Query 041692
Match_columns 73
No_of_seqs 104 out of 313
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 16:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s3a_A NADH-ubiquinone oxidore 99.9 2E-27 6.8E-32 150.1 7.2 65 9-73 6-72 (102)
2 4gqo_A LMO0859 protein; virule 79.2 3.3 0.00011 28.7 4.8 38 22-63 31-68 (433)
3 4aq4_A SN-glycerol-3-phosphate 66.7 7.5 0.00026 26.5 4.1 39 20-62 5-43 (419)
4 1elj_A Maltodextrin-binding pr 66.4 9.7 0.00033 26.0 4.6 27 36-62 17-43 (381)
5 4g68_A ABC transporter; transp 65.4 10 0.00035 26.8 4.7 26 37-62 76-101 (456)
6 3thi_A Protein (thiaminase I); 64.4 9.8 0.00034 25.7 4.3 37 22-61 2-38 (371)
7 2w7y_A FCSSBP, probable sugar 62.2 18 0.00062 25.1 5.5 42 22-63 39-81 (430)
8 2qsx_A Putative transcriptiona 61.7 10 0.00034 23.6 3.7 28 37-64 30-57 (218)
9 3jv9_A OXYR, transcriptional r 61.1 12 0.00043 22.3 4.0 27 37-63 15-41 (219)
10 2y7p_A LYSR-type regulatory pr 56.0 15 0.00052 22.7 3.8 27 37-63 19-45 (218)
11 1twy_A ABC transporter, peripl 53.4 18 0.0006 22.9 3.9 24 39-62 40-63 (290)
12 4ab5_A Transcriptional regulat 52.7 15 0.0005 22.1 3.3 37 22-63 9-45 (222)
13 1i6a_A OXYR, hydrogen peroxide 51.3 18 0.00063 22.0 3.6 36 22-62 6-41 (219)
14 2ql3_A Probable transcriptiona 50.4 12 0.00041 22.5 2.6 25 39-63 18-42 (209)
15 3onm_A Transcriptional regulat 50.2 18 0.00063 22.4 3.5 26 38-63 39-64 (238)
16 3hhf_B Transcriptional regulat 49.0 14 0.00048 22.0 2.8 25 37-61 18-42 (213)
17 2jr1_A Virulence regulator; H- 48.9 14 0.00047 22.0 2.6 23 35-57 51-74 (79)
18 3ho7_A OXYR; beta-alpha-barrel 48.7 21 0.00073 21.6 3.6 37 21-62 11-47 (232)
19 3fzv_A Probable transcriptiona 48.5 20 0.00069 23.0 3.6 38 21-63 95-132 (306)
20 2fyi_A HTH-type transcriptiona 48.1 17 0.00059 22.4 3.1 26 37-62 25-50 (228)
21 3quf_A Extracellular solute-bi 47.6 18 0.00062 24.8 3.4 24 39-62 41-64 (414)
22 1eu8_A Trehalose/maltose bindi 47.6 31 0.0011 23.6 4.7 28 36-63 15-42 (409)
23 3i3v_A Probable secreted solut 47.6 12 0.0004 25.7 2.5 39 22-62 9-47 (405)
24 3kos_A HTH-type transcriptiona 46.8 19 0.00064 21.8 3.1 27 37-63 23-49 (219)
25 3oxn_A Putative transcriptiona 46.2 24 0.00083 21.7 3.6 38 21-63 19-56 (241)
26 2hxr_A HTH-type transcriptiona 44.9 19 0.00065 22.1 3.0 25 38-62 42-66 (238)
27 2uvj_A TOGB, ABC type periplas 43.5 35 0.0012 23.4 4.4 38 22-63 7-44 (408)
28 1ego_A Glutaredoxin; electron 42.0 35 0.0012 17.9 3.5 34 22-59 2-35 (85)
29 2b3f_A Glucose-binding protein 40.9 33 0.0011 23.5 4.0 28 36-63 12-39 (400)
30 2esn_A Probable transcriptiona 40.4 34 0.0012 22.0 3.8 39 21-64 101-139 (310)
31 3fxq_A LYSR type regulator of 40.4 38 0.0013 21.9 4.0 38 21-63 92-129 (305)
32 2heu_A Sugar ABC transporter, 40.3 31 0.0011 23.7 3.7 25 38-62 31-55 (401)
33 1hym_A CMTI-V, hydrolyzed cucu 38.7 26 0.0009 18.5 2.5 19 44-62 21-39 (45)
34 2jwk_A Protein TOLR; periplasm 38.6 33 0.0011 18.3 3.0 25 40-64 31-55 (74)
35 1ixc_A CBNR, LYSR-type regulat 37.3 29 0.00098 22.1 3.0 38 20-62 90-127 (294)
36 3cfx_A UPF0100 protein MA_0280 36.4 36 0.0012 22.6 3.5 28 35-62 13-40 (296)
37 1uth_A LYSR-type regulatory pr 36.3 44 0.0015 21.9 3.8 27 37-63 116-142 (315)
38 4exl_A PBP 1, phosphate-bindin 34.5 34 0.0012 22.9 3.1 26 37-62 14-39 (265)
39 3cij_A UPF0100 protein AF_0094 33.8 34 0.0012 22.7 3.0 27 35-61 13-39 (295)
40 3mz1_A Putative transcriptiona 33.8 36 0.0012 21.4 3.0 26 37-62 99-124 (300)
41 2h9b_A HTH-type transcriptiona 33.6 34 0.0012 22.3 2.9 36 22-62 91-126 (312)
42 3oo8_A ABC transporter binding 33.0 65 0.0022 21.9 4.4 39 21-63 28-66 (415)
43 2z8f_A Galacto-N-biose/lacto-N 32.5 52 0.0018 22.6 3.9 25 39-63 31-55 (412)
44 3k01_A Acarbose/maltose bindin 31.7 59 0.002 22.2 4.0 37 22-62 29-65 (412)
45 2d7c_C RAB11 family-interactin 29.9 23 0.00078 18.6 1.3 21 35-55 18-38 (42)
46 2h98_A HTH-type transcriptiona 29.9 45 0.0015 22.0 3.1 36 22-62 91-126 (313)
47 3szp_A Transcriptional regulat 29.8 41 0.0014 21.1 2.8 37 21-62 91-127 (291)
48 3hhg_A Transcriptional regulat 28.6 44 0.0015 21.3 2.8 35 21-60 93-127 (306)
49 1atg_A MODA, periplasmic molyb 28.3 28 0.00097 21.0 1.7 24 37-61 10-33 (231)
50 3c9h_A ABC transporter, substr 27.9 66 0.0022 21.7 3.7 24 39-62 45-68 (355)
51 3uor_A ABC transporter sugar b 27.6 44 0.0015 23.5 2.8 26 37-62 40-65 (458)
52 1xg8_A Hypothetical protein SA 27.3 1.1E+02 0.0036 19.3 4.3 37 28-67 22-58 (111)
53 2npb_A Selenoprotein W; struct 26.9 44 0.0015 20.0 2.4 38 22-63 4-42 (96)
54 3r7w_B Gtpase2, GTP-binding pr 26.7 1.3E+02 0.0044 21.6 5.2 42 18-60 71-112 (331)
55 3cvg_A Putative metal binding 26.3 59 0.002 21.7 3.2 29 34-62 28-61 (294)
56 2jwp_A Malectin, MGC80075; sug 26.1 7.9 0.00027 24.8 -1.2 21 20-40 78-98 (174)
57 2dj1_A Protein disulfide-isome 25.9 33 0.0011 19.7 1.7 39 23-61 38-76 (140)
58 2hv8_D RAB11 family-interactin 25.9 28 0.00097 19.8 1.3 21 35-55 40-60 (64)
59 1vee_A Proline-rich protein fa 25.7 49 0.0017 19.7 2.5 21 22-42 75-95 (134)
60 4ecf_A ABC-type phosphate tran 25.5 39 0.0013 22.5 2.1 25 38-62 15-39 (264)
61 1mek_A Protein disulfide isome 25.5 38 0.0013 18.5 1.8 39 23-61 28-66 (120)
62 2iru_A Putative DNA ligase-lik 25.3 37 0.0013 24.6 2.1 41 33-73 191-231 (303)
63 4ay1_A Chitinase-3-like protei 25.0 46 0.0016 23.3 2.5 20 43-62 58-77 (365)
64 3ibh_A GST-II, saccharomyces c 24.9 49 0.0017 20.6 2.4 38 22-59 18-76 (233)
65 3cfz_A UPF0100 protein MJ1186; 24.5 49 0.0017 21.9 2.5 27 35-61 13-39 (292)
66 3idv_A Protein disulfide-isome 24.4 81 0.0028 19.7 3.4 40 23-62 151-190 (241)
67 1pc3_A Phosphate-binding prote 24.1 26 0.00089 24.6 1.1 29 32-61 33-61 (350)
68 3ge3_E Toluene-4-monooxygenase 23.9 62 0.0021 19.8 2.7 18 47-64 30-47 (103)
69 4euy_A Uncharacterized protein 23.8 93 0.0032 16.8 3.3 36 23-62 22-57 (105)
70 1wxl_A Single-strand recogniti 23.7 39 0.0013 18.3 1.6 17 40-56 14-30 (73)
71 3v26_X ORF3, ORF95, probable s 23.7 1.2E+02 0.004 17.8 4.1 32 23-55 3-34 (101)
72 3nm9_A HMG-D, high mobility gr 23.0 41 0.0014 18.3 1.6 19 39-57 13-31 (73)
73 1al3_A Cys regulon transcripti 22.9 43 0.0015 22.0 1.9 25 38-62 105-129 (324)
74 2vim_A Thioredoxin, TRX; thior 22.8 93 0.0032 16.4 3.1 36 23-62 23-58 (104)
75 3m9j_A Thioredoxin; oxidoreduc 22.7 91 0.0031 16.5 3.1 37 22-62 23-59 (105)
76 1ghh_A DINI, DNA-damage-induci 22.4 1.3E+02 0.0043 17.6 5.8 42 22-63 2-46 (81)
77 4gd5_A Phosphate ABC transport 22.2 75 0.0025 20.9 3.0 25 37-61 47-71 (279)
