|..++|.||+|+|||+|+..++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 6788999999999999999977653
No 376
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.09 E-value=0.00084 Score=60.01 Aligned_cols=39 Identities=8% Similarity=0.045 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCeEEEEecC
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQ--SNANVVFMCNR 57 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~--~g~~v~yi~~e 57 (233)
+..+++.+|+|+|||..+...+...... .+.+++|+...
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~ 198 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPS 198 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSC
T ss_pred CCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECc
Confidence 3889999999999998765544443312 24578998765
No 377
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.08 E-value=0.00069 Score=58.47 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=34.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRS 58 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~ 58 (233)
.+..++|.||+|+|||++++.++.... ..|..+++++..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~~~~~~~D~~~ 73 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQGSRVIIIDPER 73 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEESSC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-HCCCEEEEEeCCc
Confidence 577899999999999999999988776 6677888888763
No 378
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.08 E-value=0.00051 Score=57.58 Aligned_cols=32 Identities=34% Similarity=0.381 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
+..++|+||+|+|||+|+++++... + ++|++.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~----~--~~~~~~ 62 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER----P--GILIDC 62 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS----S--EEEEEH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc----C--cEEEEe
Confidence 5899999999999999999887642 2 788863
No 379
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.07 E-value=0.0036 Score=55.81 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQS----NANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~----g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||..+...+....... +.+++++...
T Consensus 21 ~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 21 NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 467799999999999988776665554222 6778888754
No 380
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.07 E-value=0.00039 Score=57.83 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=30.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC--CCeEEEEecCC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS--NANVVFMCNRS 58 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~--g~~v~yi~~e~ 58 (233)
.++.++.|.||+|||||||++.++....... -..+.+|+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~ 72 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD 72 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccc
Confidence 4677899999999999999998887765221 12344446553
No 381
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.07 E-value=0.00095 Score=57.42 Aligned_cols=40 Identities=10% Similarity=0.147 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhh--cCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCAS--QSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~--~~g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||......+..... ..+.+++++...
T Consensus 73 ~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt 114 (410)
T 2j0s_A 73 KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPT 114 (410)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSS
T ss_pred CCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCc
Confidence 5677999999999999876655544431 246788888754
No 382
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.07 E-value=0.00072 Score=54.66 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+..++.+.|.+|+||||++..++...+ .|.++..++.+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 4667888999999999999999998877 58889998855
No 383
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.07 E-value=0.0027 Score=54.01 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=29.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ--SNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~--~g~~v~yi~~e 57 (233)
..+..+++.+|+|+|||..+...+...... .+.+++++...
T Consensus 43 ~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 85 (391)
T 1xti_A 43 ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 85 (391)
T ss_dssp TTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred hcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCC
Confidence 357789999999999998776555444312 25578888754
No 384
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.06 E-value=0.00058 Score=57.99 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..++..+.|.|+||+|||||+..++.... ..+.++..++..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-~~~~~v~v~~~d 93 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI-REGLKVAVIAVD 93 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeec
Confidence 35788999999999999999999988777 557777777643
No 385
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.05 E-value=0.00062 Score=62.54 Aligned_cols=40 Identities=33% Similarity=0.527 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
....++|.||||||||+++..++..+....+.+++.++..
T Consensus 194 ~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 194 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred cCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 4568999999999999999988877763357778877653
No 386
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.03 E-value=0.0019 Score=59.27 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcCCCCcHHHH-HHHHHHHhhhcCCCeEEEEecC
Q 041690 16 THVDPITLLSGPPCCGKTSL-LFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtL-a~~~a~~~~~~~g~~v~yi~~e 57 (233)
...+..+++.+|+|||||+. +..++..+. ..+.+++|+...
T Consensus 183 l~~g~dvlv~a~TGSGKT~~~~lpil~~l~-~~~~~vLvl~Pt 224 (618)
T 2whx_A 183 FRKKRLTIMDLHPGAGKTKRILPSIVREAL-KRRLRTLILAPT 224 (618)
T ss_dssp GSTTCEEEECCCTTSSTTTTHHHHHHHHHH-HTTCCEEEEESS
T ss_pred HhcCCeEEEEcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEcCh
Confidence 46889999999999999996 455555554 456788988754
No 387
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.01 E-value=0.00093 Score=58.71 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=29.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHH-HHHHHhhhcCCCeEEEEecC
Q 041690 16 THVDPITLLSGPPCCGKTSLLF-QFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~-~~a~~~~~~~g~~v~yi~~e 57 (233)
...|..+++.||+|||||..+. .+...+. ..+..++|+...
