BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041692
(73 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FIJ2|NDUA2_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Arabidopsis thaliana GN=At5g47890 PE=3 SV=1
Length = 97
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 62/64 (96%)
Query: 10 MAWRGQLSRSMKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECSGIEPQL 69
MAWRG +S+SMKELRILLCQ+SP+S+ TR+FVE+NYK+LK+LNPKLPILIRECSG++PQ+
Sbjct: 1 MAWRGSISKSMKELRILLCQSSPASAPTRTFVEKNYKDLKSLNPKLPILIRECSGVQPQM 60
Query: 70 WARY 73
WARY
Sbjct: 61 WARY 64
>sp|Q02370|NDUA2_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Bos taurus GN=NDUFA2 PE=1 SV=2
Length = 99
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 13 RGQLSRSMKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECSGIEPQLWAR 72
RG+L ++E+RI LCQ SP S R F+E+ Y ELK NP LPILIRECS ++P+LWAR
Sbjct: 11 RGKLG--LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWAR 68
Query: 73 Y 73
Y
Sbjct: 69 Y 69
>sp|O43678|NDUA2_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Homo sapiens GN=NDUFA2 PE=1 SV=3
Length = 99
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 41/55 (74%)
Query: 19 SMKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECSGIEPQLWARY 73
++E+RI LCQ SP S R F+E+ Y ELK NP LPILIRECS ++P+LWARY
Sbjct: 15 GLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARY 69
>sp|Q4R5E2|NDUA2_MACFA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Macaca fascicularis GN=NDUFA2 PE=3 SV=3
Length = 99
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 41/55 (74%)
Query: 19 SMKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECSGIEPQLWARY 73
++E+RI LCQ SP S R F+E+ Y ELK NP LPILIRECS ++P+LWARY
Sbjct: 15 GLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARY 69
>sp|P0CB80|NDUA2_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Pongo pygmaeus GN=NDUFA2 PE=3 SV=1
Length = 103
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 41/55 (74%)
Query: 19 SMKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECSGIEPQLWARY 73
++E+RI LCQ SP S R F+E+ Y ELK NP LPILIRECS ++P+LWARY
Sbjct: 15 GLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARY 69
>sp|P0CB79|NDUA2_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Pongo abelii GN=NDUFA2 PE=3 SV=1
Length = 103
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 41/55 (74%)
Query: 19 SMKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECSGIEPQLWARY 73
++E+RI LCQ SP S R F+E+ Y ELK NP LPILIRECS ++P+LWARY
Sbjct: 15 GLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARY 69
>sp|Q0MQ92|NDUA2_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Gorilla gorilla gorilla GN=NDUFA2 PE=3 SV=3
Length = 99
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 40/55 (72%)
Query: 19 SMKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECSGIEPQLWARY 73
++E+RI LCQ SP S R F+E+ Y ELK N LPILIRECS ++P+LWARY
Sbjct: 15 GLREIRIHLCQRSPGSRGVRDFIEKRYVELKKANSDLPILIRECSDVQPKLWARY 69
>sp|Q9CQ75|NDUA2_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Mus musculus GN=Ndufa2 PE=1 SV=3
Length = 99
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 19 SMKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECSGIEPQLWARY 73
++E+R+ LCQ SP S R F+ + Y ELK +P LPILIRECS ++P+LWARY
Sbjct: 15 GLREIRVHLCQRSPGSQGVRDFIVQRYVELKKAHPNLPILIRECSEVQPKLWARY 69
>sp|Q07842|NDUA2_NEUCR NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=nuo-10.5 PE=4 SV=1
Length = 94
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 10 MAWRGQLSRSMKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECSGIEPQL 69
M+ R ++ +KE+R L CQT S++TRSF+ RNY +K NP PILIR+ SG P++
Sbjct: 1 MSGRFAFNKGLKEVRFLFCQTGEHSAATRSFLLRNYPAMKKDNPATPILIRDASGTLPKV 60
Query: 70 WARY 73
+AR+
Sbjct: 61 YARF 64
>sp|Q99N89|RM43_MOUSE 39S ribosomal protein L43, mitochondrial OS=Mus musculus
GN=Mrpl43 PE=2 SV=1
Length = 183
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 14 GQLSRSMKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILI--RECSGIEPQLWA 71
G+ + ++ L + L + +PSS R FVER + NP + + + R C+ P++ A
Sbjct: 20 GRYVQQLQRLSLSLSRDAPSSRGAREFVEREVTDFARRNPGVVVYVNPRPCA--MPRIVA 77
Query: 72 RY 73
Y
Sbjct: 78 EY 79
>sp|Q95KE5|RM43_BOVIN 39S ribosomal protein L43, mitochondrial OS=Bos taurus GN=MRPL43
PE=2 SV=2
Length = 159
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 14 GQLSRSMKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECSGIEPQLWARY 73
G+ + ++ L L + +PSS R FVER + NP + I + P++ A Y
Sbjct: 20 GRYVQQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPGVVIYVNPRPCCVPRVVAEY 79
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.128 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,883,997
Number of Sequences: 539616
Number of extensions: 733139
Number of successful extensions: 2375
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2363
Number of HSP's gapped (non-prelim): 13
length of query: 73
length of database: 191,569,459
effective HSP length: 45
effective length of query: 28
effective length of database: 167,286,739
effective search space: 4684028692
effective search space used: 4684028692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)