78 2ljk_A Protein C17ORF37; MIEN1 22.1 66 0.0022 20.1 2.6 36 22-64 26-64 (117)
79 3sim_A Protein, family 18 chit 21.9 47 0.0016 22.6 2.0 20 43-62 64-83 (275)
80 1ckt_A High mobility group 1 p 21.8 57 0.002 17.3 2.0 17 40-56 12-28 (71)
81 2ojl_A Hypothetical protein; B 21.3 1.5E+02 0.0052 18.2 4.4 43 19-63 7-49 (108)
82 2d7l_A WD repeat and HMG-box D 20.9 64 0.0022 18.3 2.2 17 40-56 16-32 (81)
83 2fao_A Probable ATP-dependent 20.5 53 0.0018 23.8 2.1 41 33-73 189-229 (309)
84 2cvd_A Glutathione-requiring p 20.3 92 0.0031 18.9 3.0 38 22-59 2-54 (198)
No 1
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=99.94 E-value=2e-27 Score=150.07 Aligned_cols=65 Identities=52% Similarity=0.972 Sum_probs=53.5
Q ss_pred HhHhhhccccc--cceEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEcCCCCCEEEEeC
Q 041692 9 EMAWRGQLSRS--MKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECSGIEPQLWARY 73 (73)
Q Consensus 9 ~Ms~rg~~~~q--Lk~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~~g~~P~l~a~Y 73 (73)
.|||+.+|++. ||+|+|+||+++|||+|+|+||.++|++||+.||+++|+|++++|.||.|+|+|
T Consensus 6 ~~~~~~~l~~~~qlk~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~~~~~~P~i~a~Y 72 (102)
T 1s3a_A 6 AAAASRGVGAKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARY 72 (102)
T ss_dssp ------------CEEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCCSSSCEEEEEE
T ss_pred hhhhhhcCCCCCceeEEEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEEEECCCCCCEEEEEE
Confidence 47799999998 999999999999999999999999999999999999999999999999999998
No 2
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=79.16 E-value=3.3 Score=28.72 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=28.9
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 22 ELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
+|+|.. ..+..-.++++....+|.++||+|.|.+..-+
T Consensus 31 ~it~W~----~~~~~~~~~~~~~i~~F~~~~p~i~V~~~~~~ 68 (433)
T 4gqo_A 31 KVTFWA----APNPTQVKYWDEMAKAYEKENPDVTIEVSQMK 68 (433)
T ss_dssp EEEEEE----CSCHHHHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred EEEEEe----CCCchHHHHHHHHHHHHHHHCcCeEEEEEEcC
Confidence 566643 23445568999999999999999999887654
No 3
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=66.67 E-value=7.5 Score=26.46 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=27.3
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 20 MKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 20 Lk~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
.-.|+|.+- + +-.-.+.+++...+|.++||+|.|.+...
T Consensus 5 ~TTItfW~~-~---~g~~~~~~~~~i~~F~~~~p~i~V~~~~~ 43 (419)
T 4aq4_A 5 VTTIPFWHS-M---EGELGKEVDSLAQRFNAENPDYKIVPTYK 43 (419)
T ss_dssp CEEEEEEEC-C---CTHHHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred CEEEEEcCC-C---CchHHHHHHHHHHHHHHHCcCeEEEEEeC
Confidence 345777542 2 22335788888999999999999877643
No 4
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=66.36 E-value=9.7 Score=26.03 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=22.8
Q ss_pred HHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 36 STRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 36 G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
+-.++++..+.+|.++||+|.|.+...
T Consensus 17 ~~~~~~~~~i~~F~~~~p~i~V~~~~~ 43 (381)
T 1elj_A 17 NELEVFQSLAEEYMALCPEVEIVFEQK 43 (381)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred chHHHHHHHHHHHHHHCCCcEEEEEEC
Confidence 456788899999999999999988754
No 5
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=65.40 E-value=10 Score=26.77 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=21.9
Q ss_pred HHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 37 TRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 37 ~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
-.+++++.+.+|.++||+|.|.+...
T Consensus 76 ~~~~~~~~i~~F~~~~p~I~V~~~~~ 101 (456)
T 4g68_A 76 AKTKVKEIIDQWNKENPNVQIVESVT 101 (456)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCcCeEEEEEEC
Confidence 45778888999999999999987654
No 6
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=64.44 E-value=9.8 Score=25.70 Aligned_cols=37 Identities=8% Similarity=0.199 Sum_probs=27.1
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEE
Q 041692 22 ELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRE 61 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~ 61 (73)
.|+|.+ |+. +....++++..+.+|.++||+|.|.+..
T Consensus 2 tl~v~~--w~~-~~~~~~~~~~~~~~F~~~~p~i~V~~~~ 38 (371)
T 3thi_A 2 TLKVAI--YPY-VPDPARFQAAVLDQWQRQEPGVKLEFTD 38 (371)
T ss_dssp EEEEEC--CSC-SSCHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEEEEE--eCC-CCCHHHHHHHHHHHHHHhCCCeeEEEEe
Confidence 455554 332 2234788999999999999999998764
No 7
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=62.25 E-value=18 Score=25.09 Aligned_cols=42 Identities=5% Similarity=0.035 Sum_probs=27.5
Q ss_pred eEEEEeCCCCCCCH-HHHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 22 ELRILLCQTSPSSS-STRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 22 ~l~~~yC~~~~SS~-G~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
.|+|....+++.+. +..+.++..+.+|.++||++.|.+...+
T Consensus 39 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~ 81 (430)
T 2w7y_A 39 VLEFYHGYHHSEDEWPVAKTMRDLYDKFAEEHKDSGVEFKPTP 81 (430)
T ss_dssp EEEEEESCCCCTTTCHHHHHHHHHHHHHHHHC--CCSEEEEEE
T ss_pred eEEEEEecCCCccchhHHHHHHHHHHHHHHHCCCceEEEEeCC
Confidence 47777654443222 3457888899999999999888776543
No 8
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=61.68 E-value=10 Score=23.60 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=24.0
Q ss_pred HHHHHHHcHHHHHHhCCCCeEEEEEcCC
Q 041692 37 TRSFVERNYKELKTLNPKLPILIRECSG 64 (73)
Q Consensus 37 ~R~Fl~~~l~~fk~~NP~v~i~v~~~~g 64 (73)
...||-..+.+|.+++|++.|.+.....
T Consensus 30 ~~~~L~~~l~~f~~~~P~i~l~l~~~~~ 57 (218)
T 2qsx_A 30 ASLWLVPNINDFHQRHPNIRVKILTGDG 57 (218)
T ss_dssp HHHTHHHHHHHHHHHCTTCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 3567889999999999999999987654
No 9
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=61.15 E-value=12 Score=22.29 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=22.7
Q ss_pred HHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 37 TRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 37 ~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
...++...+.+|.+.+|++.|.+.+..