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~-~~~~~~lil~Pt 46 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECA-RRRLRTLVLAPT 46 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHH-HTTCCEEEEESS
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHH-hcCCeEEEEcch
Confidence 3578899999999999999753 3333333 556778888754
No 388
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.01 E-value=0.00053 Score=57.84 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
..++|.||+|||||||+..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999987763
No 389
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.00 E-value=0.00049 Score=55.20 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCeEEEE
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQS----NANVVFM 54 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~----g~~v~yi 54 (233)
.+|..+.|.||+||||||++..++..+. .. |.++++.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~-~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ-ERLGPAGRHVVVT 63 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH-HHHGGGTCCEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-hhccccceeeeee
Confidence 4788999999999999999999988776 33 6677644
No 390
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.98 E-value=0.00085 Score=57.96 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCeEEEE
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-SNANVVFM 54 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-~g~~v~yi 54 (233)
.+|..++|.||||||||+|+.+++...... .+..++|+
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~ 210 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 210 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEE
Confidence 589999999999999999999998876632 24457775
No 391
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.98 E-value=0.00079 Score=57.42 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
++..+.|.|+||+|||||+..++.... ..+.++..+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~-~~~~~v~V~~ 109 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT-ERGHKLSVLA 109 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh-hcCCeEEEEe
Confidence 467899999999999999999987666 4456666654
No 392
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.98 E-value=0.00045 Score=58.62 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~ 41 (233)
++..++|.||+|||||+|+..+|.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999997765
No 393
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.97 E-value=0.00047 Score=55.84 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc----CCCeEEEEecCC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ----SNANVVFMCNRS 58 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~----~g~~v~yi~~e~ 58 (233)
+..++.|.|+|||||||++..++...... .+..++++++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~ 65 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS 65 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc
Confidence 34578999999999999999888744311 134577777653
No 394
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.97 E-value=0.00041 Score=57.48 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 041690 20 PITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~ 41 (233)
..++|.|+|||||||+++.++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998876
No 395
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.97 E-value=0.00046 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~ 41 (233)
+..+.|.|++||||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999997764
No 396
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=96.96 E-value=0.00073 Score=56.21 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||..+...+. ..+.+++++...
T Consensus 30 ~~~~~lv~~~TGsGKT~~~~~~~~----~~~~~~liv~P~ 65 (337)
T 2z0m_A 30 QGKNVVVRAKTGSGKTAAYAIPIL----ELGMKSLVVTPT 65 (337)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHH----HHTCCEEEECSS
T ss_pred cCCCEEEEcCCCCcHHHHHHHHHH----hhcCCEEEEeCC
Confidence 567899999999999987765443 236778888754
No 397
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.95 E-value=0.00047 Score=55.09 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=27.3
Q ss_pred cCCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 15 ETHVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 15 ~~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
...+|..+.|.||+||||||+++.++. . ++.+.+..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~----~-~g~v~~~~ 51 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEK----Y-KNDICLLT 51 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGG----G-TTTEEEEC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHh----c-cCCeEEEe
Confidence 346889999999999999999996544 2 44566553
No 398
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.95 E-value=0.00069 Score=57.72 Aligned_cols=40 Identities=13% Similarity=0.069 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ--SNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~--~g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||..+...+...... .+.+++|+...
T Consensus 57 ~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 98 (394)
T 1fuu_A 57 EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 98 (394)
T ss_dssp HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCC
Confidence 46678999999999998754444333212 35688888754
No 399
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.95 E-value=0.00064 Score=54.42 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
..++..+.|.|++||||||+++.++..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999987753
No 400
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.95 E-value=0.00054 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.+.|.|++||||||+++.++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999887643
No 401
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.93 E-value=0.001 Score=52.69 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-eEEEE
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNA-NVVFM 54 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~-~v~yi 54 (233)
+|..+.|.|++||||||++..++..+. ..|. .+++.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~~v~~~ 38 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE-QLGIRDMVFT 38 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCCcceee
Confidence 477899999999999999999988777 5555 55444
No 402
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.93 E-value=0.00059 Score=60.03 Aligned_cols=41 Identities=20% Similarity=0.024 Sum_probs=30.3
Q ss_pred cCCCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 15 ETHVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 15 ~~~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
...+|..+.|.||+|||||||++.++.... . ...++.+..+
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-~-~~G~i~~~G~ 193 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTR-A-DVIVVGLIGE 193 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSC-C-SEEEEEEESC
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccC-C-CeEEEEEece
Confidence 346999999999999999999998887654 2 2234445443
No 403
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.92 E-value=0.00066 Score=57.92 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=25.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 16 THVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 16 ~~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+|..+.|.||+|||||||++.++....
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36999999999999999999998887654
No 404
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.92 E-value=0.00051 Score=61.65 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=28.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
++|..++|.||+||||||+++.++.... ...+++.+.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitie 294 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIE 294 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEc
Confidence 4788899999999999999998765443 344566664
No 405
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.92 E-value=0.0023 Score=56.92 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQS----NANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~----g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||..+...+....... +.+++++...
T Consensus 18 ~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 18 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 567799999999999988776665554232 6778888754
No 406
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.90 E-value=0.00058 Score=59.63 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~ 41 (233)
..+..++|.|+|||||||+++.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999997654
No 407
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.90 E-value=0.0017 Score=54.05 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCCCcHHHHHH-HHHHHhhh-cCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLF-QFAYNCAS-QSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~-~~a~~~~~-~~g~~v~yi~~e 57 (233)
++..+++.+|+|||||.... .+...+.. ..+..++|+...