T Consensus 15 ~~~~l~~~l~~~~~~~P~i~i~i~~~~ 41 (219)
T 3jv9_A 15 APYLLPKLIVSLRRTAPKMPLMLEENY 41 (219)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 346888999999999999999997653
No 10
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=56.00 E-value=15 Score=22.73 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=23.2
Q ss_pred HHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 37 TRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 37 ~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
...++-.-+..|++++|++.|.+.+..
T Consensus 19 ~~~~lp~~l~~f~~~~P~v~l~l~~~~ 45 (218)
T 2y7p_A 19 EMYFMPPLMEALAQRAPHIQISTLRPN 45 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 456788999999999999999998754
No 11
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=53.39 E-value=18 Score=22.95 Aligned_cols=24 Identities=4% Similarity=0.152 Sum_probs=21.4
Q ss_pred HHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 39 SFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 39 ~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
.++...+.+|.+++|++.|.+...
T Consensus 40 ~~l~~~l~~f~~~~P~i~v~i~~~ 63 (290)
T 1twy_A 40 RIMDVLAEKYNQQHPETYVAVQGV 63 (290)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHHHHHhhCCCceEEEEec
Confidence 688899999999999999998764
No 12
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=52.67 E-value=15 Score=22.07 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=27.5
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 22 ELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
+|+|-..+.- ...++...+.+|.+.+|++.|.+....
T Consensus 9 ~l~Ig~~~~~-----~~~~l~~~l~~f~~~~P~i~i~i~~~~ 45 (222)
T 4ab5_A 9 ELRIAVECHT-----CFDWLMPAMGEFRPMWPQVELDIVSGF 45 (222)
T ss_dssp EEEEECCCTT-----THHHHHHHHHHHHHHSTTEEEEEECCC
T ss_pred eEEEEEehHH-----HHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4566544432 236788899999999999999998754
No 13
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=51.31 E-value=18 Score=22.00 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=27.0
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 22 ELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
.|++-..+.- ...++...+..|.+.+|++.|.+.+.
T Consensus 6 ~lrIg~~~~~-----~~~~l~~~l~~f~~~~P~v~l~l~~~ 41 (219)
T 1i6a_A 6 PLHIGLIPTV-----GPYLLPHIIPMLHQTFPKLEMYLHEA 41 (219)
T ss_dssp EEEEEECTTT-----HHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred EEEEEeccch-----hhhhhhHHHHHHHHHCCCeEEEEEEC
Confidence 4566554432 34678899999999999999998764
No 14
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=50.38 E-value=12 Score=22.48 Aligned_cols=25 Identities=12% Similarity=0.204 Sum_probs=21.3
Q ss_pred HHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 39 SFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 39 ~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
.++...+.+|++++|++.|.+....
T Consensus 18 ~~l~~~l~~f~~~~P~i~i~l~~~~ 42 (209)
T 2ql3_A 18 TILPSMLYAFTAEYPRASVEFREDT 42 (209)
T ss_dssp TTHHHHHHHHHHHCTTEEEEEEECC
T ss_pred hhHHHHHHHHHHHCCCceEEEEECc
Confidence 5678889999999999999987653
No 15
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=50.22 E-value=18 Score=22.39 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.4
Q ss_pred HHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 38 RSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 38 R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
..++...+.+|.+++|++.|.+....
T Consensus 39 ~~~l~~~l~~f~~~~P~i~l~i~~~~ 64 (238)
T 3onm_A 39 DTLLPFLLNRVATLYPRLAIDVRVKR 64 (238)
T ss_dssp TTHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEECC
Confidence 46788999999999999999998653
No 16
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=48.99 E-value=14 Score=21.99 Aligned_cols=25 Identities=4% Similarity=0.096 Sum_probs=21.5
Q ss_pred HHHHHHHcHHHHHHhCCCCeEEEEE
Q 041692 37 TRSFVERNYKELKTLNPKLPILIRE 61 (73)
Q Consensus 37 ~R~Fl~~~l~~fk~~NP~v~i~v~~ 61 (73)
...|+...+.+|++++|++.|.+..
T Consensus 18 ~~~~l~~~l~~f~~~~P~v~l~i~~ 42 (213)
T 3hhf_B 18 VLHLLAPLAAKFNERYPHIRLSLVS 42 (213)
T ss_dssp HHHTHHHHHHHHHHHCTTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 3567789999999999999999873
No 17
>2jr1_A Virulence regulator; H-NS, DNA biding protein, DNA binding PR; NMR {Xylella fastidiosa}
Probab=48.86 E-value=14 Score=22.04 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=19.4
Q ss_pred HHHHHHHH-HcHHHHHHhCCCCeE
Q 041692 35 SSTRSFVE-RNYKELKTLNPKLPI 57 (73)
Q Consensus 35 ~G~R~Fl~-~~l~~fk~~NP~v~i 57 (73)
+=+.+++. -.|.++|+.||+..|
T Consensus 51 ~Wi~~~l~~~~~k~wk~~~p~~~~ 74 (79)
T 2jr1_A 51 KPFEAWIGTAAYTAWKAKHPDEKF 74 (79)
T ss_dssp HHHHHHHHHTTHHHHHHHSSSCSC
T ss_pred HHHHHHHHHhHHHHHHhhCCCCcC
Confidence 45788895 599999999999876
No 18
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=48.66 E-value=21 Score=21.57 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=27.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 21 KELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 21 k~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
..|+|-..+.- ...++...+.+|.+.+|++.|.+.+.
T Consensus 11 g~l~Ig~~~~~-----~~~~l~~~l~~~~~~~P~v~i~~~~~ 47 (232)
T 3ho7_A 11 GRLNIAVLPTI-----APYLLPRVFPIWKKELAGLEIHVSEM 47 (232)
T ss_dssp EEEEEEECTTT-----HHHHHHHHHHHHHHHSTTEEEEEEEC
T ss_pred eeEEEEecccc-----chhhhHHHHHHHHHHCCCcEEEEEeC
Confidence 35666555432 34588899999999999999999764
No 19
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=48.53 E-value=20 Score=22.99 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=28.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 21 KELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 21 k~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
..|++-..++ -...++...+.+|.+.+|++.|.+....
T Consensus 95 g~l~i~~~~~-----~~~~~l~~~l~~f~~~~P~i~i~l~~~~ 132 (306)
T 3fzv_A 95 GQIDIGCFET-----VAPLYLPGLIAGFRQAYPGVEIRIRDGE 132 (306)
T ss_dssp EEEEEEEEGG-----GHHHHHHHHHHHHHHHCTTEEEEEEEEC
T ss_pred ceEEEEechh-----hhHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3566665432 2457888999999999999999987643
No 20
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=48.07 E-value=17 Score=22.38 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.5
Q ss_pred HHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 37 TRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 37 ~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
...++-..+.+|.+.+|++.|.+.+.
T Consensus 25 ~~~~l~~~l~~f~~~~P~v~l~l~~~ 50 (228)
T 2fyi_A 25 ARYSLPEVIKAFRELFPEVRLELIQG 50 (228)
T ss_dssp HHHTHHHHHHHHHHHCTTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 45777899999999999999998764
No 21
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=47.63 E-value=18 Score=24.83 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=20.9
Q ss_pred HHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 39 SFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 39 ~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
+.++..+.+|.++||+|.|.+...
T Consensus 41 ~~~~~~~~~f~~~~p~i~V~~~~~ 64 (414)
T 3quf_A 41 NQIGEVVKGFEKKNPDITLDVQYG 64 (414)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred hHHHHHHHHHHHHCcCeEEEEEeC
Confidence 578889999999999999998763
No 22
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=47.60 E-value=31 Score=23.60 Aligned_cols=28 Identities=7% Similarity=0.177 Sum_probs=23.2
Q ss_pred HHHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 36 STRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 36 G~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
.-.+.++..+.+|.++||++.|.+...+
T Consensus 15 ~~~~~~~~~~~~f~~~~p~i~V~~~~~~ 42 (409)
T 1eu8_A 15 NEIEYWKGVIAEFEKKYPGVTVELKRQA 42 (409)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHCCCeEEEEEECC
Confidence 3457788899999999999999987654
No 23
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=47.59 E-value=12 Score=25.70 Aligned_cols=39 Identities=10% Similarity=-0.013 Sum_probs=28.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 22 ELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
+|+|..-.+++ ..-.++++..+.+|.++||+|.|.+...