T Consensus 130 ~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Pt 171 (300)
T 3fmo_B 130 PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (300)
T ss_dssp SCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCc
Confidence 34889999999999997543 23322221 123468888754
No 408
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.89 E-value=0.00055 Score=52.50 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.|..++|.|+||+||||++..+...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 6789999999999999999987764
No 409
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.87 E-value=0.0038 Score=57.63 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQS----NANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~----g~~v~yi~~e 57 (233)
.|..+++.+|.|+|||..+...+....... +.+++++...
T Consensus 27 ~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt 70 (696)
T 2ykg_A 27 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 70 (696)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSS
T ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECC
Confidence 577899999999999998877766544222 2678888643
No 410
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.87 E-value=0.00065 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..+.|.||+|||||||+..++....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999988776
No 411
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.87 E-value=0.00064 Score=54.35 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-SNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-~g~~v~yi~~e 57 (233)
.+|..+.|.|++||||||++..++..+. . .|.++++++.|
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~-~~~g~~v~~~tre 59 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS-EIYGVNNVVLTRE 59 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCGGGEEEEES
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh-hccCceeeEeeeC
Confidence 4788999999999999999999998777 4 56677774433
No 412
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.84 E-value=0.0098 Score=51.27 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
....++|+|++|||||++++.+..... ....+++-++
T Consensus 159 ~~~~vli~Ge~GtGK~~lAr~ih~~s~-r~~~~fv~v~ 195 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVARLIHKLSD-RSKEPFVALN 195 (387)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHST-TTTSCEEEEE
T ss_pred CCCCeEEecCCCcCHHHHHHHHHHhcC-CCCCCeEEEe
Confidence 456689999999999999987765443 4456677665
No 413
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.84 E-value=0.0012 Score=54.82 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=35.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.++.++.|+|-.|+||||++..+|..++ +.|.+|+.|+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D 78 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS-ILGKRVLQIGCD 78 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEES
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH-HCCCeEEEEeCC
Confidence 3667888889999999999999999999 679999999865
No 414
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.83 E-value=0.00084 Score=50.08 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
...++|+||+|+|||+++.++...+.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 46899999999999999998876553
No 415
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.82 E-value=0.00077 Score=52.55 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.....+.|+|++||||||+++.++..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45567889999999999999987763
No 416
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.82 E-value=0.0075 Score=48.41 Aligned_cols=36 Identities=28% Similarity=0.226 Sum_probs=30.4
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 21 ITLL-SGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 21 ~~ll-~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
++.| .+-.|+||||++..+|..++ +.|.+|+.|+..
T Consensus 4 vi~v~s~kgGvGKTt~a~~LA~~la-~~g~~VlliD~D 40 (260)
T 3q9l_A 4 IIVVTSGKGGVGKTTSSAAIATGLA-QKGKKTVVIDFA 40 (260)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHH-hCCCcEEEEECC
Confidence 4445 56788999999999999999 679999999865
No 417
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.81 E-value=0.00055 Score=58.61 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=24.6
Q ss_pred CC--CCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HV--DPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~--g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+ +..+.|.||+|||||||++.++....
T Consensus 166 ~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 166 RPFFAKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp GGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred HHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46 88999999999999999998887654
No 418
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.80 E-value=0.0014 Score=56.05 Aligned_cols=39 Identities=8% Similarity=0.051 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCeEEEEecC
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQ--SNANVVFMCNR 57 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~--~g~~v~yi~~e 57 (233)
+..+++.+|+|+|||..+...+...... .+.+++|+...
T Consensus 64 ~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 104 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 104 (412)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCC
Confidence 4889999999999998765444433312 24478888754
No 419
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=96.80 E-value=0.0029 Score=55.31 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH-Hhhh------cCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAY-NCAS------QSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~-~~~~------~~g~~v~yi~~e 57 (233)
.|..+++.+|+|+|||.....-+. .+.. ..+..++++...
T Consensus 92 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Pt 138 (434)
T 2db3_A 92 SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPT 138 (434)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSS
T ss_pred cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecC
Confidence 678899999999999984433222 2221 124578888754
No 420
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.80 E-value=0.021 Score=50.52 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEE
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFM 54 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi 54 (233)
.+|..++|.|++|+|||+|+.+++.+.+...+.-++|+
T Consensus 151 gkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~ 188 (482)
T 2ck3_D 151 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188 (482)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE
T ss_pred ccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE
Confidence 38999999999999999999999988763334445664
No 421
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.78 E-value=0.0014 Score=61.80 Aligned_cols=40 Identities=33% Similarity=0.527 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+..++|.||||||||+++..++..+....+.+++.++..
T Consensus 370 ~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~t 409 (800)
T 2wjy_A 370 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 409 (800)
T ss_dssp TSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESS
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCc
Confidence 4578999999999999999988877763356778777643
No 422
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.78 E-value=0.00078 Score=55.39 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.+.|.||+|+|||||++.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999887654
No 423
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.77 E-value=0.00077 Score=56.61 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
+..++|.||+|||||+|+..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 457889999999999999987763
No 424
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.77 E-value=0.00085 Score=56.24 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
+..++|.||+|||||+|+..++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 457889999999999999988764
No 425
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.77 E-value=0.0012 Score=60.56 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
++..+.|.|+|||||||+++.++..+. ..|.++++++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~-~~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV-CHGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEech
Confidence 567899999999999999999988765 44667777764
No 426
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.75 E-value=0.0016 Score=57.65 Aligned_cols=37 Identities=27% Similarity=0.218 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEE
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFM 54 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi 54 (233)
+|..++|+||||+|||+|+..++.+.....+.-++|+
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 7899999999999999999999887765555556665
No 427
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.75 E-value=0.003 Score=54.50 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=30.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..|..+++.+|+|+|||......+.... ..+..++|+...
T Consensus 34 ~~~~~~lv~apTGsGKT~~~l~~~~~~~-~~~~~~lil~Pt 73 (414)
T 3oiy_A 34 VQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPT 73 (414)
T ss_dssp TTTCCEECCSCSSSSHHHHHHHHHHHHH-TTTCCEEEEESS
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEEECC
Confidence 4677899999999999995554444444 567889998764
No 428
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.75 E-value=0.002 Score=58.64 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
+..++++.|.+|+||||++..+|..++ +.|.++++|+..
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA-~~G~rVLlvd~D 45 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLA-EQGKRVLLVSTD 45 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHH-HCCCcEEEEECC
Confidence 567889999999999999999999999 779999999976
No 429
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.74 E-value=0.00097 Score=56.92 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.++|.|||||||||+++.++....
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 489999999999999998887554
No 430
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.73 E-value=0.0026 Score=57.24 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcC------CCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQS------NANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~------g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||......+....... +.+++|+...
T Consensus 110 ~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Pt 155 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 155 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCc
Confidence 578899999999999985443333322121 3478888754
No 431
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.73 E-value=0.004 Score=56.51 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhc--------CCCeEEEEecC
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQ--------SNANVVFMCNR 57 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~--------~g~~v~yi~~e 57 (233)
...+++.+|+|+|||..+..++..+... .+.+++|+...
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~ 244 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADR 244 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-
T ss_pred CCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCC
Confidence 4668999999999999998888766532 45789998764
No 432
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.72 E-value=0.00094 Score=56.70 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
..+.|.||+|||||||+..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 478999999999999999887643
No 433
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.71 E-value=0.0026 Score=56.05 Aligned_cols=39 Identities=8% Similarity=0.051 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCeEEEEecC
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCASQ--SNANVVFMCNR 57 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~~~--~g~~v~yi~~e 57 (233)
+..+++.||+|||||......+...... .+..++|+...
T Consensus 131 ~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 171 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (479)
T ss_dssp CCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSS
T ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeCh
Confidence 4899999999999998765444433312 23378888765
No 434
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.67 E-value=0.0015 Score=52.18 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=31.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 22 TLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 22 ~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
+.|.|-.|+||||++..+|..++ +.|.+|+.|+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D 37 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA-SDYDKIYAVDGD 37 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT-TTCSCEEEEEEC
T ss_pred EEEecCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCC
Confidence 55699999999999999999999 778999999865
No 435
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.67 E-value=0.0043 Score=54.51 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+..++|.+|+|+|||..+..++... +.+++++...
T Consensus 107 ~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~ 142 (472)
T 2fwr_A 107 VDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPT 142 (472)
T ss_dssp TTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESS
T ss_pred hcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECC
Confidence 45669999999999999988766543 5778888755
No 436
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.65 E-value=0.0012 Score=59.78 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHh---hhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNC---ASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~---~~~~g~~v~yi~ 55 (233)
..+.+.|+||+|+|||||+.+++... .......+.|++
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~ 186 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS 186 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE
Confidence 45789999999999999999887543 212234577776
No 437
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.64 E-value=0.0011 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
-.+.|.||+|+|||||+..++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36789999999999999988764
No 438
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.62 E-value=0.019 Score=52.03 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcC---CCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQS---NANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~---g~~v~yi~~e 57 (233)
...++||.|.+|+|||++++.++..++... ..+++.||..
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 568999999999999999999888776332 3456667755
No 439
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.62 E-value=0.0018 Score=58.88 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC-CeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSN-ANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g-~~v~yi~~e 57 (233)
.+..+.|.|+|||||||+++.++..+. ..| .++++++.+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~-~~G~~~~~~lD~D 434 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN-QQGGRSVSLLLGD 434 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HHCSSCEEEEEHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc-ccCCceEEEECcH
Confidence 567899999999999999999988766 334 678888754
No 440
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=96.62 E-value=0.0015 Score=57.20 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=35.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCc
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSR 59 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~ 59 (233)
....+++|.|++|+|||+++..++.... ..|.+++.+|..+.
T Consensus 51 ~~~~h~~i~G~tGsGKs~~~~~li~~~~-~~g~~viv~Dpkge 92 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVLLRELAYTGL-LRGDRMVIVDPNGD 92 (437)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHHHHHHH-HTTCEEEEEEETTH
T ss_pred cCcceEEEECCCCCCHHHHHHHHHHHHH-HCCCcEEEEeCCCc
Confidence 4678999999999999999988877776 56788888887753
No 441
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.61 E-value=0.0012 Score=51.08 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+.|.||+|+|||||+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 442
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=96.61 E-value=0.0034 Score=58.16 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLL-FQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa-~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+..+++.||+|||||+.+ ..+...+. ..+..++|+...