T Consensus 9 tl~~~~~~~~~--~~~~~~~~~~~~~f~~~~p~i~V~~~~~ 47 (405)
T 3i3v_A 9 TLVVHTQLGTT--APGSPTYLAAVDRFREENPGVKIKNLVN 47 (405)
T ss_dssp SEEEEESCSSS--STTHHHHHHHHHHHHHHSTTCCEEEEEC
T ss_pred EEEEEeecCCC--chhhHHHHHHHHHHHHHCCCcEEEEEEC
Confidence 46665444332 2335788889999999999999998754
No 24
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=46.77 E-value=19 Score=21.76 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=22.7
Q ss_pred HHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 37 TRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 37 ~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
...++-..+.+|.+.+|++.|.+....
T Consensus 23 ~~~~l~~~l~~f~~~~P~i~l~i~~~~ 49 (219)
T 3kos_A 23 AIGCLFPLLSDFKRSYPHIDLHISTHN 49 (219)
T ss_dssp HHHTHHHHHHHHHHHCTTEEEEEEEEC
T ss_pred HHHHHHhHHHHHHHHCCCceEEEEecc
Confidence 346778999999999999999997654
No 25
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=46.17 E-value=24 Score=21.71 Aligned_cols=38 Identities=5% Similarity=0.077 Sum_probs=28.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 21 KELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 21 k~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
..|+|-..+ .-...++...+..|.+++|++.|.+....
T Consensus 19 g~l~Ig~~~-----~~~~~~l~~~l~~f~~~~P~i~l~~~~~~ 56 (241)
T 3oxn_A 19 QTFTIATTD-----YAMQTILPFALPRIYQEAPNVSFNFLPLQ 56 (241)
T ss_dssp CEEEEEECS-----HHHHHTHHHHHHHHHHHCTTCEEEEEECC
T ss_pred ceEEEEech-----HHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 346665533 23457788999999999999999998754
No 26
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=44.93 E-value=19 Score=22.10 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=21.5
Q ss_pred HHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 38 RSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 38 R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
..|+-..+.+|.+.+|++.|.+.+.
T Consensus 42 ~~~l~~~l~~f~~~~P~v~l~~~~~ 66 (238)
T 2hxr_A 42 SYFIGPLMADFYARYPSITLQLQEM 66 (238)
T ss_dssp TTTHHHHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 4577889999999999999998764
No 27
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=43.51 E-value=35 Score=23.37 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=27.0
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 22 ELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
+|+|.+ |++ .+-.+.++..+.+|.++||++.|.+...+
T Consensus 7 ~l~i~~--W~~--~~~~~~~~~~~~~f~~~~p~i~V~~~~~~ 44 (408)
T 2uvj_A 7 NLRMSW--WGG--NGRHQVTLKALEEFHKQHPNINVKAEYTG 44 (408)
T ss_dssp EEEEEE--ECC--HHHHHHHHHHHHHHHHHCTTEEEEEEEEC
T ss_pred EEEEEE--ECC--cchHHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 355543 442 33457788889999999999998887654
No 28
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=42.01 E-value=35 Score=17.90 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=22.1
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEE
Q 041692 22 ELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILI 59 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v 59 (73)
+|.+.+-+|.+.++-++.+|+. ++..++++++..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~----l~~~~~~i~~~~ 35 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEK----LSNERDDFQYQY 35 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHH----HHHHHSSCEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHH----HHhcCCCceEEE
Confidence 4566666788888888888765 344445565543
No 29
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=40.88 E-value=33 Score=23.51 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=23.1
Q ss_pred HHHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 36 STRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 36 G~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
+-.++++..+.+|.++||++.|.+...+
T Consensus 12 ~~~~~~~~~~~~f~~~~p~i~V~~~~~~ 39 (400)
T 2b3f_A 12 DEGPALEALIRLYKQKYPGVEVINATVT 39 (400)
T ss_dssp GGCHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred cHHHHHHHHHHHHHHHCCCceEEEEecC
Confidence 3357888889999999999999987654
No 30
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=40.41 E-value=34 Score=22.03 Aligned_cols=39 Identities=5% Similarity=0.107 Sum_probs=28.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEcCC
Q 041692 21 KELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECSG 64 (73)
Q Consensus 21 k~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~~g 64 (73)
..|+|-..+ .-...++...+.+|.+.+|++.|.+.....
T Consensus 101 ~~l~Ig~~~-----~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~ 139 (310)
T 2esn_A 101 RTFVFAATD-----YTAFALLPPLMNRLQHSAPGVRLRLVNAER 139 (310)
T ss_dssp CEEEEECCH-----HHHHHHHHHHHHHHHHHSTTCEEEEECCSS
T ss_pred ceEEEEeCh-----HHHHHHHHHHHHHHHHHCCCeEEEEEeCCc
Confidence 457776532 123567788999999999999999987653
No 31
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=40.39 E-value=38 Score=21.90 Aligned_cols=38 Identities=5% Similarity=0.070 Sum_probs=28.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 21 KELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 21 k~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
..|+|-..+. -...++...+.+|.+++|++.|.+.+..
T Consensus 92 g~l~I~~~~~-----~~~~~l~~~l~~f~~~~P~i~i~l~~~~ 129 (305)
T 3fxq_A 92 GHITFAASPA-----IALAALPLALASFAREFPDVTVNVRDGM 129 (305)
T ss_dssp TEEEEEECHH-----HHHTHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred ceEEEEechH-----HHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 4567755322 2456788999999999999999998743
No 32
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=40.32 E-value=31 Score=23.66 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.4
Q ss_pred HHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 38 RSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 38 R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
.++++..+.+|.++||++.|.+..-
T Consensus 31 ~~~~~~~~~~f~~~~p~i~V~~~~~ 55 (401)
T 2heu_A 31 TKTLEEITRDFEKENPKIKVKVVNV 55 (401)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEECC
T ss_pred HHHHHHHHHHHHHHCcCeEEEEEeC
Confidence 4788889999999999999988654
No 33
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=38.73 E-value=26 Score=18.50 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=14.8
Q ss_pred cHHHHHHhCCCCeEEEEEc
Q 041692 44 NYKELKTLNPKLPILIREC 62 (73)
Q Consensus 44 ~l~~fk~~NP~v~i~v~~~ 62 (73)
.-..+.++||++.+.|.+.
T Consensus 21 A~~~I~~e~P~v~v~vl~~ 39 (45)
T 1hym_A 21 AKAIIERQNPNVKAVILEE 39 (45)
T ss_dssp HHHHHHHHCTTCEEEEEEC
T ss_pred HHHHHHHHCCCCeEEEecC
Confidence 3456889999999888754
No 34
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=38.59 E-value=33 Score=18.28 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=18.9
Q ss_pred HHHHcHHHHHHhCCCCeEEEEEcCC
Q 041692 40 FVERNYKELKTLNPKLPILIRECSG 64 (73)
Q Consensus 40 Fl~~~l~~fk~~NP~v~i~v~~~~g 64 (73)
=|...+..+.+.||+.+|.|+--..
T Consensus 31 ~L~~~l~~~~~~~~~~~V~I~aD~~ 55 (74)
T 2jwk_A 31 MVTQLSRQEFDKDNNTLFLVGGAKE 55 (74)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECTT
T ss_pred HHHHHHHHHHhhCCCceEEEEcCCC
Confidence 3455677788889999999986654
No 35
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=37.34 E-value=29 Score=22.10 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=29.0
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 20 MKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 20 Lk~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
-..|++-..+.-. ..++...+..|.+.+|++.|.+...
T Consensus 90 ~g~l~Ig~~~~~~-----~~~l~~~l~~f~~~~P~i~l~~~~~ 127 (294)
T 1ixc_A 90 VGELSVAYFGTPI-----YRSLPLLLRAFLTSTPTATVSLTHM 127 (294)
T ss_dssp CEEEEEEECSGGG-----GTHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred CceEEEEEccchh-----HHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 3467887665432 3677889999999999999998764
No 36
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=36.37 E-value=36 Score=22.62 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=23.2
Q ss_pred HHHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 35 SSTRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 35 ~G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
.++++.++.....|.++||++.|.+...