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~-~~~~~~lilaPT 279 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAI-QKRLRTAVLAPT 279 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHH-HTTCCEEEEESS
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH-hCCCcEEEEccH
Confidence 7899999999999999974 44443334 567788888754
No 443
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0016 Score=61.46 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+..++|.||||||||+++..++..+....+.+++.++..
T Consensus 374 ~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 374 QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 4668999999999999998888776653356778777653
No 444
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.61 E-value=0.0028 Score=52.51 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=33.4
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGP-PCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~Gp-pGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
++.+++|+|+ +|+||||++..+|..++ +.|.+|+.|+..
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA-~~G~rVLLID~D 130 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVIS-QTNKRVLLIDCD 130 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHH-TTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHH-hCCCCEEEEecc
Confidence 5567777765 89999999999999999 779999999865
No 445
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.61 E-value=0.0012 Score=53.01 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
+..+.|.|++||||||++..++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5678999999999999999887754
No 446
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.59 E-value=0.0022 Score=52.00 Aligned_cols=36 Identities=8% Similarity=0.071 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
++.|.|..|+||||++..+|..++ +.|.+|+.||..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la-~~G~~VlliD~D 38 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLH-AMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH-TTTCCEEEEEEC
T ss_pred EEEEecCCCCcHHHHHHHHHHHHH-HCCCcEEEEcCC
Confidence 466689999999999999999999 779999999865
No 447
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=96.59 E-value=0.0083 Score=56.54 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQS----NANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~----g~~v~yi~~e 57 (233)
.|..+++.+|.|+|||..+...+....... +.+++++...
T Consensus 262 ~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt 305 (797)
T 4a2q_A 262 NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 305 (797)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCC
Confidence 577899999999999988776665554232 6788888754
No 448
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.59 E-value=0.00055 Score=62.59 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 041690 20 PITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~ 41 (233)
..++|+||||||||+||+.++.
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSST
T ss_pred cceEEECCCchHHHHHHHHHHH
Confidence 3799999999999999995554
No 449
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.58 E-value=0.0014 Score=56.15 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|..+.|.||||+|||||+..++..
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcc
Confidence 47889999999999999999977643
No 450
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.58 E-value=0.0014 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~ 41 (233)
+..+.|.|++||||||+++.++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999997765
No 451
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=96.57 E-value=0.0051 Score=59.33 Aligned_cols=39 Identities=21% Similarity=0.094 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCC--CeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSN--ANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g--~~v~yi~~e 57 (233)
.+..++|.++.|+|||..+..++.... ..| .+++++...
T Consensus 169 ~~~~~LLad~tGlGKTi~Ai~~i~~l~-~~g~~~rvLIVvP~ 209 (968)
T 3dmq_A 169 HAPRVLLADEVGLGKTIEAGMILHQQL-LSGAAERVLIIVPE 209 (968)
T ss_dssp SSCEEEECCCTTSCHHHHHHHHHHHHH-HTSSCCCEEEECCT
T ss_pred cCCCEEEECCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEeCH
Confidence 467899999999999999988887766 333 479998765
No 452
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.57 E-value=0.0017 Score=58.12 Aligned_cols=41 Identities=5% Similarity=-0.023 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhh-cCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCAS-QSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~-~~g~~v~yi~~e 57 (233)
..+..+.|.|.+||||||+++.++..+.. ..+..+.|++..
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD 434 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN 434 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCC
Confidence 35678899999999999999999988773 234566677643
No 453
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.56 E-value=0.0021 Score=58.14 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
.+..+.|.|+|||||||+++.++..+. ..|.++.+++.+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~-~~G~~~~~ld~D 409 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQ-ARGRKVTLLDGD 409 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEECHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhh-hcCCeEEEECch
Confidence 467889999999999999999988766 557788888744
No 454
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.56 E-value=0.0012 Score=57.83 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=22.4
Q ss_pred CCCCE--EEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPI--TLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~--~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+|.. +.|.||+|+|||||+..++..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 68898 999999999999999988653
No 455
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.55 E-value=0.0014 Score=54.66 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
..|..+.|.||||+|||||+..++ ...
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 578999999999999999999988 444
No 456
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.54 E-value=0.0025 Score=57.26 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
....+++.|.|||||||+++.++..+. ..+..+..++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~-~~~~d~~v~s 70 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN-WIGVPTKVFN 70 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh-hcCCCeEEec
Confidence 456789999999999999999987665 4455555554
No 457
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.54 E-value=0.0043 Score=56.25 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhc------CCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQ------SNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~------~g~~v~yi~~e 57 (233)
.+..+++.+|+|+|||......+...... .+..++++...