T Consensus 13 ~s~~~~~~~l~~~F~~~~~gi~V~~~~~ 40 (296)
T 3cfx_A 13 GSLSVPFEELEAEFEAQHPGVDVQREAA 40 (296)
T ss_dssp GGGHHHHHHHHHHHHHHSTTCEEEEEEC
T ss_pred ccHHHHHHHHHHHHHHHCCCceEEEEeC
Confidence 4577888889999999999999988643
No 37
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=36.25 E-value=44 Score=21.89 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=22.5
Q ss_pred HHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 37 TRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 37 ~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
...++...+.+|.+.+|++.|.+....
T Consensus 116 ~~~~l~~~l~~f~~~~P~v~l~l~~~~ 142 (315)
T 1uth_A 116 EMYFMPPLMEALAQRAPHIQISTLRPN 142 (315)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 456778889999999999999988754
No 38
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=34.51 E-value=34 Score=22.88 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=21.3
Q ss_pred HHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 37 TRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 37 ~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
+-.++..-+..|.+.+|++.|.+...
T Consensus 14 ~~~~~~~~~~~F~~~~P~v~i~v~~~ 39 (265)
T 4exl_A 14 LQPLVEVAADEFGTIHVGKTVNVQGG 39 (265)
T ss_dssp HHHHHHHHHHHHHHHSTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCceEEEeeC
Confidence 34677888899999999999988653
No 39
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=33.79 E-value=34 Score=22.69 Aligned_cols=27 Identities=7% Similarity=0.131 Sum_probs=22.7
Q ss_pred HHHHHHHHHcHHHHHHhCCCCeEEEEE
Q 041692 35 SSTRSFVERNYKELKTLNPKLPILIRE 61 (73)
Q Consensus 35 ~G~R~Fl~~~l~~fk~~NP~v~i~v~~ 61 (73)
.++++.++.....|.++||++.|.+..
T Consensus 13 ~s~~~~~~~l~~~F~~~~~gi~V~~~~ 39 (295)
T 3cij_A 13 GSLTEPMKAFKRAFEEKHPNVEVQTEA 39 (295)
T ss_dssp GGGHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 346788888999999999999998754
No 40
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=33.79 E-value=36 Score=21.43 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=22.3
Q ss_pred HHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 37 TRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 37 ~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
...|+...+.+|.+.+|++.|.+...
T Consensus 99 ~~~~l~~~l~~f~~~~P~v~i~~~~~ 124 (300)
T 3mz1_A 99 ANLVIIPALPEFHKKYPDIQIDLGVS 124 (300)
T ss_dssp HHHTHHHHHHHHHHHCTTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 35677899999999999999999764
No 41
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=33.60 E-value=34 Score=22.33 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=27.3
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 22 ELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
.|+|-..+.-+ ..|+...+.+|.+.+|++.|.+...
T Consensus 91 ~l~Ig~~~~~~-----~~~l~~~l~~f~~~~P~v~i~l~~~ 126 (312)
T 2h9b_A 91 TIRIGFVGSLL-----FGLLPRIIHLYRQAHPNLRIELYEM 126 (312)
T ss_dssp EEEEEECGGGG-----GTTHHHHHHHHHHTCTTCEEEEEEC
T ss_pred eEEEEechhhh-----HhhHHHHHHHHHHHCCCcEEEEEeC
Confidence 67776654321 3677889999999999999999764
No 42
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=33.01 E-value=65 Score=21.95 Aligned_cols=39 Identities=5% Similarity=0.098 Sum_probs=29.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 21 KELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 21 k~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
.+|+|..-.++ ....++++..+.+|.++|| |.|.+...+
T Consensus 28 ~~lti~~~~~~---~~~~~~~~~~~~~f~~~~~-i~V~~~~~~ 66 (415)
T 3oo8_A 28 GPITFGSNYSD---EAPKAAFASLMQQATTSTT-VPVTVNTTD 66 (415)
T ss_dssp CCEEEEECCCS---HHHHHHHHHHHHHHHHHHC-CCEEEEECC
T ss_pred ceEEEEeecCC---cchhHHHHHHHHHHHHhCC-eeEEEEecC
Confidence 46777665443 2456788999999999999 999887643
No 43
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=32.45 E-value=52 Score=22.61 Aligned_cols=25 Identities=8% Similarity=0.213 Sum_probs=20.6
Q ss_pred HHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 39 SFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 39 ~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
++++..+.+|.++||+|.|.+...+
T Consensus 31 ~~~~~~~~~f~~~~p~i~V~~~~~~ 55 (412)
T 2z8f_A 31 TLVNDIVAKWNKQHPDIQVKATKFD 55 (412)
T ss_dssp CCHHHHHHHHHHHCTTEEEEEEECS
T ss_pred HHHHHHHHHHHHHCCCceEEEEecC
Confidence 4567788899999999999887654
No 44
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=31.74 E-value=59 Score=22.22 Aligned_cols=37 Identities=5% Similarity=0.082 Sum_probs=27.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 22 ELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
+|+|..-.. .+-.++++..+.+|.++||++.|.+...
T Consensus 29 ~l~~w~~~~----~~~~~~~~~~~~~f~~~~pgi~V~~~~~ 65 (412)
T 3k01_A 29 TVTFWDTSN----EAEKATYQALAEGFEKEHPKVDVKYVNV 65 (412)
T ss_dssp EEEEEECCC----TTTHHHHHHHHHTHHHHCTTEEEEEEEC
T ss_pred EEEEecCCC----CcchHHHHHHHHHHHHHCcCeEEEEEec
Confidence 566654433 2345778889999999999999998764
No 45
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=29.90 E-value=23 Score=18.65 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=18.6
Q ss_pred HHHHHHHHHcHHHHHHhCCCC
Q 041692 35 SSTRSFVERNYKELKTLNPKL 55 (73)
Q Consensus 35 ~G~R~Fl~~~l~~fk~~NP~v 55 (73)
+-+|+||.+-|...-..+|++
T Consensus 18 ~~Le~YID~LL~~VmE~~P~i 38 (42)
T 2d7c_C 18 FRLQDYIDRIIVAIMETNPSI 38 (42)
T ss_dssp HHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCch
Confidence 568999999999999999975
No 46
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=29.87 E-value=45 Score=22.00 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=27.1
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 22 ELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
.|+|-....-+ ..|+...+.+|.+.+|++.|.+...
T Consensus 91 ~l~Ig~~~~~~-----~~~l~~~l~~f~~~~P~v~l~l~~~ 126 (313)
T 2h98_A 91 TLRIGYVSSLL-----YGLLPEIIYLFRQQNPEIHIELIEC 126 (313)
T ss_dssp EEEEEECGGGG-----GTTHHHHHHHHHHHCTTSEEEEEEC
T ss_pred EEEEEechHhH-----HhHHHHHHHHHHHHCCCeEEEEEeC
Confidence 67776544321 3578889999999999999998764
No 47
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=29.82 E-value=41 Score=21.09 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=28.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 21 KELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 21 k~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
..|+|-..+.- ...++...+..|.+.+|++.|.+...
T Consensus 91 ~~l~Ig~~~~~-----~~~~l~~~l~~f~~~~P~v~i~~~~~ 127 (291)
T 3szp_A 91 GRIRISAPSNL-----TKRMMMPMFNAFMEKYPDIHIELMMS 127 (291)
T ss_dssp EEEEEEEETTT-----HHHHTHHHHHHHHHHCTTEEEEEEEE
T ss_pred eEEEEeccHHH-----HHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 46777665432 34678899999999999999998754
No 48
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=28.59 E-value=44 Score=21.34 Aligned_cols=35 Identities=6% Similarity=0.032 Sum_probs=26.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEE
Q 041692 21 KELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIR 60 (73)
Q Consensus 21 k~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~ 60 (73)
..|+|-... .-...++...+.+|.+.+|++.|.+.
T Consensus 93 g~l~I~~~~-----~~~~~~l~~~l~~f~~~~P~v~i~l~ 127 (306)
T 3hhg_A 93 GVLSVDSAM-----PMVLHLLAPLAAKFNERYPHIRLSLV 127 (306)
T ss_dssp EEEEEEBCH-----HHHHHTHHHHHHHHHHHCTTEEEEEE
T ss_pred CcEEEEccH-----HHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 456664432 22356778899999999999999987
No 49
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=28.28 E-value=28 Score=21.04 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=19.4
Q ss_pred HHHHHHHcHHHHHHhCCCCeEEEEE
Q 041692 37 TRSFVERNYKELKTLNPKLPILIRE 61 (73)
Q Consensus 37 ~R~Fl~~~l~~fk~~NP~v~i~v~~ 61 (73)
+..++..-+..|.++ |++.|.+..