T Consensus 59 ~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Pt 104 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 104 (579)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcch
Confidence 57889999999999998544333322212 13478888754
No 458
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.54 E-value=0.00072 Score=52.59 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=22.4
Q ss_pred cCCCCCEEEEEcCCCCcHHHHHHHHH
Q 041690 15 ETHVDPITLLSGPPCCGKTSLLFQFA 40 (233)
Q Consensus 15 ~~~~g~~~ll~GppGsGKTtLa~~~a 40 (233)
...++..+.|.|++|+|||||+..++
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 34688899999999999999999654
No 459
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.53 E-value=0.003 Score=53.75 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
...++++.|.+|+||||++..+|..++ +.|.+|+.|+..
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA-~~G~rVLlvD~D 63 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLA-EKGLKVVIVSTD 63 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHH-HSSCCEEEEECC
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHH-HCCCeEEEEeCC
Confidence 344566779999999999999999999 679999999976
No 460
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.51 E-value=0.0033 Score=49.22 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
....++|.|++|+|||||+..++.... .. .++..++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~-~~-~~~~~i~~ 65 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG-NE-VKIGAMLG 65 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT-TT-SCEEEEEC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc-cC-CeEEEEec
Confidence 445788999999999999999987654 32 45666653
No 461
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.51 E-value=0.0015 Score=56.68 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
...+.|.||+|||||+|+..++....
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 34788999999999999998887544
No 462
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.50 E-value=0.002 Score=51.25 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
+|..+.|.|++||||||++..++..+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999998887665
No 463
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.49 E-value=0.0015 Score=49.45 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~ 41 (233)
++..+.|.|+||+|||||+..++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999998764
No 464
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.49 E-value=0.0019 Score=50.64 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
....++|+||+|+||||++.++...+.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999998876555
No 465
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=96.48 E-value=0.032 Score=49.62 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=28.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+|...+|.|++|+|||+|+.....+.+ ..+..++|+-
T Consensus 161 grGQR~~Ifg~~g~GKT~Lal~~I~~~~-~~dv~~V~~~ 198 (507)
T 1fx0_A 161 GRGQRELIIGDRQTGKTAVATDTILNQQ-GQNVICVYVA 198 (507)
T ss_dssp BTTCBCBEEESSSSSHHHHHHHHHHTCC-TTTCEEEEEE
T ss_pred ccCCEEEEecCCCCCccHHHHHHHHHhh-cCCcEEEEEE
Confidence 4999999999999999999764444444 3444567763
No 466
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.48 E-value=0.0027 Score=52.27 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
++.|+|-.|+||||++..+|..++ +.|.+|+.||..
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La-~~G~rVlliD~D 39 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALA-EMGKKVMIVGCD 39 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHH-HCCCeEEEEecC
Confidence 566789999999999999999999 679999999866
No 467
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.47 E-value=0.0022 Score=57.03 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
++ ..+.|.||+|||||||++.++....
T Consensus 28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 28 DE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 46 8999999999999999998886554
No 468
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.47 E-value=0.011 Score=62.22 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=44.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecCCcccccccccccccCCchhhhcceEEEEecCHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNRSRLQSKRPYLSQSIDPSSHVFKLIQMKYVEDDEEIKKYFA 97 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 97 (233)
-+...++.||||||||++++.+|... |..++.+... +.. + ...+..+|.
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~l----g~~~v~~nc~----e~l-------d----------------~~~lg~~~~ 692 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNL----GRVVVVFNCD----DSF-------D----------------YQVLSRLLV 692 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTT----TCCCEEEETT----SSC-------C----------------HHHHHHHHH
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHh----CCcEEEEECC----CCC-------C----------------hhHhhHHHH
Confidence 55678899999999999999887744 4556555311 100 0 334455555
Q ss_pred HhcccCCCCcEEEEeCCCcccc
Q 041690 98 AFHQHDKIPTAVVVDDFGDLFD 119 (233)
Q Consensus 98 ~~~~~~~~p~iIvIDei~~~~~ 119 (233)
.+... ..++++||++.+-.
T Consensus 693 g~~~~---Gaw~~~DE~nr~~~ 711 (2695)
T 4akg_A 693 GITQI---GAWGCFDEFNRLDE 711 (2695)
T ss_dssp HHHHH---TCEEEEETTTSSCH
T ss_pred HHHhc---CCEeeehhhhhcCh
Confidence 44322 57999999987654
No 469
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.46 E-value=0.0037 Score=53.97 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCeEEEEe
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQ-SNANVVFMC 55 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~-~g~~v~yi~ 55 (233)
.+|...+|.||||+|||+|+.+++...... .+..++|+-
T Consensus 173 grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~l 212 (427)
T 3l0o_A 173 GKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILL 212 (427)
T ss_dssp BTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred cCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEE
Confidence 589999999999999999999998876632 355667753
No 470
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.46 E-value=0.0018 Score=48.48 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 041690 20 PITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~ 41 (233)
..+.|.|+||+|||||+.+++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3588999999999999998764
No 471
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.45 E-value=0.0016 Score=55.82 Aligned_cols=57 Identities=7% Similarity=0.077 Sum_probs=38.9
Q ss_pred CCcEEEEeCCCccccccccccccCCcchhhHHHHHHHHHHHHHHHHhhhcCCcEEEEeecCCCCCchhHHHHHHhhccce
Q 041690 105 IPTAVVVDDFGDLFDDRTCQERYTNPRGRDLAMVRTLALCYNAITHANKKSPCKLLLSDTHLGNSTRLLYIYKRWISSIF 184 (233)
Q Consensus 105 ~p~iIvIDei~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~vlvi~~~~~~~~~~~~~~~~~~~~~~~ 184 (233)
.|+++++||+++-++. .... .+++.+..+++.|.+++++++... . ..+.+.++
T Consensus 303 ~p~~lllDEpt~~LD~-------------~~~~-----~~~~~l~~l~~~g~tvi~itH~~~--------~-~~~~d~~~ 355 (365)
T 3qf7_A 303 RLDAFFIDEGFSSLDT-------------ENKE-----KIASVLKELERLNKVIVFITHDRE--------F-SEAFDRKL 355 (365)
T ss_dssp TCCEEEEESCCTTSCH-------------HHHH-----HHHHHHHGGGGSSSEEEEEESCHH--------H-HTTCSCEE
T ss_pred CCCEEEEeCCCccCCH-------------HHHH-----HHHHHHHHHHhCCCEEEEEecchH--------H-HHhCCEEE
Confidence 4999999999999983 1111 266777777777888888866421 2 34567777
Q ss_pred EEEe
Q 041690 185 TVKG 188 (233)
Q Consensus 185 ~i~~ 188 (233)
.+..
T Consensus 356 ~l~~ 359 (365)
T 3qf7_A 356 RITG 359 (365)
T ss_dssp EEET
T ss_pred EEEC
Confidence 7763
No 472
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=96.44 E-value=0.0034 Score=53.89 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=17.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLF 37 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~ 37 (233)
..+..+++.+|+|+|||....
T Consensus 50 ~~~~~~lv~a~TGsGKT~~~~ 70 (417)
T 2i4i_A 50 KEKRDLMACAQTGSGKTAAFL 70 (417)
T ss_dssp HTTCCEEEECCTTSCHHHHHH
T ss_pred ccCCCEEEEcCCCCHHHHHHH
Confidence 367889999999999997443
No 473
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.44 E-value=0.004 Score=52.77 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
...++++.|-.|+||||++..+|..++ +.|.+|+.|+..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la-~~g~~vllid~D 53 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLA-KVRRSVLLLSTD 53 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHT-TSSSCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHH-hCCCcEEEEECC
Confidence 356788889999999999999999999 779999999976
No 474
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=96.44 E-value=0.011 Score=56.80 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQS----NANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~----g~~v~yi~~e 57 (233)
.|..+++.+|.|+|||..+...+....... +.+++++...
T Consensus 262 ~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt 305 (936)
T 4a2w_A 262 NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 305 (936)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSS
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCC
Confidence 577899999999999988776665554222 6778888754
No 475
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.44 E-value=0.0013 Score=50.09 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 041690 21 ITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~ 41 (233)
.++|.|+||+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999997754
No 476
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.41 E-value=0.0016 Score=54.35 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
.++..+.|.||||||||||++.++...
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccc
Confidence 478899999999999999999776433
No 477
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.40 E-value=0.0063 Score=59.39 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhh---hcCCCeEEEEec
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCA---SQSNANVVFMCN 56 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~---~~~g~~v~yi~~ 56 (233)
..+.+.|+|++|+||||||.+++.... ......++|++-
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 456789999999999999998876532 123456778873
No 478
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.40 E-value=0.0019 Score=49.09 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~ 41 (233)
+.-.++|.|++|+|||+|+.++..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 556789999999999999997653
No 479
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=96.37 E-value=0.0051 Score=51.87 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
...++.+.|.+|+||||++..+|..++ +.|.+|+.++..
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA-~~G~rVllvD~D 56 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMS-KVRSSVLLISTD 56 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHH-TSSSCEEEEECC
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCeEEEEECC
Confidence 346677889999999999999999999 779999999876
No 480
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.35 E-value=0.00086 Score=54.59 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.++..+.|.|++||||||++..++..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 46778999999999999999966543
No 481
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.32 E-value=0.0011 Score=55.45 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~ 41 (233)
.+|..+.|.||||+|||||+..++.
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHhcc
Confidence 5799999999999999999997654
No 482
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.32 E-value=0.0022 Score=53.92 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+| .++|+||+|+|||+|+..+...
T Consensus 23 ~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 23 SDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred CCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 455 9999999999999999988754
No 483
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.32 E-value=0.0031 Score=55.08 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhh
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCA 44 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~ 44 (233)
.++..+.|.||+|+|||||+..++....