T Consensus 10 ~~~~l~~~~~~F~~~-p~i~v~~~~ 33 (231)
T 1atg_A 10 FLGTLEQLAGQFAKQ-TGHAVVISS 33 (231)
T ss_dssp GHHHHHHHHHHHHHH-HCCCEEEEE
T ss_pred hHHHHHHHHHHHHhc-cCCeEEEEE
Confidence 466778888899988 999988765
No 50
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=27.85 E-value=66 Score=21.65 Aligned_cols=24 Identities=8% Similarity=0.267 Sum_probs=20.1
Q ss_pred HHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 39 SFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 39 ~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
+.++..+..|.++||++.|.+...
T Consensus 45 ~~~~~~~~~Fe~~~Pgi~V~~~~~ 68 (355)
T 3c9h_A 45 PLATPMIEGFQKANPDIAVHYEDM 68 (355)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHCcCeEEEEEeC
Confidence 567788899999999999988654
No 51
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=27.55 E-value=44 Score=23.55 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=22.6
Q ss_pred HHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 37 TRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 37 ~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
-.++++..+.+|.++||++.|.+...
T Consensus 40 ~~~~~~~~~~~F~~~~pgi~V~~~~~ 65 (458)
T 3uor_A 40 EAEVVAELVADFEKQNPTIHVDVQNI 65 (458)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEEEc
Confidence 45788999999999999999988764
No 52
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=27.33 E-value=1.1e+02 Score=19.28 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=29.0
Q ss_pred CCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEcCCCCC
Q 041692 28 CQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECSGIEP 67 (73)
Q Consensus 28 C~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~~g~~P 67 (73)
|=.-+||+-+-+||+- .+++..|+.+|.++-.--.+|
T Consensus 22 CVnaPSSkeTyEWLqA---al~RKyp~~~f~~~YIDI~~~ 58 (111)
T 1xg8_A 22 CVNAPTSKDIYDWLQP---LLKRKYPNISFKYTYIDITKD 58 (111)
T ss_dssp GSSSCCHHHHHHHHHH---HHHHHCTTSCEEEEEEETTTC
T ss_pred ccCCCCchhHHHHHHH---HHhCcCCCCceEEEEEeccCC
Confidence 6688999999999985 568899999998876543333
No 53
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=26.89 E-value=44 Score=20.02 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCC-CeEEEEEcC
Q 041692 22 ELRILLCQTSPSSSSTRSFVERNYKELKTLNPK-LPILIRECS 63 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~-v~i~v~~~~ 63 (73)
+|+|.||...+-. .--. .--.++....|+ +.|.+...+
T Consensus 4 ~V~I~YC~~C~y~-~ra~---~laqeLl~~Fp~~l~V~~~l~p 42 (96)
T 2npb_A 4 AVRVVYSGACGYK-PKYL---QLKEKLEHEFPGCLDICGEGTP 42 (96)
T ss_dssp EEEEECCCCSCHH-HHHH---HHHHHHHHHSBTTEEEEECCCS
T ss_pred EEEEEEcCCCCCH-HHHH---HHHHHHHHhCCcceEEEEEEcC
Confidence 6899999887521 1111 122345556676 666665444
No 54
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=26.70 E-value=1.3e+02 Score=21.61 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=31.7
Q ss_pred cccceEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEE
Q 041692 18 RSMKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIR 60 (73)
Q Consensus 18 ~qLk~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~ 60 (73)
+...-+.|.|.-+.. +....+++.+.+.++...+|+++|.+-
T Consensus 71 r~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillv 112 (331)
T 3r7w_B 71 KSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVL 112 (331)
T ss_dssp TTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 345567788876665 667788887777788888999998775
No 55
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=26.31 E-value=59 Score=21.74 Aligned_cols=29 Identities=3% Similarity=0.047 Sum_probs=22.0
Q ss_pred CHHHHHHHHHcHHHHHHh---C--CCCeEEEEEc
Q 041692 34 SSSTRSFVERNYKELKTL---N--PKLPILIREC 62 (73)
Q Consensus 34 S~G~R~Fl~~~l~~fk~~---N--P~v~i~v~~~ 62 (73)
+.....++...+..|+++ + |++.|.+...
T Consensus 28 ~~~~~~~lp~ll~~F~~~~~~~~~P~v~v~l~~~ 61 (294)
T 3cvg_A 28 GAGQSGLVKELADAFIKSKVDSGSAPFKVAWYKS 61 (294)
T ss_dssp HHHHHTHHHHHHHHHHHHHHSCC---CEEEEEEC
T ss_pred cchhHHHHHHHHHHHHhhhcccCCCCeEEEEEeC
Confidence 344567889999999999 9 9999999864
No 56
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=26.14 E-value=7.9 Score=24.76 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=15.4
Q ss_pred cceEEEEeCCCCCCCHHHHHH
Q 041692 20 MKELRILLCQTSPSSSSTRSF 40 (73)
Q Consensus 20 Lk~l~~~yC~~~~SS~G~R~F 40 (73)
-..|||+||+..-++.|-|-|
T Consensus 78 ~Y~VrLhF~ei~~~~~~~rvF 98 (174)
T 2jwp_A 78 EYVLVLKFAEVYFAQSQQKVF 98 (174)
T ss_dssp EEEEEEEEECCSCCCSSSSCE
T ss_pred EEEEEEEEeccccCCCCCeEe
Confidence 345999999987666666654
No 57
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.86 E-value=33 Score=19.68 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=28.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEE
Q 041692 23 LRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRE 61 (73)
Q Consensus 23 l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~ 61 (73)
|...|-+|.+.++-+...+.+....++..++.+.|....
T Consensus 38 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd 76 (140)
T 2dj1_A 38 LLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKID 76 (140)
T ss_dssp EEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEEC
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEe
Confidence 556677788888888888877777777777777765543
No 58
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=25.85 E-value=28 Score=19.83 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=18.6
Q ss_pred HHHHHHHHHcHHHHHHhCCCC
Q 041692 35 SSTRSFVERNYKELKTLNPKL 55 (73)
Q Consensus 35 ~G~R~Fl~~~l~~fk~~NP~v 55 (73)
+=+|+||.+-|..+-..+|++
T Consensus 40 ~~Le~YID~LL~~ImE~~Psi 60 (64)
T 2hv8_D 40 FRLQDYIDRIIVAIMETNPSI 60 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCch
Confidence 568999999999999999975
No 59
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=25.68 E-value=49 Score=19.68 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=16.0
Q ss_pred eEEEEeCCCCCCCHHHHHHHH
Q 041692 22 ELRILLCQTSPSSSSTRSFVE 42 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~ 42 (73)
+-.+.||..|..|.-+-.+|.
T Consensus 75 ~~ivv~C~sG~RS~~aa~~L~ 95 (134)
T 1vee_A 75 TTLYILDKFDGNSELVAELVA 95 (134)
T ss_dssp CEEEEECSSSTTHHHHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHH
Confidence 456779999988877766664
No 60
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=25.54 E-value=39 Score=22.52 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=20.7
Q ss_pred HHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 38 RSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 38 R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
-.++..-+..|.+.+|++.|.+...
T Consensus 15 ~~~l~~~~~~f~~~~P~v~i~v~~~ 39 (264)
T 4ecf_A 15 QPLVEAAGEQYTGEHLGTFINVQGG 39 (264)
T ss_dssp HHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCceEEEEeC
Confidence 4677888899999999999988654
No 61
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=25.54 E-value=38 Score=18.48 Aligned_cols=39 Identities=8% Similarity=0.008 Sum_probs=27.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEE
Q 041692 23 LRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRE 61 (73)
Q Consensus 23 l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~ 61 (73)
|.+.|.+|.+.++-+...+.+....++..++.+.|....
T Consensus 28 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd 66 (120)
T 1mek_A 28 LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66 (120)
T ss_dssp EEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEE
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEc
Confidence 667788899999988887776666665555666665443
No 62
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=25.26 E-value=37 Score=24.63 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHcHHHHHHhCCCCeEEEEEcCCCCCEEEEeC
Q 041692 33 SSSSTRSFVERNYKELKTLNPKLPILIRECSGIEPQLWARY 73 (73)
Q Consensus 33 SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~~g~~P~l~a~Y 73 (73)
+...+|.|-+.--..+++..|+..........+.-+|+..|
T Consensus 191 ~~~~vr~fa~~~A~~l~~~~Pd~~t~~~~k~~R~gkIfvDy 231 (303)
T 2iru_A 191 SSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDW 231 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTEESSCCGGGCTTSEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHCcceehhhhhHHhCCCCEEEEC
Confidence 56889999998888999999998877666666666777665
No 63
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin, chitooligosaccharide, pseudochitinase, HY; HET: NAG; 1.95A {Homo sapiens}
Probab=25.01 E-value=46 Score=23.25 Aligned_cols=20 Identities=45% Similarity=0.564 Sum_probs=16.6
Q ss_pred HcHHHHHHhCCCCeEEEEEc
Q 041692 43 RNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 43 ~~l~~fk~~NP~v~i~v~~~ 62 (73)
+.+..+|+.||++.+++.-.