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4678999999999999999998876543
No 484
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.32 E-value=0.0033 Score=55.82 Aligned_cols=38 Identities=26% Similarity=0.222 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEE
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFM 54 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi 54 (233)
.+|..++|+|++|+|||+|+.+++.+.+...+.-++|+
T Consensus 163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~ 200 (498)
T 1fx0_B 163 RRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200 (498)
T ss_dssp CTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred ccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence 58999999999999999999999998764444556665
No 485
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.32 E-value=0.0024 Score=46.99 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 041690 21 ITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~ 41 (233)
.++|.|++|+|||||+.+++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998875
No 486
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.32 E-value=0.0045 Score=48.28 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=28.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 21 ITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 21 ~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
.+.|.|+-||||||.+..++..+. ..|.++++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~-~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE-KRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCcEEEEE
Confidence 367889999999999999988777 6688887764
No 487
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.31 E-value=0.0022 Score=47.46 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
-.++|.|++|+|||||+.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999988753
No 488
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.31 E-value=0.003 Score=47.34 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~ 41 (233)
.+...++|.|++|+|||+|+.++..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999998764
No 489
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.30 E-value=0.023 Score=52.40 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=28.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEecC
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMCNR 57 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~~e 57 (233)
..+..+++.+|.|||||+.....+. +.+.+++++...
T Consensus 230 ~~~~~vlv~ApTGSGKT~a~~l~ll----~~g~~vLVl~PT 266 (666)
T 3o8b_A 230 QSFQVAHLHAPTGSGKSTKVPAAYA----AQGYKVLVLNPS 266 (666)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHH----HTTCCEEEEESC
T ss_pred HcCCeEEEEeCCchhHHHHHHHHHH----HCCCeEEEEcch
Confidence 5778899999999999976654333 346688888754
No 490
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.30 E-value=0.0025 Score=51.08 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHh
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNC 43 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~ 43 (233)
-...|.|||||||||++..++...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999887644
No 491
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.29 E-value=0.0046 Score=48.59 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=27.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEEe
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFMC 55 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi~ 55 (233)
..+.|.|+.||||||++..++..+. + |.++++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~-~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-K-DYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-T-TSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-C-CCCEEEee
Confidence 4688999999999999998887775 3 66776653
No 492
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.28 E-value=0.0032 Score=49.14 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+...++|.|++|+|||+|+.+++..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999988753
No 493
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0033 Score=47.94 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
+...++|.|++|+|||||+.+++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999987653
No 494
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.27 E-value=0.0026 Score=46.89 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
-.++|.|++|+|||||+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999987653
No 495
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.26 E-value=0.0014 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=19.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q 041690 18 VDPITLLSGPPCCGKTSLLFQFA 40 (233)
Q Consensus 18 ~g~~~ll~GppGsGKTtLa~~~a 40 (233)
+.-.++|.|++|+|||||+.++.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45679999999999999998553
No 496
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.26 E-value=0.0025 Score=47.64 Aligned_cols=22 Identities=45% Similarity=0.425 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 041690 20 PITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~ 41 (233)
-.++|.|+||+|||+|+.++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3588999999999999997753
No 497
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.24 E-value=0.0017 Score=54.49 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 041690 20 PITLLSGPPCCGKTSLLFQFAYN 42 (233)
Q Consensus 20 ~~~ll~GppGsGKTtLa~~~a~~ 42 (233)
.+++|.|++|||||||++.++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 57899999999999999988754
No 498
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.24 E-value=0.0028 Score=48.15 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 041690 19 DPITLLSGPPCCGKTSLLFQFAY 41 (233)
Q Consensus 19 g~~~ll~GppGsGKTtLa~~~a~ 41 (233)
...+.|.|++|+|||||+.+++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35688999999999999998764
No 499
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=96.24 E-value=0.0043 Score=48.77 Aligned_cols=35 Identities=11% Similarity=0.005 Sum_probs=29.1
Q ss_pred EEEEEc-CCCCcHHHHHHHHHHHhhhcCCCeEEEEec
Q 041690 21 ITLLSG-PPCCGKTSLLFQFAYNCASQSNANVVFMCN 56 (233)
Q Consensus 21 ~~ll~G-ppGsGKTtLa~~~a~~~~~~~g~~v~yi~~ 56 (233)
.+.|+| -+|+||||++..+|..++ +.|.+|++++.
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la-~~G~rVll~dp 38 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAK-AAGYRTAGYKP 38 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHH-HTTCCEEEECS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcc
Confidence 455665 589999999999999998 77999999863
No 500
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=96.23 E-value=0.057 Score=47.94 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=27.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhhhcCCCeEEEE
Q 041690 17 HVDPITLLSGPPCCGKTSLLFQFAYNCASQSNANVVFM 54 (233)
Q Consensus 17 ~~g~~~ll~GppGsGKTtLa~~~a~~~~~~~g~~v~yi 54 (233)
.+|...+|.|++|+|||+|+.....+.+ ..+..++|+
T Consensus 160 grGQR~~Ifg~~g~GKT~Lal~~I~~~~-~~dv~~V~~ 196 (502)
T 2qe7_A 160 GRGQRELIIGDRQTGKTTIAIDTIINQK-GQDVICIYV 196 (502)
T ss_dssp BTTCBCEEEECSSSCHHHHHHHHHHGGG-SCSEEEEEE
T ss_pred ccCCEEEEECCCCCCchHHHHHHHHHhh-cCCcEEEEE
Confidence 4999999999999999999765444455 334445665
Done!