T Consensus 58 ~~~~~lK~~~p~lKvllSiG 77 (365)
T 4ay1_A 58 QTINSLKTKNPKLKILLSIG 77 (365)
T ss_dssp HHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHHCCCCEEEEEEe
Confidence 56778999999999998653
No 64
>3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A*
Probab=24.94 E-value=49 Score=20.61 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=27.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHH-HcH------------------HHHHHhCC--CCeEEE
Q 041692 22 ELRILLCQTSPSSSSTRSFVE-RNY------------------KELKTLNP--KLPILI 59 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~-~~l------------------~~fk~~NP--~v~i~v 59 (73)
+++|.+.+.++-|.-+|=.++ ..+ ++|++.|| .||+++
T Consensus 18 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~ 76 (233)
T 3ibh_A 18 KMIIYDTPAGPYPARVRIALAEKNMLSSVQFVRINLWKGEHKKPEFLAKNYSGTVPVLE 76 (233)
T ss_dssp -CEEEECTTCHHHHHHHHHHHHTTCGGGCEEEECCGGGTGGGSHHHHHHCTTCCSCEEE
T ss_pred ceEEecCCCCCccHHHHHHHHhcCCCCCceEEEeccccccccChHHhccCCCCccceEE
Confidence 588999999888888998885 344 56788887 455544
No 65
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=24.54 E-value=49 Score=21.92 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=22.3
Q ss_pred HHHHHHHHHcHHHHHHhCCCCeEEEEE
Q 041692 35 SSTRSFVERNYKELKTLNPKLPILIRE 61 (73)
Q Consensus 35 ~G~R~Fl~~~l~~fk~~NP~v~i~v~~ 61 (73)
.++++.++.-...|.++||++.|.+..
T Consensus 13 ~s~~~~~~~l~~~F~~~~~gi~V~~~~ 39 (292)
T 3cfz_A 13 GSLSVPFEEYEKMFEKEHPNVDVEREP 39 (292)
T ss_dssp GGGHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cchHHHHHHHHHHHHHHCCCceEEEEe
Confidence 356788888899999999999988754
No 66
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=24.40 E-value=81 Score=19.65 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=31.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 23 LRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 23 l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
|...|-+|.+.++.+..-+.....+++..+|.+.|.....
T Consensus 151 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~ 190 (241)
T 3idv_A 151 LVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDA 190 (241)
T ss_dssp EEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEET
T ss_pred EEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEEC
Confidence 5556788999999998888888888888889888776543
No 67
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=24.11 E-value=26 Score=24.62 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHcHHHHHHhCCCCeEEEEE
Q 041692 32 PSSSSTRSFVERNYKELKTLNPKLPILIRE 61 (73)
Q Consensus 32 ~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~ 61 (73)
+|+. +-.++..-+..|++.+|++.|.+..
T Consensus 33 gSst-~~~~l~~~~~~f~~~~p~v~i~v~~ 61 (350)
T 1pc3_A 33 GSTL-LYPLFNLWGPAFHERYPNVTITAQG 61 (350)
T ss_dssp ECTT-THHHHHHHHHHHHHHSTTEEEECCB
T ss_pred EeCc-HHHHHHHHHHHHHHHCCCceEEEec
Confidence 3444 4568889999999999999988754
No 68
>3ge3_E Toluene-4-monooxygenase system protein D; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.137.1.1 PDB: 3dhh_E* 3dhi_E 3ge8_E 3i5j_E 3i63_E 3q14_E 3q2a_E* 3q3m_E* 3q3n_E* 3q3o_E* 1g10_A 1g11_A 2bf2_A 3ri7_E 2bf5_A 2bf3_A* 2bf3_B*
Probab=23.87 E-value=62 Score=19.84 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=14.1
Q ss_pred HHHHhCCCCeEEEEEcCC
Q 041692 47 ELKTLNPKLPILIRECSG 64 (73)
Q Consensus 47 ~fk~~NP~v~i~v~~~~g 64 (73)
.+.+.||++.|.|..+++
T Consensus 30 aI~~DNP~~~v~V~d~pa 47 (103)
T 3ge3_E 30 TAEIDNPGKEITVEDRRA 47 (103)
T ss_dssp HHHHHCTTSCCEEEECSS
T ss_pred HHHhHCcCCEEEEeecCC
Confidence 455789999988877764
No 69
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=23.76 E-value=93 Score=16.84 Aligned_cols=36 Identities=3% Similarity=-0.202 Sum_probs=24.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 23 LRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 23 l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
|...|-+|.+.++-+... +.++++..|++.|.....
T Consensus 22 lv~f~a~wC~~C~~~~p~----~~~~~~~~~~~~~~~vd~ 57 (105)
T 4euy_A 22 LLFIKTENCGVCDVMLRK----VNYVLENYNYVEKIEILL 57 (105)
T ss_dssp EEEEEESSCHHHHHHHHH----HHHHHHTCTTEEEEEEEE
T ss_pred EEEEeCCCCcchHHHHHH----HHHHHHHcCCceEEEEEC
Confidence 555677888888776554 466777778777665443
No 70
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=23.74 E-value=39 Score=18.31 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=14.1
Q ss_pred HHHHcHHHHHHhCCCCe
Q 041692 40 FVERNYKELKTLNPKLP 56 (73)
Q Consensus 40 Fl~~~l~~fk~~NP~v~ 56 (73)
|....-..++.+||++.
T Consensus 14 f~~~~r~~~~~~~p~~~ 30 (73)
T 1wxl_A 14 WLNDTRESIKRENPGIK 30 (73)
T ss_dssp HHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHCCCCC
Confidence 56778899999999875
No 71
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=23.70 E-value=1.2e+02 Score=17.78 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=24.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCC
Q 041692 23 LRILLCQTSPSSSSTRSFVERNYKELKTLNPKL 55 (73)
Q Consensus 23 l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v 55 (73)
|.+.+ ..-.-+..+|+||++.+..|.+-.+.+
T Consensus 3 i~I~g-~~ie~t~alr~~ve~Kl~kL~k~~d~i 34 (101)
T 3v26_X 3 LNITG-NNVEITEALREFVTAKFAKLEQYFDRI 34 (101)
T ss_dssp EEEEC-SSSCCCHHHHHHHHHHHHHHHTTCSCC
T ss_pred EEEEE-ecccCCHHHHHHHHHHHHHHHhhcCCC
Confidence 44543 555678999999999999998877654
No 72
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=22.95 E-value=41 Score=18.25 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=14.8
Q ss_pred HHHHHcHHHHHHhCCCCeE
Q 041692 39 SFVERNYKELKTLNPKLPI 57 (73)
Q Consensus 39 ~Fl~~~l~~fk~~NP~v~i 57 (73)
-|....-+.++.+||++.+
T Consensus 13 lf~~~~r~~~~~~~p~~~~ 31 (73)
T 3nm9_A 13 LWLNSARESIKRENPGIKV 31 (73)
T ss_dssp HHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHHHCCCCCH
Confidence 3557788899999998753
No 73
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=22.92 E-value=43 Score=22.04 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=21.6
Q ss_pred HHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 38 RSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 38 R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
..++...+.+|.+.+|++.|.+...
T Consensus 105 ~~~l~~~l~~f~~~~P~v~i~l~~~ 129 (324)
T 1al3_A 105 RYALPGVIKGFIERYPRVSLHMHQG 129 (324)
T ss_dssp HHTSHHHHHHHHHHCTEEEEEEEEC
T ss_pred hhHHHHHHHHHHHHCCCCEEEEEEC
Confidence 5667889999999999999998764
No 74
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=22.82 E-value=93 Score=16.39 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=24.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 23 LRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 23 l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
|.+.|.+|.+.++-+...+ .++++.+|++.|.....
T Consensus 23 ~v~f~~~~C~~C~~~~~~l----~~~~~~~~~~~~~~v~~ 58 (104)
T 2vim_A 23 VVDFFAQWCGPCRNIAPKV----EALAKEIPEVEFAKVDV 58 (104)
T ss_dssp EEEEECTTCHHHHHHHHHH----HHHHHHCTTSEEEEEET
T ss_pred EEEEECCCCHHHHHhhHHH----HHHHHHCCCCEEEEEec
Confidence 5556778887777776654 45677778777765443
No 75
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=22.71 E-value=91 Score=16.53 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=25.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEc
Q 041692 22 ELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~ 62 (73)
-|...|.+|.+.++-+...+ .++++.+|++.|.....
T Consensus 23 ~~v~f~~~~C~~C~~~~~~~----~~~~~~~~~~~~~~vd~ 59 (105)
T 3m9j_A 23 VVVDFSATWCGPCKMIKPFF----HSLSEKYSNVIFLEVDV 59 (105)
T ss_dssp EEEEEECTTCHHHHHHHHHH----HHHHHHSTTSEEEEEET
T ss_pred EEEEEECCCChhhHHHHHHH----HHHHHHccCeEEEEEEh
Confidence 35667788888887776655 55777788877665443
No 76
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=22.40 E-value=1.3e+02 Score=17.64 Aligned_cols=42 Identities=12% Similarity=0.220 Sum_probs=34.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHHH-cHHHHHHhCCCC--eEEEEEcC
Q 041692 22 ELRILLCQTSPSSSSTRSFVER-NYKELKTLNPKL--PILIRECS 63 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~~-~l~~fk~~NP~v--~i~v~~~~ 63 (73)
+|-+.|-+..+=+.|+.+=|+. ....+.+..|++ .|.|+...
T Consensus 2 rVEi~~dK~~~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~Vr~~s 46 (81)
T 1ghh_A 2 RIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAA 46 (81)
T ss_dssp EEEEEEETTSCCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEEEES
T ss_pred eEEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCceEEEeecC
Confidence 5677888888888999999965 666899999999 78888776
No 77
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=22.20 E-value=75 Score=20.95 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=20.6
Q ss_pred HHHHHHHcHHHHHHhCCCCeEEEEE
Q 041692 37 TRSFVERNYKELKTLNPKLPILIRE 61 (73)
Q Consensus 37 ~R~Fl~~~l~~fk~~NP~v~i~v~~ 61 (73)
+-.+++.-...|.+.||++.|.+..
T Consensus 47 ~~p~~~~~a~~f~~~~p~v~v~~~~ 71 (279)
T 4gd5_A 47 VGPVMEAEAEAFKTKKPDVSIEINQ 71 (279)
T ss_dssp THHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCceEEEee
Confidence 4567777788999999999998864
No 78
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=22.10 E-value=66 Score=20.06 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=24.0
Q ss_pred eEEEEeCCCCCCCHHHHHHHH---HcHHHHHHhCCCCeEEEEEcCC
Q 041692 22 ELRILLCQTSPSSSSTRSFVE---RNYKELKTLNPKLPILIRECSG 64 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~---~~l~~fk~~NP~v~i~v~~~~g 64 (73)
+|++.||...+ |+. ..-.+|....|++.|...+..+
T Consensus 26 rV~IeYC~~C~-------~~~ra~~laqeLl~tFp~~~V~l~pg~~ 64 (117)
T 2ljk_A 26 RIVVEYCEPCG-------FEATYLELASAVKEQYPGIEIESRLGGT 64 (117)
T ss_dssp CCEEEECTTTT-------CHHHHHHHHHHHTTTCSSSCCEEEECSS
T ss_pred eEEEEECCCCC-------CHHHHHHHHHHHHhhCCcceEEEecCCC
Confidence 69999999885 332 1223566677888877776553
No 79
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM barrel, chitin binding, glyco hydrolase, hydrolase; 2.10A {Crocus vernus}
Probab=21.87 E-value=47 Score=22.59 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=16.3
Q ss_pred HcHHHHHHhCCCCeEEEEEc
Q 041692 43 RNYKELKTLNPKLPILIREC 62 (73)
Q Consensus 43 ~~l~~fk~~NP~v~i~v~~~ 62 (73)
+.+..+|++||++.+++--.
T Consensus 64 ~~~~~lK~~~~~lKvllSiG 83 (275)
T 3sim_A 64 DQISAIKSSHPNVRVAVSLG 83 (275)
T ss_dssp HHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEEEc
Confidence 46778999999999987654
No 80
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=21.82 E-value=57 Score=17.31 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.1
Q ss_pred HHHHcHHHHHHhCCCCe
Q 041692 40 FVERNYKELKTLNPKLP 56 (73)
Q Consensus 40 Fl~~~l~~fk~~NP~v~ 56 (73)
|....-..++..||++.
T Consensus 12 F~~~~r~~~~~~~p~~~ 28 (71)
T 1ckt_A 12 FVQTCREEHKKKHPDAS 28 (71)
T ss_dssp HHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHCCCCC
Confidence 66778889999999875
No 81
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=21.26 E-value=1.5e+02 Score=18.18 Aligned_cols=43 Identities=5% Similarity=-0.042 Sum_probs=24.7
Q ss_pred ccceEEEEeCCCCCCCHHHHHHHHHcHHHHHHhCCCCeEEEEEcC
Q 041692 19 SMKELRILLCQTSPSSSSTRSFVERNYKELKTLNPKLPILIRECS 63 (73)
Q Consensus 19 qLk~l~~~yC~~~~SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~~ 63 (73)
..-+|++.||...+-.-=.-.+-+..+..|...- ..+...+..
T Consensus 7 ~~~~V~I~YC~~C~w~lRa~~laqeLl~tF~~~l--~eV~L~P~~ 49 (108)
T 2ojl_A 7 HPPRIAIQYCTQCQWLLRAAWMAQELLSTFGADL--GEVALVPGT 49 (108)
T ss_dssp CCCEEEEEEETTTTCHHHHHHHHHHHHHHHGGGS--SEEEEEEEC
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHHHhcCccc--ceEEEEeCC
Confidence 3468999999887654333223345666776443 344444443
No 82
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.94 E-value=64 Score=18.30 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.5
Q ss_pred HHHHcHHHHHHhCCCCe
Q 041692 40 FVERNYKELKTLNPKLP 56 (73)
Q Consensus 40 Fl~~~l~~fk~~NP~v~ 56 (73)
|+...-..++.+||++.
T Consensus 16 F~~e~R~~ik~~~P~~~ 32 (81)
T 2d7l_A 16 WLEENRSNILSDNPDFS 32 (81)
T ss_dssp HHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHCCCCc
Confidence 66788899999999974
No 83
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=20.54 E-value=53 Score=23.79 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHcHHHHHHhCCCCeEEEEEcCCCCCEEEEeC
Q 041692 33 SSSSTRSFVERNYKELKTLNPKLPILIRECSGIEPQLWARY 73 (73)
Q Consensus 33 SS~G~R~Fl~~~l~~fk~~NP~v~i~v~~~~g~~P~l~a~Y 73 (73)
+..-+|.|-+..-..+++..|+......-...+.-+|+..|
T Consensus 189 ~~~~vr~fa~~~A~~l~~~~Pd~~t~~~~k~~R~gkIfiDy 229 (309)
T 2fao_A 189 GWDEVKDFAQAISQHLARLMPERFSAVSGPRNRVGKIFVDY 229 (309)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTEECSCSGGGSTTSEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHhCcceeehhhhHhhCCCCEEEeC
Confidence 56889999998888999999998876666666666677665
No 84
>2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*
Probab=20.27 E-value=92 Score=18.90 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=26.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHH-Hc------------HHHHHHhCCC--CeEEE
Q 041692 22 ELRILLCQTSPSSSSTRSFVE-RN------------YKELKTLNPK--LPILI 59 (73)
Q Consensus 22 ~l~~~yC~~~~SS~G~R~Fl~-~~------------l~~fk~~NP~--v~i~v 59 (73)
+++|.|.+.++.|.-+|-++. .. -++|++.||. ||+++
T Consensus 2 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~ 54 (198)
T 2cvd_A 2 NYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILE 54 (198)
T ss_dssp CEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGGGHHHHHTTSTTSCSCEEE
T ss_pred CcEEEEcCCCchHHHHHHHHHHcCCCceEEEeCHHHHHHhccCCCCCCCCEEE
Confidence 367778787888888887774 22 3678888884 66665
Done!